Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53855.t1 | XP_013447616.1 | 93.7 | 271 | 11 | 2 | 1 | 271 | 1 | 265 | 4.30E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53855.t1 | Q6DI37 | 25.4 | 240 | 148 | 10 | 9 | 240 | 91 | 307 | 9.4e-06 | 52.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53855.t1 | A0A072TW64 | 93.7 | 271 | 11 | 2 | 1 | 271 | 1 | 265 | 3.1e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene53855 | -0.808366 | 3.21E-50 | -1.69E-46 |
| MS.gene050312 | MS.gene53855 | 0.803142 | 4.02E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene53855 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene53855 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene53855 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene53855 | 0.819018 | 1.45E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene53855 | 0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene055147 | MS.gene53855 | 0.835811 | 1.35E-56 | -1.69E-46 |
| MS.gene055148 | MS.gene53855 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene53855 | 0.810755 | 9.85E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene53855 | 0.80315 | 4.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53855.t1 | MTR_7g015170 | 93.727 | 271 | 11 | 2 | 1 | 271 | 1 | 265 | 0.0 | 519 |
| MS.gene53855.t1 | MTR_7g015150 | 85.294 | 272 | 39 | 1 | 1 | 271 | 17 | 288 | 3.27e-170 | 472 |
| MS.gene53855.t1 | MTR_7g015130 | 81.655 | 278 | 38 | 3 | 1 | 271 | 1 | 272 | 2.95e-165 | 459 |
| MS.gene53855.t1 | MTR_7g015180 | 79.779 | 272 | 53 | 2 | 1 | 271 | 1 | 271 | 2.68e-159 | 443 |
| MS.gene53855.t1 | MTR_7g015130 | 83.260 | 227 | 31 | 1 | 52 | 271 | 11 | 237 | 5.75e-141 | 396 |
| MS.gene53855.t1 | MTR_7g015130 | 79.111 | 225 | 34 | 3 | 1 | 218 | 1 | 219 | 7.09e-125 | 355 |
| MS.gene53855.t1 | MTR_7g015130 | 79.018 | 224 | 34 | 3 | 1 | 217 | 1 | 218 | 5.90e-124 | 352 |
| MS.gene53855.t1 | MTR_7g015190 | 62.172 | 267 | 92 | 6 | 6 | 270 | 47 | 306 | 5.10e-117 | 338 |
| MS.gene53855.t1 | MTR_7g015190 | 65.306 | 245 | 79 | 4 | 28 | 271 | 102 | 341 | 1.35e-113 | 330 |
| MS.gene53855.t1 | MTR_7g015190 | 54.930 | 284 | 102 | 8 | 6 | 270 | 47 | 323 | 3.40e-100 | 296 |
| MS.gene53855.t1 | MTR_7g015190 | 54.930 | 284 | 101 | 8 | 6 | 270 | 47 | 322 | 3.59e-100 | 296 |
| MS.gene53855.t1 | MTR_2g060670 | 52.968 | 219 | 100 | 1 | 49 | 264 | 492 | 710 | 9.73e-80 | 255 |
| MS.gene53855.t1 | MTR_2g060670 | 56.410 | 156 | 65 | 1 | 49 | 201 | 492 | 647 | 9.17e-59 | 198 |
| MS.gene53855.t1 | MTR_7g103560 | 40.598 | 234 | 126 | 4 | 39 | 266 | 34 | 260 | 1.22e-57 | 185 |
| MS.gene53855.t1 | MTR_7g103570 | 41.333 | 225 | 120 | 3 | 38 | 257 | 27 | 244 | 1.03e-55 | 180 |
| MS.gene53855.t1 | MTR_7g103410 | 40.761 | 184 | 102 | 3 | 82 | 263 | 65 | 243 | 1.48e-48 | 161 |
| MS.gene53855.t1 | MTR_7g103570 | 40.571 | 175 | 91 | 4 | 25 | 194 | 15 | 181 | 1.70e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53855.t1 | AT3G29760 | 53.659 | 205 | 94 | 1 | 62 | 266 | 318 | 521 | 9.44e-82 | 255 |
| MS.gene53855.t1 | AT3G29760 | 53.659 | 205 | 94 | 1 | 62 | 266 | 318 | 521 | 9.44e-82 | 255 |
| MS.gene53855.t1 | AT3G29760 | 47.619 | 231 | 94 | 2 | 62 | 266 | 318 | 547 | 1.28e-75 | 240 |
| MS.gene53855.t1 | AT4G26190 | 48.598 | 214 | 109 | 1 | 48 | 261 | 841 | 1053 | 2.54e-68 | 228 |
| MS.gene53855.t1 | AT4G26190 | 48.598 | 214 | 109 | 1 | 48 | 261 | 841 | 1053 | 2.54e-68 | 228 |
| MS.gene53855.t1 | AT4G26190 | 48.598 | 214 | 109 | 1 | 48 | 261 | 841 | 1053 | 2.54e-68 | 228 |
| MS.gene53855.t1 | AT4G26190 | 48.598 | 214 | 109 | 1 | 48 | 261 | 841 | 1053 | 2.54e-68 | 228 |
| MS.gene53855.t1 | AT4G26190 | 48.598 | 214 | 109 | 1 | 48 | 261 | 841 | 1053 | 2.54e-68 | 228 |
| MS.gene53855.t1 | AT3G29760 | 55.245 | 143 | 61 | 2 | 62 | 204 | 318 | 457 | 7.00e-53 | 178 |
| MS.gene53855.t1 | AT2G36540 | 36.979 | 192 | 102 | 4 | 69 | 260 | 72 | 244 | 1.28e-39 | 138 |
| MS.gene53855.t1 | AT2G36550 | 39.098 | 133 | 73 | 2 | 133 | 265 | 17 | 141 | 1.02e-28 | 107 |
| MS.gene53855.t1 | AT3G29760 | 50.704 | 71 | 34 | 1 | 62 | 132 | 318 | 387 | 2.44e-19 | 87.0 |
Find 36 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTTCTTGATTTAAA+TGG | 0.160699 | 7.4:+84349157 | MS.gene53855:CDS |
| TTAAGGATCTAAGGAAAATT+TGG | 0.214094 | 7.4:+84350668 | MS.gene53855:CDS |
| TTCAGAAACTCGTGATAAAA+AGG | 0.276322 | 7.4:-84349662 | None:intergenic |
| CCCCTCTCCCAAGGAAGATT+TGG | 0.307541 | 7.4:-84350703 | None:intergenic |
| TAAGGATCTAAGGAAAATTT+GGG | 0.340790 | 7.4:+84350669 | MS.gene53855:CDS |
| TGGCGATTTACGACAATATC+TGG | 0.361316 | 7.4:+84351361 | MS.gene53855:CDS |
| ACTGGCAACTGCTGAAAATA+TGG | 0.366395 | 7.4:+84351388 | MS.gene53855:CDS |
| AATCAGAATGACAATTCATT+AGG | 0.409111 | 7.4:+84350946 | MS.gene53855:CDS |
| TCACTGAAACAAGTGAATCT+TGG | 0.412951 | 7.4:+84351450 | MS.gene53855:CDS |
| CACTGAAACAAGTGAATCTT+GGG | 0.414915 | 7.4:+84351451 | MS.gene53855:CDS |
| TTCATGGCTATGAATGCATC+TGG | 0.415674 | 7.4:-84349223 | None:intergenic |
| AGTATGATCCAAATCTTCCT+TGG | 0.468731 | 7.4:+84350695 | MS.gene53855:CDS |
| GTGATACGTTCTTGACCAAA+TGG | 0.469114 | 7.4:-84351431 | None:intergenic |
| GCATCTGGTTTAACATGCCT+TGG | 0.471433 | 7.4:-84349208 | None:intergenic |
| CAGTGTTATTGATTATTTGA+TGG | 0.474248 | 7.4:+84349837 | MS.gene53855:CDS |
| TATGTAGAGCAACATCCATT+TGG | 0.482270 | 7.4:+84351416 | MS.gene53855:CDS |
| CGAGAACAAGCGCAAGCCAC+TGG | 0.490249 | 7.4:+84350642 | MS.gene53855:CDS |
| TCAATTGAAATATTATCAGT+TGG | 0.493002 | 7.4:+84349115 | MS.gene53855:CDS |
| AGTGTTATTGATTATTTGAT+GGG | 0.517466 | 7.4:+84349838 | MS.gene53855:CDS |
| GTATGATCCAAATCTTCCTT+GGG | 0.519547 | 7.4:+84350696 | MS.gene53855:CDS |
| CTGCTTTGAGAGATTTGAAG+TGG | 0.522255 | 7.4:+84349688 | MS.gene53855:CDS |
| GCTGGATGATTCTCCGTACA+AGG | 0.528813 | 7.4:+84350753 | MS.gene53855:CDS |
| GGTTTAACATGCCTTGGATG+TGG | 0.529199 | 7.4:-84349202 | None:intergenic |
| TGAGTCAAACACATTGCTGC+TGG | 0.536574 | 7.4:+84350735 | MS.gene53855:CDS |
| ATCCAAATCTTCCTTGGGAG+AGG | 0.538624 | 7.4:+84350701 | MS.gene53855:CDS |
| GGATTAAGCAGCGCCTTGTA+CGG | 0.548018 | 7.4:-84350766 | None:intergenic |
| CCAAATCTTCCTTGGGAGAG+GGG | 0.550802 | 7.4:+84350703 | MS.gene53855:CDS |
| TCCAAATCTTCCTTGGGAGA+GGG | 0.557235 | 7.4:+84350702 | MS.gene53855:CDS |
| ACGACAATATCTGGATGGAC+TGG | 0.567504 | 7.4:+84351370 | MS.gene53855:CDS |
| TTGTAATATCCCCTCTCCCA+AGG | 0.593037 | 7.4:-84350712 | None:intergenic |
| TTCTCATAACTGAATGTATG+CGG | 0.630484 | 7.4:-84350925 | None:intergenic |
| AAAGACTATTGATAACATTG+AGG | 0.642096 | 7.4:-84351481 | None:intergenic |
| TGATGGGAGACATGAAACAA+AGG | 0.653332 | 7.4:+84349854 | MS.gene53855:CDS |
| AGAGATTTGAAGTGGCTGTG+TGG | 0.661167 | 7.4:+84349696 | MS.gene53855:CDS |
| GATTTACGACAATATCTGGA+TGG | 0.663493 | 7.4:+84351365 | MS.gene53855:CDS |
| TGCGGAAAGATTGAGTTGTG+TGG | 0.697288 | 7.4:-84350907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGCATTTAATTTTGAT+AGG | + | chr7.4:84349317-84349336 | MS.gene53855:intron | 15.0% |
| !!! | TTAATCTATTTTCTAATGAT+TGG | + | chr7.4:84349607-84349626 | MS.gene53855:intron | 15.0% |
| !! | CATATAAAACACTGTTTAAT+AGG | - | chr7.4:84351053-84351072 | None:intergenic | 20.0% |
| !! | CTTATTGTTCTTGATTTAAA+TGG | + | chr7.4:84349157-84349176 | MS.gene53855:CDS | 20.0% |
| !! | GGTATATGTTTAATTAAATC+TGG | + | chr7.4:84349992-84350011 | MS.gene53855:intron | 20.0% |
| !! | TCAATTGAAATATTATCAGT+TGG | + | chr7.4:84349115-84349134 | MS.gene53855:CDS | 20.0% |
| !! | TTCAAATTCAAACATAAGAT+TGG | - | chr7.4:84349363-84349382 | None:intergenic | 20.0% |
| !! | TTTGTAGACAATTAGTTATT+AGG | + | chr7.4:84349765-84349784 | MS.gene53855:intron | 20.0% |
| !!! | AGTGTTATTGATTATTTGAT+GGG | + | chr7.4:84349838-84349857 | MS.gene53855:CDS | 20.0% |
| !!! | CGTCTGTTTTATAATTTTTT+AGG | + | chr7.4:84349803-84349822 | MS.gene53855:intron | 20.0% |
| ! | AAAGATTACACAACTAAACA+TGG | - | chr7.4:84350033-84350052 | None:intergenic | 25.0% |
| ! | AATATAAAGACACATCAACT+TGG | + | chr7.4:84350281-84350300 | MS.gene53855:intron | 25.0% |
| ! | AATCAGAATGACAATTCATT+AGG | + | chr7.4:84350946-84350965 | MS.gene53855:CDS | 25.0% |
| ! | ATATAAAGACACATCAACTT+GGG | + | chr7.4:84350282-84350301 | MS.gene53855:intron | 25.0% |
| ! | ATATACACAATCAATGAGTA+AGG | - | chr7.4:84349571-84349590 | None:intergenic | 25.0% |
| ! | CATATTACATATTCTTTGAC+AGG | + | chr7.4:84350582-84350601 | MS.gene53855:intron | 25.0% |
| ! | TAAGGATCTAAGGAAAATTT+GGG | + | chr7.4:84350669-84350688 | MS.gene53855:CDS | 25.0% |
| ! | TACTGATGAAAAAGAAGAAA+AGG | + | chr7.4:84349072-84349091 | MS.gene53855:CDS | 25.0% |
| ! | TAGATTTGGCATAAATCATA+TGG | + | chr7.4:84349971-84349990 | MS.gene53855:intron | 25.0% |
| ! | TCTACGTATATTTGTAAACT+CGG | + | chr7.4:84350984-84351003 | MS.gene53855:intron | 25.0% |
| ! | TTAAGGATCTAAGGAAAATT+TGG | + | chr7.4:84350668-84350687 | MS.gene53855:CDS | 25.0% |
| !! | AAAGACTATTGATAACATTG+AGG | - | chr7.4:84351484-84351503 | None:intergenic | 25.0% |
| !! | ATAATGCATAGCATAAGTTT+TGG | - | chr7.4:84351309-84351328 | None:intergenic | 25.0% |
| !! | CAGTGTTATTGATTATTTGA+TGG | + | chr7.4:84349837-84349856 | MS.gene53855:CDS | 25.0% |
| !! | CATTGATTGTGTATATGAAT+TGG | + | chr7.4:84349575-84349594 | MS.gene53855:intron | 25.0% |
| !! | GATGTTTTCATAAGTTATTC+TGG | - | chr7.4:84351264-84351283 | None:intergenic | 25.0% |
| !! | GTAATCTTTTCATGGTATTA+GGG | + | chr7.4:84350044-84350063 | MS.gene53855:intron | 25.0% |
| !! | TATCTTTTAGCAATAAGTGA+AGG | + | chr7.4:84351105-84351124 | MS.gene53855:intron | 25.0% |
| !! | TGTAATCTTTTCATGGTATT+AGG | + | chr7.4:84350043-84350062 | MS.gene53855:intron | 25.0% |
| !! | TTAGTTGTGTAATCTTTTCA+TGG | + | chr7.4:84350036-84350055 | MS.gene53855:intron | 25.0% |
| !!! | GAATCTGTTTCTTTTAGATT+TGG | + | chr7.4:84349957-84349976 | MS.gene53855:intron | 25.0% |
| !!! | TGTAGCTTTCTTTTAAGATT+TGG | + | chr7.4:84351071-84351090 | MS.gene53855:intron | 25.0% |
| !!! | TTTCATTTTTAGCAGTATCA+TGG | + | chr7.4:84350097-84350116 | MS.gene53855:intron | 25.0% |
| AATAGGTAAAAGAGCAATTG+AGG | - | chr7.4:84351036-84351055 | None:intergenic | 30.0% | |
| AGCAAATAGTAACATCAACA+TGG | + | chr7.4:84351130-84351149 | MS.gene53855:intron | 30.0% | |
| ATTTCTTACTGTGGTAGTTT+CGG | - | chr7.4:84350484-84350503 | None:intergenic | 30.0% | |
| CACTATGAACCTTTATATTG+CGG | + | chr7.4:84350129-84350148 | MS.gene53855:intron | 30.0% | |
| CGATAAATATGGAATCTTAG+AGG | + | chr7.4:84350373-84350392 | MS.gene53855:intron | 30.0% | |
| CGTTACAAAGATCTCAAATT+CGG | + | chr7.4:84350192-84350211 | MS.gene53855:intron | 30.0% | |
| CTTTATATTGCGGAAAAATG+TGG | + | chr7.4:84350139-84350158 | MS.gene53855:intron | 30.0% | |
| GAATGACAATTCATTAGGTA+TGG | + | chr7.4:84350951-84350970 | MS.gene53855:intron | 30.0% | |
| TTCAGAAACTCGTGATAAAA+AGG | - | chr7.4:84349665-84349684 | None:intergenic | 30.0% | |
| TTCTCATAACTGAATGTATG+CGG | - | chr7.4:84350928-84350947 | None:intergenic | 30.0% | |
| ! | CACATTTTTCCGCAATATAA+AGG | - | chr7.4:84350141-84350160 | None:intergenic | 30.0% |
| ! | CGAATTTGAGATCTTTGTAA+CGG | - | chr7.4:84350194-84350213 | None:intergenic | 30.0% |
| ! | GACAGTGTTAGTTTATTTAC+AGG | - | chr7.4:84350790-84350809 | None:intergenic | 30.0% |
| !! | AACAAAGGTTGATTTTCTGT+TGG | + | chr7.4:84349869-84349888 | MS.gene53855:CDS | 30.0% |
| !! | ACAAAGGTTGATTTTCTGTT+GGG | + | chr7.4:84349870-84349889 | MS.gene53855:CDS | 30.0% |
| !! | ATATTGTTTTTCCACATCCA+AGG | + | chr7.4:84349191-84349210 | MS.gene53855:CDS | 30.0% |
| !! | TGCATTGCTTTTAGCATAAT+TGG | + | chr7.4:84350556-84350575 | MS.gene53855:intron | 30.0% |
| !!! | CTTTTTTAGTAAGCTATCAC+AGG | - | chr7.4:84351201-84351220 | None:intergenic | 30.0% |
| !!! | TTTTTTCTCACATGCTTTCA+TGG | - | chr7.4:84349242-84349261 | None:intergenic | 30.0% |
| AGTATGATCCAAATCTTCCT+TGG | + | chr7.4:84350695-84350714 | MS.gene53855:CDS | 35.0% | |
| CACTGAAACAAGTGAATCTT+GGG | + | chr7.4:84351451-84351470 | MS.gene53855:CDS | 35.0% | |
| CGTATATTTGTAAACTCGGA+AGG | + | chr7.4:84350988-84351007 | MS.gene53855:intron | 35.0% | |
| CTAGCTATACAACGCTTATA+TGG | - | chr7.4:84350242-84350261 | None:intergenic | 35.0% | |
| CTTAGATCCTTAAAAACCAG+TGG | - | chr7.4:84350661-84350680 | None:intergenic | 35.0% | |
| GATTTACGACAATATCTGGA+TGG | + | chr7.4:84351365-84351384 | MS.gene53855:CDS | 35.0% | |
| GTAAAAGAGCAATTGAGGAA+GGG | - | chr7.4:84351031-84351050 | None:intergenic | 35.0% | |
| GTATGATCCAAATCTTCCTT+GGG | + | chr7.4:84350696-84350715 | MS.gene53855:CDS | 35.0% | |
| GTCACTACAGTCGATAAATA+TGG | + | chr7.4:84350362-84350381 | MS.gene53855:intron | 35.0% | |
| TATGTAGAGCAACATCCATT+TGG | + | chr7.4:84351416-84351435 | MS.gene53855:CDS | 35.0% | |
| TCACTGAAACAAGTGAATCT+TGG | + | chr7.4:84351450-84351469 | MS.gene53855:CDS | 35.0% | |
| ! | TAAGCGTTGTATAGCTAGTT+CGG | + | chr7.4:84350244-84350263 | MS.gene53855:intron | 35.0% |
| !!! | CACTGGTTTTTAAGGATCTA+AGG | + | chr7.4:84350659-84350678 | MS.gene53855:CDS | 35.0% |
| ACACCTTCAGTTTGGATTGT+CGG | + | chr7.4:84349489-84349508 | MS.gene53855:intron | 40.0% | |
| ACCATCCGATCTTTGACATA+TGG | + | chr7.4:84350458-84350477 | MS.gene53855:intron | 40.0% | |
| ACTGGCAACTGCTGAAAATA+TGG | + | chr7.4:84351388-84351407 | MS.gene53855:CDS | 40.0% | |
| AGCCATCACATATTGTGACA+TGG | + | chr7.4:84350847-84350866 | MS.gene53855:intron | 40.0% | |
| AGCCATGTCACAATATGTGA+TGG | - | chr7.4:84350852-84350871 | None:intergenic | 40.0% | |
| GGTAAAAGAGCAATTGAGGA+AGG | - | chr7.4:84351032-84351051 | None:intergenic | 40.0% | |
| GTGATACGTTCTTGACCAAA+TGG | - | chr7.4:84351434-84351453 | None:intergenic | 40.0% | |
| TCCCATGTTGTGTCGAAAAT+CGG | + | chr7.4:84349464-84349483 | MS.gene53855:intron | 40.0% | |
| TGATGGGAGACATGAAACAA+AGG | + | chr7.4:84349854-84349873 | MS.gene53855:CDS | 40.0% | |
| TGCTGACAGCAAATCATGAT+AGG | + | chr7.4:84350503-84350522 | MS.gene53855:intron | 40.0% | |
| TGGCGATTTACGACAATATC+TGG | + | chr7.4:84351361-84351380 | MS.gene53855:CDS | 40.0% | |
| TTCATCAACACGTTGACCAT+AGG | - | chr7.4:84350878-84350897 | None:intergenic | 40.0% | |
| TTCATGGCTATGAATGCATC+TGG | - | chr7.4:84349226-84349245 | None:intergenic | 40.0% | |
| TTCGGCCATATGTCAAAGAT+CGG | - | chr7.4:84350466-84350485 | None:intergenic | 40.0% | |
| TTGTGACATGGCTTAACCTA+TGG | + | chr7.4:84350859-84350878 | MS.gene53855:intron | 40.0% | |
| ! | TCCGATTTTCGACACAACAT+GGG | - | chr7.4:84349468-84349487 | None:intergenic | 40.0% |
| ! | TGTTTTCCTCAGTATTCGAG+AGG | + | chr7.4:84349639-84349658 | MS.gene53855:intron | 40.0% |
| !! | CTGCTTTGAGAGATTTGAAG+TGG | + | chr7.4:84349688-84349707 | MS.gene53855:CDS | 40.0% |
| AAAAGGCCTCTCGAATACTG+AGG | - | chr7.4:84349648-84349667 | None:intergenic | 45.0% | |
| AATCGGACACACCTTCAGTT+TGG | + | chr7.4:84349481-84349500 | MS.gene53855:intron | 45.0% | |
| ACGACAATATCTGGATGGAC+TGG | + | chr7.4:84351370-84351389 | MS.gene53855:CDS | 45.0% | |
| ATCCAAATCTTCCTTGGGAG+AGG | + | chr7.4:84350701-84350720 | MS.gene53855:CDS | 45.0% | |
| CGTTGTATAGCTAGTTCGGT+AGG | + | chr7.4:84350248-84350267 | MS.gene53855:intron | 45.0% | |
| GCCATATGTCAAAGATCGGA+TGG | - | chr7.4:84350462-84350481 | None:intergenic | 45.0% | |
| GCTGTCAGCATTTCTTACTG+TGG | - | chr7.4:84350493-84350512 | None:intergenic | 45.0% | |
| GGTTTAACATGCCTTGGATG+TGG | - | chr7.4:84349205-84349224 | None:intergenic | 45.0% | |
| TCCAAATCTTCCTTGGGAGA+GGG | + | chr7.4:84350702-84350721 | MS.gene53855:CDS | 45.0% | |
| TGAGTCAAACACATTGCTGC+TGG | + | chr7.4:84350735-84350754 | MS.gene53855:CDS | 45.0% | |
| TGTAGTGACTGCAGACAATC+TGG | - | chr7.4:84350351-84350370 | None:intergenic | 45.0% | |
| TTGTAATATCCCCTCTCCCA+AGG | - | chr7.4:84350715-84350734 | None:intergenic | 45.0% | |
| ! | AGAGATTTGAAGTGGCTGTG+TGG | + | chr7.4:84349696-84349715 | MS.gene53855:CDS | 45.0% |
| ! | GCATCTGGTTTAACATGCCT+TGG | - | chr7.4:84349211-84349230 | None:intergenic | 45.0% |
| ! | GTCCGATTTTCGACACAACA+TGG | - | chr7.4:84349469-84349488 | None:intergenic | 45.0% |
| ! | TGCGGAAAGATTGAGTTGTG+TGG | - | chr7.4:84350910-84350929 | None:intergenic | 45.0% |
| ! | TGTTTTTCGTCAGCTGCTGA+TGG | + | chr7.4:84351341-84351360 | MS.gene53855:intron | 45.0% |
| !! | TTGGATTGTCGGTGCTACAT+AGG | + | chr7.4:84349500-84349519 | MS.gene53855:intron | 45.0% |
| CCAAATCTTCCTTGGGAGAG+GGG | + | chr7.4:84350703-84350722 | MS.gene53855:CDS | 50.0% | |
| GCTGGATGATTCTCCGTACA+AGG | + | chr7.4:84350753-84350772 | MS.gene53855:CDS | 50.0% | |
| GGATTAAGCAGCGCCTTGTA+CGG | - | chr7.4:84350769-84350788 | None:intergenic | 50.0% | |
| GGTCTCGCAAGTGGTTATGT+CGG | - | chr7.4:84351180-84351199 | None:intergenic | 50.0% | |
| ! | GCACCGACAATCCAAACTGA+AGG | - | chr7.4:84349495-84349514 | None:intergenic | 50.0% |
| !!! | GCGCAAGCCACTGGTTTTTA+AGG | + | chr7.4:84350651-84350670 | MS.gene53855:CDS | 50.0% |
| CCCCTCTCCCAAGGAAGATT+TGG | - | chr7.4:84350706-84350725 | None:intergenic | 55.0% | |
| GCTATCACAGGTCTCGCAAG+TGG | - | chr7.4:84351189-84351208 | None:intergenic | 55.0% | |
| CGAGAACAAGCGCAAGCCAC+TGG | + | chr7.4:84350642-84350661 | MS.gene53855:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 84349004 | 84351526 | 84349004 | ID=MS.gene53855 |
| chr7.4 | mRNA | 84349004 | 84351526 | 84349004 | ID=MS.gene53855.t1;Parent=MS.gene53855 |
| chr7.4 | exon | 84349004 | 84349250 | 84349004 | ID=MS.gene53855.t1.exon1;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84349004 | 84349250 | 84349004 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| chr7.4 | exon | 84349651 | 84349732 | 84349651 | ID=MS.gene53855.t1.exon2;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84349651 | 84349732 | 84349651 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| chr7.4 | exon | 84349825 | 84349891 | 84349825 | ID=MS.gene53855.t1.exon3;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84349825 | 84349891 | 84349825 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| chr7.4 | exon | 84350604 | 84350789 | 84350604 | ID=MS.gene53855.t1.exon4;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84350604 | 84350789 | 84350604 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| chr7.4 | exon | 84350907 | 84350967 | 84350907 | ID=MS.gene53855.t1.exon5;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84350907 | 84350967 | 84350907 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| chr7.4 | exon | 84351354 | 84351526 | 84351354 | ID=MS.gene53855.t1.exon6;Parent=MS.gene53855.t1 |
| chr7.4 | CDS | 84351354 | 84351526 | 84351354 | ID=cds.MS.gene53855.t1;Parent=MS.gene53855.t1 |
| Gene Sequence |
| Protein sequence |
