Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54201.t1 | XP_003611409.1 | 97.8 | 496 | 11 | 0 | 1 | 496 | 48 | 543 | 4.20E-290 | 1006.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54201.t1 | O23553 | 73.2 | 504 | 124 | 5 | 1 | 496 | 48 | 548 | 5.9e-224 | 778.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54201.t1 | G7JYN3 | 97.8 | 496 | 11 | 0 | 1 | 496 | 48 | 543 | 3.1e-290 | 1006.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene54201 | 0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene54201 | -0.827889 | 1.22E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene54201 | 0.804313 | 2.29E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene54201 | 0.830254 | 3.26E-55 | -1.69E-46 |
| MS.gene052589 | MS.gene54201 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene052590 | MS.gene54201 | 0.829963 | 3.84E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene54201 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene54201 | 0.810826 | 9.50E-51 | -1.69E-46 |
| MS.gene059247 | MS.gene54201 | 0.809806 | 1.58E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene54201 | 0.829427 | 5.18E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54201.t1 | MTR_5g013640 | 97.782 | 496 | 11 | 0 | 1 | 496 | 48 | 543 | 0.0 | 1021 |
| MS.gene54201.t1 | MTR_5g013620 | 93.750 | 496 | 29 | 1 | 1 | 496 | 50 | 543 | 0.0 | 985 |
| MS.gene54201.t1 | MTR_4g099110 | 76.735 | 490 | 107 | 2 | 14 | 496 | 52 | 541 | 0.0 | 802 |
| MS.gene54201.t1 | MTR_6g477780 | 62.281 | 342 | 117 | 2 | 132 | 461 | 10 | 351 | 1.37e-163 | 468 |
| MS.gene54201.t1 | MTR_4g045667 | 49.885 | 435 | 201 | 4 | 38 | 458 | 11 | 442 | 8.04e-156 | 452 |
| MS.gene54201.t1 | MTR_2g089030 | 50.000 | 436 | 201 | 4 | 37 | 458 | 83 | 515 | 3.19e-150 | 442 |
| MS.gene54201.t1 | MTR_8g099775 | 46.389 | 457 | 226 | 7 | 26 | 465 | 62 | 516 | 3.15e-139 | 412 |
| MS.gene54201.t1 | MTR_7g077410 | 46.188 | 446 | 223 | 6 | 26 | 458 | 251 | 692 | 6.20e-125 | 380 |
| MS.gene54201.t1 | MTR_2g020240 | 39.421 | 449 | 259 | 5 | 27 | 470 | 70 | 510 | 1.88e-108 | 333 |
| MS.gene54201.t1 | MTR_5g026210 | 37.500 | 464 | 270 | 9 | 10 | 461 | 189 | 644 | 4.31e-103 | 322 |
| MS.gene54201.t1 | MTR_2g020240 | 38.947 | 380 | 220 | 4 | 95 | 470 | 4 | 375 | 1.80e-91 | 285 |
| MS.gene54201.t1 | MTR_5g026210 | 39.692 | 325 | 186 | 7 | 10 | 332 | 189 | 505 | 8.38e-79 | 255 |
| MS.gene54201.t1 | MTR_5g026210 | 40.217 | 276 | 159 | 5 | 10 | 283 | 189 | 460 | 8.06e-67 | 223 |
| MS.gene54201.t1 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 40 | 132 | 106 | 198 | 8.07e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54201.t1 | AT4G17090 | 73.611 | 504 | 122 | 5 | 1 | 496 | 48 | 548 | 0.0 | 786 |
| MS.gene54201.t1 | AT3G23920 | 64.679 | 436 | 140 | 2 | 40 | 461 | 106 | 541 | 0.0 | 607 |
| MS.gene54201.t1 | AT4G15210 | 48.853 | 436 | 205 | 5 | 38 | 458 | 12 | 444 | 2.56e-149 | 436 |
| MS.gene54201.t1 | AT4G15210 | 51.637 | 397 | 187 | 4 | 31 | 425 | 5 | 398 | 5.18e-147 | 427 |
| MS.gene54201.t1 | AT2G32290 | 48.276 | 435 | 209 | 5 | 37 | 458 | 75 | 506 | 1.65e-140 | 416 |
| MS.gene54201.t1 | AT4G00490 | 48.409 | 440 | 210 | 6 | 40 | 466 | 95 | 530 | 2.74e-140 | 415 |
| MS.gene54201.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 7.99e-139 | 407 |
| MS.gene54201.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 7.99e-139 | 407 |
| MS.gene54201.t1 | AT5G55700 | 44.064 | 438 | 228 | 4 | 39 | 459 | 91 | 528 | 5.76e-132 | 393 |
| MS.gene54201.t1 | AT2G45880 | 44.796 | 442 | 227 | 6 | 27 | 455 | 235 | 672 | 8.99e-123 | 375 |
| MS.gene54201.t1 | AT5G55700 | 45.566 | 327 | 165 | 3 | 146 | 459 | 39 | 365 | 8.28e-100 | 305 |
| MS.gene54201.t1 | AT5G45300 | 39.367 | 442 | 250 | 8 | 32 | 461 | 245 | 680 | 1.46e-99 | 314 |
| MS.gene54201.t1 | AT5G45300 | 39.367 | 442 | 250 | 8 | 32 | 461 | 247 | 682 | 1.46e-99 | 314 |
| MS.gene54201.t1 | AT5G45300 | 39.367 | 442 | 250 | 8 | 32 | 461 | 261 | 696 | 1.67e-99 | 315 |
| MS.gene54201.t1 | AT5G18670 | 38.407 | 427 | 245 | 4 | 40 | 459 | 87 | 502 | 1.67e-90 | 286 |
Find 120 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5.1:-6518644 | MS.gene54201:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.1:+6517761 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.1:+6518207 | None:intergenic |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5.1:-6517306 | MS.gene54201:CDS |
| ATGGTCCTATGAATTATAAT+TGG | 0.239981 | 5.1:-6519099 | MS.gene54201:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5.1:-6518018 | MS.gene54201:intron |
| TTGGTTTACACGGACAAATT+AGG | 0.280825 | 5.1:-6518769 | MS.gene54201:CDS |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5.1:+6517800 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5.1:-6517298 | MS.gene54201:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.1:-6518192 | MS.gene54201:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.1:-6519131 | MS.gene54201:CDS |
| GGAACATGGAATACAGAATA+TGG | 0.310076 | 5.1:-6517888 | MS.gene54201:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.1:-6517927 | MS.gene54201:CDS |
| GGTTGCTTGAAGGTGAAAAT+TGG | 0.317020 | 5.1:-6517410 | MS.gene54201:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.324491 | 5.1:+6518180 | None:intergenic |
| GAAGCATCAGCTGCCGCAAT+TGG | 0.335419 | 5.1:-6517996 | MS.gene54201:CDS |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5.1:-6518198 | MS.gene54201:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.346178 | 5.1:-6517336 | MS.gene54201:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.1:-6517869 | MS.gene54201:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5.1:-6518994 | MS.gene54201:intron |
| TGGTTTACACGGACAAATTA+GGG | 0.360131 | 5.1:-6518768 | MS.gene54201:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.1:+6517663 | None:intergenic |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5.1:+6517588 | None:intergenic |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5.1:-6519185 | MS.gene54201:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5.1:-6518643 | MS.gene54201:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5.1:+6519229 | None:intergenic |
| CATCCCAGTGAGATATATTC+AGG | 0.390835 | 5.1:+6518736 | None:intergenic |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.1:-6517489 | MS.gene54201:CDS |
| CATATCTAAGAATAAATAAG+AGG | 0.406737 | 5.1:-6517431 | MS.gene54201:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.1:-6517761 | MS.gene54201:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.420878 | 5.1:-6517397 | MS.gene54201:CDS |
| GCTTCCCAATTATAATTCAT+AGG | 0.422256 | 5.1:+6519094 | None:intergenic |
| CTGATTTCTTCCATCACCCA+TGG | 0.422552 | 5.1:+6518805 | None:intergenic |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5.1:-6518261 | MS.gene54201:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5.1:-6518695 | MS.gene54201:CDS |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.429269 | 5.1:-6519160 | MS.gene54201:CDS |
| ACGGAAGCTTCTCATATAAT+CGG | 0.432975 | 5.1:+6518666 | None:intergenic |
| TATGGAACTGATCTTTATGT+TGG | 0.435975 | 5.1:-6517318 | MS.gene54201:CDS |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5.1:-6517514 | MS.gene54201:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5.1:-6519341 | MS.gene54201:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5.1:+6518703 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.1:+6518208 | None:intergenic |
| CATGGGTGATGGAAGAAATC+AGG | 0.453663 | 5.1:-6518804 | MS.gene54201:CDS |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5.1:-6517622 | MS.gene54201:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.1:-6517771 | MS.gene54201:CDS |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5.1:+6517567 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5.1:-6517543 | MS.gene54201:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5.1:-6518822 | MS.gene54201:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.1:+6518216 | None:intergenic |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.467245 | 5.1:-6519169 | MS.gene54201:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.1:-6519137 | MS.gene54201:CDS |
| TGGTCCTATGAATTATAATT+GGG | 0.482229 | 5.1:-6519098 | MS.gene54201:CDS |
| AAATCCTGAATATATCTCAC+TGG | 0.483131 | 5.1:-6518740 | MS.gene54201:CDS |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5.1:-6517528 | MS.gene54201:CDS |
| TCCATCACCCATGGAGGTAG+AGG | 0.485439 | 5.1:+6518814 | None:intergenic |
| ATAAATAAGAGGTTGCTTGA+AGG | 0.486643 | 5.1:-6517420 | MS.gene54201:CDS |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5.1:-6517631 | MS.gene54201:CDS |
| TCCTCTACCTCCATGGGTGA+TGG | 0.488299 | 5.1:-6518815 | MS.gene54201:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.1:-6518209 | MS.gene54201:CDS |
| TTTGTACCTTGTCATAACAT+TGG | 0.496838 | 5.1:+6518163 | None:intergenic |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5.1:-6517559 | MS.gene54201:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5.1:-6517577 | MS.gene54201:CDS |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5.1:-6519229 | MS.gene54201:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5.1:-6517798 | MS.gene54201:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.1:-6519138 | MS.gene54201:CDS |
| AAGCATCAGCTGCCGCAATT+GGG | 0.510467 | 5.1:-6517995 | MS.gene54201:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.1:-6519007 | MS.gene54201:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.1:-6519071 | MS.gene54201:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.1:-6519136 | MS.gene54201:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5.1:-6518712 | MS.gene54201:CDS |
| CCACTCTTTCTTCCCAATTG+CGG | 0.529912 | 5.1:+6517983 | None:intergenic |
| TAGCATTCCTCTACCTCCAT+GGG | 0.534553 | 5.1:-6518821 | MS.gene54201:CDS |
| TTGTCCGTGTAAACCAACTC+AGG | 0.538197 | 5.1:+6518775 | None:intergenic |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.1:-6518216 | MS.gene54201:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5.1:-6519230 | MS.gene54201:CDS |
| CAGTTAAGGAAAACAAGAGA+TGG | 0.540014 | 5.1:-6519327 | MS.gene54201:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.540672 | 5.1:+6518682 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5.1:-6519152 | MS.gene54201:CDS |
| AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5.1:-6518788 | MS.gene54201:CDS |
| TGCTTGAAGGTGAAAATTGG+AGG | 0.550977 | 5.1:-6517407 | MS.gene54201:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.1:+6517856 | None:intergenic |
| GAACCCTGAGTTGGTTTACA+CGG | 0.553776 | 5.1:-6518779 | MS.gene54201:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.1:-6517693 | MS.gene54201:CDS |
| CCGCAATTGGGAAGAAAGAG+TGG | 0.559917 | 5.1:-6517983 | MS.gene54201:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5.1:-6517704 | MS.gene54201:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.1:-6519141 | MS.gene54201:CDS |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5.1:-6517582 | MS.gene54201:CDS |
| AGTTAAGGAAAACAAGAGAT+GGG | 0.578306 | 5.1:-6519326 | MS.gene54201:CDS |
| CGCAATTGGGAAGAAAGAGT+GGG | 0.579608 | 5.1:-6517982 | MS.gene54201:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.1:-6517657 | MS.gene54201:CDS |
| AATAATCTGTAAATCTGTCA+CGG | 0.588821 | 5.1:+6518647 | None:intergenic |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5.1:-6517720 | MS.gene54201:CDS |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5.1:-6517972 | MS.gene54201:CDS |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5.1:-6518268 | MS.gene54201:intron |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.1:+6518237 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5.1:-6519266 | MS.gene54201:CDS |
| AATCCTGAATATATCTCACT+GGG | 0.599678 | 5.1:-6518739 | MS.gene54201:CDS |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5.1:-6518251 | MS.gene54201:CDS |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5.1:-6517957 | MS.gene54201:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5.1:-6517372 | MS.gene54201:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.1:-6517843 | MS.gene54201:CDS |
| TGTCCGTGTAAACCAACTCA+GGG | 0.634904 | 5.1:+6518776 | None:intergenic |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5.1:-6517369 | MS.gene54201:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5.1:-6518267 | MS.gene54201:intron |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5.1:-6518252 | MS.gene54201:CDS |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5.1:+6517948 | None:intergenic |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5.1:+6519289 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.1:+6519247 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5.1:-6519226 | MS.gene54201:CDS |
| ATTTCTTCCATCACCCATGG+AGG | 0.672048 | 5.1:+6518808 | None:intergenic |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5.1:-6519365 | MS.gene54201:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5.1:-6517540 | MS.gene54201:CDS |
| AGAATTCCAATGTTATGACA+AGG | 0.679414 | 5.1:-6518169 | MS.gene54201:intron |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5.1:+6519272 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5.1:-6517934 | MS.gene54201:CDS |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5.1:-6517359 | MS.gene54201:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5.1:-6519239 | MS.gene54201:CDS |
| TTTACACGGACAAATTAGGG+AGG | 0.705506 | 5.1:-6518765 | MS.gene54201:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5.1:-6518250 | MS.gene54201:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.714858 | 5.1:-6517981 | MS.gene54201:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATCTAAGACTAATT+TGG | - | chr5.1:6517770-6517789 | MS.gene54201:CDS | 15.0% |
| !!! | TTATAAGATGAATACTTTTT+GGG | - | chr5.1:6518274-6518293 | MS.gene54201:intron | 15.0% |
| !!! | TTTATAAGATGAATACTTTT+TGG | - | chr5.1:6518273-6518292 | MS.gene54201:intron | 15.0% |
| !! | CATATCTAAGAATAAATAAG+AGG | - | chr5.1:6519199-6519218 | MS.gene54201:CDS | 20.0% |
| !!! | GTCTAACATTAATATGATTT+TGG | + | chr5.1:6518529-6518548 | None:intergenic | 20.0% |
| !!! | TAGTCTTAGATTTTTATGTT+TGG | + | chr5.1:6517767-6517786 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | chr5.1:6518595-6518614 | None:intergenic | 20.0% |
| ! | AATAATCTGTAAATCTGTCA+CGG | + | chr5.1:6517986-6518005 | None:intergenic | 25.0% |
| ! | ACAAAATTGAATTATGAGCT+AGG | + | chr5.1:6518249-6518268 | None:intergenic | 25.0% |
| ! | ATGATGATAAAACTAAGACT+TGG | - | chr5.1:6518308-6518327 | MS.gene54201:intron | 25.0% |
| ! | ATGGTCCTATGAATTATAAT+TGG | - | chr5.1:6517531-6517550 | MS.gene54201:CDS | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5.1:6519294-6519313 | MS.gene54201:CDS | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5.1:6517987-6518006 | MS.gene54201:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | chr5.1:6517685-6517704 | MS.gene54201:CDS | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5.1:6518999-6519018 | MS.gene54201:CDS | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5.1:6517986-6518005 | MS.gene54201:CDS | 25.0% |
| ! | TGGTCCTATGAATTATAATT+GGG | - | chr5.1:6517532-6517551 | MS.gene54201:CDS | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5.1:6518832-6518851 | MS.gene54201:intron | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5.1:6518833-6518852 | None:intergenic | 25.0% |
| AAATCCTGAATATATCTCAC+TGG | - | chr5.1:6517890-6517909 | MS.gene54201:CDS | 30.0% | |
| AATCCTGAATATATCTCACT+GGG | - | chr5.1:6517891-6517910 | MS.gene54201:CDS | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5.1:6518612-6518631 | MS.gene54201:intron | 30.0% | |
| AGAATTCCAATGTTATGACA+AGG | - | chr5.1:6518461-6518480 | MS.gene54201:intron | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.1:6519141-6519160 | MS.gene54201:CDS | 30.0% | |
| AGTTAAGGAAAACAAGAGAT+GGG | - | chr5.1:6517304-6517323 | MS.gene54201:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+AGG | - | chr5.1:6519210-6519229 | MS.gene54201:CDS | 30.0% | |
| ATTAAGACCAAATTGTTTGC+AGG | - | chr5.1:6518350-6518369 | MS.gene54201:intron | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | - | chr5.1:6519071-6519090 | MS.gene54201:CDS | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | - | chr5.1:6519324-6519343 | MS.gene54201:CDS | 30.0% | |
| GCTTCCCAATTATAATTCAT+AGG | + | chr5.1:6517539-6517558 | None:intergenic | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.1:6518937-6518956 | MS.gene54201:intron | 30.0% | |
| TATGGAACTGATCTTTATGT+TGG | - | chr5.1:6519312-6519331 | MS.gene54201:CDS | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5.1:6518696-6518715 | MS.gene54201:CDS | 30.0% | |
| TCACATTTAAGAGCCTAAAT+TGG | + | chr5.1:6517701-6517720 | None:intergenic | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | chr5.1:6518360-6518379 | None:intergenic | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | - | chr5.1:6519332-6519351 | MS.gene54201:CDS | 30.0% | |
| TTTGTACCTTGTCATAACAT+TGG | + | chr5.1:6518470-6518489 | None:intergenic | 30.0% | |
| ! | GTATCTAAGACGTTACAATA+AGG | + | chr5.1:6518180-6518199 | None:intergenic | 30.0% |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5.1:6517611-6517630 | MS.gene54201:CDS | 30.0% |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | chr5.1:6518716-6518735 | MS.gene54201:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | chr5.1:6518717-6518736 | MS.gene54201:CDS | 30.0% |
| AAACACCAACTCTACAGTTA+AGG | - | chr5.1:6517289-6517308 | MS.gene54201:CDS | 35.0% | |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5.1:6518859-6518878 | MS.gene54201:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5.1:6518703-6518722 | MS.gene54201:CDS | 35.0% | |
| ACGGAAGCTTCTCATATAAT+CGG | + | chr5.1:6517967-6517986 | None:intergenic | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5.1:6519066-6519085 | None:intergenic | 35.0% | |
| AGATGGGTGATTAAGATACT+TGG | - | chr5.1:6518063-6518082 | MS.gene54201:intron | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.1:6518761-6518780 | MS.gene54201:CDS | 35.0% | |
| CAGTTAAGGAAAACAAGAGA+TGG | - | chr5.1:6517303-6517322 | MS.gene54201:CDS | 35.0% | |
| CATTTAAGAGCCTAAATTGG+TGG | + | chr5.1:6517698-6517717 | None:intergenic | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5.1:6518869-6518888 | MS.gene54201:intron | 35.0% | |
| GCAAGAAACACATTTCACAA+AGG | - | chr5.1:6517265-6517284 | MS.gene54201:CDS | 35.0% | |
| GGAACATGGAATACAGAATA+TGG | - | chr5.1:6518742-6518761 | MS.gene54201:CDS | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | + | chr5.1:6519045-6519064 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5.1:6517572-6517591 | MS.gene54201:CDS | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5.1:6519053-6519072 | MS.gene54201:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5.1:6519233-6519252 | MS.gene54201:CDS | 35.0% | |
| TGGTTTACACGGACAAATTA+GGG | - | chr5.1:6517862-6517881 | MS.gene54201:CDS | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | chr5.1:6518363-6518382 | MS.gene54201:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5.1:6518715-6518734 | None:intergenic | 35.0% | |
| TTGGTTTACACGGACAAATT+AGG | - | chr5.1:6517861-6517880 | MS.gene54201:CDS | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | chr5.1:6518362-6518381 | MS.gene54201:intron | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5.1:6519008-6519027 | MS.gene54201:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.1:6518970-6518989 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.1:6517445-6517464 | MS.gene54201:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.1:6517614-6517633 | MS.gene54201:CDS | 35.0% |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.1:6518872-6518891 | None:intergenic | 35.0% |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | + | chr5.1:6517297-6517316 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.1:6519258-6519277 | MS.gene54201:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5.1:6518728-6518747 | MS.gene54201:CDS | 35.0% |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5.1:6518721-6518740 | MS.gene54201:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACT+AGG | + | chr5.1:6518822-6518841 | None:intergenic | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5.1:6519291-6519310 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.1:6518787-6518806 | MS.gene54201:CDS | 35.0% |
| !!! | CTTCAGTTTTGAGGTTAGAT+GGG | - | chr5.1:6518047-6518066 | MS.gene54201:intron | 35.0% |
| AAGATGGCAACAAAGATTGC+AGG | - | chr5.1:6519087-6519106 | MS.gene54201:CDS | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5.1:6517386-6517405 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.1:6518438-6518457 | MS.gene54201:intron | 40.0% | |
| CATCCCAGTGAGATATATTC+AGG | + | chr5.1:6517897-6517916 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5.1:6518910-6518929 | MS.gene54201:intron | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | - | chr5.1:6519048-6519067 | MS.gene54201:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.1:6518453-6518472 | None:intergenic | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5.1:6517401-6517420 | MS.gene54201:CDS | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5.1:6518926-6518945 | MS.gene54201:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5.1:6518973-6518992 | MS.gene54201:intron | 40.0% | |
| GGTTGCTTGAAGGTGAAAAT+TGG | - | chr5.1:6519220-6519239 | MS.gene54201:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.1:6518777-6518796 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.1:6518425-6518444 | None:intergenic | 40.0% | |
| TGCTTGAAGGTGAAAATTGG+AGG | - | chr5.1:6519223-6519242 | MS.gene54201:CDS | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5.1:6517391-6517410 | MS.gene54201:CDS | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.1:6518426-6518445 | None:intergenic | 40.0% | |
| TTTACACGGACAAATTAGGG+AGG | - | chr5.1:6517865-6517884 | MS.gene54201:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.1:6517489-6517508 | MS.gene54201:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.1:6517493-6517512 | MS.gene54201:CDS | 40.0% |
| ! | CAACTTGTGCTTCAGTTTTG+AGG | - | chr5.1:6518038-6518057 | MS.gene54201:intron | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.1:6517623-6517642 | MS.gene54201:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.1:6517512-6517531 | MS.gene54201:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.1:6517559-6517578 | MS.gene54201:CDS | 40.0% |
| ! | TTGTATTGACCTGAGTCATG+TGG | + | chr5.1:6518685-6518704 | None:intergenic | 40.0% |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5.1:6519162-6519181 | MS.gene54201:CDS | 40.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5.1:6517364-6517383 | MS.gene54201:CDS | 40.0% |
| !!! | GCTTCAGTTTTGAGGTTAGA+TGG | - | chr5.1:6518046-6518065 | MS.gene54201:intron | 40.0% |
| AAGAAAGAGTGGGGAACAAG+TGG | - | chr5.1:6518658-6518677 | MS.gene54201:CDS | 45.0% | |
| AATCAGGAAGAACCCTGAGT+TGG | - | chr5.1:6517842-6517861 | MS.gene54201:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5.1:6518421-6518440 | MS.gene54201:intron | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5.1:6517808-6517827 | MS.gene54201:CDS | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | - | chr5.1:6519090-6519109 | MS.gene54201:CDS | 45.0% | |
| ATTTCTTCCATCACCCATGG+AGG | + | chr5.1:6517825-6517844 | None:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5.1:6518369-6518388 | MS.gene54201:intron | 45.0% | |
| CCACTCTTTCTTCCCAATTG+CGG | + | chr5.1:6518650-6518669 | None:intergenic | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.1:6518417-6518436 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5.1:6518414-6518433 | MS.gene54201:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5.1:6517404-6517423 | None:intergenic | 45.0% | |
| CGCAATTGGGAAGAAAGAGT+GGG | - | chr5.1:6518648-6518667 | MS.gene54201:CDS | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5.1:6517361-6517380 | None:intergenic | 45.0% | |
| CTGATTTCTTCCATCACCCA+TGG | + | chr5.1:6517828-6517847 | None:intergenic | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5.1:6518432-6518451 | MS.gene54201:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | chr5.1:6518649-6518668 | MS.gene54201:CDS | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5.1:6517400-6517419 | MS.gene54201:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.1:6519261-6519280 | MS.gene54201:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5.1:6517951-6517970 | None:intergenic | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5.1:6517809-6517828 | MS.gene54201:CDS | 45.0% | |
| TCGTGGTTATGAGCAATCGA+TGG | + | chr5.1:6517344-6517363 | None:intergenic | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5.1:6517478-6517497 | MS.gene54201:CDS | 45.0% | |
| TGTCCGTGTAAACCAACTCA+GGG | + | chr5.1:6517857-6517876 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5.1:6517404-6517423 | MS.gene54201:CDS | 45.0% | |
| TTGTCCGTGTAAACCAACTC+AGG | + | chr5.1:6517858-6517877 | None:intergenic | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | - | chr5.1:6519116-6519135 | MS.gene54201:CDS | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.1:6517492-6517511 | MS.gene54201:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.1:6517494-6517513 | MS.gene54201:CDS | 45.0% |
| !! | CATGGGTGATGGAAGAAATC+AGG | - | chr5.1:6517826-6517845 | MS.gene54201:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5.1:6517636-6517655 | MS.gene54201:CDS | 45.0% |
| !! | GAACCCTGAGTTGGTTTACA+CGG | - | chr5.1:6517851-6517870 | MS.gene54201:CDS | 45.0% |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5.1:6519271-6519290 | MS.gene54201:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5.1:6517470-6517489 | MS.gene54201:CDS | 45.0% |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5.1:6517461-6517480 | MS.gene54201:CDS | 45.0% |
| AAGCATCAGCTGCCGCAATT+GGG | - | chr5.1:6518635-6518654 | MS.gene54201:CDS | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5.1:6518379-6518398 | MS.gene54201:intron | 50.0% | |
| ACAAGTGGACCACATGACTC+AGG | - | chr5.1:6518673-6518692 | MS.gene54201:CDS | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5.1:6517935-6517954 | MS.gene54201:CDS | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | - | chr5.1:6519102-6519121 | MS.gene54201:CDS | 50.0% | |
| CCGCAATTGGGAAGAAAGAG+TGG | - | chr5.1:6518647-6518666 | MS.gene54201:CDS | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5.1:6517918-6517937 | MS.gene54201:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5.1:6517930-6517949 | None:intergenic | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5.1:6518396-6518415 | None:intergenic | 50.0% | |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5.1:6518380-6518399 | MS.gene54201:intron | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5.1:6518378-6518397 | MS.gene54201:intron | 55.0% | |
| TCCATCACCCATGGAGGTAG+AGG | + | chr5.1:6517819-6517838 | None:intergenic | 55.0% | |
| TCCTCTACCTCCATGGGTGA+TGG | - | chr5.1:6517815-6517834 | MS.gene54201:CDS | 55.0% | |
| ! | GAAGCATCAGCTGCCGCAAT+TGG | - | chr5.1:6518634-6518653 | MS.gene54201:CDS | 55.0% |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.1:6517499-6517518 | MS.gene54201:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6517263 | 6519389 | 6517263 | ID=MS.gene54201 |
| chr5.1 | mRNA | 6517263 | 6519389 | 6517263 | ID=MS.gene54201.t1;Parent=MS.gene54201 |
| chr5.1 | exon | 6518995 | 6519389 | 6518995 | ID=MS.gene54201.t1.exon1;Parent=MS.gene54201.t1 |
| chr5.1 | CDS | 6518995 | 6519389 | 6518995 | ID=cds.MS.gene54201.t1;Parent=MS.gene54201.t1 |
| chr5.1 | exon | 6518630 | 6518840 | 6518630 | ID=MS.gene54201.t1.exon2;Parent=MS.gene54201.t1 |
| chr5.1 | CDS | 6518630 | 6518840 | 6518630 | ID=cds.MS.gene54201.t1;Parent=MS.gene54201.t1 |
| chr5.1 | exon | 6518170 | 6518280 | 6518170 | ID=MS.gene54201.t1.exon3;Parent=MS.gene54201.t1 |
| chr5.1 | CDS | 6518170 | 6518280 | 6518170 | ID=cds.MS.gene54201.t1;Parent=MS.gene54201.t1 |
| chr5.1 | exon | 6517263 | 6518036 | 6517263 | ID=MS.gene54201.t1.exon4;Parent=MS.gene54201.t1 |
| chr5.1 | CDS | 6517263 | 6518036 | 6517263 | ID=cds.MS.gene54201.t1;Parent=MS.gene54201.t1 |
| Gene Sequence |
| Protein sequence |
