Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54239.t1 | XP_003619714.2 | 66.4 | 262 | 84 | 1 | 60 | 321 | 51 | 308 | 3.00E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54239.t1 | G7KNU8 | 66.4 | 262 | 84 | 1 | 60 | 321 | 51 | 308 | 2.2e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54239 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene54239 | 0.822203 | 2.69E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene54239 | 0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene54239 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene055310 | MS.gene54239 | 0.803359 | 3.62E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene54239 | 0.807546 | 4.80E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene54239 | 0.809387 | 1.94E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene54239 | 0.831521 | 1.59E-55 | -1.69E-46 |
| MS.gene058647 | MS.gene54239 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene54239 | 0.801156 | 1.03E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54239.t1 | MTR_6g065070 | 66.794 | 262 | 83 | 1 | 60 | 321 | 51 | 308 | 5.28e-104 | 320 |
| MS.gene54239.t1 | MTR_1g077090 | 36.697 | 327 | 148 | 9 | 47 | 321 | 70 | 389 | 4.61e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54239.t1 | AT5G08450 | 30.128 | 312 | 161 | 12 | 47 | 321 | 193 | 484 | 1.20e-16 | 81.3 |
| MS.gene54239.t1 | AT5G08450 | 30.128 | 312 | 161 | 12 | 47 | 321 | 193 | 484 | 1.20e-16 | 81.3 |
| MS.gene54239.t1 | AT5G08450 | 30.128 | 312 | 161 | 12 | 47 | 321 | 193 | 484 | 1.20e-16 | 81.3 |
Find 65 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTCTTGATCTTCTT+TGG | 0.209794 | 6.2:-70122200 | None:intergenic |
| AAGCATCTACATCAAGATTC+AGG | 0.252056 | 6.2:+70121483 | MS.gene54239:CDS |
| ACTGACAAGCAAGGGTTATT+TGG | 0.254751 | 6.2:+70121427 | MS.gene54239:CDS |
| TCTTTGTGTTTCTTCTGTTC+TGG | 0.270053 | 6.2:-70122395 | None:intergenic |
| ATGACTATCCCTTTCATGTC+TGG | 0.354344 | 6.2:-70121796 | None:intergenic |
| TGATTCTCCTGGTGGGAGTT+TGG | 0.355744 | 6.2:+70121923 | MS.gene54239:CDS |
| AGAATCCAACCGCAAAAGAT+AGG | 0.366718 | 6.2:+70121994 | MS.gene54239:CDS |
| TTCTCCTTTCCAACTTCTGT+TGG | 0.374400 | 6.2:-70121975 | None:intergenic |
| TTTCGAGTCTTTCCAATTCA+AGG | 0.406758 | 6.2:-70121877 | None:intergenic |
| TGGTTAGCAGCCCCTTGAAT+TGG | 0.421216 | 6.2:+70121865 | MS.gene54239:CDS |
| CATCGATTGGAACTGATAAC+AGG | 0.421559 | 6.2:+70121682 | MS.gene54239:CDS |
| AAGACAGAGAAGGTCACATT+TGG | 0.421825 | 6.2:+70121840 | MS.gene54239:CDS |
| AGAGAAGGTCACATTTGGTT+TGG | 0.422487 | 6.2:+70121845 | MS.gene54239:CDS |
| AGATCAAGAAGCAGAAAAGT+TGG | 0.429005 | 6.2:+70122207 | MS.gene54239:CDS |
| GGTAACACAGTTTCGCGCTT+AGG | 0.443356 | 6.2:-70122374 | None:intergenic |
| ACGACGGGAAACATCAAGAT+TGG | 0.443654 | 6.2:+70122098 | MS.gene54239:CDS |
| TCATATAATGAGAAGGAAGT+TGG | 0.445110 | 6.2:+70122332 | MS.gene54239:CDS |
| CGACGGGAAACATCAAGATT+GGG | 0.448003 | 6.2:+70122099 | MS.gene54239:CDS |
| CCGCAAAAGATAGGGACTCT+TGG | 0.456336 | 6.2:+70122003 | MS.gene54239:CDS |
| TTCGAGTCTTTCCAATTCAA+GGG | 0.477286 | 6.2:-70121876 | None:intergenic |
| GGAAATACACCAACAGAAGT+TGG | 0.487426 | 6.2:+70121966 | MS.gene54239:CDS |
| CTGATAACAGGATAGAATCA+AGG | 0.495121 | 6.2:+70121694 | MS.gene54239:CDS |
| TTGATGGTGAAACTAGAGAT+AGG | 0.504130 | 6.2:+70122438 | MS.gene54239:CDS |
| GATAGTCATAATGATACAAA+AGG | 0.506097 | 6.2:+70121810 | MS.gene54239:CDS |
| AGCATCTACATCAAGATTCA+GGG | 0.507214 | 6.2:+70121484 | MS.gene54239:CDS |
| AGAAGTTTCATATAATGAGA+AGG | 0.525892 | 6.2:+70122325 | MS.gene54239:CDS |
| TATTTCCATGTGACATATGT+CGG | 0.527334 | 6.2:-70121950 | None:intergenic |
| ATTTCCATGTGACATATGTC+GGG | 0.536231 | 6.2:-70121949 | None:intergenic |
| GAATCCAACCGCAAAAGATA+GGG | 0.542318 | 6.2:+70121995 | MS.gene54239:CDS |
| TCAAGAAGCAGAAAAGTTGG+AGG | 0.542723 | 6.2:+70122210 | MS.gene54239:CDS |
| CAAGGGCACCAGACATGAAA+GGG | 0.543176 | 6.2:+70121788 | MS.gene54239:CDS |
| AAAAGATATGGTGATTCTCC+TGG | 0.554755 | 6.2:+70121912 | MS.gene54239:CDS |
| GATAGAATCAAGGGATCTGA+AGG | 0.558512 | 6.2:+70121704 | MS.gene54239:CDS |
| AGAGGAATCACGGAATGGAA+TGG | 0.565210 | 6.2:+70122298 | MS.gene54239:CDS |
| TTTCAAAAGAGCACATGAAG+AGG | 0.567747 | 6.2:+70122280 | MS.gene54239:CDS |
| TTGCAGTTACTGACAAGCAA+GGG | 0.570799 | 6.2:+70121419 | MS.gene54239:intron |
| GACAGCGGGAAAACTGTTGA+TGG | 0.573038 | 6.2:+70122422 | MS.gene54239:CDS |
| AATGAGAAGGAAGTTGGTGA+TGG | 0.573345 | 6.2:+70122338 | MS.gene54239:CDS |
| TTCTCAGGCAGATCATCGAT+TGG | 0.576593 | 6.2:+70121669 | MS.gene54239:intron |
| ACAAGGGCACCAGACATGAA+AGG | 0.578127 | 6.2:+70121787 | MS.gene54239:CDS |
| TCGAGTCTTTCCAATTCAAG+GGG | 0.578918 | 6.2:-70121875 | None:intergenic |
| CGGGAATCCAAACTCCCACC+AGG | 0.579789 | 6.2:-70121930 | None:intergenic |
| AACACAAAGATGTTGACAGC+GGG | 0.580282 | 6.2:+70122408 | MS.gene54239:CDS |
| GACACACATCCTTCTCGCTA+CGG | 0.584419 | 6.2:-70121740 | None:intergenic |
| ACATCAAGATTGGGGAGACA+AGG | 0.586264 | 6.2:+70122108 | MS.gene54239:CDS |
| TTGGAAGCTCATGAGACTGT+TGG | 0.595567 | 6.2:+70122022 | MS.gene54239:CDS |
| TACACCAACAGAAGTTGGAA+AGG | 0.598152 | 6.2:+70121971 | MS.gene54239:CDS |
| TGATAACAGGATAGAATCAA+GGG | 0.604065 | 6.2:+70121695 | MS.gene54239:CDS |
| TTTGCAGTTACTGACAAGCA+AGG | 0.604565 | 6.2:+70121418 | MS.gene54239:intron |
| AGATATGGTGATTCTCCTGG+TGG | 0.609645 | 6.2:+70121915 | MS.gene54239:CDS |
| ACACAAGTTAACAATAACAT+TGG | 0.611542 | 6.2:+70122160 | MS.gene54239:CDS |
| TCGAGCAGATGACAGCAACA+AGG | 0.612879 | 6.2:+70121770 | MS.gene54239:CDS |
| GAGCACATGAAGAGGAATCA+CGG | 0.615136 | 6.2:+70122288 | MS.gene54239:CDS |
| TAGAGATATCCGTAGCGAGA+AGG | 0.617677 | 6.2:+70121731 | MS.gene54239:CDS |
| AGGTGATATTAAGACAGAGA+AGG | 0.625832 | 6.2:+70121830 | MS.gene54239:CDS |
| GATTCCCGACATATGTCACA+TGG | 0.626898 | 6.2:+70121945 | MS.gene54239:CDS |
| CTAGAGATAGGAGGAAAGAA+CGG | 0.627754 | 6.2:+70122450 | MS.gene54239:CDS |
| CATGAAGAGGAATCACGGAA+TGG | 0.631128 | 6.2:+70122293 | MS.gene54239:CDS |
| AATTGATGATGACTATGTTG+AGG | 0.633883 | 6.2:+70121251 | MS.gene54239:CDS |
| GATATGGTGATTCTCCTGGT+GGG | 0.646311 | 6.2:+70121916 | MS.gene54239:CDS |
| GACGGGAAACATCAAGATTG+GGG | 0.648089 | 6.2:+70122100 | MS.gene54239:CDS |
| CGAGCAGATGACAGCAACAA+GGG | 0.653980 | 6.2:+70121771 | MS.gene54239:CDS |
| GCATCTACATCAAGATTCAG+GGG | 0.657843 | 6.2:+70121485 | MS.gene54239:CDS |
| ATGGTGAAACTAGAGATAGG+AGG | 0.662459 | 6.2:+70122441 | MS.gene54239:CDS |
| AAACACAAAGATGTTGACAG+CGG | 0.728361 | 6.2:+70122407 | MS.gene54239:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTCCAAAAAGCA+AGG | + | chr6.2:70122253-70122272 | MS.gene54239:CDS | 20.0% |
| ! | AAAGATAGAAAAAGAAACGA+CGG | + | chr6.2:70122082-70122101 | MS.gene54239:CDS | 25.0% |
| ! | ACACAAGTTAACAATAACAT+TGG | + | chr6.2:70122160-70122179 | MS.gene54239:CDS | 25.0% |
| ! | AGAAGTTTCATATAATGAGA+AGG | + | chr6.2:70122325-70122344 | MS.gene54239:CDS | 25.0% |
| ! | GATAGTCATAATGATACAAA+AGG | + | chr6.2:70121810-70121829 | MS.gene54239:CDS | 25.0% |
| ! | TGAGAATCATTTGAAGATAA+CGG | - | chr6.2:70121655-70121674 | None:intergenic | 25.0% |
| ! | TGCATAAAATAACACAACAA+AGG | - | chr6.2:70121325-70121344 | None:intergenic | 25.0% |
| !!! | TGTTGTGTTATTTTATGCAA+TGG | + | chr6.2:70121326-70121345 | MS.gene54239:intron | 25.0% |
| !!! | TTGAAATTTTCCTTGCTTTT+TGG | - | chr6.2:70122266-70122285 | None:intergenic | 25.0% |
| AAGATAGAAAAAGAAACGAC+GGG | + | chr6.2:70122083-70122102 | MS.gene54239:CDS | 30.0% | |
| AGCAATGTTCATATGCAAAA+AGG | - | chr6.2:70121353-70121372 | None:intergenic | 30.0% | |
| GTTATCTTCAAATGATTCTC+AGG | + | chr6.2:70121654-70121673 | MS.gene54239:intron | 30.0% | |
| TATTTCCATGTGACATATGT+CGG | - | chr6.2:70121953-70121972 | None:intergenic | 30.0% | |
| TCATATAATGAGAAGGAAGT+TGG | + | chr6.2:70122332-70122351 | MS.gene54239:CDS | 30.0% | |
| TGATAACAGGATAGAATCAA+GGG | + | chr6.2:70121695-70121714 | MS.gene54239:CDS | 30.0% | |
| TTTGCATATGAACATTGCTT+TGG | + | chr6.2:70121354-70121373 | MS.gene54239:intron | 30.0% | |
| ! | AAAGACTCGAAAGATTTTAG+GGG | + | chr6.2:70121888-70121907 | MS.gene54239:CDS | 30.0% |
| ! | GAAAGACTCGAAAGATTTTA+GGG | + | chr6.2:70121887-70121906 | MS.gene54239:CDS | 30.0% |
| !! | AATTGATGATGACTATGTTG+AGG | + | chr6.2:70121251-70121270 | MS.gene54239:CDS | 30.0% |
| !! | GATTTTAGGGGAAAAAGATA+TGG | + | chr6.2:70121900-70121919 | MS.gene54239:CDS | 30.0% |
| AAAAGATATGGTGATTCTCC+TGG | + | chr6.2:70121912-70121931 | MS.gene54239:CDS | 35.0% | |
| AAACACAAAGATGTTGACAG+CGG | + | chr6.2:70122407-70122426 | MS.gene54239:CDS | 35.0% | |
| AAGCATCTACATCAAGATTC+AGG | + | chr6.2:70121483-70121502 | MS.gene54239:CDS | 35.0% | |
| AGATCAAGAAGCAGAAAAGT+TGG | + | chr6.2:70122207-70122226 | MS.gene54239:CDS | 35.0% | |
| AGCATCTACATCAAGATTCA+GGG | + | chr6.2:70121484-70121503 | MS.gene54239:CDS | 35.0% | |
| AGGTGATATTAAGACAGAGA+AGG | + | chr6.2:70121830-70121849 | MS.gene54239:CDS | 35.0% | |
| ATGCGATAAACTGAATGAAG+AGG | - | chr6.2:70121631-70121650 | None:intergenic | 35.0% | |
| ATTTCCATGTGACATATGTC+GGG | - | chr6.2:70121952-70121971 | None:intergenic | 35.0% | |
| CTGATAACAGGATAGAATCA+AGG | + | chr6.2:70121694-70121713 | MS.gene54239:CDS | 35.0% | |
| TCTTTGTGTTTCTTCTGTTC+TGG | - | chr6.2:70122398-70122417 | None:intergenic | 35.0% | |
| TTCGAGTCTTTCCAATTCAA+GGG | - | chr6.2:70121879-70121898 | None:intergenic | 35.0% | |
| TTCTGCTTCTTGATCTTCTT+TGG | - | chr6.2:70122203-70122222 | None:intergenic | 35.0% | |
| ! | GGAAAGACTCGAAAGATTTT+AGG | + | chr6.2:70121886-70121905 | MS.gene54239:CDS | 35.0% |
| ! | GTTGCTTTCATTAGTTTCGA+TGG | + | chr6.2:70121518-70121537 | MS.gene54239:intron | 35.0% |
| ! | TTTCAAAAGAGCACATGAAG+AGG | + | chr6.2:70122280-70122299 | MS.gene54239:CDS | 35.0% |
| ! | TTTCGAGTCTTTCCAATTCA+AGG | - | chr6.2:70121880-70121899 | None:intergenic | 35.0% |
| !! | TTGATGGTGAAACTAGAGAT+AGG | + | chr6.2:70122438-70122457 | MS.gene54239:CDS | 35.0% |
| AACACAAAGATGTTGACAGC+GGG | + | chr6.2:70122408-70122427 | MS.gene54239:CDS | 40.0% | |
| AAGACAGAGAAGGTCACATT+TGG | + | chr6.2:70121840-70121859 | MS.gene54239:CDS | 40.0% | |
| ACTGACAAGCAAGGGTTATT+TGG | + | chr6.2:70121427-70121446 | MS.gene54239:CDS | 40.0% | |
| AGAATCCAACCGCAAAAGAT+AGG | + | chr6.2:70121994-70122013 | MS.gene54239:CDS | 40.0% | |
| AGAGAAGGTCACATTTGGTT+TGG | + | chr6.2:70121845-70121864 | MS.gene54239:CDS | 40.0% | |
| ATGACTATCCCTTTCATGTC+TGG | - | chr6.2:70121799-70121818 | None:intergenic | 40.0% | |
| ATGGTGAAACTAGAGATAGG+AGG | + | chr6.2:70122441-70122460 | MS.gene54239:CDS | 40.0% | |
| CAGTAACTGCAAACCAAGAA+TGG | - | chr6.2:70121411-70121430 | None:intergenic | 40.0% | |
| CTAGAGATAGGAGGAAAGAA+CGG | + | chr6.2:70122450-70122469 | MS.gene54239:CDS | 40.0% | |
| GAATCCAACCGCAAAAGATA+GGG | + | chr6.2:70121995-70122014 | MS.gene54239:CDS | 40.0% | |
| GATAGAATCAAGGGATCTGA+AGG | + | chr6.2:70121704-70121723 | MS.gene54239:CDS | 40.0% | |
| GCATCTACATCAAGATTCAG+GGG | + | chr6.2:70121485-70121504 | MS.gene54239:CDS | 40.0% | |
| GGAAATACACCAACAGAAGT+TGG | + | chr6.2:70121966-70121985 | MS.gene54239:CDS | 40.0% | |
| TACACCAACAGAAGTTGGAA+AGG | + | chr6.2:70121971-70121990 | MS.gene54239:CDS | 40.0% | |
| TCAAGAAGCAGAAAAGTTGG+AGG | + | chr6.2:70122210-70122229 | MS.gene54239:CDS | 40.0% | |
| TCGAGTCTTTCCAATTCAAG+GGG | - | chr6.2:70121878-70121897 | None:intergenic | 40.0% | |
| TTCTCCTTTCCAACTTCTGT+TGG | - | chr6.2:70121978-70121997 | None:intergenic | 40.0% | |
| TTGCAGTTACTGACAAGCAA+GGG | + | chr6.2:70121419-70121438 | MS.gene54239:intron | 40.0% | |
| TTTGCAGTTACTGACAAGCA+AGG | + | chr6.2:70121418-70121437 | MS.gene54239:intron | 40.0% | |
| ! | CATCGATTGGAACTGATAAC+AGG | + | chr6.2:70121682-70121701 | MS.gene54239:CDS | 40.0% |
| !! | AATGAGAAGGAAGTTGGTGA+TGG | + | chr6.2:70122338-70122357 | MS.gene54239:CDS | 40.0% |
| ACATCAAGATTGGGGAGACA+AGG | + | chr6.2:70122108-70122127 | MS.gene54239:CDS | 45.0% | |
| ACGACGGGAAACATCAAGAT+TGG | + | chr6.2:70122098-70122117 | MS.gene54239:CDS | 45.0% | |
| AGAGGAATCACGGAATGGAA+TGG | + | chr6.2:70122298-70122317 | MS.gene54239:CDS | 45.0% | |
| AGATATGGTGATTCTCCTGG+TGG | + | chr6.2:70121915-70121934 | MS.gene54239:CDS | 45.0% | |
| CATGAAGAGGAATCACGGAA+TGG | + | chr6.2:70122293-70122312 | MS.gene54239:CDS | 45.0% | |
| CCAAGAATGGAGACTATGTC+AGG | - | chr6.2:70121398-70121417 | None:intergenic | 45.0% | |
| CCTGACATAGTCTCCATTCT+TGG | + | chr6.2:70121395-70121414 | MS.gene54239:intron | 45.0% | |
| CGACGGGAAACATCAAGATT+GGG | + | chr6.2:70122099-70122118 | MS.gene54239:CDS | 45.0% | |
| GACGGGAAACATCAAGATTG+GGG | + | chr6.2:70122100-70122119 | MS.gene54239:CDS | 45.0% | |
| GAGCACATGAAGAGGAATCA+CGG | + | chr6.2:70122288-70122307 | MS.gene54239:CDS | 45.0% | |
| GATATGGTGATTCTCCTGGT+GGG | + | chr6.2:70121916-70121935 | MS.gene54239:CDS | 45.0% | |
| GATTCCCGACATATGTCACA+TGG | + | chr6.2:70121945-70121964 | MS.gene54239:CDS | 45.0% | |
| GCGAAGACATTTCGTGTTGA+AGG | + | chr6.2:70121583-70121602 | MS.gene54239:intron | 45.0% | |
| GTGACATAGGTCAGGATTCT+CGG | + | chr6.2:70121557-70121576 | MS.gene54239:intron | 45.0% | |
| TAGAGATATCCGTAGCGAGA+AGG | + | chr6.2:70121731-70121750 | MS.gene54239:CDS | 45.0% | |
| TGACATAGGTCAGGATTCTC+GGG | + | chr6.2:70121558-70121577 | MS.gene54239:intron | 45.0% | |
| TTCTCAGGCAGATCATCGAT+TGG | + | chr6.2:70121669-70121688 | MS.gene54239:intron | 45.0% | |
| TTGGAAGCTCATGAGACTGT+TGG | + | chr6.2:70122022-70122041 | MS.gene54239:CDS | 45.0% | |
| ! | CCAAGAGTCCCTATCTTTTG+CGG | - | chr6.2:70122006-70122025 | None:intergenic | 45.0% |
| ACCACGTTTCCTCGTGACAT+AGG | + | chr6.2:70121544-70121563 | MS.gene54239:intron | 50.0% | |
| ACCTATGTCACGAGGAAACG+TGG | - | chr6.2:70121548-70121567 | None:intergenic | 50.0% | |
| CCGCAAAAGATAGGGACTCT+TGG | + | chr6.2:70122003-70122022 | MS.gene54239:CDS | 50.0% | |
| CGAGCAGATGACAGCAACAA+GGG | + | chr6.2:70121771-70121790 | MS.gene54239:CDS | 50.0% | |
| GAATCCTGACCTATGTCACG+AGG | - | chr6.2:70121556-70121575 | None:intergenic | 50.0% | |
| GACACACATCCTTCTCGCTA+CGG | - | chr6.2:70121743-70121762 | None:intergenic | 50.0% | |
| GACAGCGGGAAAACTGTTGA+TGG | + | chr6.2:70122422-70122441 | MS.gene54239:CDS | 50.0% | |
| GGTAACACAGTTTCGCGCTT+AGG | - | chr6.2:70122377-70122396 | None:intergenic | 50.0% | |
| GTTTCCTCGTGACATAGGTC+AGG | + | chr6.2:70121549-70121568 | MS.gene54239:intron | 50.0% | |
| TATGTCACGAGGAAACGTGG+TGG | - | chr6.2:70121545-70121564 | None:intergenic | 50.0% | |
| TCGAGCAGATGACAGCAACA+AGG | + | chr6.2:70121770-70121789 | MS.gene54239:CDS | 50.0% | |
| TCGTGTTGAAGGTCGTGATG+CGG | + | chr6.2:70121594-70121613 | MS.gene54239:intron | 50.0% | |
| TGATTCTCCTGGTGGGAGTT+TGG | + | chr6.2:70121923-70121942 | MS.gene54239:CDS | 50.0% | |
| TGGTTAGCAGCCCCTTGAAT+TGG | + | chr6.2:70121865-70121884 | MS.gene54239:CDS | 50.0% | |
| ! | GAGTCCCTATCTTTTGCGGT+TGG | - | chr6.2:70122002-70122021 | None:intergenic | 50.0% |
| !! | ACAAGGGCACCAGACATGAA+AGG | + | chr6.2:70121787-70121806 | MS.gene54239:CDS | 50.0% |
| !! | CAAGGGCACCAGACATGAAA+GGG | + | chr6.2:70121788-70121807 | MS.gene54239:CDS | 50.0% |
| CATAGGTCAGGATTCTCGGG+TGG | + | chr6.2:70121561-70121580 | MS.gene54239:intron | 55.0% | |
| CGGGAATCCAAACTCCCACC+AGG | - | chr6.2:70121933-70121952 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 70121243 | 70122484 | 70121243 | ID=MS.gene54239 |
| chr6.2 | mRNA | 70121243 | 70122484 | 70121243 | ID=MS.gene54239.t1;Parent=MS.gene54239 |
| chr6.2 | exon | 70121243 | 70121326 | 70121243 | ID=MS.gene54239.t1.exon1;Parent=MS.gene54239.t1 |
| chr6.2 | CDS | 70121243 | 70121326 | 70121243 | ID=cds.MS.gene54239.t1;Parent=MS.gene54239.t1 |
| chr6.2 | exon | 70121425 | 70121506 | 70121425 | ID=MS.gene54239.t1.exon2;Parent=MS.gene54239.t1 |
| chr6.2 | CDS | 70121425 | 70121506 | 70121425 | ID=cds.MS.gene54239.t1;Parent=MS.gene54239.t1 |
| chr6.2 | exon | 70121676 | 70122484 | 70121676 | ID=MS.gene54239.t1.exon3;Parent=MS.gene54239.t1 |
| chr6.2 | CDS | 70121676 | 70122484 | 70121676 | ID=cds.MS.gene54239.t1;Parent=MS.gene54239.t1 |
| Gene Sequence |
| Protein sequence |
