AlfalfaGEDB | MS.gene058647

M. sativa cultivar XinJiangDaYe / MS.gene058647

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058647.t1	GAU48597.1	98	51	1	0	1	51	229	279	1.50E-20	107.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058647.t1	Q6EVK6	82.4	51	9	0	1	51	1143	1193	1.2e-18	92.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058647.t1	A0A2Z6PQS2	98.0	51	1	0	1	51	229	279	1.1e-20	107.8

TFs/TRs:

Gene ID	Type	Classification
MS.gene058647.t1	TR	SNF2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene058647	0.835198	1.93E-56	-1.69E-46
MS.gene050551	MS.gene058647	0.804852	1.77E-49	-1.69E-46
MS.gene051198	MS.gene058647	0.800837	1.20E-48	-1.69E-46
MS.gene051800	MS.gene058647	0.812237	4.69E-51	-1.69E-46
MS.gene052307	MS.gene058647	0.810648	1.04E-50	-1.69E-46
MS.gene052463	MS.gene058647	0.8063	8.79E-50	-1.69E-46
MS.gene052516	MS.gene058647	0.801175	1.02E-48	-1.69E-46
MS.gene052609	MS.gene058647	0.834354	3.15E-56	-1.69E-46
MS.gene054824	MS.gene058647	0.812616	3.88E-51	-1.69E-46
MS.gene055465	MS.gene058647	0.814071	1.86E-51	-1.69E-46
MS.gene055467	MS.gene058647	0.805888	1.07E-49	-1.69E-46
MS.gene055469	MS.gene058647	0.818186	2.24E-52	-1.69E-46
MS.gene055926	MS.gene058647	0.825131	5.54E-54	-1.69E-46
MS.gene056308	MS.gene058647	0.822564	2.21E-53	-1.69E-46
MS.gene056507	MS.gene058647	0.829119	6.15E-55	-1.69E-46
MS.gene057446	MS.gene058647	0.808236	3.42E-50	-1.69E-46
MS.gene057869	MS.gene058647	0.808503	3.00E-50	-1.69E-46
MS.gene057915	MS.gene058647	0.813184	2.91E-51	-1.69E-46
MS.gene058010	MS.gene058647	0.810723	1.00E-50	-1.69E-46
MS.gene058647	MS.gene058919	0.813357	2.67E-51	-1.69E-46
MS.gene058647	MS.gene059439	0.835916	1.27E-56	-1.69E-46
MS.gene058647	MS.gene060380	0.805139	1.54E-49	-1.69E-46
MS.gene058647	MS.gene06052	0.813672	2.27E-51	-1.69E-46
MS.gene058647	MS.gene061006	0.808869	2.51E-50	-1.69E-46
MS.gene058647	MS.gene06133	0.836082	1.15E-56	-1.69E-46
MS.gene058647	MS.gene063772	0.812809	3.52E-51	-1.69E-46
MS.gene058647	MS.gene065568	0.827052	1.94E-54	-1.69E-46
MS.gene058647	MS.gene065593	0.835185	1.94E-56	-1.69E-46
MS.gene058647	MS.gene065934	0.818112	2.32E-52	-1.69E-46
MS.gene058647	MS.gene06740	0.80195	7.07E-49	-1.69E-46
MS.gene058647	MS.gene067450	0.809424	1.91E-50	-1.69E-46
MS.gene058647	MS.gene068327	0.823251	1.53E-53	-1.69E-46
MS.gene058647	MS.gene068388	0.807087	6.00E-50	-1.69E-46
MS.gene058647	MS.gene069021	0.811071	8.41E-51	-1.69E-46
MS.gene058647	MS.gene069410	0.815621	8.42E-52	-1.69E-46
MS.gene058647	MS.gene06958	0.804186	2.44E-49	-1.69E-46
MS.gene058647	MS.gene069690	0.816993	4.15E-52	-1.69E-46
MS.gene058647	MS.gene069945	0.801834	7.47E-49	-1.69E-46
MS.gene058647	MS.gene071699	0.819557	1.09E-52	-1.69E-46
MS.gene058647	MS.gene072116	0.811769	5.93E-51	-1.69E-46
MS.gene058647	MS.gene072632	0.807757	4.32E-50	-1.69E-46
MS.gene058647	MS.gene073132	0.805013	1.64E-49	-1.69E-46
MS.gene058647	MS.gene073387	0.809273	2.05E-50	-1.69E-46
MS.gene058647	MS.gene073390	0.835842	1.33E-56	-1.69E-46
MS.gene058647	MS.gene074604	0.801459	8.92E-49	-1.69E-46
MS.gene058647	MS.gene07510	0.801604	8.32E-49	-1.69E-46
MS.gene058647	MS.gene08577	0.841563	4.41E-58	-1.69E-46
MS.gene058647	MS.gene20718	0.812651	3.81E-51	-1.69E-46
MS.gene058647	MS.gene21826	0.812788	3.55E-51	-1.69E-46
MS.gene058647	MS.gene22419	0.800852	1.19E-48	-1.69E-46
MS.gene058647	MS.gene23030	0.805537	1.27E-49	-1.69E-46
MS.gene058647	MS.gene24203	0.809495	1.84E-50	-1.69E-46
MS.gene058647	MS.gene24229	0.812832	3.48E-51	-1.69E-46
MS.gene058647	MS.gene24268	0.820559	6.44E-53	-1.69E-46
MS.gene058647	MS.gene24633	0.815095	1.10E-51	-1.69E-46
MS.gene058647	MS.gene24903	0.805018	1.63E-49	-1.69E-46
MS.gene058647	MS.gene25109	0.800502	1.40E-48	-1.69E-46
MS.gene058647	MS.gene25468	0.806689	7.28E-50	-1.69E-46
MS.gene058647	MS.gene25810	0.804271	2.34E-49	-1.69E-46
MS.gene058647	MS.gene25816	0.801035	1.09E-48	-1.69E-46
MS.gene058647	MS.gene26396	0.802948	4.40E-49	-1.69E-46
MS.gene058647	MS.gene26972	0.812127	4.96E-51	-1.69E-46
MS.gene058647	MS.gene27006	0.829455	5.10E-55	-1.69E-46
MS.gene058647	MS.gene27026	0.815871	7.41E-52	-1.69E-46
MS.gene058647	MS.gene27269	0.822185	2.71E-53	-1.69E-46
MS.gene058647	MS.gene27302	0.817049	4.03E-52	-1.69E-46
MS.gene058647	MS.gene27401	0.825041	5.82E-54	-1.69E-46
MS.gene058647	MS.gene27697	0.824593	7.42E-54	-1.69E-46
MS.gene058647	MS.gene27700	0.809523	1.81E-50	-1.69E-46
MS.gene058647	MS.gene28198	0.808062	3.72E-50	-1.69E-46
MS.gene058647	MS.gene28536	0.825212	5.30E-54	-1.69E-46
MS.gene058647	MS.gene29022	0.801328	9.48E-49	-1.69E-46
MS.gene058647	MS.gene29233	0.814195	1.74E-51	-1.69E-46
MS.gene058647	MS.gene29361	0.83665	8.26E-57	-1.69E-46
MS.gene058647	MS.gene30419	0.804753	1.86E-49	-1.69E-46
MS.gene058647	MS.gene31668	0.816943	4.26E-52	-1.69E-46
MS.gene058647	MS.gene32081	0.806349	8.59E-50	-1.69E-46
MS.gene058647	MS.gene33135	0.807854	4.12E-50	-1.69E-46
MS.gene058647	MS.gene34065	0.811877	5.62E-51	-1.69E-46
MS.gene058647	MS.gene34453	0.821815	3.30E-53	-1.69E-46
MS.gene058647	MS.gene34485	0.816263	6.05E-52	-1.69E-46
MS.gene058647	MS.gene34691	0.805377	1.37E-49	-1.69E-46
MS.gene058647	MS.gene34937	0.819908	9.07E-53	-1.69E-46
MS.gene058647	MS.gene35323	0.80081	1.21E-48	-1.69E-46
MS.gene058647	MS.gene35631	0.819243	1.29E-52	-1.69E-46
MS.gene058647	MS.gene35808	0.822751	2.00E-53	-1.69E-46
MS.gene058647	MS.gene35822	0.80529	1.43E-49	-1.69E-46
MS.gene058647	MS.gene35823	0.804037	2.62E-49	-1.69E-46
MS.gene058647	MS.gene35864	0.802741	4.86E-49	-1.69E-46
MS.gene058647	MS.gene36289	0.808757	2.65E-50	-1.69E-46
MS.gene058647	MS.gene37011	0.815049	1.13E-51	-1.69E-46
MS.gene058647	MS.gene37876	0.817285	3.57E-52	-1.69E-46
MS.gene058647	MS.gene37917	0.809157	2.17E-50	-1.69E-46
MS.gene058647	MS.gene38378	0.847448	1.15E-59	-1.69E-46
MS.gene058647	MS.gene39046	0.806618	7.54E-50	-1.69E-46
MS.gene058647	MS.gene39529	0.809329	2.00E-50	-1.69E-46
MS.gene058647	MS.gene40068	0.8073	5.41E-50	-1.69E-46
MS.gene058647	MS.gene40157	0.803095	4.11E-49	-1.69E-46
MS.gene058647	MS.gene41427	0.815229	1.03E-51	-1.69E-46
MS.gene058647	MS.gene43202	0.825155	5.47E-54	-1.69E-46
MS.gene058647	MS.gene43973	0.813407	2.60E-51	-1.69E-46
MS.gene058647	MS.gene44001	0.804901	1.73E-49	-1.69E-46
MS.gene058647	MS.gene44326	0.812852	3.44E-51	-1.69E-46
MS.gene058647	MS.gene44427	0.801446	8.97E-49	-1.69E-46
MS.gene058647	MS.gene44764	0.809967	1.46E-50	-1.69E-46
MS.gene058647	MS.gene44795	0.818515	1.88E-52	-1.69E-46
MS.gene058647	MS.gene44967	0.842258	2.89E-58	-1.69E-46
MS.gene058647	MS.gene45613	0.810331	1.22E-50	-1.69E-46
MS.gene058647	MS.gene45624	0.810996	8.73E-51	-1.69E-46
MS.gene058647	MS.gene47554	0.801955	7.05E-49	-1.69E-46
MS.gene058647	MS.gene47581	0.815794	7.70E-52	-1.69E-46
MS.gene058647	MS.gene47601	0.819763	9.79E-53	-1.69E-46
MS.gene058647	MS.gene47603	0.802728	4.89E-49	-1.69E-46
MS.gene058647	MS.gene47747	0.842138	3.11E-58	-1.69E-46
MS.gene058647	MS.gene49423	0.802252	6.13E-49	-1.69E-46
MS.gene058647	MS.gene49467	0.811044	8.52E-51	-1.69E-46
MS.gene058647	MS.gene49883	0.82858	8.31E-55	-1.69E-46
MS.gene058647	MS.gene50163	0.82324	1.54E-53	-1.69E-46
MS.gene058647	MS.gene50869	0.819953	8.86E-53	-1.69E-46
MS.gene058647	MS.gene51029	0.801215	1.00E-48	-1.69E-46
MS.gene058647	MS.gene51789	0.828518	8.60E-55	-1.69E-46
MS.gene058647	MS.gene51818	0.809215	2.11E-50	-1.69E-46
MS.gene058647	MS.gene51985	0.80698	6.32E-50	-1.69E-46
MS.gene058647	MS.gene52437	0.834043	3.76E-56	-1.69E-46
MS.gene058647	MS.gene52438	0.820242	7.61E-53	-1.69E-46
MS.gene058647	MS.gene52956	0.809375	1.95E-50	-1.69E-46
MS.gene058647	MS.gene53321	0.801091	1.06E-48	-1.69E-46
MS.gene058647	MS.gene54158	0.80445	2.15E-49	-1.69E-46
MS.gene058647	MS.gene54239	0.805155	1.53E-49	-1.69E-46
MS.gene058647	MS.gene54280	0.825838	3.77E-54	-1.69E-46
MS.gene058647	MS.gene54967	0.805503	1.29E-49	-1.69E-46
MS.gene058647	MS.gene56196	0.806048	9.94E-50	-1.69E-46
MS.gene058647	MS.gene56748	0.800917	1.15E-48	-1.69E-46
MS.gene058647	MS.gene58134	0.807183	5.73E-50	-1.69E-46
MS.gene058647	MS.gene58193	0.804149	2.48E-49	-1.69E-46
MS.gene058647	MS.gene58617	0.837409	5.29E-57	-1.69E-46
MS.gene058647	MS.gene59366	0.833827	4.26E-56	-1.69E-46
MS.gene058647	MS.gene60144	0.826822	2.20E-54	-1.69E-46
MS.gene058647	MS.gene60163	0.817978	2.49E-52	-1.69E-46
MS.gene058647	MS.gene60304	0.801392	9.20E-49	-1.69E-46
MS.gene058647	MS.gene61202	0.820726	5.89E-53	-1.69E-46
MS.gene058647	MS.gene62806	0.808068	3.71E-50	-1.69E-46
MS.gene058647	MS.gene63961	0.827534	1.48E-54	-1.69E-46
MS.gene058647	MS.gene64671	0.817374	3.41E-52	-1.69E-46
MS.gene058647	MS.gene65172	0.815352	9.66E-52	-1.69E-46
MS.gene058647	MS.gene65300	0.818416	1.98E-52	-1.69E-46
MS.gene058647	MS.gene67553	0.813409	2.60E-51	-1.69E-46
MS.gene058647	MS.gene70730	0.805242	1.47E-49	-1.69E-46
MS.gene058647	MS.gene70825	0.807927	3.98E-50	-1.69E-46
MS.gene058647	MS.gene72986	0.805232	1.47E-49	-1.69E-46
MS.gene058647	MS.gene73327	0.800785	1.22E-48	-1.69E-46
MS.gene058647	MS.gene73332	0.825508	4.51E-54	-1.69E-46
MS.gene058647	MS.gene75866	0.80595	1.04E-49	-1.69E-46
MS.gene058647	MS.gene76228	0.801129	1.04E-48	-1.69E-46
MS.gene058647	MS.gene76317	0.803679	3.11E-49	-1.69E-46
MS.gene058647	MS.gene76506	0.800348	1.50E-48	-1.69E-46
MS.gene058647	MS.gene80233	0.801215	1.00E-48	-1.69E-46
MS.gene058647	MS.gene80574	0.805857	1.09E-49	-1.69E-46
MS.gene058647	MS.gene80732	0.815826	7.58E-52	-1.69E-46
MS.gene058647	MS.gene81370	0.802579	5.25E-49	-1.69E-46
MS.gene058647	MS.gene82806	0.825621	4.24E-54	-1.69E-46
MS.gene058647	MS.gene83055	0.81678	4.63E-52	-1.69E-46
MS.gene058647	MS.gene83056	0.820591	6.33E-53	-1.69E-46
MS.gene058647	MS.gene83689	0.803402	3.55E-49	-1.69E-46
MS.gene058647	MS.gene84454	0.80116	1.03E-48	-1.69E-46
MS.gene058647	MS.gene84498	0.80576	1.14E-49	-1.69E-46
MS.gene058647	MS.gene84840	0.849724	2.69E-60	-1.69E-46
MS.gene058647	MS.gene84842	0.816573	5.16E-52	-1.69E-46
MS.gene058647	MS.gene85122	0.81354	2.43E-51	-1.69E-46
MS.gene058647	MS.gene86140	0.837701	4.45E-57	-1.69E-46
MS.gene058647	MS.gene86267	0.831408	1.70E-55	-1.69E-46
MS.gene058647	MS.gene86973	0.809064	2.28E-50	-1.69E-46
MS.gene058647	MS.gene87358	0.824068	9.86E-54	-1.69E-46
MS.gene058647	MS.gene87622	0.808719	2.70E-50	-1.69E-46
MS.gene058647	MS.gene88254	0.817018	4.10E-52	-1.69E-46
MS.gene058647	MS.gene88649	0.845524	3.85E-59	-1.69E-46
MS.gene058647	MS.gene89104	0.813506	2.47E-51	-1.69E-46
MS.gene058647	MS.gene89368	0.819408	1.18E-52	-1.69E-46
MS.gene058647	MS.gene89369	0.802771	4.79E-49	-1.69E-46
MS.gene058647	MS.gene90431	0.847694	9.83E-60	-1.69E-46
MS.gene058647	MS.gene90727	0.815677	8.18E-52	-1.69E-46
MS.gene058647	MS.gene90763	0.800369	1.49E-48	-1.69E-46
MS.gene058647	MS.gene91208	0.830499	2.84E-55	-1.69E-46
MS.gene058647	MS.gene92340	0.803016	4.26E-49	-1.69E-46
MS.gene058647	MS.gene95339	0.800425	1.45E-48	-1.69E-46
MS.gene058647	MS.gene95562	0.813842	2.09E-51	-1.69E-46
MS.gene058647	MS.gene95698	0.814755	1.31E-51	-1.69E-46
MS.gene058647	MS.gene95712	0.804848	1.77E-49	-1.69E-46
MS.gene058647	MS.gene96210	0.824501	7.80E-54	-1.69E-46
MS.gene058647	MS.gene96353	0.811427	7.04E-51	-1.69E-46
MS.gene058647	MS.gene97459	0.804103	2.54E-49	-1.69E-46
MS.gene058647	MS.gene98089	0.80373	3.03E-49	-1.69E-46
MS.gene058647	MS.gene98990	0.816834	4.51E-52	-1.69E-46
MS.gene058647	MS.gene99986	0.80391	2.78E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058647.t1	MTR_7g078090	98.039	51	1	1	51	1156	1206	1.38e-29	108
MS.gene058647.t1	MTR_8g030550	92.157	51	4	1	51	1148	1198	2.65e-19	79.0
MS.gene058647.t1	MTR_8g030550	92.157	51	4	1	51	1148	1198	2.87e-19	79.0
MS.gene058647.t1	MTR_8g030550	92.157	51	4	1	51	1148	1198	3.07e-19	79.0

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1143	1193	5.17e-17	72.4
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1143	1193	5.17e-17	72.4
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1143	1193	5.17e-17	72.4
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1142	1192	5.65e-17	72.4
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1142	1192	5.65e-17	72.4
MS.gene058647.t1	AT2G46020	82.353	51	9	1	51	1142	1192	5.65e-17	72.4

Find 9 sgRNAs with CRISPR-Local

Find 11 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCCAATCATCCTCTGCATTT+TGG	0.176846	7.2:+27682465	None:intergenic
ATAAGAAAGCCTTCAATGAT+TGG	0.353444	7.2:-27682520	MS.gene058647:CDS
ACCAAAATGCAGAGGATGAT+TGG	0.374727	7.2:-27682466	MS.gene058647:CDS
TTCTCTGCAGAATGATTTGA+AGG	0.385650	7.2:-27682588	None:intergenic
AGAATGATTTGAAGGAGCTT+TGG	0.417349	7.2:-27682580	MS.gene058647:CDS
GTTCTCGAAACCATTTCAAA+AGG	0.474139	7.2:-27682498	MS.gene058647:CDS
TTTCGAGAACCAATCATTGA+AGG	0.499720	7.2:+27682511	None:intergenic
TTTAAATCTACTTCTTCCTG+AGG	0.560138	7.2:-27682552	MS.gene058647:CDS
AGATCCCAACCAAAATGCAG+AGG	0.665916	7.2:-27682474	MS.gene058647:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATAAGAAAGCCTTCAATGAT+TGG	-	chr7.2:27682506-27682525	MS.gene058647:CDS	30.0%
	TTCTTATTGTCAAAAACCTC+AGG	+	chr7.2:27682493-27682512	None:intergenic	30.0%
	TTTAAATCTACTTCTTCCTG+AGG	-	chr7.2:27682474-27682493	MS.gene058647:CDS	30.0%
	GTTCTCGAAACCATTTCAAA+AGG	-	chr7.2:27682528-27682547	MS.gene058647:CDS	35.0%
	TTTCGAGAACCAATCATTGA+AGG	+	chr7.2:27682518-27682537	None:intergenic	35.0%
!!	TTGGGATCTTCCTTTTGAAA+TGG	+	chr7.2:27682541-27682560	None:intergenic	35.0%
	ACCAAAATGCAGAGGATGAT+TGG	-	chr7.2:27682560-27682579	MS.gene058647:CDS	40.0%
!!	ATCATCCTCTGCATTTTGGT+TGG	+	chr7.2:27682560-27682579	None:intergenic	40.0%
!!!	TCATCCTCTGCATTTTGGTT+GGG	+	chr7.2:27682559-27682578	None:intergenic	40.0%
	AGATCCCAACCAAAATGCAG+AGG	-	chr7.2:27682552-27682571	MS.gene058647:CDS	45.0%
!	GCCAATCATCCTCTGCATTT+TGG	+	chr7.2:27682564-27682583	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	27682448	27682600	27682448	ID=MS.gene058647
chr7.2	mRNA	27682448	27682600	27682448	ID=MS.gene058647.t1;Parent=MS.gene058647
chr7.2	exon	27682448	27682600	27682448	ID=MS.gene058647.t1.exon1;Parent=MS.gene058647.t1
chr7.2	CDS	27682448	27682600	27682448	ID=cds.MS.gene058647.t1;Parent=MS.gene058647.t1

Gene Sequence	>MS.gene058647 AATGATTTGAAGGAGCTTTGGTCACTTTTAAATCTACTTCTTCCTGAGGTTTTTGACAATAAGAAAGCCTTCAATGATTGGTTCTCGAAACCATTTCAAAAGGAAGATCCCAACCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAA
Protein sequence	>MS.gene058647.t1 NDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEDPNQNAEDDWLETEKK