Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54461.t1 | XP_013447443.1 | 92.4 | 301 | 23 | 0 | 1 | 301 | 1 | 301 | 1.30E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54461.t1 | Q9M886 | 56.1 | 285 | 81 | 4 | 1 | 281 | 1 | 245 | 4.3e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54461.t1 | A0A072TVI9 | 92.4 | 301 | 23 | 0 | 1 | 301 | 1 | 301 | 9.3e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54461.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene54461 | 0.80811 | 3.64E-50 | -1.69E-46 |
| MS.gene050710 | MS.gene54461 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene051552 | MS.gene54461 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene54461 | -0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene055159 | MS.gene54461 | 0.822741 | 2.01E-53 | -1.69E-46 |
| MS.gene055539 | MS.gene54461 | -0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene057356 | MS.gene54461 | 0.801922 | 7.16E-49 | -1.69E-46 |
| MS.gene059717 | MS.gene54461 | -0.811061 | 8.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54461.t1 | MTR_7g007010 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 597 |
| MS.gene54461.t1 | MTR_6g018270 | 60.000 | 310 | 83 | 9 | 1 | 301 | 1 | 278 | 1.36e-112 | 327 |
| MS.gene54461.t1 | MTR_6g453130 | 44.395 | 223 | 114 | 4 | 1 | 213 | 1 | 223 | 9.80e-58 | 185 |
| MS.gene54461.t1 | MTR_4g095600 | 50.888 | 169 | 67 | 2 | 3 | 159 | 1 | 165 | 1.85e-54 | 177 |
| MS.gene54461.t1 | MTR_1g110840 | 45.673 | 208 | 99 | 5 | 1 | 196 | 1 | 206 | 2.71e-53 | 174 |
| MS.gene54461.t1 | MTR_6g054150 | 51.149 | 174 | 68 | 6 | 1 | 164 | 1 | 167 | 1.40e-52 | 172 |
| MS.gene54461.t1 | MTR_5g015880 | 64.545 | 110 | 39 | 0 | 3 | 112 | 1 | 110 | 6.08e-52 | 171 |
| MS.gene54461.t1 | MTR_6g054080 | 50.575 | 174 | 69 | 6 | 1 | 164 | 1 | 167 | 1.84e-51 | 169 |
| MS.gene54461.t1 | MTR_1g106420 | 60.577 | 104 | 41 | 0 | 3 | 106 | 1 | 104 | 7.67e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54461.t1 | AT3G02550 | 60.351 | 285 | 69 | 4 | 1 | 281 | 1 | 245 | 2.15e-113 | 328 |
| MS.gene54461.t1 | AT1G67100 | 82.270 | 141 | 22 | 2 | 1 | 138 | 1 | 141 | 9.89e-83 | 249 |
| MS.gene54461.t1 | AT1G68510 | 62.941 | 170 | 53 | 2 | 1 | 160 | 1 | 170 | 3.24e-74 | 228 |
| MS.gene54461.t1 | AT3G49940 | 70.000 | 110 | 33 | 0 | 3 | 112 | 1 | 110 | 2.92e-55 | 179 |
| MS.gene54461.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 3.98e-54 | 177 |
| MS.gene54461.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 3.98e-54 | 177 |
| MS.gene54461.t1 | AT4G37540 | 66.667 | 111 | 37 | 0 | 3 | 113 | 1 | 111 | 3.42e-53 | 174 |
Find 98 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCGACTGAACCGTAAAT+TGG | 0.188374 | 7.4:-92351153 | None:intergenic |
| GTGGCATTAGCTTGTGATTC+AGG | 0.204656 | 7.4:-92350730 | None:intergenic |
| GGCTCATGGAATGTGGAGTT+GGG | 0.290152 | 7.4:+92351780 | MS.gene54461:CDS |
| ACCAGCACGACCGTAGAATT+TGG | 0.324902 | 7.4:-92350764 | None:intergenic |
| TGGAGAGGAAAAGGTTGGTT+TGG | 0.330903 | 7.4:+92351668 | MS.gene54461:CDS |
| GTTGGTTTGGAGCTGACTCT+TGG | 0.364251 | 7.4:+92351681 | MS.gene54461:CDS |
| CGAATAGTGAACCCAATTTA+CGG | 0.368957 | 7.4:+92351141 | MS.gene54461:CDS |
| CTCTCACTGGTTCGGTCAAC+CGG | 0.379598 | 7.4:-92351645 | None:intergenic |
| GCAGCTGCTTCCGAAGTTAT+CGG | 0.380995 | 7.4:-92351246 | None:intergenic |
| TTGACATAGCTGCCAACTTC+CGG | 0.388062 | 7.4:-92351184 | None:intergenic |
| CTCTTCTTGTATCTTCGGCT+TGG | 0.390746 | 7.4:-92351397 | None:intergenic |
| CCTCTCCACTCTCACTGGTT+CGG | 0.397640 | 7.4:-92351653 | None:intergenic |
| GGAGTTGGGGCTTCAATATC+CGG | 0.399627 | 7.4:+92351794 | MS.gene54461:CDS |
| GAAAAGAAGGGTTGTATTGA+AGG | 0.400262 | 7.4:+92351746 | MS.gene54461:CDS |
| TGGCTCATGGAATGTGGAGT+TGG | 0.402516 | 7.4:+92351779 | MS.gene54461:CDS |
| TTGGTTTGGAGCTGACTCTT+GGG | 0.409856 | 7.4:+92351682 | MS.gene54461:CDS |
| GATCTTATTTAGAGATGAAC+CGG | 0.409879 | 7.4:+92351602 | MS.gene54461:CDS |
| CAGTGAGAGTGGAGAGGAAA+AGG | 0.413870 | 7.4:+92351659 | MS.gene54461:CDS |
| GTCTGAGGCGGTTGCGTTGG+TGG | 0.415235 | 7.4:+92351542 | MS.gene54461:CDS |
| GCTGACTCTTGGGCTTGAAC+CGG | 0.417029 | 7.4:+92351692 | MS.gene54461:CDS |
| CGGTTCATCACCTCCTCAAC+CGG | 0.421068 | 7.4:-92351486 | None:intergenic |
| CGACACATGACGGATGTCAT+AGG | 0.427071 | 7.4:-92351295 | None:intergenic |
| ACCGGTCGGCTCAGTTGAAC+CGG | 0.430775 | 7.4:-92351454 | None:intergenic |
| AACCGACTGAACCGTAAATT+GGG | 0.433750 | 7.4:-92351152 | None:intergenic |
| ACGGTTCAGTCGGTTTATTA+TGG | 0.442488 | 7.4:+92351160 | MS.gene54461:CDS |
| GCCGACCGGTTCGGTTGAAC+CGG | 0.442999 | 7.4:+92351467 | MS.gene54461:CDS |
| CGAACCTGGACGAAGATGTT+CGG | 0.443982 | 7.4:-92350812 | None:intergenic |
| TGGCATTAGCTTGTGATTCA+GGG | 0.445704 | 7.4:-92350729 | None:intergenic |
| GAACCTGGACGAAGATGTTC+GGG | 0.446611 | 7.4:-92350811 | None:intergenic |
| GTATTGAAGGATTGTGGTGT+TGG | 0.451012 | 7.4:+92351759 | MS.gene54461:CDS |
| GAGAGTGGAGAGGAAAAGGT+TGG | 0.454972 | 7.4:+92351663 | MS.gene54461:CDS |
| CTTCGGAAGCAGCTGCTAAC+GGG | 0.456571 | 7.4:+92351253 | MS.gene54461:CDS |
| GCCAAATTCTACGGTCGTGC+TGG | 0.457716 | 7.4:+92350763 | MS.gene54461:CDS |
| CCAGTCTGAGGCGGTTGCGT+TGG | 0.463877 | 7.4:+92351539 | MS.gene54461:CDS |
| GAAGCAGCTGCTAACGGGAG+GGG | 0.464479 | 7.4:+92351258 | MS.gene54461:CDS |
| ACATGATAAACACGTGAAAC+CGG | 0.466817 | 7.4:-92351711 | None:intergenic |
| GTGTTTCTCGCCAAATTCTA+CGG | 0.467341 | 7.4:+92350754 | MS.gene54461:CDS |
| TTCAACTGAGCCGACCGGTT+CGG | 0.472535 | 7.4:+92351458 | MS.gene54461:CDS |
| CTCAACCGGTTCAACCGAAC+CGG | 0.476475 | 7.4:-92351472 | None:intergenic |
| GAGAACAAGGGATTTGAATC+CGG | 0.487023 | 7.4:+92351435 | MS.gene54461:CDS |
| GAGGCGGTTGCGTTGGTGGA+TGG | 0.487638 | 7.4:+92351546 | MS.gene54461:CDS |
| ATTTAGAGATGAACCGGAGT+TGG | 0.489333 | 7.4:+92351608 | MS.gene54461:CDS |
| CGGTTCGGTTGAACCGGTTG+AGG | 0.489995 | 7.4:+92351473 | MS.gene54461:CDS |
| TGGTTCCTGTGAAGAAAAGA+AGG | 0.496741 | 7.4:+92351733 | MS.gene54461:CDS |
| AAGCCAAACCCGGTCTAAGC+CGG | 0.498806 | 7.4:-92351813 | None:intergenic |
| TCCGAAGTTATCGGCGTGAT+CGG | 0.502268 | 7.4:-92351237 | None:intergenic |
| GTTTATTATGGTCCGGAAGT+TGG | 0.502610 | 7.4:+92351172 | MS.gene54461:CDS |
| ATGTCATAGGCTTTGAGTGG+TGG | 0.508004 | 7.4:-92351282 | None:intergenic |
| GAGATGAACCGGAGTTGGAC+CGG | 0.508299 | 7.4:+92351613 | MS.gene54461:CDS |
| GACTCTTTGTTGAGTTAACT+CGG | 0.513097 | 7.4:-92351343 | None:intergenic |
| CCAACGCAACCGCCTCAGAC+TGG | 0.515999 | 7.4:-92351539 | None:intergenic |
| AGGATTGTGGTGTTGGCTCA+TGG | 0.516288 | 7.4:+92351766 | MS.gene54461:CDS |
| GCATAAGACCTTGTTTGCAA+TGG | 0.519342 | 7.4:+92350698 | MS.gene54461:CDS |
| GTTCGGGACCGGCGTTAACA+AGG | 0.520425 | 7.4:-92350795 | None:intergenic |
| CGGTTGAGGAGGTGATGAAC+CGG | 0.528263 | 7.4:+92351487 | MS.gene54461:CDS |
| AAAGAGTAGTAACGAGAACA+AGG | 0.530460 | 7.4:+92351422 | MS.gene54461:CDS |
| ACTTCGGAAGCAGCTGCTAA+CGG | 0.537457 | 7.4:+92351252 | MS.gene54461:CDS |
| TGTCATAGGCTTTGAGTGGT+GGG | 0.543552 | 7.4:-92351281 | None:intergenic |
| GGTTGTAGAGTACTAAGAAA+AGG | 0.544678 | 7.4:+92350658 | MS.gene54461:CDS |
| GCTCATGGAATGTGGAGTTG+GGG | 0.544869 | 7.4:+92351781 | MS.gene54461:CDS |
| TTCGGTTGAACCGGTTGAGG+AGG | 0.552024 | 7.4:+92351476 | MS.gene54461:CDS |
| GGTCCCGAACATCTTCGTCC+AGG | 0.558956 | 7.4:+92350808 | MS.gene54461:CDS |
| CGGAAGCAGCTGCTAACGGG+AGG | 0.561761 | 7.4:+92351256 | MS.gene54461:CDS |
| TCAGTCGGTTTATTATGGTC+CGG | 0.563725 | 7.4:+92351165 | MS.gene54461:CDS |
| TGGACGAAGATGTTCGGGAC+CGG | 0.564250 | 7.4:-92350806 | None:intergenic |
| ACCGATCACGCCGATAACTT+CGG | 0.564329 | 7.4:+92351236 | MS.gene54461:CDS |
| AACCCAATTTACGGTTCAGT+CGG | 0.566554 | 7.4:+92351150 | MS.gene54461:CDS |
| GTTGACCGAACCAGTGAGAG+TGG | 0.575650 | 7.4:+92351648 | MS.gene54461:CDS |
| GGAAGCAGCTGCTAACGGGA+GGG | 0.580906 | 7.4:+92351257 | MS.gene54461:CDS |
| CTCAACAAAGAGTCAAGACT+CGG | 0.582942 | 7.4:+92351352 | MS.gene54461:CDS |
| TGGTGTTGGCTCATGGAATG+TGG | 0.583661 | 7.4:+92351773 | MS.gene54461:CDS |
| GGTTTCACGTGTTTATCATG+TGG | 0.585512 | 7.4:+92351713 | MS.gene54461:CDS |
| TCCGGTTCAACTGAGCCGAC+CGG | 0.592967 | 7.4:+92351453 | MS.gene54461:CDS |
| TGACATCCGTCATGTGTCGA+AGG | 0.595504 | 7.4:+92351299 | MS.gene54461:CDS |
| TTTCCTCCTTCGACACATGA+CGG | 0.600098 | 7.4:-92351305 | None:intergenic |
| TCAAGACTCGGTCGCGTAAG+CGG | 0.609713 | 7.4:+92351364 | MS.gene54461:CDS |
| AGGGTTGTATTGAAGGATTG+TGG | 0.614044 | 7.4:+92351753 | MS.gene54461:CDS |
| TGTGTCGAAGGAGGAAAACT+CGG | 0.616290 | 7.4:+92351311 | MS.gene54461:CDS |
| AAAATGCGGATGAGTTGTAA+CGG | 0.616520 | 7.4:+92350637 | None:intergenic |
| GTCGATTAGCCACCAGTCTG+AGG | 0.618436 | 7.4:+92351527 | MS.gene54461:CDS |
| GTAGAATTTGGCGAGAAACA+CGG | 0.619114 | 7.4:-92350752 | None:intergenic |
| CAAGCCGAAGATACAAGAAG+AGG | 0.623975 | 7.4:+92351398 | MS.gene54461:CDS |
| GTTGGACCGGAAAATGAAGC+CGG | 0.627386 | 7.4:+92351626 | MS.gene54461:CDS |
| CATCCGTCATGTGTCGAAGG+AGG | 0.629554 | 7.4:+92351302 | MS.gene54461:CDS |
| ACCGGTTCAACCGAACCGGT+CGG | 0.636400 | 7.4:-92351468 | None:intergenic |
| ACGCAACCGCCTCAGACTGG+TGG | 0.636669 | 7.4:-92351536 | None:intergenic |
| ACGACTCATGACTAGCTGAC+CGG | 0.638954 | 7.4:-92351506 | None:intergenic |
| GCAGCTATGTCAAGCCGCAG+TGG | 0.645652 | 7.4:+92351194 | MS.gene54461:CDS |
| TTGAGTTAACTCGGTCGACG+CGG | 0.651446 | 7.4:-92351334 | None:intergenic |
| CTCATGAACCTTGTTAACGC+CGG | 0.654635 | 7.4:+92350787 | MS.gene54461:CDS |
| TCGTTGTTGTACGAAGCATG+TGG | 0.660850 | 7.4:+92351117 | MS.gene54461:CDS |
| CCGAACCAGTGAGAGTGGAG+AGG | 0.672740 | 7.4:+92351653 | MS.gene54461:CDS |
| GATTAGCCACCAGTCTGAGG+CGG | 0.698548 | 7.4:+92351530 | MS.gene54461:CDS |
| CGGATGTCATAGGCTTTGAG+TGG | 0.702654 | 7.4:-92351285 | None:intergenic |
| AAGAGTAGTAACGAGAACAA+GGG | 0.713391 | 7.4:+92351423 | MS.gene54461:CDS |
| GGTTCCTGTGAAGAAAAGAA+GGG | 0.756021 | 7.4:+92351734 | MS.gene54461:CDS |
| GAATTTGGCGAGAAACACGG+TGG | 0.783343 | 7.4:-92350749 | None:intergenic |
| TTTCAAAACAGCTTCCACTG+CGG | 0.791709 | 7.4:-92351208 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATATCAACTTTTGT+TGG | - | chr7.4:92350985-92351004 | None:intergenic | 20.0% |
| GTATTGCATGTTTGGATAAA+CGG | - | chr7.4:92350934-92350953 | None:intergenic | 30.0% | |
| TTAGTGCATGTTTAGATTGA+CGG | + | chr7.4:92350867-92350886 | MS.gene54461:intron | 30.0% | |
| ! | GATCTTATTTAGAGATGAAC+CGG | + | chr7.4:92351602-92351621 | MS.gene54461:CDS | 30.0% |
| ! | TTTTCCTCTTCTTGTATCTT+CGG | - | chr7.4:92351405-92351424 | None:intergenic | 30.0% |
| AAAGAGTAGTAACGAGAACA+AGG | + | chr7.4:92351422-92351441 | MS.gene54461:CDS | 35.0% | |
| AAGAGTAGTAACGAGAACAA+GGG | + | chr7.4:92351423-92351442 | MS.gene54461:CDS | 35.0% | |
| ACATGATAAACACGTGAAAC+CGG | - | chr7.4:92351714-92351733 | None:intergenic | 35.0% | |
| AGATGTGTGTATTGCATGTT+TGG | - | chr7.4:92350942-92350961 | None:intergenic | 35.0% | |
| CGAATAGTGAACCCAATTTA+CGG | + | chr7.4:92351141-92351160 | MS.gene54461:CDS | 35.0% | |
| GAAAAGAAGGGTTGTATTGA+AGG | + | chr7.4:92351746-92351765 | MS.gene54461:CDS | 35.0% | |
| GACTCTTTGTTGAGTTAACT+CGG | - | chr7.4:92351346-92351365 | None:intergenic | 35.0% | |
| ! | CTTTTGATCCATTGCAAACA+AGG | - | chr7.4:92350709-92350728 | None:intergenic | 35.0% |
| ! | GGTTGTAGAGTACTAAGAAA+AGG | + | chr7.4:92350658-92350677 | MS.gene54461:CDS | 35.0% |
| AAACCGACTGAACCGTAAAT+TGG | - | chr7.4:92351156-92351175 | None:intergenic | 40.0% | |
| AACCCAATTTACGGTTCAGT+CGG | + | chr7.4:92351150-92351169 | MS.gene54461:CDS | 40.0% | |
| AACCGACTGAACCGTAAATT+GGG | - | chr7.4:92351155-92351174 | None:intergenic | 40.0% | |
| AGGGTTGTATTGAAGGATTG+TGG | + | chr7.4:92351753-92351772 | MS.gene54461:CDS | 40.0% | |
| ATTTAGAGATGAACCGGAGT+TGG | + | chr7.4:92351608-92351627 | MS.gene54461:CDS | 40.0% | |
| CTCAACAAAGAGTCAAGACT+CGG | + | chr7.4:92351352-92351371 | MS.gene54461:CDS | 40.0% | |
| GAGAACAAGGGATTTGAATC+CGG | + | chr7.4:92351435-92351454 | MS.gene54461:CDS | 40.0% | |
| GGTTCCTGTGAAGAAAAGAA+GGG | + | chr7.4:92351734-92351753 | MS.gene54461:CDS | 40.0% | |
| GGTTTCACGTGTTTATCATG+TGG | + | chr7.4:92351713-92351732 | MS.gene54461:CDS | 40.0% | |
| GTAGAATTTGGCGAGAAACA+CGG | - | chr7.4:92350755-92350774 | None:intergenic | 40.0% | |
| GTATTGAAGGATTGTGGTGT+TGG | + | chr7.4:92351759-92351778 | MS.gene54461:CDS | 40.0% | |
| GTGTTTCTCGCCAAATTCTA+CGG | + | chr7.4:92350754-92350773 | MS.gene54461:CDS | 40.0% | |
| GTTTATTATGGTCCGGAAGT+TGG | + | chr7.4:92351172-92351191 | MS.gene54461:CDS | 40.0% | |
| TGGTTCCTGTGAAGAAAAGA+AGG | + | chr7.4:92351733-92351752 | MS.gene54461:CDS | 40.0% | |
| TTTCAAAACAGCTTCCACTG+CGG | - | chr7.4:92351211-92351230 | None:intergenic | 40.0% | |
| ! | ACAACCCTTCTTTTCTTCAC+AGG | - | chr7.4:92351741-92351760 | None:intergenic | 40.0% |
| ! | ACGGTTCAGTCGGTTTATTA+TGG | + | chr7.4:92351160-92351179 | MS.gene54461:CDS | 40.0% |
| ! | GCATAAGACCTTGTTTGCAA+TGG | + | chr7.4:92350698-92350717 | MS.gene54461:CDS | 40.0% |
| ! | TCAGTCGGTTTATTATGGTC+CGG | + | chr7.4:92351165-92351184 | MS.gene54461:CDS | 40.0% |
| !! | TGGCATTAGCTTGTGATTCA+GGG | - | chr7.4:92350732-92350751 | None:intergenic | 40.0% |
| !!! | AGTGTCACTTTTTACGAACC+TGG | - | chr7.4:92350829-92350848 | None:intergenic | 40.0% |
| CAAGCCGAAGATACAAGAAG+AGG | + | chr7.4:92351398-92351417 | MS.gene54461:CDS | 45.0% | |
| CTCATGAACCTTGTTAACGC+CGG | + | chr7.4:92350787-92350806 | MS.gene54461:CDS | 45.0% | |
| CTCTTCTTGTATCTTCGGCT+TGG | - | chr7.4:92351400-92351419 | None:intergenic | 45.0% | |
| TCGTTGTTGTACGAAGCATG+TGG | + | chr7.4:92351117-92351136 | MS.gene54461:CDS | 45.0% | |
| TGTGTCGAAGGAGGAAAACT+CGG | + | chr7.4:92351311-92351330 | MS.gene54461:CDS | 45.0% | |
| TTGACATAGCTGCCAACTTC+CGG | - | chr7.4:92351187-92351206 | None:intergenic | 45.0% | |
| TTTCCTCCTTCGACACATGA+CGG | - | chr7.4:92351308-92351327 | None:intergenic | 45.0% | |
| ! | TGGAGAGGAAAAGGTTGGTT+TGG | + | chr7.4:92351668-92351687 | MS.gene54461:CDS | 45.0% |
| ! | TTCATTTTCCGGTCCAACTC+CGG | - | chr7.4:92351624-92351643 | None:intergenic | 45.0% |
| !! | ATGTCATAGGCTTTGAGTGG+TGG | - | chr7.4:92351285-92351304 | None:intergenic | 45.0% |
| !! | GCAGTGGAAGCTGTTTTGAA+AGG | + | chr7.4:92351210-92351229 | MS.gene54461:CDS | 45.0% |
| !! | GTGGCATTAGCTTGTGATTC+AGG | - | chr7.4:92350733-92350752 | None:intergenic | 45.0% |
| !! | TGTCATAGGCTTTGAGTGGT+GGG | - | chr7.4:92351284-92351303 | None:intergenic | 45.0% |
| !! | TTGGTTTGGAGCTGACTCTT+GGG | + | chr7.4:92351682-92351701 | MS.gene54461:CDS | 45.0% |
| ACCAGCACGACCGTAGAATT+TGG | - | chr7.4:92350767-92350786 | None:intergenic | 50.0% | |
| ACCGATCACGCCGATAACTT+CGG | + | chr7.4:92351236-92351255 | MS.gene54461:CDS | 50.0% | |
| ACTTCGGAAGCAGCTGCTAA+CGG | + | chr7.4:92351252-92351271 | MS.gene54461:CDS | 50.0% | |
| CAGTGAGAGTGGAGAGGAAA+AGG | + | chr7.4:92351659-92351678 | MS.gene54461:CDS | 50.0% | |
| CGAACCTGGACGAAGATGTT+CGG | - | chr7.4:92350815-92350834 | None:intergenic | 50.0% | |
| GAACCTGGACGAAGATGTTC+GGG | - | chr7.4:92350814-92350833 | None:intergenic | 50.0% | |
| GAATTTGGCGAGAAACACGG+TGG | - | chr7.4:92350752-92350771 | None:intergenic | 50.0% | |
| GAGAGTGGAGAGGAAAAGGT+TGG | + | chr7.4:92351663-92351682 | MS.gene54461:CDS | 50.0% | |
| GCAGCTGCTTCCGAAGTTAT+CGG | - | chr7.4:92351249-92351268 | None:intergenic | 50.0% | |
| GCTCATGGAATGTGGAGTTG+GGG | + | chr7.4:92351781-92351800 | MS.gene54461:CDS | 50.0% | |
| GGAGTTGGGGCTTCAATATC+CGG | + | chr7.4:92351794-92351813 | MS.gene54461:CDS | 50.0% | |
| GGCTCATGGAATGTGGAGTT+GGG | + | chr7.4:92351780-92351799 | MS.gene54461:CDS | 50.0% | |
| GTTGGACCGGAAAATGAAGC+CGG | + | chr7.4:92351626-92351645 | MS.gene54461:CDS | 50.0% | |
| TCCGAAGTTATCGGCGTGAT+CGG | - | chr7.4:92351240-92351259 | None:intergenic | 50.0% | |
| TGACATCCGTCATGTGTCGA+AGG | + | chr7.4:92351299-92351318 | MS.gene54461:CDS | 50.0% | |
| TGGCTCATGGAATGTGGAGT+TGG | + | chr7.4:92351779-92351798 | MS.gene54461:CDS | 50.0% | |
| TTGAGTTAACTCGGTCGACG+CGG | - | chr7.4:92351337-92351356 | None:intergenic | 50.0% | |
| ! | ACGACTCATGACTAGCTGAC+CGG | - | chr7.4:92351509-92351528 | None:intergenic | 50.0% |
| ! | CTTTTCCTCTCCACTCTCAC+TGG | - | chr7.4:92351661-92351680 | None:intergenic | 50.0% |
| !! | AGGATTGTGGTGTTGGCTCA+TGG | + | chr7.4:92351766-92351785 | MS.gene54461:CDS | 50.0% |
| !! | CGACACATGACGGATGTCAT+AGG | - | chr7.4:92351298-92351317 | None:intergenic | 50.0% |
| !! | CGGATGTCATAGGCTTTGAG+TGG | - | chr7.4:92351288-92351307 | None:intergenic | 50.0% |
| !! | GGTCAACCGGCTTCATTTTC+CGG | - | chr7.4:92351635-92351654 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGAGCTGACTCT+TGG | + | chr7.4:92351681-92351700 | MS.gene54461:CDS | 50.0% |
| !! | TGGTGTTGGCTCATGGAATG+TGG | + | chr7.4:92351773-92351792 | MS.gene54461:CDS | 50.0% |
| CATCCGTCATGTGTCGAAGG+AGG | + | chr7.4:92351302-92351321 | MS.gene54461:CDS | 55.0% | |
| CGGTTCATCACCTCCTCAAC+CGG | - | chr7.4:92351489-92351508 | None:intergenic | 55.0% | |
| CGGTTGAGGAGGTGATGAAC+CGG | + | chr7.4:92351487-92351506 | MS.gene54461:CDS | 55.0% | |
| CTTCGGAAGCAGCTGCTAAC+GGG | + | chr7.4:92351253-92351272 | MS.gene54461:CDS | 55.0% | |
| GAGATGAACCGGAGTTGGAC+CGG | + | chr7.4:92351613-92351632 | MS.gene54461:CDS | 55.0% | |
| GCCAAATTCTACGGTCGTGC+TGG | + | chr7.4:92350763-92350782 | MS.gene54461:CDS | 55.0% | |
| GTTGACCGAACCAGTGAGAG+TGG | + | chr7.4:92351648-92351667 | MS.gene54461:CDS | 55.0% | |
| TGGACGAAGATGTTCGGGAC+CGG | - | chr7.4:92350809-92350828 | None:intergenic | 55.0% | |
| TTCAACTGAGCCGACCGGTT+CGG | + | chr7.4:92351458-92351477 | MS.gene54461:CDS | 55.0% | |
| TTCGGTTGAACCGGTTGAGG+AGG | + | chr7.4:92351476-92351495 | MS.gene54461:CDS | 55.0% | |
| ! | CCTCTCCACTCTCACTGGTT+CGG | - | chr7.4:92351656-92351675 | None:intergenic | 55.0% |
| ! | CTCAACCGGTTCAACCGAAC+CGG | - | chr7.4:92351475-92351494 | None:intergenic | 55.0% |
| ! | GATTAGCCACCAGTCTGAGG+CGG | + | chr7.4:92351530-92351549 | MS.gene54461:CDS | 55.0% |
| ! | GCTGACTCTTGGGCTTGAAC+CGG | + | chr7.4:92351692-92351711 | MS.gene54461:CDS | 55.0% |
| ! | GTCGATTAGCCACCAGTCTG+AGG | + | chr7.4:92351527-92351546 | MS.gene54461:CDS | 55.0% |
| ! | TCAAGACTCGGTCGCGTAAG+CGG | + | chr7.4:92351364-92351383 | MS.gene54461:CDS | 55.0% |
| !! | CTCTCACTGGTTCGGTCAAC+CGG | - | chr7.4:92351648-92351667 | None:intergenic | 55.0% |
| CCGAACCAGTGAGAGTGGAG+AGG | + | chr7.4:92351653-92351672 | MS.gene54461:CDS | 60.0% | |
| GAAGCAGCTGCTAACGGGAG+GGG | + | chr7.4:92351258-92351277 | MS.gene54461:CDS | 60.0% | |
| GCAGCTATGTCAAGCCGCAG+TGG | + | chr7.4:92351194-92351213 | MS.gene54461:CDS | 60.0% | |
| GGAAGCAGCTGCTAACGGGA+GGG | + | chr7.4:92351257-92351276 | MS.gene54461:CDS | 60.0% | |
| GGTCCCGAACATCTTCGTCC+AGG | + | chr7.4:92350808-92350827 | MS.gene54461:CDS | 60.0% | |
| GTTCGGGACCGGCGTTAACA+AGG | - | chr7.4:92350798-92350817 | None:intergenic | 60.0% | |
| TCCGGTTCAACTGAGCCGAC+CGG | + | chr7.4:92351453-92351472 | MS.gene54461:CDS | 60.0% | |
| ! | ACCGGTCGGCTCAGTTGAAC+CGG | - | chr7.4:92351457-92351476 | None:intergenic | 60.0% |
| ! | ACCGGTTCAACCGAACCGGT+CGG | - | chr7.4:92351471-92351490 | None:intergenic | 60.0% |
| !! | CGGTTCGGTTGAACCGGTTG+AGG | + | chr7.4:92351473-92351492 | MS.gene54461:CDS | 60.0% |
| ACGCAACCGCCTCAGACTGG+TGG | - | chr7.4:92351539-92351558 | None:intergenic | 65.0% | |
| CCAACGCAACCGCCTCAGAC+TGG | - | chr7.4:92351542-92351561 | None:intergenic | 65.0% | |
| CGGAAGCAGCTGCTAACGGG+AGG | + | chr7.4:92351256-92351275 | MS.gene54461:CDS | 65.0% | |
| ! | CCAGTCTGAGGCGGTTGCGT+TGG | + | chr7.4:92351539-92351558 | MS.gene54461:CDS | 65.0% |
| ! | GAGGCGGTTGCGTTGGTGGA+TGG | + | chr7.4:92351546-92351565 | MS.gene54461:CDS | 65.0% |
| ! | GTCTGAGGCGGTTGCGTTGG+TGG | + | chr7.4:92351542-92351561 | MS.gene54461:CDS | 65.0% |
| !! | GCCGACCGGTTCGGTTGAAC+CGG | + | chr7.4:92351467-92351486 | MS.gene54461:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 92350640 | 92351821 | 92350640 | ID=MS.gene54461 |
| chr7.4 | mRNA | 92350640 | 92351821 | 92350640 | ID=MS.gene54461.t1;Parent=MS.gene54461 |
| chr7.4 | exon | 92350640 | 92350829 | 92350640 | ID=MS.gene54461.t1.exon1;Parent=MS.gene54461.t1 |
| chr7.4 | CDS | 92350640 | 92350829 | 92350640 | ID=cds.MS.gene54461.t1;Parent=MS.gene54461.t1 |
| chr7.4 | exon | 92351106 | 92351821 | 92351106 | ID=MS.gene54461.t1.exon2;Parent=MS.gene54461.t1 |
| chr7.4 | CDS | 92351106 | 92351821 | 92351106 | ID=cds.MS.gene54461.t1;Parent=MS.gene54461.t1 |
| Gene Sequence |
| Protein sequence |
