Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54564.t1 | XP_013456287.1 | 96.4 | 973 | 35 | 0 | 1 | 973 | 1 | 973 | 0.00E+00 | 1827.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54564.t1 | Q6C8F7 | 27.3 | 143 | 98 | 3 | 29 | 168 | 6 | 145 | 7.2e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54564.t1 | A0A072UMN5 | 96.4 | 973 | 35 | 0 | 1 | 973 | 1 | 973 | 0.0e+00 | 1827.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053154 | MS.gene54564 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene54564 | 0.808709 | 2.71E-50 | -1.69E-46 |
| MS.gene055875 | MS.gene54564 | 0.826705 | 2.34E-54 | -1.69E-46 |
| MS.gene057755 | MS.gene54564 | 0.829958 | 3.85E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene54564 | 0.820301 | 7.37E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene54564 | 0.834089 | 3.67E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene54564 | 0.808735 | 2.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025598 | MS.gene54564 | PPI |
| MS.gene54564 | MS.gene54899 | PPI |
| MS.gene54564 | MS.gene68267 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54564.t1 | MTR_4g067110 | 96.403 | 973 | 35 | 0 | 1 | 973 | 1 | 973 | 0.0 | 1940 |
| MS.gene54564.t1 | MTR_2g098850 | 70.719 | 987 | 257 | 5 | 1 | 973 | 1 | 969 | 0.0 | 1412 |
| MS.gene54564.t1 | MTR_2g098850 | 70.010 | 987 | 244 | 5 | 1 | 973 | 1 | 949 | 0.0 | 1392 |
| MS.gene54564.t1 | MTR_4g039320 | 42.978 | 1061 | 484 | 24 | 1 | 973 | 1 | 1028 | 0.0 | 797 |
| MS.gene54564.t1 | MTR_7g091780 | 43.652 | 1024 | 486 | 19 | 2 | 973 | 6 | 990 | 0.0 | 788 |
| MS.gene54564.t1 | MTR_1g084090 | 33.430 | 1038 | 585 | 22 | 1 | 973 | 1 | 997 | 4.59e-176 | 538 |
| MS.gene54564.t1 | MTR_1g082810 | 48.315 | 89 | 46 | 0 | 49 | 137 | 11 | 99 | 1.12e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54564.t1 | AT1G05960 | 54.337 | 1003 | 407 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1007 |
| MS.gene54564.t1 | AT1G05960 | 54.337 | 1003 | 407 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1007 |
| MS.gene54564.t1 | AT1G05960 | 54.337 | 1003 | 407 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1007 |
| MS.gene54564.t1 | AT1G05960 | 53.027 | 1024 | 409 | 14 | 1 | 973 | 1 | 1003 | 0.0 | 992 |
| MS.gene54564.t1 | AT2G41830 | 42.392 | 1045 | 504 | 23 | 2 | 973 | 6 | 1025 | 0.0 | 778 |
| MS.gene54564.t1 | AT2G41830 | 39.235 | 915 | 458 | 23 | 132 | 973 | 1 | 890 | 0.0 | 588 |
| MS.gene54564.t1 | AT5G21080 | 54.528 | 508 | 222 | 4 | 1 | 500 | 1 | 507 | 0.0 | 573 |
| MS.gene54564.t1 | AT5G21080 | 37.500 | 416 | 200 | 13 | 583 | 970 | 635 | 1018 | 6.72e-54 | 204 |
| MS.gene54564.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 1.23e-180 | 550 |
| MS.gene54564.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 1.23e-180 | 550 |
| MS.gene54564.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 1.23e-180 | 550 |
| MS.gene54564.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 1.23e-180 | 550 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGGATGCTTTAATTAT+TGG | 0.142650 | 4.3:-37273986 | None:intergenic |
| CTGACTCTTGTGGCAGGGAC+TGG | 0.143185 | 4.3:+37270827 | MS.gene54564:CDS |
| GTCTCTTGCTTTCTTCAATC+TGG | 0.151994 | 4.3:+37272393 | MS.gene54564:CDS |
| TTATCTTCTGTTGTCCATTT+TGG | 0.195586 | 4.3:+37271251 | MS.gene54564:CDS |
| AATGGGACCTCCATTGTTTA+TGG | 0.219448 | 4.3:+37275111 | MS.gene54564:CDS |
| AACTAACTGTTGAATATATC+AGG | 0.226689 | 4.3:-37274003 | None:intergenic |
| AAAGCTTCAGTTGCAATAAT+TGG | 0.226788 | 4.3:+37271369 | MS.gene54564:CDS |
| ATATGTTCAACTTACCTTCT+TGG | 0.226797 | 4.3:-37273292 | None:intergenic |
| CAGCCACAAATTATCCTTCT+TGG | 0.232775 | 4.3:-37270807 | None:intergenic |
| TCCTCTTTGGGAAATTCCTT+GGG | 0.238244 | 4.3:-37270764 | None:intergenic |
| CAGTGTGAGGCTCTTGTATC+AGG | 0.239099 | 4.3:+37275627 | MS.gene54564:CDS |
| TGACTCTTGTGGCAGGGACT+GGG | 0.253799 | 4.3:+37270828 | MS.gene54564:CDS |
| GGGAAATTCCTTGGGGTGAT+TGG | 0.270431 | 4.3:-37270756 | None:intergenic |
| TGAAAGCTGCTGGATGTTAA+TGG | 0.286853 | 4.3:+37276425 | MS.gene54564:CDS |
| AGTTTCCCCTCTACCAATTA+AGG | 0.292504 | 4.3:+37275737 | MS.gene54564:CDS |
| TGTTAAAGAGCCGTCCTCTT+TGG | 0.296797 | 4.3:-37270777 | None:intergenic |
| TAGCTGCAGTTTCCAGTATT+GGG | 0.304149 | 4.3:+37271439 | MS.gene54564:CDS |
| AATCAATGGTCATCTGAAAA+AGG | 0.312373 | 4.3:+37271082 | MS.gene54564:CDS |
| ATCAAAGTGCTTGACCAAAA+TGG | 0.313251 | 4.3:-37271265 | None:intergenic |
| GTCCTCTTTGGGAAATTCCT+TGG | 0.314480 | 4.3:-37270765 | None:intergenic |
| CTCCCTCATGAGCATTTCAT+TGG | 0.314688 | 4.3:+37273268 | MS.gene54564:CDS |
| GCTTTCTTCAATCTGGGTTC+AGG | 0.315779 | 4.3:+37272400 | MS.gene54564:CDS |
| AAATTTACCTCATCAAAATC+TGG | 0.317492 | 4.3:-37275175 | None:intergenic |
| GACAGATTTCCACTTGGTTC+AGG | 0.319543 | 4.3:-37275313 | None:intergenic |
| AAAGGCTTGCTTGTATAATA+TGG | 0.324194 | 4.3:+37270988 | MS.gene54564:CDS |
| CTGTGGTTAGGTGCGTTTCA+TGG | 0.325394 | 4.3:+37270456 | MS.gene54564:intron |
| TACATACATGTTCAATTTAG+AGG | 0.325825 | 4.3:+37270227 | MS.gene54564:CDS |
| CCTCACACTGGTTCTTCATT+TGG | 0.326955 | 4.3:-37275614 | None:intergenic |
| CTGGGTTCAGGCAACATCTA+TGG | 0.331394 | 4.3:+37272412 | MS.gene54564:CDS |
| TGAGCCAATTGACACAGTTT+AGG | 0.338299 | 4.3:-37270258 | None:intergenic |
| GTGTCAATTGGCTCAAGAAA+TGG | 0.343671 | 4.3:+37270266 | MS.gene54564:CDS |
| CCAATTCGTGTTTCGTGGTC+AGG | 0.359383 | 4.3:-37271882 | None:intergenic |
| ATAGATCATGTTAGTGACTT+TGG | 0.359929 | 4.3:+37270706 | MS.gene54564:intron |
| GTTAAAGAGCCGTCCTCTTT+GGG | 0.361240 | 4.3:-37270776 | None:intergenic |
| TGGGGTGATTGGAGCTAGAT+TGG | 0.362239 | 4.3:-37270745 | None:intergenic |
| CTTGTATAATATGGTCAAAC+TGG | 0.366128 | 4.3:+37270997 | MS.gene54564:CDS |
| CTGACCTCATTAAGCACTTA+AGG | 0.367101 | 4.3:+37271400 | MS.gene54564:CDS |
| TCCACAGACATCCAGTTACT+TGG | 0.369843 | 4.3:+37273217 | MS.gene54564:intron |
| TGTGGCTTCGGCAGCTTTGA+TGG | 0.372597 | 4.3:+37275276 | MS.gene54564:CDS |
| TGCAGCTATTAAGTCACTTT+CGG | 0.379707 | 4.3:+37274259 | MS.gene54564:CDS |
| GACCAAATATTCAAAATTAC+CGG | 0.380879 | 4.3:+37274334 | MS.gene54564:CDS |
| TAGGGGCAGAACAGATCAAT+AGG | 0.383284 | 4.3:+37272027 | MS.gene54564:CDS |
| TCTTACGAAAGCCAAGTAAC+TGG | 0.383620 | 4.3:-37273228 | None:intergenic |
| TGTCAATTGGCTCAAGAAAT+GGG | 0.383681 | 4.3:+37270267 | MS.gene54564:CDS |
| TCTCTTGCTTTCTTCAATCT+GGG | 0.383800 | 4.3:+37272394 | MS.gene54564:CDS |
| TGGTTCTTCATTTGGTCATA+AGG | 0.384205 | 4.3:-37275606 | None:intergenic |
| TGTGCAGACACTGGAGTATT+CGG | 0.387464 | 4.3:+37276276 | MS.gene54564:intron |
| AGCTTTCAAGAATTTATCAT+AGG | 0.388126 | 4.3:-37276410 | None:intergenic |
| CCTGACCACGAAACACGAAT+TGG | 0.390664 | 4.3:+37271882 | MS.gene54564:CDS |
| GAATCAGAGAAGATAATCTA+TGG | 0.396697 | 4.3:+37274218 | MS.gene54564:CDS |
| TATTCCTAAACTGTGTCAAT+TGG | 0.399534 | 4.3:+37270254 | MS.gene54564:CDS |
| TCATAAGGTACAGGATTTGC+AGG | 0.399980 | 4.3:-37275591 | None:intergenic |
| AATTGATGAAACAGAGCATC+AGG | 0.400197 | 4.3:-37271840 | None:intergenic |
| CTGACCACGAAACACGAATT+GGG | 0.400617 | 4.3:+37271883 | MS.gene54564:CDS |
| GGGAACTCAATCTGAGCAAC+TGG | 0.401860 | 4.3:-37275154 | None:intergenic |
| TTAGCTGCAGTTTCCAGTAT+TGG | 0.405516 | 4.3:+37271438 | MS.gene54564:CDS |
| ATACTCATCATTCCCAATAC+TGG | 0.405693 | 4.3:-37271451 | None:intergenic |
| GATAAATTCTTGAAAGCTGC+TGG | 0.405792 | 4.3:+37276415 | MS.gene54564:CDS |
| ATCACATCTTTCAATGGACT+TGG | 0.413254 | 4.3:+37270486 | MS.gene54564:CDS |
| AGGACCCATCCTTGATTTGA+TGG | 0.413478 | 4.3:+37271616 | MS.gene54564:CDS |
| GTAGTTTATTAGAGATTGTT+CGG | 0.415919 | 4.3:+37269767 | MS.gene54564:CDS |
| GATTAACGCTTAAAATCGTC+AGG | 0.425004 | 4.3:-37275366 | None:intergenic |
| TTGTTTCTAGATTGTGGCTT+CGG | 0.428600 | 4.3:+37275264 | MS.gene54564:intron |
| GATTTGCGTAATGAAGTCTT+TGG | 0.428917 | 4.3:+37269190 | MS.gene54564:CDS |
| TTTCCGATGCTCTAAATCTT+GGG | 0.429222 | 4.3:+37272126 | MS.gene54564:CDS |
| CTGCTAAAGATCCGGCATAT+TGG | 0.430399 | 4.3:+37270963 | MS.gene54564:CDS |
| TCATCAATTGCTCCTGGTGA+TGG | 0.432853 | 4.3:+37271854 | MS.gene54564:CDS |
| TCGTTCTAGCTCGAGACAAC+CGG | 0.435337 | 4.3:+37268141 | MS.gene54564:CDS |
| ACAGATGAAATCAGGATCAT+AGG | 0.437523 | 4.3:+37269811 | MS.gene54564:CDS |
| GGTACAGGATTTGCAGGAAT+GGG | 0.439740 | 4.3:-37275585 | None:intergenic |
| CTCAGGTAAATTGCCTGTCT+TGG | 0.441203 | 4.3:-37273957 | None:intergenic |
| TTGAGCTTGTCGATGATGTC+AGG | 0.442296 | 4.3:+37274177 | MS.gene54564:CDS |
| TTAATTATTGGAATTAGCTC+AGG | 0.445901 | 4.3:-37273974 | None:intergenic |
| TTCATTTGGTCATAAGGTAC+AGG | 0.451138 | 4.3:-37275600 | None:intergenic |
| CCCATTGGATATGCATCATC+AGG | 0.452179 | 4.3:-37275094 | None:intergenic |
| TACTGAACTTCAATCTGCCT+TGG | 0.453317 | 4.3:+37271482 | MS.gene54564:CDS |
| GACTCTTGTGGCAGGGACTG+GGG | 0.454897 | 4.3:+37270829 | MS.gene54564:CDS |
| GCTTTGATGGACGAAGAGAC+TGG | 0.457425 | 4.3:+37275289 | MS.gene54564:CDS |
| TTGTGGCTGACTCTTGTGGC+AGG | 0.467015 | 4.3:+37270821 | MS.gene54564:CDS |
| CTTATATTCTCTGCCAAGAC+AGG | 0.472578 | 4.3:+37273944 | MS.gene54564:CDS |
| AAAATTCTTATCGTCATGTA+AGG | 0.472661 | 4.3:+37269243 | MS.gene54564:CDS |
| TTCTTGTGATATGACACGTT+AGG | 0.474759 | 4.3:-37271731 | None:intergenic |
| GCGCCCCAATTCGTGTTTCG+TGG | 0.474866 | 4.3:-37271887 | None:intergenic |
| AAACTCGAACAGATGAAATC+AGG | 0.476249 | 4.3:+37269803 | MS.gene54564:CDS |
| GAACAACAGGTTGGGGATGT+AGG | 0.477228 | 4.3:+37271596 | MS.gene54564:intron |
| AACTTCTTGTAACGCTTCAC+CGG | 0.477865 | 4.3:-37268160 | None:intergenic |
| GTCACTTTCGGCCGTAGAGT+TGG | 0.486619 | 4.3:+37274271 | MS.gene54564:CDS |
| GCTTTACGTCTCCGTTCAGC+TGG | 0.486622 | 4.3:+37270303 | MS.gene54564:CDS |
| TGTGGTTAGGTGCGTTTCAT+GGG | 0.486827 | 4.3:+37270457 | MS.gene54564:intron |
| GCTTTCAAGAATTTATCATA+GGG | 0.487556 | 4.3:-37276409 | None:intergenic |
| GATTGTTGTTCTTGCTACAA+TGG | 0.492747 | 4.3:-37271669 | None:intergenic |
| CGAGAGCCTCTTGATTCAGC+AGG | 0.493847 | 4.3:+37271995 | MS.gene54564:CDS |
| CGTTAATCAACTCTTAGAAT+CGG | 0.495438 | 4.3:+37275381 | MS.gene54564:CDS |
| AATTTATCATAGGGGCTGGC+AGG | 0.496112 | 4.3:-37276400 | None:intergenic |
| CTTGGAGCAAATATGTTACA+AGG | 0.498122 | 4.3:+37269168 | MS.gene54564:CDS |
| TATGCAGATTACTGATAACT+TGG | 0.503042 | 4.3:+37269150 | MS.gene54564:intron |
| CATCCTTGATTTGATGGCTG+TGG | 0.503859 | 4.3:+37271622 | MS.gene54564:CDS |
| CAAGAATTTATCATAGGGGC+TGG | 0.506399 | 4.3:-37276404 | None:intergenic |
| TTTCGTAAGATGTTTCCAAC+TGG | 0.507563 | 4.3:+37273241 | MS.gene54564:CDS |
| AGTGACTTTGGAGAATTACA+TGG | 0.508157 | 4.3:+37270718 | MS.gene54564:CDS |
| ATACTGACCTTAATTGGTAG+AGG | 0.508185 | 4.3:-37275744 | None:intergenic |
| TCATCGACAAGCTCAAGAAA+AGG | 0.509001 | 4.3:-37274170 | None:intergenic |
| TCTTGTGATATGACACGTTA+GGG | 0.510444 | 4.3:-37271730 | None:intergenic |
| TGTCGATGATGTCAGGCTAC+AGG | 0.515098 | 4.3:+37274184 | MS.gene54564:CDS |
| TCTGTTTCATCAATTGCTCC+TGG | 0.517320 | 4.3:+37271848 | MS.gene54564:CDS |
| GAAAAGCTGTAAACACGGTA+TGG | 0.518094 | 4.3:-37272107 | None:intergenic |
| CAGCAGAGGTTGCCACAGGC+AGG | 0.518782 | 4.3:-37268103 | None:intergenic |
| CATAAAGAAACAACTTGCAC+AGG | 0.518963 | 4.3:+37275063 | MS.gene54564:CDS |
| CAGGGATACTGCTAAAGATC+CGG | 0.519659 | 4.3:+37270955 | MS.gene54564:intron |
| GGTCAGGATGAGCCATCACC+AGG | 0.522671 | 4.3:-37271866 | None:intergenic |
| CACAGCCATCAAATCAAGGA+TGG | 0.524628 | 4.3:-37271621 | None:intergenic |
| CCTGATGATGCATATCCAAT+GGG | 0.525211 | 4.3:+37275094 | MS.gene54564:CDS |
| CAGGAGGTCTCTATTTACCT+TGG | 0.527634 | 4.3:+37273910 | MS.gene54564:CDS |
| AGGTACAGGATTTGCAGGAA+TGG | 0.529133 | 4.3:-37275586 | None:intergenic |
| CAGTCTGACAGATTTCCACT+TGG | 0.530024 | 4.3:-37275319 | None:intergenic |
| GTTAGACCATAAAACAATGA+TGG | 0.531776 | 4.3:+37271956 | MS.gene54564:CDS |
| TCCTGATGATGCATATCCAA+TGG | 0.532704 | 4.3:+37275093 | MS.gene54564:CDS |
| ATAATATTAATCTGAAGGAT+AGG | 0.533027 | 4.3:-37271309 | None:intergenic |
| TTTATTGTTCACTCGTTCAA+AGG | 0.535348 | 4.3:+37272484 | MS.gene54564:CDS |
| TACTGACCTTAATTGGTAGA+GGG | 0.537518 | 4.3:-37275743 | None:intergenic |
| ATAAACAATGGAGGTCCCAT+TGG | 0.537727 | 4.3:-37275109 | None:intergenic |
| AGGAGGGTTGTGCCTGCCTG+TGG | 0.537862 | 4.3:+37268091 | MS.gene54564:CDS |
| CTTTGATGGACGAAGAGACT+GGG | 0.537961 | 4.3:+37275290 | MS.gene54564:CDS |
| GAAGCGTTACAAGAAGTTGT+TGG | 0.538026 | 4.3:+37268165 | MS.gene54564:CDS |
| GCCATAGCCTCAAAATTCGC+CGG | 0.538194 | 4.3:-37272443 | None:intergenic |
| ACTACTGCCCCTCCTTCCAC+AGG | 0.538901 | 4.3:-37272053 | None:intergenic |
| AGCTGTAAACACGGTATGGA+AGG | 0.539297 | 4.3:-37272103 | None:intergenic |
| CCATAGCCTCAAAATTCGCC+GGG | 0.542119 | 4.3:-37272442 | None:intergenic |
| AATTTACCTCATCAAAATCT+GGG | 0.542840 | 4.3:-37275174 | None:intergenic |
| AGCTTTCCTGCTGAATCAAG+AGG | 0.543777 | 4.3:-37272001 | None:intergenic |
| TGAGCAATCACATCTTTCAA+TGG | 0.544357 | 4.3:+37270480 | MS.gene54564:CDS |
| ACATACATGTTCAATTTAGA+GGG | 0.550480 | 4.3:+37270228 | MS.gene54564:CDS |
| AGCATTTCATTGGACCAAGA+AGG | 0.553364 | 4.3:+37273278 | MS.gene54564:CDS |
| AACATCTATGGACAATGGCC+CGG | 0.554920 | 4.3:+37272424 | MS.gene54564:CDS |
| TCTCCAAGAAGGATAATTTG+TGG | 0.557351 | 4.3:+37270804 | MS.gene54564:CDS |
| CCTCTTTGGGAAATTCCTTG+GGG | 0.558009 | 4.3:-37270763 | None:intergenic |
| ACACCACAGCCATCAAATCA+AGG | 0.559488 | 4.3:-37271625 | None:intergenic |
| TTCGGAAGGCGATCTGAAGT+TGG | 0.560737 | 4.3:+37276294 | MS.gene54564:CDS |
| CTAATGCTCTAGTCTCCTGC+TGG | 0.560946 | 4.3:-37275689 | None:intergenic |
| GTGGTAGTCTCAAAGAATGT+TGG | 0.562576 | 4.3:-37276378 | None:intergenic |
| TTTGGAAACCGCACGGCAAG+TGG | 0.564174 | 4.3:+37275554 | MS.gene54564:CDS |
| TTAAATTTAAAATAGACAGA+TGG | 0.564230 | 4.3:+37270204 | MS.gene54564:intron |
| TTTCCCAAGATTTAGAGCAT+CGG | 0.566217 | 4.3:-37272129 | None:intergenic |
| TGTGGCTGACTCTTGTGGCA+GGG | 0.566984 | 4.3:+37270822 | MS.gene54564:CDS |
| TAATATGGTCAAACTGGCAA+GGG | 0.567973 | 4.3:+37271003 | MS.gene54564:CDS |
| ATAGGAAACCTGTGGAAGGA+GGG | 0.569341 | 4.3:+37272045 | MS.gene54564:CDS |
| TTTAACAGATATCTCCAAGA+AGG | 0.573391 | 4.3:+37270793 | MS.gene54564:CDS |
| TAAAACAATGATGGCTGAGA+AGG | 0.574833 | 4.3:+37271965 | MS.gene54564:CDS |
| ATAATATGGTCAAACTGGCA+AGG | 0.575219 | 4.3:+37271002 | MS.gene54564:CDS |
| TAATTTGTGGCTGACTCTTG+TGG | 0.576163 | 4.3:+37270817 | MS.gene54564:CDS |
| TGTTGATAATATTAATCTGA+AGG | 0.578916 | 4.3:-37271314 | None:intergenic |
| CAAGCCTTTGACCAATATGC+CGG | 0.579481 | 4.3:-37270974 | None:intergenic |
| AAATCCGTTGAGAATTCCTA+AGG | 0.582010 | 4.3:+37268922 | MS.gene54564:CDS |
| CTTCTTATCATCCAACTCTA+CGG | 0.583488 | 4.3:-37274282 | None:intergenic |
| GCAACTGGAGAACATGTCCT+TGG | 0.584551 | 4.3:-37275139 | None:intergenic |
| TTGTAATATACACATTTCCA+AGG | 0.585906 | 4.3:-37271499 | None:intergenic |
| TATAAGCATGTACGATGCCA+AGG | 0.585994 | 4.3:-37273927 | None:intergenic |
| TGAATCAAGAGGCTCTCGCT+TGG | 0.587602 | 4.3:-37271990 | None:intergenic |
| GTCAATTGGCTCAAGAAATG+GGG | 0.587894 | 4.3:+37270268 | MS.gene54564:CDS |
| AATAGAGACCTCCTGCGAGA+TGG | 0.591742 | 4.3:-37273902 | None:intergenic |
| AATAGGAAACCTGTGGAAGG+AGG | 0.593531 | 4.3:+37272044 | MS.gene54564:CDS |
| ACTAACTGTTGAATATATCA+GGG | 0.596910 | 4.3:-37274002 | None:intergenic |
| GGTCCAATGAAATGCTCATG+AGG | 0.596995 | 4.3:-37273271 | None:intergenic |
| GAGGTTTACAACCATCTCGC+AGG | 0.597698 | 4.3:+37273891 | MS.gene54564:CDS |
| AGTGTGAGGCTCTTGTATCA+GGG | 0.600633 | 4.3:+37275628 | MS.gene54564:CDS |
| TGACCACGAAACACGAATTG+GGG | 0.603005 | 4.3:+37271884 | MS.gene54564:CDS |
| CAGTAGTTGATGTCAGCAGT+AGG | 0.605929 | 4.3:+37272069 | MS.gene54564:CDS |
| GTGATATGACACGTTAGGGA+TGG | 0.608957 | 4.3:-37271726 | None:intergenic |
| TGTCTATAGTCATACGAACA+CGG | 0.609919 | 4.3:-37276355 | None:intergenic |
| CTTGGTGTCTCCATAAACAA+TGG | 0.611978 | 4.3:-37275121 | None:intergenic |
| GAAAACCTCACCTGATTACG+AGG | 0.612901 | 4.3:-37268199 | None:intergenic |
| TAGGAAACCTGTGGAAGGAG+GGG | 0.615399 | 4.3:+37272046 | MS.gene54564:CDS |
| ACCTCCTTAAGTGCTTAATG+AGG | 0.616844 | 4.3:-37271404 | None:intergenic |
| AACACAGCAGAGGTTGCCAC+AGG | 0.618662 | 4.3:-37268107 | None:intergenic |
| GTGACTTTGGAGAATTACAT+GGG | 0.619470 | 4.3:+37270719 | MS.gene54564:CDS |
| TTATCATAGGGGCTGGCAGG+TGG | 0.621286 | 4.3:-37276397 | None:intergenic |
| ACTACAAGCTCTATCCTACA+TGG | 0.622795 | 4.3:+37270326 | MS.gene54564:CDS |
| AGAACAAAGCAGTACCATGT+AGG | 0.622976 | 4.3:-37270340 | None:intergenic |
| TAACGTGTCATATCACAAGA+AGG | 0.624982 | 4.3:+37271733 | MS.gene54564:CDS |
| AGATCCGGCATATTGGTCAA+AGG | 0.627533 | 4.3:+37270970 | MS.gene54564:CDS |
| ACTGACCTTAATTGGTAGAG+GGG | 0.629528 | 4.3:-37275742 | None:intergenic |
| CTCGAGCTAGAACGAAGAGA+AGG | 0.629802 | 4.3:-37268133 | None:intergenic |
| ACAGCCATCAAATCAAGGAT+GGG | 0.630952 | 4.3:-37271620 | None:intergenic |
| AACTGGGGAGAAAACAGAGA+TGG | 0.631697 | 4.3:-37271936 | None:intergenic |
| AAGGAATTTCCCAAAGAGGA+CGG | 0.633587 | 4.3:+37270767 | MS.gene54564:CDS |
| ATCAATAGGAAACCTGTGGA+AGG | 0.638646 | 4.3:+37272041 | MS.gene54564:CDS |
| TATATTACAACTTTCAAACA+AGG | 0.638772 | 4.3:+37271512 | MS.gene54564:CDS |
| CATCGGAAAAGCTGTAAACA+CGG | 0.640688 | 4.3:-37272112 | None:intergenic |
| CTTTCAAGAATTTATCATAG+GGG | 0.640709 | 4.3:-37276408 | None:intergenic |
| TTTACCTTAGGAATTCTCAA+CGG | 0.641215 | 4.3:-37268926 | None:intergenic |
| CCCCAAGGAATTTCCCAAAG+AGG | 0.642073 | 4.3:+37270763 | MS.gene54564:CDS |
| AAGAAAGCAAGAGACTCACT+TGG | 0.642476 | 4.3:-37272385 | None:intergenic |
| GTCCAATGAAATGCTCATGA+GGG | 0.642966 | 4.3:-37273270 | None:intergenic |
| GAGCTTGTAGTCCAGCTGAA+CGG | 0.644770 | 4.3:-37270314 | None:intergenic |
| ATCTAGCTCCAATCACCCCA+AGG | 0.646399 | 4.3:+37270748 | MS.gene54564:CDS |
| ACAGATCAATAGGAAACCTG+TGG | 0.646808 | 4.3:+37272037 | MS.gene54564:CDS |
| GTACAGGATTTGCAGGAATG+GGG | 0.647087 | 4.3:-37275584 | None:intergenic |
| GTCTATAGTCATACGAACAC+GGG | 0.648189 | 4.3:-37276354 | None:intergenic |
| ATAAAGAAACAACTTGCACA+GGG | 0.651476 | 4.3:+37275064 | MS.gene54564:CDS |
| GAGAAGGACAAACACAGCAG+AGG | 0.659420 | 4.3:-37268117 | None:intergenic |
| ATTGATGAAACAGAGCATCA+GGG | 0.660307 | 4.3:-37271839 | None:intergenic |
| CAAATATTCAAAATTACCGG+AGG | 0.662296 | 4.3:+37274337 | MS.gene54564:CDS |
| CAGGCAACATCTATGGACAA+TGG | 0.662814 | 4.3:+37272419 | MS.gene54564:CDS |
| CTGATACAAGAGCCTCACAC+TGG | 0.662972 | 4.3:-37275626 | None:intergenic |
| CAGACACTGGAGTATTCGGA+AGG | 0.663133 | 4.3:+37276280 | MS.gene54564:intron |
| GTTTACAACCATCTCGCAGG+AGG | 0.666560 | 4.3:+37273894 | MS.gene54564:CDS |
| ACCTCATTAAGCACTTAAGG+AGG | 0.668442 | 4.3:+37271403 | MS.gene54564:CDS |
| TCAATTGGCTCAAGAAATGG+GGG | 0.671017 | 4.3:+37270269 | MS.gene54564:CDS |
| GAAACTAGCCACTTGCCGTG+CGG | 0.674563 | 4.3:-37275562 | None:intergenic |
| GAGACTGGGCCTGAACCAAG+TGG | 0.675352 | 4.3:+37275304 | MS.gene54564:CDS |
| GGTGTCTCCATAAACAATGG+AGG | 0.682652 | 4.3:-37275118 | None:intergenic |
| TCATGAGGGAGAATGCCAGT+TGG | 0.689364 | 4.3:-37273256 | None:intergenic |
| CCAAATGAAGAACCAGTGTG+AGG | 0.696233 | 4.3:+37275614 | MS.gene54564:CDS |
| AGGTTATCGACAGAGAGCAA+CGG | 0.698943 | 4.3:-37275346 | None:intergenic |
| CATTGTTTATGGAGACACCA+AGG | 0.708806 | 4.3:+37275122 | MS.gene54564:CDS |
| AAAACCTCACCTGATTACGA+GGG | 0.709357 | 4.3:-37268198 | None:intergenic |
| CAAGGGAAGCTACAACTCTG+CGG | 0.734909 | 4.3:+37271020 | MS.gene54564:CDS |
| TAAAGAAACAACTTGCACAG+GGG | 0.750879 | 4.3:+37275065 | MS.gene54564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 37268076 | 37276444 | 37268076 | ID=MS.gene54564 |
| chr4.3 | mRNA | 37268076 | 37276444 | 37268076 | ID=MS.gene54564.t1;Parent=MS.gene54564 |
| chr4.3 | exon | 37268076 | 37268210 | 37268076 | ID=MS.gene54564.t1.exon1;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37268076 | 37268210 | 37268076 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37268869 | 37268943 | 37268869 | ID=MS.gene54564.t1.exon2;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37268869 | 37268943 | 37268869 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37269157 | 37269272 | 37269157 | ID=MS.gene54564.t1.exon3;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37269157 | 37269272 | 37269157 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37269753 | 37269867 | 37269753 | ID=MS.gene54564.t1.exon4;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37269753 | 37269867 | 37269753 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37270219 | 37270347 | 37270219 | ID=MS.gene54564.t1.exon5;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37270219 | 37270347 | 37270219 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37270466 | 37270513 | 37270466 | ID=MS.gene54564.t1.exon6;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37270466 | 37270513 | 37270466 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37270710 | 37270864 | 37270710 | ID=MS.gene54564.t1.exon7;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37270710 | 37270864 | 37270710 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37270958 | 37271154 | 37270958 | ID=MS.gene54564.t1.exon8;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37270958 | 37271154 | 37270958 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37271241 | 37271533 | 37271241 | ID=MS.gene54564.t1.exon9;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37271241 | 37271533 | 37271241 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37271605 | 37271754 | 37271605 | ID=MS.gene54564.t1.exon10;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37271605 | 37271754 | 37271605 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37271834 | 37272154 | 37271834 | ID=MS.gene54564.t1.exon11;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37271834 | 37272154 | 37271834 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37272356 | 37272505 | 37272356 | ID=MS.gene54564.t1.exon12;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37272356 | 37272505 | 37272356 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37273224 | 37273299 | 37273224 | ID=MS.gene54564.t1.exon13;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37273224 | 37273299 | 37273224 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37273891 | 37274018 | 37273891 | ID=MS.gene54564.t1.exon14;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37273891 | 37274018 | 37273891 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37274164 | 37274358 | 37274164 | ID=MS.gene54564.t1.exon15;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37274164 | 37274358 | 37274164 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37275049 | 37275189 | 37275049 | ID=MS.gene54564.t1.exon16;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37275049 | 37275189 | 37275049 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37275274 | 37275402 | 37275274 | ID=MS.gene54564.t1.exon17;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37275274 | 37275402 | 37275274 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37275552 | 37275758 | 37275552 | ID=MS.gene54564.t1.exon18;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37275552 | 37275758 | 37275552 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| chr4.3 | exon | 37276283 | 37276444 | 37276283 | ID=MS.gene54564.t1.exon19;Parent=MS.gene54564.t1 |
| chr4.3 | CDS | 37276283 | 37276444 | 37276283 | ID=cds.MS.gene54564.t1;Parent=MS.gene54564.t1 |
| Gene Sequence |
| Protein sequence |
