Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54620.t1 | XP_003611388.2 | 96.4 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 9.40E-145 | 522.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54620.t1 | O23547 | 62.3 | 239 | 87 | 3 | 12 | 249 | 11 | 247 | 5.7e-90 | 332.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54620.t1 | G7JYL2 | 96.4 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 6.8e-145 | 522.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene54620 | 0.811316 | 7.44E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene54620 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene54620 | 0.841858 | 3.68E-58 | -1.69E-46 |
| MS.gene051234 | MS.gene54620 | 0.812599 | 3.91E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene54620 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene54620 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene54620 | 0.806855 | 6.72E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene54620 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene54620 | 0.800854 | 1.19E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene54620 | 0.807599 | 4.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54620 | MS.gene28934 | PPI |
| MS.gene54620 | MS.gene003384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54620.t1 | MTR_5g013440 | 96.429 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 0.0 | 508 |
| MS.gene54620.t1 | MTR_4g099370 | 74.502 | 251 | 64 | 0 | 2 | 252 | 1 | 251 | 1.12e-147 | 412 |
| MS.gene54620.t1 | MTR_4g099400 | 59.763 | 169 | 68 | 0 | 82 | 250 | 10 | 178 | 6.56e-76 | 228 |
| MS.gene54620.t1 | MTR_4g098930 | 40.239 | 251 | 142 | 2 | 10 | 252 | 3 | 253 | 2.78e-62 | 196 |
| MS.gene54620.t1 | MTR_4g075790 | 40.724 | 221 | 127 | 3 | 32 | 251 | 26 | 243 | 6.75e-57 | 182 |
| MS.gene54620.t1 | MTR_4g075790 | 38.824 | 170 | 103 | 1 | 82 | 251 | 9 | 177 | 6.35e-42 | 142 |
| MS.gene54620.t1 | MTR_0809s0010 | 32.046 | 259 | 155 | 7 | 10 | 251 | 16 | 270 | 3.71e-32 | 119 |
| MS.gene54620.t1 | MTR_4g028640 | 30.736 | 231 | 150 | 7 | 26 | 251 | 39 | 264 | 1.80e-28 | 109 |
| MS.gene54620.t1 | MTR_2g090265 | 30.837 | 227 | 142 | 7 | 34 | 252 | 38 | 257 | 2.41e-28 | 108 |
| MS.gene54620.t1 | MTR_0118s0070 | 33.921 | 227 | 137 | 8 | 34 | 251 | 53 | 275 | 4.89e-28 | 108 |
| MS.gene54620.t1 | MTR_2g090270 | 30.088 | 226 | 143 | 7 | 34 | 251 | 40 | 258 | 2.42e-27 | 106 |
| MS.gene54620.t1 | MTR_0122s0020 | 30.531 | 226 | 142 | 7 | 34 | 251 | 46 | 264 | 5.91e-26 | 102 |
| MS.gene54620.t1 | MTR_1g085460 | 28.326 | 233 | 146 | 9 | 32 | 251 | 33 | 257 | 3.23e-21 | 89.7 |
| MS.gene54620.t1 | MTR_4g102450 | 25.769 | 260 | 166 | 9 | 12 | 252 | 11 | 262 | 4.70e-21 | 89.4 |
| MS.gene54620.t1 | MTR_7g111010 | 26.437 | 261 | 160 | 12 | 12 | 251 | 5 | 254 | 4.77e-21 | 89.4 |
| MS.gene54620.t1 | MTR_3g435430 | 28.099 | 242 | 158 | 9 | 18 | 251 | 14 | 247 | 8.83e-21 | 88.6 |
| MS.gene54620.t1 | MTR_7g013140 | 27.755 | 245 | 162 | 10 | 15 | 251 | 14 | 251 | 1.59e-20 | 87.8 |
| MS.gene54620.t1 | MTR_7g013120 | 27.236 | 246 | 164 | 8 | 15 | 251 | 14 | 253 | 8.74e-20 | 85.9 |
| MS.gene54620.t1 | MTR_7g110990 | 26.695 | 236 | 146 | 10 | 32 | 251 | 15 | 239 | 1.38e-19 | 85.1 |
| MS.gene54620.t1 | MTR_8g058990 | 27.778 | 252 | 166 | 10 | 9 | 251 | 9 | 253 | 1.58e-19 | 85.1 |
| MS.gene54620.t1 | MTR_3g094040 | 27.928 | 222 | 145 | 8 | 32 | 245 | 34 | 248 | 1.73e-19 | 85.1 |
| MS.gene54620.t1 | MTR_3g094060 | 25.781 | 256 | 175 | 8 | 1 | 248 | 3 | 251 | 1.90e-19 | 85.1 |
| MS.gene54620.t1 | MTR_5g011210 | 25.847 | 236 | 148 | 6 | 32 | 252 | 40 | 263 | 2.97e-19 | 84.7 |
| MS.gene54620.t1 | MTR_0122s0020 | 32.704 | 159 | 96 | 5 | 34 | 185 | 46 | 200 | 1.27e-18 | 81.6 |
| MS.gene54620.t1 | MTR_7g013150 | 27.799 | 259 | 170 | 10 | 2 | 251 | 3 | 253 | 1.39e-18 | 82.4 |
| MS.gene54620.t1 | MTR_7g011060 | 28.696 | 230 | 150 | 10 | 26 | 252 | 23 | 241 | 2.57e-18 | 81.6 |
| MS.gene54620.t1 | MTR_5g075320 | 27.928 | 222 | 145 | 8 | 33 | 246 | 33 | 247 | 9.97e-18 | 80.1 |
| MS.gene54620.t1 | MTR_3g466760 | 24.900 | 249 | 163 | 9 | 15 | 246 | 15 | 256 | 1.64e-17 | 79.7 |
| MS.gene54620.t1 | MTR_3g466790 | 24.603 | 252 | 166 | 9 | 12 | 246 | 6 | 250 | 2.47e-17 | 79.3 |
| MS.gene54620.t1 | MTR_8g464350 | 26.271 | 236 | 143 | 10 | 32 | 251 | 34 | 254 | 3.78e-17 | 78.6 |
| MS.gene54620.t1 | MTR_4g081950 | 26.446 | 242 | 163 | 8 | 12 | 245 | 44 | 278 | 1.34e-16 | 77.8 |
| MS.gene54620.t1 | MTR_4g099380 | 35.616 | 146 | 74 | 5 | 113 | 252 | 1 | 132 | 1.41e-16 | 77.4 |
| MS.gene54620.t1 | MTR_5g041700 | 26.860 | 242 | 159 | 9 | 15 | 245 | 8 | 242 | 1.54e-16 | 77.0 |
| MS.gene54620.t1 | MTR_1g026020 | 23.377 | 231 | 159 | 9 | 32 | 251 | 32 | 255 | 1.35e-14 | 71.6 |
| MS.gene54620.t1 | MTR_0040s0140 | 27.309 | 249 | 162 | 10 | 12 | 248 | 13 | 254 | 7.30e-14 | 69.7 |
| MS.gene54620.t1 | MTR_5g076950 | 26.809 | 235 | 145 | 11 | 32 | 252 | 44 | 265 | 7.14e-12 | 63.9 |
| MS.gene54620.t1 | MTR_6g012520 | 25.806 | 248 | 166 | 10 | 9 | 248 | 3 | 240 | 7.49e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54620.t1 | AT4G17030 | 62.343 | 239 | 87 | 3 | 12 | 249 | 11 | 247 | 4.12e-112 | 322 |
| MS.gene54620.t1 | AT3G45970 | 39.130 | 207 | 123 | 3 | 48 | 251 | 15 | 221 | 1.68e-49 | 163 |
| MS.gene54620.t1 | AT4G38400 | 40.957 | 188 | 110 | 1 | 65 | 251 | 61 | 248 | 3.03e-47 | 158 |
| MS.gene54620.t1 | AT3G45970 | 38.424 | 203 | 122 | 3 | 52 | 251 | 46 | 248 | 1.01e-46 | 156 |
| MS.gene54620.t1 | AT3G45960 | 37.766 | 188 | 116 | 1 | 65 | 251 | 12 | 199 | 5.14e-46 | 153 |
| MS.gene54620.t1 | AT3G45960 | 36.634 | 202 | 126 | 2 | 52 | 251 | 46 | 247 | 7.71e-46 | 154 |
| MS.gene54620.t1 | AT1G65680 | 32.083 | 240 | 143 | 8 | 24 | 251 | 42 | 273 | 1.80e-32 | 120 |
| MS.gene54620.t1 | AT4G28250 | 30.153 | 262 | 164 | 9 | 6 | 252 | 4 | 261 | 1.88e-28 | 109 |
| MS.gene54620.t1 | AT2G20750 | 29.389 | 262 | 159 | 9 | 13 | 252 | 11 | 268 | 2.51e-26 | 103 |
| MS.gene54620.t1 | AT4G28250 | 29.008 | 262 | 161 | 10 | 6 | 252 | 4 | 255 | 1.60e-23 | 95.9 |
| MS.gene54620.t1 | AT2G40610 | 29.528 | 254 | 164 | 9 | 1 | 245 | 1 | 248 | 4.02e-23 | 94.7 |
| MS.gene54620.t1 | AT5G05290 | 29.279 | 222 | 143 | 7 | 33 | 246 | 36 | 251 | 1.05e-22 | 94.0 |
| MS.gene54620.t1 | AT3G60570 | 28.800 | 250 | 153 | 10 | 15 | 251 | 20 | 257 | 1.68e-21 | 90.9 |
| MS.gene54620.t1 | AT5G39290 | 29.915 | 234 | 135 | 11 | 32 | 251 | 61 | 279 | 3.78e-21 | 90.1 |
| MS.gene54620.t1 | AT5G39310 | 29.515 | 227 | 144 | 9 | 33 | 251 | 94 | 312 | 1.27e-20 | 89.4 |
| MS.gene54620.t1 | AT5G39270 | 29.915 | 234 | 135 | 11 | 32 | 251 | 61 | 279 | 4.79e-20 | 87.0 |
| MS.gene54620.t1 | AT2G45110 | 30.702 | 228 | 140 | 8 | 35 | 251 | 39 | 259 | 1.52e-19 | 85.5 |
| MS.gene54620.t1 | AT4G01630 | 23.282 | 262 | 182 | 8 | 2 | 251 | 1 | 255 | 1.69e-19 | 85.1 |
| MS.gene54620.t1 | AT3G60570 | 30.415 | 217 | 126 | 10 | 48 | 251 | 5 | 209 | 4.88e-19 | 83.2 |
| MS.gene54620.t1 | AT2G20750 | 31.122 | 196 | 112 | 7 | 13 | 187 | 11 | 204 | 1.40e-18 | 82.0 |
| MS.gene54620.t1 | AT5G56320 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 2.02e-18 | 82.4 |
| MS.gene54620.t1 | AT5G56320 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 2.02e-18 | 82.4 |
| MS.gene54620.t1 | AT5G39280 | 29.204 | 226 | 147 | 9 | 32 | 251 | 57 | 275 | 4.15e-18 | 81.6 |
| MS.gene54620.t1 | AT5G56320 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 5.30e-18 | 82.0 |
| MS.gene54620.t1 | AT5G39300 | 29.204 | 226 | 147 | 9 | 32 | 251 | 58 | 276 | 7.79e-18 | 80.9 |
| MS.gene54620.t1 | AT2G03090 | 25.911 | 247 | 168 | 8 | 10 | 248 | 11 | 250 | 1.11e-17 | 80.1 |
| MS.gene54620.t1 | AT1G65681 | 27.014 | 211 | 142 | 6 | 48 | 251 | 17 | 222 | 1.12e-17 | 79.7 |
| MS.gene54620.t1 | AT4G28250 | 30.457 | 197 | 115 | 7 | 6 | 188 | 4 | 192 | 1.33e-16 | 76.3 |
| MS.gene54620.t1 | AT3G15370 | 28.077 | 260 | 144 | 12 | 12 | 248 | 8 | 247 | 2.51e-16 | 76.6 |
| MS.gene54620.t1 | AT4G28250 | 30.612 | 196 | 114 | 7 | 6 | 187 | 4 | 191 | 3.10e-16 | 75.5 |
| MS.gene54620.t1 | AT5G02260 | 26.522 | 230 | 152 | 9 | 29 | 248 | 32 | 254 | 1.00e-15 | 74.7 |
| MS.gene54620.t1 | AT1G12560 | 23.246 | 228 | 161 | 6 | 32 | 251 | 40 | 261 | 5.94e-15 | 72.8 |
| MS.gene54620.t1 | AT2G39700 | 24.554 | 224 | 152 | 8 | 32 | 245 | 34 | 250 | 8.22e-15 | 72.4 |
| MS.gene54620.t1 | AT3G29030 | 27.807 | 187 | 127 | 6 | 29 | 213 | 38 | 218 | 1.14e-13 | 68.9 |
| MS.gene54620.t1 | AT2G37640 | 25.551 | 227 | 152 | 8 | 32 | 248 | 39 | 258 | 1.42e-13 | 68.9 |
| MS.gene54620.t1 | AT1G20190 | 24.569 | 232 | 153 | 10 | 33 | 251 | 30 | 252 | 5.31e-12 | 64.3 |
| MS.gene54620.t1 | AT4G38210 | 27.451 | 255 | 154 | 13 | 13 | 248 | 10 | 252 | 4.22e-11 | 62.0 |
| MS.gene54620.t1 | AT3G15370 | 26.364 | 220 | 125 | 10 | 48 | 248 | 76 | 277 | 7.50e-11 | 61.2 |
Find 65 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTTGGTGCTTAAAATT+AGG | 0.152890 | 5.3:+6608483 | None:intergenic |
| TCCCCGTGGCTATTCAAATT+TGG | 0.158342 | 5.3:-6607579 | MS.gene54620:CDS |
| TGGCTATAATATCTTGTTTA+AGG | 0.174105 | 5.3:-6607474 | MS.gene54620:CDS |
| TGCTCTAGAGCAACCTATTA+TGG | 0.246885 | 5.3:-6608402 | MS.gene54620:CDS |
| CTTGGATTTGCATAACAATC+TGG | 0.272291 | 5.3:+6608375 | None:intergenic |
| ACAATCTGGGCTACCATAAT+AGG | 0.288543 | 5.3:+6608389 | None:intergenic |
| GCTTGTGGCTATGGTGATTA+TGG | 0.309081 | 5.3:-6607967 | MS.gene54620:CDS |
| TACGCATTGGCCTCCATTCT+TGG | 0.310288 | 5.3:+6607264 | None:intergenic |
| ATCTCTAGTGATTGGGAAGC+TGG | 0.319429 | 5.3:-6607131 | MS.gene54620:CDS |
| TGACACAAACAAAACCAATT+TGG | 0.321541 | 5.3:+6608469 | None:intergenic |
| GTGGTAGTGCTGGGCTGTAT+TGG | 0.321854 | 5.3:-6607172 | MS.gene54620:CDS |
| CCATTCTCGTCACACAATTC+TGG | 0.326522 | 5.3:+6607659 | None:intergenic |
| TGGTAGTGCTGGGCTGTATT+GGG | 0.329472 | 5.3:-6607171 | MS.gene54620:CDS |
| CCCCGTGGCTATTCAAATTT+GGG | 0.333249 | 5.3:-6607578 | MS.gene54620:CDS |
| AGGCCAATGCGTAGGGCATT+TGG | 0.356145 | 5.3:-6607254 | MS.gene54620:CDS |
| CTGATTTCGGTGTGGGAGAT+AGG | 0.388099 | 5.3:-6607619 | MS.gene54620:CDS |
| AGACTGTTATCTCTAGTGAT+TGG | 0.400920 | 5.3:-6607139 | MS.gene54620:CDS |
| GCCATTCTTATTCTCTATGT+TGG | 0.402224 | 5.3:-6607419 | MS.gene54620:CDS |
| CTCCAAGTGAGTGGTAGTGC+TGG | 0.409157 | 5.3:-6607182 | MS.gene54620:CDS |
| TTAGAGGGAGCTTGTGGCTA+TGG | 0.433052 | 5.3:-6607976 | MS.gene54620:intron |
| GACTGTTATCTCTAGTGATT+GGG | 0.436426 | 5.3:-6607138 | MS.gene54620:CDS |
| AACTTGATCTCACCTCTTGG+AGG | 0.448456 | 5.3:+6607209 | None:intergenic |
| AACAGGAAGATTGCCAAGAA+TGG | 0.466268 | 5.3:-6607277 | MS.gene54620:intron |
| ATTCTTATTCTCTATGTTGG+TGG | 0.472042 | 5.3:-6607416 | MS.gene54620:CDS |
| TCTCTAGTGATTGGGAAGCT+GGG | 0.472781 | 5.3:-6607130 | MS.gene54620:CDS |
| TCGCAGGCGTTTCTTCGCTA+TGG | 0.490569 | 5.3:-6607921 | MS.gene54620:CDS |
| TCGCTATGGAAGAATGGATC+TGG | 0.490619 | 5.3:-6607907 | MS.gene54620:CDS |
| CTCAACTTGATCTCACCTCT+TGG | 0.495730 | 5.3:+6607206 | None:intergenic |
| TTGGATTTGCATAACAATCT+GGG | 0.496289 | 5.3:+6608376 | None:intergenic |
| CCAGAATTGTGTGACGAGAA+TGG | 0.501363 | 5.3:-6607659 | MS.gene54620:CDS |
| TATGTGGTGGTGACTGATTT+CGG | 0.505870 | 5.3:-6607632 | MS.gene54620:CDS |
| ATCACTAGAGATAACAGTCT+TGG | 0.514327 | 5.3:+6607142 | None:intergenic |
| CTCTAGTGATTGGGAAGCTG+GGG | 0.520412 | 5.3:-6607129 | MS.gene54620:CDS |
| TTATAGCCATTGTATTTGCA+AGG | 0.532628 | 5.3:+6607488 | None:intergenic |
| GCCCAGCACTACCACTCACT+TGG | 0.534848 | 5.3:+6607180 | None:intergenic |
| ACTTGATCTCACCTCTTGGA+GGG | 0.535508 | 5.3:+6607210 | None:intergenic |
| ACCAACATAGAGAATAAGAA+TGG | 0.537864 | 5.3:+6607418 | None:intergenic |
| GCCCAAATTTGAATAGCCAC+GGG | 0.544992 | 5.3:+6607577 | None:intergenic |
| TGCCCAAATTTGAATAGCCA+CGG | 0.546821 | 5.3:+6607576 | None:intergenic |
| GTTCCAAATGCCCTACGCAT+TGG | 0.550110 | 5.3:+6607251 | None:intergenic |
| GTAAATGATGGCAATGTCGC+AGG | 0.552094 | 5.3:-6607937 | MS.gene54620:CDS |
| TCCAAGTGAGTGGTAGTGCT+GGG | 0.552324 | 5.3:-6607181 | MS.gene54620:CDS |
| GTTTCTTCGCTATGGAAGAA+TGG | 0.552967 | 5.3:-6607913 | MS.gene54620:CDS |
| AAGAATGGAGGCCAATGCGT+AGG | 0.554025 | 5.3:-6607262 | MS.gene54620:CDS |
| TGGAAGAATGGATCTGGTTG+TGG | 0.555017 | 5.3:-6607901 | MS.gene54620:CDS |
| TCTTGAGAGGAACACAAGAC+AGG | 0.557963 | 5.3:+6608435 | None:intergenic |
| TATAGCCATTGTATTTGCAA+GGG | 0.561411 | 5.3:+6607489 | None:intergenic |
| GTGGTGACTGATTTCGGTGT+GGG | 0.565321 | 5.3:-6607626 | MS.gene54620:CDS |
| AACTGCTGTTCAGTTGTGGC+AGG | 0.569473 | 5.3:-6607381 | MS.gene54620:intron |
| ATAAGAATGGCTAAGTAGTG+AGG | 0.575706 | 5.3:+6607431 | None:intergenic |
| AGAATGGAGGCCAATGCGTA+GGG | 0.588746 | 5.3:-6607261 | MS.gene54620:CDS |
| TATGGACAGACAGTAAATGA+TGG | 0.603311 | 5.3:-6607949 | MS.gene54620:CDS |
| TAGTGCTGGGCTGTATTGGG+TGG | 0.610771 | 5.3:-6607168 | MS.gene54620:CDS |
| AGGAAGATTGCCAAGAATGG+AGG | 0.614849 | 5.3:-6607274 | MS.gene54620:CDS |
| TGACGAGAATGGAGCATATG+TGG | 0.619740 | 5.3:-6607648 | MS.gene54620:CDS |
| AGAATCCCTTGCAAATACAA+TGG | 0.620915 | 5.3:-6607494 | MS.gene54620:CDS |
| GCAAACAAAAGAGTCTTGAG+AGG | 0.624968 | 5.3:+6608422 | None:intergenic |
| ATGTAACTGCTGTTCAGTTG+TGG | 0.651186 | 5.3:-6607385 | MS.gene54620:CDS |
| AAGTTGAGGCTCCAAGTGAG+TGG | 0.655665 | 5.3:-6607191 | MS.gene54620:CDS |
| GGTGGTGACTGATTTCGGTG+TGG | 0.680075 | 5.3:-6607627 | MS.gene54620:CDS |
| GACTTCATCATGAGTCCCCG+TGG | 0.688519 | 5.3:-6607593 | MS.gene54620:CDS |
| GATGCAGAGAACCCTCCAAG+AGG | 0.690257 | 5.3:-6607221 | MS.gene54620:CDS |
| CCCAAATTTGAATAGCCACG+GGG | 0.693150 | 5.3:+6607578 | None:intergenic |
| CAAGAGGTGAGATCAAGTTG+AGG | 0.697595 | 5.3:-6607205 | MS.gene54620:CDS |
| CGAGAATGGAGCATATGTGG+TGG | 0.757236 | 5.3:-6607645 | MS.gene54620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAATGATGAAAT+AGG | - | chr5.3:6607893-6607912 | MS.gene54620:CDS | 10.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | + | chr5.3:6608238-6608257 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTTATCTCAAAT+TGG | - | chr5.3:6607390-6607409 | MS.gene54620:CDS | 15.0% |
| !! | ACACATTTATAAAAATTGAC+AGG | + | chr5.3:6607430-6607449 | None:intergenic | 20.0% |
| !! | ACATTTCTTGAAATTGAATA+GGG | - | chr5.3:6608269-6608288 | MS.gene54620:intron | 20.0% |
| !! | CACATTTATAAAAATTGACA+GGG | + | chr5.3:6607429-6607448 | None:intergenic | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+AGG | - | chr5.3:6608268-6608287 | MS.gene54620:intron | 20.0% |
| !!! | AGTATACAACATTTTTTTTC+CGG | - | chr5.3:6607521-6607540 | MS.gene54620:CDS | 20.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | - | chr5.3:6607898-6607917 | MS.gene54620:CDS | 25.0% |
| ! | CATAAAATACATAATCTGAG+TGG | - | chr5.3:6607577-6607596 | MS.gene54620:CDS | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | - | chr5.3:6608020-6608039 | MS.gene54620:intron | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | + | chr5.3:6607861-6607880 | None:intergenic | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | - | chr5.3:6608055-6608074 | MS.gene54620:intron | 25.0% |
| !! | CATTGAATCGGTTTATAAAT+CGG | + | chr5.3:6607497-6607516 | None:intergenic | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | - | chr5.3:6608050-6608069 | MS.gene54620:intron | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | - | chr5.3:6608115-6608134 | MS.gene54620:intron | 25.0% |
| ACCAACATAGAGAATAAGAA+TGG | + | chr5.3:6608174-6608193 | None:intergenic | 30.0% | |
| ATTAGTAGAAGACACTTACT+TGG | + | chr5.3:6607235-6607254 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | - | chr5.3:6608173-6608192 | MS.gene54620:intron | 30.0% | |
| TATAGCCATTGTATTTGCAA+GGG | + | chr5.3:6608103-6608122 | None:intergenic | 30.0% | |
| TGAATAGGGTTTACTTGAAA+TGG | - | chr5.3:6608283-6608302 | MS.gene54620:intron | 30.0% | |
| TGACACAAACAAAACCAATT+TGG | + | chr5.3:6607123-6607142 | None:intergenic | 30.0% | |
| TGTATACTGTCTCATTGAAT+CGG | + | chr5.3:6607509-6607528 | None:intergenic | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | + | chr5.3:6608104-6608123 | None:intergenic | 30.0% | |
| TTGGATTTGCATAACAATCT+GGG | + | chr5.3:6607216-6607235 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | - | chr5.3:6608058-6608077 | MS.gene54620:intron | 30.0% |
| ! | CCTAATTTTAAGCACCAAAT+TGG | - | chr5.3:6607106-6607125 | MS.gene54620:CDS | 30.0% |
| !! | CCAATTTGGTGCTTAAAATT+AGG | + | chr5.3:6607109-6607128 | None:intergenic | 30.0% |
| AAAAATTGACAGGGTTGAGT+AGG | + | chr5.3:6607420-6607439 | None:intergenic | 35.0% | |
| ACCTAGACATTGCATTACTT+TGG | - | chr5.3:6607547-6607566 | MS.gene54620:CDS | 35.0% | |
| AGAATCCCTTGCAAATACAA+TGG | - | chr5.3:6608095-6608114 | MS.gene54620:intron | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | - | chr5.3:6608450-6608469 | MS.gene54620:CDS | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | + | chr5.3:6608161-6608180 | None:intergenic | 35.0% | |
| ATCACTAGAGATAACAGTCT+TGG | + | chr5.3:6608450-6608469 | None:intergenic | 35.0% | |
| CTTGGATTTGCATAACAATC+TGG | + | chr5.3:6607217-6607236 | None:intergenic | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | - | chr5.3:6608451-6608470 | MS.gene54620:CDS | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | - | chr5.3:6608170-6608189 | MS.gene54620:intron | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | - | chr5.3:6608289-6608308 | MS.gene54620:intron | 35.0% | |
| TATGGACAGACAGTAAATGA+TGG | - | chr5.3:6607640-6607659 | MS.gene54620:CDS | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | - | chr5.3:6608295-6608314 | MS.gene54620:intron | 35.0% |
| !! | GGCTATTAACCTGTTTTAGA+GGG | - | chr5.3:6607598-6607617 | MS.gene54620:CDS | 35.0% |
| !! | TGGCTATTAACCTGTTTTAG+AGG | - | chr5.3:6607597-6607616 | MS.gene54620:CDS | 35.0% |
| !!! | GAGTGTTGTGCACATTTTTT+AGG | - | chr5.3:6607453-6607472 | MS.gene54620:CDS | 35.0% |
| AACAGGAAGATTGCCAAGAA+TGG | - | chr5.3:6608312-6608331 | MS.gene54620:intron | 40.0% | |
| AATGCAATGTCTAGGTTCAC+CGG | + | chr5.3:6607543-6607562 | None:intergenic | 40.0% | |
| ACAATCTGGGCTACCATAAT+AGG | + | chr5.3:6607203-6607222 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | - | chr5.3:6608204-6608223 | MS.gene54620:intron | 40.0% | |
| GCAAACAAAAGAGTCTTGAG+AGG | + | chr5.3:6607170-6607189 | None:intergenic | 40.0% | |
| GCCAAAGTAATGCAATGTCT+AGG | + | chr5.3:6607551-6607570 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | - | chr5.3:6607676-6607695 | MS.gene54620:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | + | chr5.3:6608016-6608035 | None:intergenic | 40.0% | |
| ! | TATGTGGTGGTGACTGATTT+CGG | - | chr5.3:6607957-6607976 | MS.gene54620:CDS | 40.0% |
| !! | TGCTCTAGAGCAACCTATTA+TGG | - | chr5.3:6607187-6607206 | MS.gene54620:CDS | 40.0% |
| AACTTGATCTCACCTCTTGG+AGG | + | chr5.3:6608383-6608402 | None:intergenic | 45.0% | |
| ACTTGATCTCACCTCTTGGA+GGG | + | chr5.3:6608382-6608401 | None:intergenic | 45.0% | |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr5.3:6608315-6608334 | MS.gene54620:intron | 45.0% | |
| ATCTCTAGTGATTGGGAAGC+TGG | - | chr5.3:6608458-6608477 | MS.gene54620:CDS | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | - | chr5.3:6607930-6607949 | MS.gene54620:CDS | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | + | chr5.3:6607933-6607952 | None:intergenic | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | + | chr5.3:6608014-6608033 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | - | chr5.3:6608011-6608030 | MS.gene54620:intron | 45.0% | |
| CTCAACTTGATCTCACCTCT+TGG | + | chr5.3:6608386-6608405 | None:intergenic | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | + | chr5.3:6608015-6608034 | None:intergenic | 45.0% | |
| GCTTGTGGCTATGGTGATTA+TGG | - | chr5.3:6607622-6607641 | MS.gene54620:CDS | 45.0% | |
| GTAAATGATGGCAATGTCGC+AGG | - | chr5.3:6607652-6607671 | MS.gene54620:CDS | 45.0% | |
| TCCCCGTGGCTATTCAAATT+TGG | - | chr5.3:6608010-6608029 | MS.gene54620:intron | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | - | chr5.3:6607682-6607701 | MS.gene54620:intron | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | - | chr5.3:6608459-6608478 | MS.gene54620:CDS | 45.0% | |
| TCTTGAGAGGAACACAAGAC+AGG | + | chr5.3:6607157-6607176 | None:intergenic | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | - | chr5.3:6607941-6607960 | MS.gene54620:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | - | chr5.3:6607688-6607707 | MS.gene54620:intron | 45.0% | |
| ! | CAAGAGGTGAGATCAAGTTG+AGG | - | chr5.3:6608384-6608403 | MS.gene54620:CDS | 45.0% |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | + | chr5.3:6608142-6608161 | None:intergenic | 45.0% |
| !! | TTAAGTAATATATATTATAA+AGG | - | chr5.3:6607825-6607844 | MS.gene54620:intron | 5.0% |
| AACTGCTGTTCAGTTGTGGC+AGG | - | chr5.3:6608208-6608227 | MS.gene54620:intron | 50.0% | |
| AAGAATGGAGGCCAATGCGT+AGG | - | chr5.3:6608327-6608346 | MS.gene54620:intron | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | - | chr5.3:6608398-6608417 | MS.gene54620:CDS | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | - | chr5.3:6608328-6608347 | MS.gene54620:intron | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | - | chr5.3:6607944-6607963 | MS.gene54620:CDS | 50.0% | |
| CTCTAGTGATTGGGAAGCTG+GGG | - | chr5.3:6608460-6608479 | MS.gene54620:CDS | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | + | chr5.3:6608341-6608360 | None:intergenic | 50.0% | |
| TTAGAGGGAGCTTGTGGCTA+TGG | - | chr5.3:6607613-6607632 | MS.gene54620:CDS | 50.0% | |
| ! | CTGATTTCGGTGTGGGAGAT+AGG | - | chr5.3:6607970-6607989 | MS.gene54620:CDS | 50.0% |
| ! | GTGGTGACTGATTTCGGTGT+GGG | - | chr5.3:6607963-6607982 | MS.gene54620:CDS | 50.0% |
| ! | TACGCATTGGCCTCCATTCT+TGG | + | chr5.3:6608328-6608347 | None:intergenic | 50.0% |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | - | chr5.3:6608408-6608427 | MS.gene54620:CDS | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | - | chr5.3:6608418-6608437 | MS.gene54620:CDS | 50.0% |
| !! | CCACAAGCTCCCTCTAAAAC+AGG | + | chr5.3:6607610-6607629 | None:intergenic | 50.0% |
| !!! | CCTGTTTTAGAGGGAGCTTG+TGG | - | chr5.3:6607607-6607626 | MS.gene54620:CDS | 50.0% |
| GACTTCATCATGAGTCCCCG+TGG | - | chr5.3:6607996-6608015 | MS.gene54620:intron | 55.0% | |
| GATGCAGAGAACCCTCCAAG+AGG | - | chr5.3:6608368-6608387 | MS.gene54620:intron | 55.0% | |
| TCGCAGGCGTTTCTTCGCTA+TGG | - | chr5.3:6607668-6607687 | MS.gene54620:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | - | chr5.3:6608335-6608354 | MS.gene54620:intron | 55.0% |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | - | chr5.3:6608407-6608426 | MS.gene54620:CDS | 55.0% |
| ! | GGTGGTGACTGATTTCGGTG+TGG | - | chr5.3:6607962-6607981 | MS.gene54620:CDS | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | - | chr5.3:6608417-6608436 | MS.gene54620:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | - | chr5.3:6608421-6608440 | MS.gene54620:CDS | 55.0% |
| GCCCAGCACTACCACTCACT+TGG | + | chr5.3:6608412-6608431 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6607097 | 6608514 | 6607097 | ID=MS.gene54620 |
| chr5.3 | mRNA | 6607097 | 6608514 | 6607097 | ID=MS.gene54620.t1;Parent=MS.gene54620 |
| chr5.3 | exon | 6608376 | 6608514 | 6608376 | ID=MS.gene54620.t1.exon1;Parent=MS.gene54620.t1 |
| chr5.3 | CDS | 6608376 | 6608514 | 6608376 | ID=cds.MS.gene54620.t1;Parent=MS.gene54620.t1 |
| chr5.3 | exon | 6607888 | 6607994 | 6607888 | ID=MS.gene54620.t1.exon2;Parent=MS.gene54620.t1 |
| chr5.3 | CDS | 6607888 | 6607994 | 6607888 | ID=cds.MS.gene54620.t1;Parent=MS.gene54620.t1 |
| chr5.3 | exon | 6607382 | 6607696 | 6607382 | ID=MS.gene54620.t1.exon3;Parent=MS.gene54620.t1 |
| chr5.3 | CDS | 6607382 | 6607696 | 6607382 | ID=cds.MS.gene54620.t1;Parent=MS.gene54620.t1 |
| chr5.3 | exon | 6607097 | 6607294 | 6607097 | ID=MS.gene54620.t1.exon4;Parent=MS.gene54620.t1 |
| chr5.3 | CDS | 6607097 | 6607294 | 6607097 | ID=cds.MS.gene54620.t1;Parent=MS.gene54620.t1 |
| Gene Sequence |
| Protein sequence |
