Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54738.t1 | XP_003607050.1 | 97.8 | 279 | 6 | 0 | 1 | 279 | 93 | 371 | 1.10E-162 | 582.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54738.t1 | Q9LHD2 | 68.0 | 269 | 80 | 3 | 1 | 268 | 86 | 349 | 1.7e-111 | 403.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54738.t1 | G7KJH6 | 97.8 | 279 | 6 | 0 | 1 | 279 | 93 | 371 | 8.0e-163 | 582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene54738 | 0.904727 | 9.07E-80 | -1.69E-46 |
| MS.gene051226 | MS.gene54738 | 0.860375 | 2.16E-63 | -1.69E-46 |
| MS.gene051837 | MS.gene54738 | 0.855246 | 7.18E-62 | -1.69E-46 |
| MS.gene052296 | MS.gene54738 | 0.823367 | 1.44E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene54738 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene54738 | 0.80142 | 9.08E-49 | -1.69E-46 |
| MS.gene057093 | MS.gene54738 | 0.859185 | 4.93E-63 | -1.69E-46 |
| MS.gene057167 | MS.gene54738 | 0.820936 | 5.27E-53 | -1.69E-46 |
| MS.gene057432 | MS.gene54738 | 0.810685 | 1.02E-50 | -1.69E-46 |
| MS.gene06023 | MS.gene54738 | 0.804332 | 2.27E-49 | -1.69E-46 |
| MS.gene060964 | MS.gene54738 | 0.807392 | 5.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54738.t1 | MTR_6g008900 | 97.849 | 279 | 6 | 0 | 1 | 279 | 93 | 371 | 0.0 | 574 |
| MS.gene54738.t1 | MTR_4g071620 | 97.849 | 279 | 6 | 0 | 1 | 279 | 93 | 371 | 0.0 | 574 |
| MS.gene54738.t1 | MTR_5g036580 | 68.148 | 270 | 84 | 1 | 1 | 270 | 94 | 361 | 4.15e-139 | 397 |
| MS.gene54738.t1 | MTR_7g109210 | 65.672 | 268 | 83 | 3 | 1 | 268 | 93 | 351 | 2.07e-132 | 379 |
| MS.gene54738.t1 | MTR_3g092310 | 61.049 | 267 | 99 | 3 | 2 | 268 | 71 | 332 | 2.04e-122 | 353 |
| MS.gene54738.t1 | MTR_3g111600 | 61.423 | 267 | 97 | 2 | 1 | 267 | 12 | 272 | 4.88e-121 | 347 |
| MS.gene54738.t1 | MTR_7g094230 | 60.219 | 274 | 102 | 3 | 1 | 274 | 83 | 349 | 1.38e-120 | 349 |
| MS.gene54738.t1 | MTR_8g078240 | 59.176 | 267 | 105 | 1 | 1 | 267 | 74 | 336 | 1.03e-119 | 346 |
| MS.gene54738.t1 | MTR_1g021855 | 61.940 | 268 | 95 | 3 | 1 | 267 | 97 | 358 | 2.17e-119 | 346 |
| MS.gene54738.t1 | MTR_5g019220 | 59.176 | 267 | 107 | 1 | 1 | 267 | 94 | 358 | 8.04e-119 | 345 |
| MS.gene54738.t1 | MTR_4g118030 | 58.364 | 269 | 104 | 4 | 1 | 268 | 77 | 338 | 1.60e-115 | 336 |
| MS.gene54738.t1 | MTR_1g089820 | 60.432 | 278 | 100 | 5 | 1 | 278 | 86 | 353 | 1.10e-113 | 332 |
| MS.gene54738.t1 | MTR_2g461670 | 34.066 | 182 | 112 | 5 | 73 | 254 | 395 | 568 | 2.74e-24 | 102 |
| MS.gene54738.t1 | MTR_4g109890 | 32.836 | 201 | 123 | 7 | 73 | 272 | 340 | 529 | 9.41e-23 | 97.8 |
| MS.gene54738.t1 | MTR_2g015550 | 31.401 | 207 | 124 | 7 | 73 | 279 | 339 | 527 | 3.20e-21 | 93.2 |
| MS.gene54738.t1 | MTR_8g092000 | 32.000 | 175 | 111 | 5 | 73 | 247 | 384 | 550 | 1.07e-20 | 92.0 |
| MS.gene54738.t1 | MTR_7g055600 | 29.592 | 196 | 125 | 6 | 57 | 247 | 217 | 404 | 2.83e-20 | 90.1 |
| MS.gene54738.t1 | MTR_7g057530 | 29.592 | 196 | 125 | 6 | 57 | 247 | 217 | 404 | 2.83e-20 | 90.1 |
| MS.gene54738.t1 | MTR_7g075840 | 28.431 | 204 | 129 | 6 | 73 | 276 | 468 | 654 | 3.63e-19 | 87.4 |
| MS.gene54738.t1 | MTR_4g133570 | 30.000 | 200 | 122 | 8 | 73 | 265 | 261 | 449 | 5.34e-19 | 86.7 |
| MS.gene54738.t1 | MTR_8g033360 | 31.551 | 187 | 118 | 4 | 44 | 225 | 403 | 584 | 5.37e-19 | 87.0 |
| MS.gene54738.t1 | MTR_6g016380 | 30.857 | 175 | 113 | 5 | 73 | 247 | 359 | 525 | 7.18e-19 | 86.7 |
| MS.gene54738.t1 | MTR_3g107930 | 28.302 | 212 | 139 | 5 | 44 | 250 | 358 | 561 | 1.54e-18 | 85.5 |
| MS.gene54738.t1 | MTR_7g012370 | 28.729 | 181 | 116 | 6 | 73 | 247 | 334 | 507 | 1.80e-18 | 85.5 |
| MS.gene54738.t1 | MTR_3g107930 | 28.302 | 212 | 139 | 5 | 44 | 250 | 435 | 638 | 1.95e-18 | 85.5 |
| MS.gene54738.t1 | MTR_2g027740 | 30.337 | 178 | 110 | 5 | 73 | 247 | 471 | 637 | 1.80e-17 | 82.4 |
| MS.gene54738.t1 | MTR_2g082650 | 28.643 | 199 | 126 | 8 | 73 | 265 | 209 | 397 | 2.88e-17 | 81.3 |
| MS.gene54738.t1 | MTR_2g082650 | 28.643 | 199 | 126 | 8 | 73 | 265 | 338 | 526 | 5.32e-17 | 80.9 |
| MS.gene54738.t1 | MTR_3g452360 | 28.272 | 191 | 125 | 6 | 64 | 247 | 166 | 351 | 9.62e-15 | 73.9 |
| MS.gene54738.t1 | MTR_3g452360 | 28.272 | 191 | 125 | 6 | 64 | 247 | 315 | 500 | 1.89e-14 | 73.6 |
| MS.gene54738.t1 | MTR_7g096160 | 25.714 | 175 | 125 | 3 | 73 | 247 | 455 | 624 | 5.00e-14 | 72.4 |
| MS.gene54738.t1 | MTR_6g013840 | 28.859 | 149 | 98 | 4 | 103 | 247 | 358 | 502 | 9.18e-13 | 68.6 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 403 | 550 | 4.94e-11 | 63.2 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 443 | 590 | 5.09e-11 | 63.2 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 463 | 610 | 5.60e-11 | 63.2 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 463 | 610 | 5.71e-11 | 63.2 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 500 | 647 | 5.83e-11 | 63.2 |
| MS.gene54738.t1 | MTR_7g074680 | 31.325 | 166 | 93 | 9 | 103 | 265 | 483 | 630 | 5.99e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54738.t1 | AT3G28340 | 66.909 | 275 | 85 | 3 | 1 | 274 | 86 | 355 | 6.62e-142 | 404 |
| MS.gene54738.t1 | AT1G70090 | 67.910 | 268 | 84 | 1 | 1 | 268 | 97 | 362 | 3.11e-139 | 398 |
| MS.gene54738.t1 | AT1G70090 | 67.910 | 268 | 84 | 1 | 1 | 268 | 97 | 362 | 3.11e-139 | 398 |
| MS.gene54738.t1 | AT1G24170 | 67.164 | 268 | 86 | 1 | 1 | 268 | 100 | 365 | 6.05e-137 | 392 |
| MS.gene54738.t1 | AT3G62660 | 67.164 | 268 | 79 | 3 | 1 | 268 | 98 | 356 | 2.70e-132 | 379 |
| MS.gene54738.t1 | AT4G02130 | 66.418 | 268 | 84 | 3 | 1 | 268 | 81 | 342 | 4.07e-131 | 375 |
| MS.gene54738.t1 | AT4G02130 | 66.418 | 268 | 84 | 3 | 1 | 268 | 81 | 342 | 4.07e-131 | 375 |
| MS.gene54738.t1 | AT4G02130 | 66.418 | 268 | 84 | 3 | 1 | 268 | 81 | 342 | 4.07e-131 | 375 |
| MS.gene54738.t1 | AT1G02720 | 63.197 | 269 | 91 | 5 | 1 | 268 | 96 | 357 | 1.38e-123 | 357 |
| MS.gene54738.t1 | AT1G02720 | 63.197 | 269 | 91 | 5 | 1 | 268 | 96 | 357 | 1.38e-123 | 357 |
| MS.gene54738.t1 | AT3G06260 | 61.940 | 268 | 96 | 5 | 1 | 268 | 81 | 342 | 5.44e-122 | 352 |
| MS.gene54738.t1 | AT3G50760 | 59.259 | 270 | 101 | 3 | 1 | 267 | 68 | 331 | 1.75e-116 | 338 |
| MS.gene54738.t1 | AT1G13250 | 61.194 | 268 | 98 | 3 | 1 | 268 | 75 | 336 | 3.56e-112 | 327 |
| MS.gene54738.t1 | AT1G19300 | 62.547 | 267 | 96 | 2 | 1 | 267 | 80 | 342 | 9.11e-112 | 327 |
| MS.gene54738.t1 | AT1G18580 | 29.078 | 282 | 157 | 11 | 4 | 254 | 246 | 515 | 2.31e-25 | 105 |
| MS.gene54738.t1 | AT3G25140 | 30.435 | 207 | 125 | 7 | 48 | 247 | 335 | 529 | 1.04e-21 | 94.7 |
| MS.gene54738.t1 | AT4G38270 | 31.429 | 175 | 112 | 4 | 73 | 247 | 480 | 646 | 1.53e-20 | 91.7 |
| MS.gene54738.t1 | AT4G38270 | 31.429 | 175 | 112 | 4 | 73 | 247 | 484 | 650 | 1.65e-20 | 91.7 |
| MS.gene54738.t1 | AT3G61130 | 29.487 | 234 | 143 | 8 | 28 | 250 | 424 | 646 | 5.49e-20 | 90.1 |
| MS.gene54738.t1 | AT5G47780 | 32.000 | 175 | 111 | 5 | 73 | 247 | 420 | 586 | 6.66e-20 | 89.7 |
| MS.gene54738.t1 | AT3G01040 | 27.513 | 189 | 126 | 6 | 73 | 255 | 329 | 512 | 4.37e-19 | 87.0 |
| MS.gene54738.t1 | AT3G01040 | 27.513 | 189 | 126 | 6 | 73 | 255 | 329 | 512 | 4.37e-19 | 87.0 |
| MS.gene54738.t1 | AT3G01040 | 27.513 | 189 | 126 | 6 | 73 | 255 | 296 | 479 | 4.38e-19 | 87.0 |
| MS.gene54738.t1 | AT3G58790 | 29.050 | 179 | 119 | 5 | 73 | 247 | 204 | 378 | 2.62e-18 | 84.3 |
| MS.gene54738.t1 | AT3G58790 | 29.442 | 197 | 128 | 7 | 73 | 265 | 336 | 525 | 3.76e-18 | 84.3 |
| MS.gene54738.t1 | AT5G15470 | 27.749 | 191 | 123 | 7 | 73 | 255 | 329 | 512 | 8.75e-18 | 83.2 |
| MS.gene54738.t1 | AT5G54690 | 27.374 | 179 | 121 | 5 | 73 | 247 | 331 | 504 | 1.47e-17 | 82.8 |
| MS.gene54738.t1 | AT3G02350 | 31.579 | 209 | 129 | 6 | 44 | 247 | 332 | 531 | 2.11e-17 | 82.4 |
| MS.gene54738.t1 | AT2G30575 | 30.769 | 195 | 122 | 6 | 55 | 247 | 397 | 580 | 8.11e-17 | 80.5 |
| MS.gene54738.t1 | AT2G46480 | 30.337 | 178 | 116 | 5 | 73 | 250 | 344 | 513 | 1.62e-16 | 79.7 |
| MS.gene54738.t1 | AT2G46480 | 30.337 | 178 | 116 | 5 | 73 | 250 | 357 | 526 | 1.71e-16 | 79.7 |
| MS.gene54738.t1 | AT1G06780 | 29.944 | 177 | 115 | 5 | 73 | 247 | 403 | 572 | 1.35e-15 | 77.0 |
| MS.gene54738.t1 | AT1G06780 | 29.944 | 177 | 115 | 5 | 73 | 247 | 390 | 559 | 1.54e-15 | 76.6 |
| MS.gene54738.t1 | AT2G20810 | 35.393 | 178 | 106 | 5 | 73 | 250 | 342 | 510 | 1.87e-15 | 76.6 |
Find 43 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGATATTCAAGATTTA+TGG | 0.160378 | 6.2:-4476127 | MS.gene54738:CDS |
| TATATGCCTCATGTGGGATA+TGG | 0.303444 | 6.2:-4475627 | MS.gene54738:CDS |
| CTCCAATGTAACAAACTAAC+TGG | 0.371144 | 6.2:+4475729 | None:intergenic |
| TGTTACATTGGAGTGGTAAA+GGG | 0.388590 | 6.2:-4475719 | MS.gene54738:CDS |
| TCAAGTGCTTGTCTTATTGA+AGG | 0.389187 | 6.2:+4476242 | None:intergenic |
| TTGAAGCTATTGAACATAGA+TGG | 0.398424 | 6.2:-4475812 | MS.gene54738:CDS |
| AGAATAAAGATGAGTTTACT+AGG | 0.399390 | 6.2:-4476343 | MS.gene54738:CDS |
| GTGAGAAGGGTTTATAAGCT+TGG | 0.416693 | 6.2:-4475873 | MS.gene54738:CDS |
| TTGTTACATTGGAGTGGTAA+AGG | 0.425011 | 6.2:-4475720 | MS.gene54738:CDS |
| GTCCAGTTAGTTTGTTACAT+TGG | 0.426248 | 6.2:-4475731 | MS.gene54738:CDS |
| GAGTTTACTAGGATTGTTCA+TGG | 0.433334 | 6.2:-4476332 | MS.gene54738:CDS |
| AAATTTGCATGACAATATTC+CGG | 0.448533 | 6.2:+4476068 | None:intergenic |
| ACACAAAGAAGATTGAGAAA+TGG | 0.449104 | 6.2:-4475911 | MS.gene54738:CDS |
| TGGTAATGGATTTGGTGAAA+TGG | 0.449678 | 6.2:-4475947 | MS.gene54738:CDS |
| TTGACCGATTCGAAGGTAAT+CGG | 0.457785 | 6.2:-4476095 | MS.gene54738:CDS |
| CAACACTGGTGTGATGGTAA+TGG | 0.479656 | 6.2:-4475961 | MS.gene54738:CDS |
| TAAACTTTGAATTTCAATGA+AGG | 0.482539 | 6.2:+4476302 | None:intergenic |
| TAACTTCTTGCATAATTCAA+AGG | 0.486802 | 6.2:+4476215 | None:intergenic |
| TGGTGTGATGGTAATGGATT+TGG | 0.491814 | 6.2:-4475955 | MS.gene54738:CDS |
| TGAGGCATATAGAGATCATA+AGG | 0.492254 | 6.2:+4475639 | None:intergenic |
| AGATGGAATCAACATGGTCT+TGG | 0.496429 | 6.2:-4475795 | MS.gene54738:CDS |
| GAAATGGATGGAAATTCAAA+AGG | 0.498984 | 6.2:-4475895 | MS.gene54738:CDS |
| GGAAATTCAAAAGGTGAGAA+GGG | 0.517101 | 6.2:-4475886 | MS.gene54738:CDS |
| GGTTTCGTTGACCGATTCGA+AGG | 0.525208 | 6.2:-4476102 | MS.gene54738:CDS |
| ATTGCATCAAGTCTTCTCCA+TGG | 0.528733 | 6.2:+4475693 | None:intergenic |
| TGGAAATTCAAAAGGTGAGA+AGG | 0.532785 | 6.2:-4475887 | MS.gene54738:CDS |
| AGTTGTAGAAGTTTGCATCC+TGG | 0.544023 | 6.2:-4475753 | MS.gene54738:CDS |
| AAAGAAGATTGAGAAATGGA+TGG | 0.561407 | 6.2:-4475907 | MS.gene54738:CDS |
| TGATCTCTATATGCCTCATG+TGG | 0.564137 | 6.2:-4475634 | MS.gene54738:CDS |
| GTTAGTTTGTTACATTGGAG+TGG | 0.566455 | 6.2:-4475726 | MS.gene54738:CDS |
| TTCGAAGGTAATCGGTGCAC+CGG | 0.567159 | 6.2:-4476087 | MS.gene54738:CDS |
| ATGCCATGTTATTTCAACAC+TGG | 0.573743 | 6.2:-4475975 | MS.gene54738:CDS |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 6.2:-4475792 | MS.gene54738:CDS |
| TGCACCGATTACCTTCGAAT+CGG | 0.583961 | 6.2:+4476091 | None:intergenic |
| TGTAACAAACTAACTGGACC+AGG | 0.606289 | 6.2:+4475735 | None:intergenic |
| TGATATTCAAGATTTATGGA+AGG | 0.616697 | 6.2:-4476123 | MS.gene54738:CDS |
| TTATTTCAACACTGGTGTGA+TGG | 0.626622 | 6.2:-4475967 | MS.gene54738:CDS |
| GAATGTCCATATCCCACATG+AGG | 0.636097 | 6.2:+4475621 | None:intergenic |
| ACACCAGTGTTGAAATAACA+TGG | 0.638418 | 6.2:+4475972 | None:intergenic |
| GATTTGGTGAAATGGAGAGA+AGG | 0.660269 | 6.2:-4475939 | MS.gene54738:CDS |
| GGAGTGGTAAAGGGAAACCA+TGG | 0.670933 | 6.2:-4475710 | MS.gene54738:CDS |
| GATCTCTATATGCCTCATGT+GGG | 0.673689 | 6.2:-4475633 | MS.gene54738:CDS |
| GAACATAGATGGAATCAACA+TGG | 0.707717 | 6.2:-4475801 | MS.gene54738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6.2:4475653-4475672 | None:intergenic | 15.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6.2:4475740-4475759 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6.2:4475912-4475931 | MS.gene54738:CDS | 20.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6.2:4475974-4475993 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6.2:4475696-4475715 | MS.gene54738:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6.2:4475827-4475846 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6.2:4475916-4475935 | MS.gene54738:CDS | 25.0% |
| !!! | GATATTTTAGCTATGAGTTT+TGG | - | chr6.2:4475999-4476018 | MS.gene54738:CDS | 25.0% |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6.2:4476132-4476151 | MS.gene54738:CDS | 30.0% | |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6.2:4476128-4476147 | MS.gene54738:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6.2:4476376-4476395 | None:intergenic | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6.2:4476144-4476163 | MS.gene54738:CDS | 30.0% | |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6.2:4476227-4476246 | MS.gene54738:CDS | 30.0% | |
| ! | GTCTAGTTATGAATTTTCTG+AGG | - | chr6.2:4476021-4476040 | MS.gene54738:CDS | 30.0% |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6.2:4476189-4476208 | MS.gene54738:CDS | 30.0% |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6.2:4476374-4476393 | MS.gene54738:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTATTCAA+AGG | - | chr6.2:4476031-4476050 | MS.gene54738:CDS | 30.0% |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6.2:4476199-4476218 | None:intergenic | 35.0% | |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6.2:4476202-4476221 | None:intergenic | 35.0% | |
| CTCCAATGTAACAAACTAAC+TGG | + | chr6.2:4476313-4476332 | None:intergenic | 35.0% | |
| GAACATAGATGGAATCAACA+TGG | - | chr6.2:4476238-4476257 | MS.gene54738:CDS | 35.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6.2:4475707-4475726 | MS.gene54738:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6.2:4476153-4476172 | MS.gene54738:CDS | 35.0% | |
| TGAGGCATATAGAGATCATA+AGG | + | chr6.2:4476403-4476422 | None:intergenic | 35.0% | |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6.2:4476152-4476171 | MS.gene54738:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6.2:4476320-4476339 | MS.gene54738:CDS | 35.0% | |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6.2:4476072-4476091 | MS.gene54738:CDS | 35.0% | |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6.2:4476319-4476338 | MS.gene54738:CDS | 35.0% | |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6.2:4476070-4476089 | None:intergenic | 35.0% |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6.2:4475800-4475819 | None:intergenic | 35.0% |
| !! | ATGCCATGTTATTTCAACAC+TGG | - | chr6.2:4476064-4476083 | MS.gene54738:CDS | 35.0% |
| !! | GTCCAGTTAGTTTGTTACAT+TGG | - | chr6.2:4476308-4476327 | MS.gene54738:CDS | 35.0% |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6.2:4476313-4476332 | MS.gene54738:CDS | 35.0% |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6.2:4476092-4476111 | MS.gene54738:CDS | 35.0% |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6.2:4476196-4476215 | MS.gene54738:CDS | 35.0% |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6.2:4476199-4476218 | MS.gene54738:CDS | 35.0% |
| AGATGGAATCAACATGGTCT+TGG | - | chr6.2:4476244-4476263 | MS.gene54738:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6.2:4476286-4476305 | MS.gene54738:CDS | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6.2:4476349-4476368 | None:intergenic | 40.0% | |
| GATCTCTATATGCCTCATGT+GGG | - | chr6.2:4476406-4476425 | MS.gene54738:CDS | 40.0% | |
| GTGAGAAGGGTTTATAAGCT+TGG | - | chr6.2:4476166-4476185 | MS.gene54738:CDS | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6.2:4476412-4476431 | MS.gene54738:CDS | 40.0% | |
| TGATCTCTATATGCCTCATG+TGG | - | chr6.2:4476405-4476424 | MS.gene54738:CDS | 40.0% | |
| TGTAACAAACTAACTGGACC+AGG | + | chr6.2:4476307-4476326 | None:intergenic | 40.0% | |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6.2:4476100-4476119 | MS.gene54738:CDS | 40.0% |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6.2:4476084-4476103 | MS.gene54738:CDS | 40.0% |
| !! | TTGACCGATTCGAAGGTAAT+CGG | - | chr6.2:4475944-4475963 | MS.gene54738:CDS | 40.0% |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6.2:4476078-4476097 | MS.gene54738:CDS | 45.0% | |
| GAATGTCCATATCCCACATG+AGG | + | chr6.2:4476421-4476440 | None:intergenic | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6.2:4476247-4476266 | MS.gene54738:CDS | 45.0% |
| !! | TGCACCGATTACCTTCGAAT+CGG | + | chr6.2:4475951-4475970 | None:intergenic | 45.0% |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6.2:4476329-4476348 | MS.gene54738:CDS | 50.0% | |
| TTCGAAGGTAATCGGTGCAC+CGG | - | chr6.2:4475952-4475971 | MS.gene54738:CDS | 50.0% | |
| !! | GGTTTCGTTGACCGATTCGA+AGG | - | chr6.2:4475937-4475956 | MS.gene54738:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 4475611 | 4476450 | 4475611 | ID=MS.gene54738 |
| chr6.2 | mRNA | 4475611 | 4476450 | 4475611 | ID=MS.gene54738.t1;Parent=MS.gene54738 |
| chr6.2 | exon | 4475611 | 4476450 | 4475611 | ID=MS.gene54738.t1.exon1;Parent=MS.gene54738.t1 |
| chr6.2 | CDS | 4475611 | 4476450 | 4475611 | ID=cds.MS.gene54738.t1;Parent=MS.gene54738.t1 |
| Gene Sequence |
| Protein sequence |
