AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04998


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04998.t1 MTR_3g065080 96.583 439 15 0 1 439 1 439 0.0 858
MS.gene04998.t1 MTR_5g077510 64.334 443 149 8 1 438 1 439 0.0 541
MS.gene04998.t1 MTR_6g071340 47.255 419 203 7 33 438 2 415 4.41e-123 364
MS.gene04998.t1 MTR_5g048050 47.017 419 204 7 33 438 22 435 3.88e-121 360
MS.gene04998.t1 MTR_7g106340 35.225 423 247 10 32 436 4 417 2.45e-61 205
MS.gene04998.t1 MTR_2g087350 35.238 420 240 11 31 436 1 402 6.60e-60 201
MS.gene04998.t1 MTR_1g056870 33.937 442 244 12 32 436 3 433 3.92e-59 200
MS.gene04998.t1 MTR_1g056880 34.163 442 243 11 32 436 3 433 8.90e-59 199
MS.gene04998.t1 MTR_4g085720 32.117 411 251 9 34 434 12 404 4.43e-58 196
MS.gene04998.t1 MTR_1g056840 32.653 441 225 13 32 436 3 407 2.24e-51 179
MS.gene04998.t1 MTR_1g056910 31.579 399 247 13 31 416 1 386 2.20e-47 168
MS.gene04998.t1 MTR_4g051515 27.619 420 269 14 33 432 3 407 5.98e-40 148
MS.gene04998.t1 MTR_4g063800 25.899 417 268 12 25 426 244 634 1.95e-34 136
MS.gene04998.t1 MTR_3g095730 25.653 421 275 12 34 435 11 412 2.17e-34 133
MS.gene04998.t1 MTR_8g092870 26.824 425 267 13 34 435 8 411 7.31e-34 131
MS.gene04998.t1 MTR_5g083030 27.711 415 250 13 34 419 291 684 6.15e-33 132
MS.gene04998.t1 MTR_4g485520 25.686 401 261 11 32 418 101 478 1.19e-32 129
MS.gene04998.t1 MTR_4g485520 25.686 401 261 11 32 418 269 646 3.52e-32 129
MS.gene04998.t1 MTR_7g059405 27.047 403 242 17 36 419 264 633 3.67e-31 126
MS.gene04998.t1 MTR_4g107010 29.894 378 225 14 3 360 247 604 1.14e-29 122
MS.gene04998.t1 MTR_5g015210 27.390 387 253 8 36 417 67 430 3.42e-29 119
MS.gene04998.t1 MTR_7g078330 24.695 328 218 8 9 324 240 550 2.08e-27 115
MS.gene04998.t1 MTR_3g096370 68.571 70 22 0 33 102 7 76 8.70e-27 111
MS.gene04998.t1 MTR_2g018010 28.438 320 179 14 34 328 290 584 8.46e-26 110
MS.gene04998.t1 MTR_1g017770 26.969 419 243 13 26 417 31 413 1.00e-24 106
MS.gene04998.t1 MTR_4g028960 27.796 313 166 13 22 319 262 529 2.24e-24 106
MS.gene04998.t1 MTR_3g085610 27.869 305 174 7 37 335 281 545 8.34e-23 101
MS.gene04998.t1 MTR_4g091880 24.615 390 237 12 35 420 4 340 1.48e-22 98.6
MS.gene04998.t1 MTR_1g094215 26.012 346 226 9 36 370 64 390 1.69e-22 99.8
MS.gene04998.t1 MTR_1g094215 26.361 349 221 11 36 370 247 573 2.07e-22 100
MS.gene04998.t1 MTR_4g091880 25.441 397 253 13 35 420 4 368 2.46e-22 98.6
MS.gene04998.t1 MTR_3g078160 27.692 325 194 12 37 341 276 579 5.56e-22 99.4
MS.gene04998.t1 MTR_3g078160 27.692 325 194 12 37 341 276 579 6.33e-22 99.0
MS.gene04998.t1 MTR_7g116600 47.000 100 45 3 32 131 74 165 1.93e-20 93.6
MS.gene04998.t1 MTR_7g053260 52.174 69 33 0 34 102 76 144 5.75e-20 92.4
MS.gene04998.t1 MTR_3g078160 28.417 278 163 10 37 295 276 536 6.70e-20 92.4
MS.gene04998.t1 MTR_5g034440 55.224 67 30 0 40 106 284 350 3.78e-19 90.5
MS.gene04998.t1 MTR_1g069845 47.143 70 37 0 34 103 122 191 1.57e-18 88.6
MS.gene04998.t1 MTR_1g069845 47.143 70 37 0 34 103 243 312 2.51e-18 88.2
MS.gene04998.t1 MTR_1g069845 47.143 70 37 0 34 103 239 308 2.74e-18 87.8
MS.gene04998.t1 MTR_7g097020 44.595 74 41 0 34 107 239 312 3.46e-18 87.8
MS.gene04998.t1 MTR_8g080280 39.560 91 49 1 37 127 283 367 7.09e-18 86.7
MS.gene04998.t1 MTR_2g011140 25.313 399 241 16 21 400 1 361 8.01e-17 82.0
MS.gene04998.t1 MTR_8g077205 23.591 479 289 15 17 433 258 721 1.46e-16 82.8
MS.gene04998.t1 MTR_1g079450 25.253 297 183 11 34 314 61 334 4.98e-16 80.1
MS.gene04998.t1 MTR_8g077205 38.614 101 56 2 17 117 146 240 5.87e-16 80.5
MS.gene04998.t1 MTR_3g466220 41.892 74 43 0 34 107 231 304 4.86e-15 77.8
MS.gene04998.t1 MTR_3g466220 41.892 74 43 0 34 107 210 283 5.38e-15 77.8
MS.gene04998.t1 MTR_2g096850 45.070 71 39 0 32 102 585 655 1.28e-14 76.6
MS.gene04998.t1 MTR_2g096850 45.070 71 39 0 32 102 736 806 1.61e-14 76.3
MS.gene04998.t1 MTR_5g020570 38.372 86 49 2 32 117 269 350 1.87e-14 76.3
MS.gene04998.t1 MTR_5g020570 38.372 86 49 2 32 117 284 365 1.97e-14 75.9
MS.gene04998.t1 MTR_3g096370 72.093 43 12 0 33 75 7 49 5.12e-14 72.8
MS.gene04998.t1 MTR_1g093965 46.875 64 31 1 49 112 1 61 5.77e-14 70.9
MS.gene04998.t1 MTR_7g117890 27.237 257 156 8 40 292 259 488 1.15e-13 73.9
MS.gene04998.t1 MTR_1g093995 46.875 64 31 1 49 112 1 61 1.92e-13 69.3
MS.gene04998.t1 MTR_1g090320 40.625 96 48 4 31 118 506 600 5.62e-13 71.6
MS.gene04998.t1 MTR_1g090320 40.625 96 48 4 31 118 504 598 5.76e-13 71.6
MS.gene04998.t1 MTR_8g103227 38.636 88 48 2 22 108 386 468 1.13e-12 70.9
MS.gene04998.t1 MTR_3g115670 25.157 318 176 14 22 316 12 290 2.23e-12 69.7
MS.gene04998.t1 MTR_5g032010 34.247 73 48 0 36 108 732 804 5.30e-12 68.6
MS.gene04998.t1 MTR_1g100820 36.364 66 42 0 37 102 649 714 1.41e-11 67.0
MS.gene04998.t1 MTR_3g008270 43.939 66 36 1 37 102 731 795 1.45e-11 67.0
MS.gene04998.t1 MTR_1g100820 36.364 66 42 0 37 102 647 712 1.53e-11 67.0
MS.gene04998.t1 MTR_8g027140 41.176 68 40 0 40 107 263 330 8.54e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04998.t1 AT5G37490 46.635 416 201 10 33 438 28 432 1.78e-109 330
MS.gene04998.t1 AT1G66160 41.487 417 215 9 33 438 30 428 5.48e-100 305
MS.gene04998.t1 AT1G66160 39.089 417 209 10 33 438 30 412 4.90e-88 274
MS.gene04998.t1 AT3G02840 42.197 346 181 8 107 438 36 376 1.66e-74 238
MS.gene04998.t1 AT2G35930 34.917 421 249 8 27 436 3 409 4.67e-64 212
MS.gene04998.t1 AT3G52450 32.353 442 251 10 32 436 3 433 1.06e-56 193
MS.gene04998.t1 AT3G19380 32.990 388 230 12 34 406 12 384 1.40e-54 187
MS.gene04998.t1 AT1G49780 33.668 398 240 11 34 418 12 398 1.92e-53 184
MS.gene04998.t1 AT3G11840 32.379 454 247 13 32 437 6 447 1.81e-47 169
MS.gene04998.t1 AT5G09800 27.525 396 258 11 35 418 10 388 3.16e-35 135
MS.gene04998.t1 AT2G28830 27.465 426 267 14 16 424 166 566 3.24e-33 132
MS.gene04998.t1 AT5G64660 26.750 400 270 10 34 418 8 399 5.37e-33 129
MS.gene04998.t1 AT3G46510 25.954 393 256 11 36 416 256 625 1.58e-31 127
MS.gene04998.t1 AT3G49810 25.700 393 264 6 36 423 64 433 3.80e-31 124
MS.gene04998.t1 AT1G23030 26.884 398 253 12 32 418 237 607 1.24e-30 125
MS.gene04998.t1 AT1G71020 26.634 413 256 14 26 418 85 470 3.09e-30 122
MS.gene04998.t1 AT1G71020 26.634 413 256 14 26 418 233 618 8.91e-30 122
MS.gene04998.t1 AT5G65920 26.076 395 264 7 36 425 60 431 2.09e-29 119
MS.gene04998.t1 AT5G65920 26.076 395 264 7 36 425 60 431 2.09e-29 119
MS.gene04998.t1 AT3G18710 26.238 404 261 12 34 418 10 395 5.55e-27 112
MS.gene04998.t1 AT3G54850 27.000 400 250 14 36 419 248 621 2.87e-26 112
MS.gene04998.t1 AT5G42340 23.864 264 183 6 34 293 288 537 8.21e-22 98.6
MS.gene04998.t1 AT3G07360 50.000 76 38 0 31 106 69 144 2.32e-20 93.6
MS.gene04998.t1 AT1G29340 44.037 109 53 3 34 134 303 411 7.94e-20 92.8
MS.gene04998.t1 AT1G10560 27.434 339 213 13 42 362 294 617 1.67e-19 91.7
MS.gene04998.t1 AT5G01830 28.082 292 173 10 30 306 268 537 1.23e-18 89.0
MS.gene04998.t1 AT4G21350 26.282 312 197 10 36 339 5 291 1.26e-18 87.4
MS.gene04998.t1 AT1G27910 41.758 91 47 1 37 127 280 364 1.30e-18 89.0
MS.gene04998.t1 AT3G54790 49.315 73 37 0 34 106 200 272 5.77e-18 87.0
MS.gene04998.t1 AT3G54790 49.315 73 37 0 34 106 236 308 7.13e-18 86.7
MS.gene04998.t1 AT3G54790 49.315 73 37 0 34 106 236 308 7.13e-18 86.7
MS.gene04998.t1 AT1G60190 25.145 346 232 12 40 370 282 615 7.20e-18 86.7
MS.gene04998.t1 AT1G67530 45.000 80 40 1 37 116 273 348 9.71e-18 85.9
MS.gene04998.t1 AT1G24330 40.659 91 48 1 37 127 276 360 1.22e-17 85.9
MS.gene04998.t1 AT1G24330 40.659 91 48 1 37 127 276 360 1.22e-17 85.9
MS.gene04998.t1 AT1G67530 45.000 80 40 1 37 116 273 348 1.23e-17 85.9
MS.gene04998.t1 AT1G67530 45.000 80 40 1 37 116 273 348 1.23e-17 85.9
MS.gene04998.t1 AT1G67530 45.000 80 40 1 37 116 273 348 1.23e-17 85.9
MS.gene04998.t1 AT5G67340 44.737 76 42 0 34 109 238 313 1.36e-16 82.8
MS.gene04998.t1 AT5G67340 44.737 76 42 0 34 109 238 313 1.36e-16 82.8
MS.gene04998.t1 AT4G36550 40.278 72 43 0 35 106 218 289 3.99e-15 78.2
MS.gene04998.t1 AT1G01660 35.556 90 57 1 18 107 481 569 8.29e-15 77.0
MS.gene04998.t1 AT1G01660 35.556 90 57 1 18 107 480 568 8.35e-15 77.0
MS.gene04998.t1 AT2G45920 39.744 78 47 0 32 109 321 398 9.42e-15 76.3
MS.gene04998.t1 AT1G01680 38.571 70 43 0 40 109 237 306 9.91e-15 75.1
MS.gene04998.t1 AT2G23140 35.714 98 59 1 34 131 231 324 2.52e-14 75.9
MS.gene04998.t1 AT2G23140 35.714 98 59 1 34 131 228 321 2.70e-14 75.9
MS.gene04998.t1 AT2G23140 35.714 98 59 1 34 131 228 321 2.70e-14 75.9
MS.gene04998.t1 AT2G23140 37.000 100 57 2 34 131 39 134 4.34e-14 74.7
MS.gene04998.t1 AT2G23140 37.000 100 57 2 34 131 39 134 4.34e-14 74.7
MS.gene04998.t1 AT5G57035 40.909 66 39 0 37 102 709 774 9.19e-14 73.9
MS.gene04998.t1 AT1G56030 42.857 70 40 0 31 100 318 387 4.29e-13 70.9
MS.gene04998.t1 AT5G51270 44.286 70 38 1 37 106 736 804 5.77e-13 71.6
MS.gene04998.t1 AT5G51270 44.286 70 38 1 37 106 736 804 5.77e-13 71.6
MS.gene04998.t1 AT5G65500 40.299 67 40 0 36 102 723 789 6.98e-13 71.2
MS.gene04998.t1 AT5G65500 40.299 67 40 0 36 102 715 781 7.07e-13 71.2
MS.gene04998.t1 AT2G19410 43.939 66 36 1 37 102 712 776 7.37e-13 71.2
MS.gene04998.t1 AT2G19410 43.939 66 36 1 37 102 726 790 7.50e-13 71.2
MS.gene04998.t1 AT2G19410 43.939 66 36 1 37 102 747 811 7.65e-13 71.2
MS.gene04998.t1 AT3G61390 37.879 66 41 0 37 102 279 344 3.70e-12 67.8
MS.gene04998.t1 AT3G61390 37.879 66 41 0 37 102 354 419 5.18e-12 67.8
MS.gene04998.t1 AT3G49060 37.879 66 41 0 37 102 726 791 5.51e-12 68.6
MS.gene04998.t1 AT3G49060 37.879 66 41 0 37 102 736 801 6.10e-12 68.2
MS.gene04998.t1 AT3G49060 37.879 66 41 0 37 102 703 768 6.15e-12 68.2
MS.gene04998.t1 AT1G56040 40.625 64 38 0 37 100 354 417 1.26e-11 66.6
MS.gene04998.t1 AT4G25160 40.909 66 38 1 37 102 767 831 7.61e-11 64.7

Find 81 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTGTTGATGGAGAAAA+AGG 0.166972 3.3:+58677642 MS.gene04998:CDS
GAAAGTTTCTGATTTGTAAC+TGG 0.278770 3.3:-58676940 None:intergenic
TAGTGAAAAGTTTGTTGAAT+TGG 0.291875 3.3:+58677596 MS.gene04998:CDS
AGGAATAAGAGGGTTATAAT+TGG 0.297670 3.3:+58677189 MS.gene04998:CDS
TGAGGAACATGTTGTTGTTT+TGG 0.298411 3.3:+58677269 MS.gene04998:CDS
ATTCCTGTTGATAGAGTTAC+TGG 0.298592 3.3:-58676862 None:intergenic
CGTCTTTGAATTGTTTGGTT+TGG 0.322890 3.3:+58677370 MS.gene04998:CDS
AAGTTGGTGTTTAGCTTTGC+CGG 0.325510 3.3:-58676749 None:intergenic
AGTGAAAAGTTTGTTGAATT+GGG 0.337948 3.3:+58677597 MS.gene04998:CDS
TGGATTGTTAAAACCTCTTT+CGG 0.347696 3.3:+58677315 MS.gene04998:CDS
TGAGTTTATTGGTAAGATTA+AGG 0.348264 3.3:+58677146 MS.gene04998:CDS
GTCTTCGTCTTTGAATTGTT+TGG 0.354146 3.3:+58677365 MS.gene04998:CDS
TTGCTTGAAACAATTGTTGA+TGG 0.366375 3.3:+58677633 MS.gene04998:CDS
TGTGTTGAAAATAGTTCTTA+TGG 0.375679 3.3:+58677015 MS.gene04998:CDS
TGAAGGTGTTGTTGAGGGTT+TGG 0.377823 3.3:+58677476 MS.gene04998:CDS
GAGAGAGTGAGAGGAATAAG+AGG 0.381694 3.3:+58677178 MS.gene04998:CDS
AAGATTGTTAAGGAACCAAT+TGG 0.381968 3.3:+58677501 MS.gene04998:CDS
GACTCACCGGACAACGGAAA+TGG 0.385326 3.3:-58676822 None:intergenic
TAATTCGCCGTCGCCGGCGC+CGG 0.395081 3.3:-58676773 None:intergenic
CGCCGGCGACGGCGAATTAA+CGG 0.401684 3.3:+58676777 MS.gene04998:CDS
AAGAGGGTTATAATTGGAAA+TGG 0.402171 3.3:+58677195 MS.gene04998:CDS
TTTGTAGCACTTGACCCAAT+TGG 0.406484 3.3:-58677516 None:intergenic
AAAGCTAAACACCAACTTCC+CGG 0.410804 3.3:+58676754 MS.gene04998:CDS
CCCAACCCATTTCCGTTGTC+CGG 0.411042 3.3:+58676816 MS.gene04998:CDS
CACCGTTAATTCGCCGTCGC+CGG 0.412333 3.3:-58676779 None:intergenic
GAAGATACTATGTGAGAAGA+AGG 0.414400 3.3:+58677821 MS.gene04998:CDS
TGTTTATGTGATTGTAAGAA+AGG 0.414472 3.3:+58677696 MS.gene04998:CDS
TGTTGGTTATGTTGCAAGTT+GGG 0.414797 3.3:+58677892 MS.gene04998:CDS
AAAGTTTGTTGAATTGGGTT+TGG 0.438107 3.3:+58677602 MS.gene04998:CDS
AATTCGCCGTCGCCGGCGCC+GGG 0.439130 3.3:-58676772 None:intergenic
GTGTTGAAAATAGTTCTTAT+GGG 0.440410 3.3:+58677016 MS.gene04998:CDS
TGAAAAGGCACTAGGTGTAT+TGG 0.441241 3.3:+58677671 MS.gene04998:CDS
TTAACCTCGTACGCTGAAAC+AGG 0.447425 3.3:-58677066 None:intergenic
CGTCGCCGGCGCCGGGAAGT+TGG 0.449959 3.3:-58676765 None:intergenic
GGTTTGTACTAGGTTGTTGT+CGG 0.456977 3.3:+58677092 MS.gene04998:CDS
CCGGACAACGGAAATGGGTT+GGG 0.459441 3.3:-58676816 None:intergenic
ATGTGAGAAGAAGGAAGAAA+GGG 0.461330 3.3:+58677830 MS.gene04998:CDS
TATGTGAGAAGAAGGAAGAA+AGG 0.461878 3.3:+58677829 MS.gene04998:CDS
GATCCAGTAACTCTATCAAC+AGG 0.465887 3.3:+58676859 MS.gene04998:CDS
GGGTTTGGTGAAGATTGTTA+AGG 0.467901 3.3:+58677491 MS.gene04998:CDS
AGAATTGAAGGTGTTGTTGA+GGG 0.472391 3.3:+58677471 MS.gene04998:CDS
TTGGTAAGATTAAGGTTTGG+TGG 0.475482 3.3:+58677154 MS.gene04998:CDS
ATAGATTCAGCATCGAGAAA+TGG 0.477438 3.3:+58676893 MS.gene04998:CDS
AGGTTAATGAGGTTTGTACT+AGG 0.482538 3.3:+58677082 MS.gene04998:CDS
ACTCACCGGACAACGGAAAT+GGG 0.483936 3.3:-58676821 None:intergenic
GAAGAGTTATCAAGAATTGA+AGG 0.485697 3.3:+58677459 MS.gene04998:CDS
TTGATTGAGGCAATTCAACT+TGG 0.490975 3.3:+58677855 MS.gene04998:CDS
ACCGGACAACGGAAATGGGT+TGG 0.495073 3.3:-58676817 None:intergenic
GTTTATGTGATTGTAAGAAA+GGG 0.496421 3.3:+58677697 MS.gene04998:CDS
AGAGAGTGAGAGGAATAAGA+GGG 0.507848 3.3:+58677179 MS.gene04998:CDS
ATCGAGAAATGGATCGAAGC+TGG 0.513343 3.3:+58676904 MS.gene04998:CDS
TTGTTGGTTATGTTGCAAGT+TGG 0.518220 3.3:+58677891 MS.gene04998:CDS
CAACTTCCCGGCGCCGGCGA+CGG 0.518938 3.3:+58676766 MS.gene04998:CDS
TTTGGTGGAGAGAGAGTGAG+AGG 0.525448 3.3:+58677169 MS.gene04998:CDS
GTTTGTACTAGGTTGTTGTC+GGG 0.528503 3.3:+58677093 MS.gene04998:CDS
AAAGTTTCTGATTTGTAACT+GGG 0.529983 3.3:-58676939 None:intergenic
AGAAACATGTTCCGCCGCAC+CGG 0.531078 3.3:+58676730 MS.gene04998:CDS
TTATTGGTAAGATTAAGGTT+TGG 0.533540 3.3:+58677151 MS.gene04998:CDS
GAGTTGTTGAAATTGTTGAA+TGG 0.546361 3.3:+58677945 MS.gene04998:CDS
AAGAATTGAAGGTGTTGTTG+AGG 0.552708 3.3:+58677470 MS.gene04998:CDS
AAACACCAACTTCCCGGCGC+CGG 0.552940 3.3:+58676760 MS.gene04998:CDS
TTCAGCGTACGAGGTTAATG+AGG 0.552963 3.3:+58677071 MS.gene04998:CDS
GAAACAGGTATACGAGGTGT+TGG 0.554990 3.3:-58677051 None:intergenic
GTTTAGCTTTGCCGGTGCGG+CGG 0.564843 3.3:-58676741 None:intergenic
GTGATTTGGTGTGATTTCGA+AGG 0.579587 3.3:-58676965 None:intergenic
TTCATCAAGTCTAGACTCAC+CGG 0.580014 3.3:-58676835 None:intergenic
AGATTGTTAAGGAACCAATT+GGG 0.580879 3.3:+58677502 MS.gene04998:CDS
CGACGGCGAATTAACGGTGG+AGG 0.584194 3.3:+58676783 MS.gene04998:CDS
GGTGTTTAGCTTTGCCGGTG+CGG 0.584454 3.3:-58676744 None:intergenic
TATGTTGCAAGTTGGGTGTG+AGG 0.588109 3.3:+58677899 MS.gene04998:CDS
AAAAGCTTCTTAATCACGAG+AGG 0.590068 3.3:-58677753 None:intergenic
TGATTGTAAGAAAGGGAAAG+AGG 0.594131 3.3:+58677704 MS.gene04998:CDS
TATACCTGTTTCAGCGTACG+AGG 0.604860 3.3:+58677062 MS.gene04998:CDS
CTCGATGCTGAATCTATCGT+AGG 0.614355 3.3:-58676887 None:intergenic
GGGATATGTGAAAAGGCACT+AGG 0.622666 3.3:+58677663 MS.gene04998:CDS
ACAGCAAAACTAGAAGCCAA+AGG 0.636688 3.3:-58677786 None:intergenic
AGTCTAGACTCACCGGACAA+CGG 0.656680 3.3:-58676828 None:intergenic
TGGGTGTGAGGAGAAAACAA+AGG 0.673609 3.3:+58677911 MS.gene04998:CDS
GTGTGAGGAGAAAACAAAGG+AGG 0.681227 3.3:+58677914 MS.gene04998:CDS
TACGCTGAAACAGGTATACG+AGG 0.716974 3.3:-58677057 None:intergenic
CGGCGACGGCGAATTAACGG+TGG 0.722796 3.3:+58676780 MS.gene04998:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAGATGGTAAAGATTT+AGG + chr3.3:58677393-58677412 MS.gene04998:CDS 20.0%
! GTGTTGAAAATAGTTCTTAT+GGG + chr3.3:58677016-58677035 MS.gene04998:CDS 25.0%
! GTTTATGTGATTGTAAGAAA+GGG + chr3.3:58677697-58677716 MS.gene04998:CDS 25.0%
! TAAGAAAAATGATTCAGAGT+TGG + chr3.3:58676992-58677011 MS.gene04998:CDS 25.0%
! TGAGTTTATTGGTAAGATTA+AGG + chr3.3:58677146-58677165 MS.gene04998:CDS 25.0%
! TGTGTTGAAAATAGTTCTTA+TGG + chr3.3:58677015-58677034 MS.gene04998:CDS 25.0%
! TGTTTATGTGATTGTAAGAA+AGG + chr3.3:58677696-58677715 MS.gene04998:CDS 25.0%
! TTATTGGTAAGATTAAGGTT+TGG + chr3.3:58677151-58677170 MS.gene04998:CDS 25.0%
!! AAAAAGTGTGTTGAGTTTAT+TGG + chr3.3:58677135-58677154 MS.gene04998:CDS 25.0%
!! AAAGTTTCTGATTTGTAACT+GGG - chr3.3:58676942-58676961 None:intergenic 25.0%
!! ATTTTTCTTATGGTGTGATT+TGG - chr3.3:58676982-58677001 None:intergenic 25.0%
!! TTTTTCATGTGTTTCTTTTG+AGG + chr3.3:58677251-58677270 MS.gene04998:CDS 25.0%
!!! AATTTTCAAGTTGGTTTCAT+CGG + chr3.3:58677554-58677573 MS.gene04998:CDS 25.0%
!!! ACTCTGAATCATTTTTCTTA+TGG - chr3.3:58676992-58677011 None:intergenic 25.0%
!!! AGATTTTGGAGATTTTAACA+TGG + chr3.3:58677295-58677314 MS.gene04998:CDS 25.0%
!!! AGTGAAAAGTTTGTTGAATT+GGG + chr3.3:58677597-58677616 MS.gene04998:CDS 25.0%
!!! TAGTGAAAAGTTTGTTGAAT+TGG + chr3.3:58677596-58677615 MS.gene04998:CDS 25.0%
!!! TTTGACTACAATTTTCAAGT+TGG + chr3.3:58677545-58677564 MS.gene04998:CDS 25.0%
AAGAGGGTTATAATTGGAAA+TGG + chr3.3:58677195-58677214 MS.gene04998:CDS 30.0%
AAGATTGTTAAGGAACCAAT+TGG + chr3.3:58677501-58677520 MS.gene04998:CDS 30.0%
AGAAAAAGGGATATGTGAAA+AGG + chr3.3:58677656-58677675 MS.gene04998:CDS 30.0%
AGATTGTTAAGGAACCAATT+GGG + chr3.3:58677502-58677521 MS.gene04998:CDS 30.0%
AGGAATAAGAGGGTTATAAT+TGG + chr3.3:58677189-58677208 MS.gene04998:CDS 30.0%
GAAGAGTTATCAAGAATTGA+AGG + chr3.3:58677459-58677478 MS.gene04998:CDS 30.0%
GAGTTGTTGAAATTGTTGAA+TGG + chr3.3:58677945-58677964 MS.gene04998:CDS 30.0%
TGGATTGTTAAAACCTCTTT+CGG + chr3.3:58677315-58677334 MS.gene04998:CDS 30.0%
TTGCTTGAAACAATTGTTGA+TGG + chr3.3:58677633-58677652 MS.gene04998:CDS 30.0%
! ACAATTGTTGATGGAGAAAA+AGG + chr3.3:58677642-58677661 MS.gene04998:CDS 30.0%
! CAATTGTTGATGGAGAAAAA+GGG + chr3.3:58677643-58677662 MS.gene04998:CDS 30.0%
! CGTGATTAAGAAGCTTTTAA+GGG + chr3.3:58677758-58677777 MS.gene04998:CDS 30.0%
! GAAAGTTTCTGATTTGTAAC+TGG - chr3.3:58676943-58676962 None:intergenic 30.0%
! TCGTGATTAAGAAGCTTTTA+AGG + chr3.3:58677757-58677776 MS.gene04998:CDS 30.0%
!! AAAGTTTGTTGAATTGGGTT+TGG + chr3.3:58677602-58677621 MS.gene04998:CDS 30.0%
!!! AGTTTGTTCTGTTTTAGCTA+CGG + chr3.3:58677218-58677237 MS.gene04998:CDS 30.0%
!!! TGTTTGGTTTGGTTTTTAGA+TGG + chr3.3:58677381-58677400 MS.gene04998:CDS 30.0%
AAAAGCTTCTTAATCACGAG+AGG - chr3.3:58677756-58677775 None:intergenic 35.0%
AGGTTAATGAGGTTTGTACT+AGG + chr3.3:58677082-58677101 MS.gene04998:CDS 35.0%
ATGTGAGAAGAAGGAAGAAA+GGG + chr3.3:58677830-58677849 MS.gene04998:CDS 35.0%
CGTCTTTGAATTGTTTGGTT+TGG + chr3.3:58677370-58677389 MS.gene04998:CDS 35.0%
GAAGATACTATGTGAGAAGA+AGG + chr3.3:58677821-58677840 MS.gene04998:CDS 35.0%
GTCTTCGTCTTTGAATTGTT+TGG + chr3.3:58677365-58677384 MS.gene04998:CDS 35.0%
TATGTGAGAAGAAGGAAGAA+AGG + chr3.3:58677829-58677848 MS.gene04998:CDS 35.0%
TGATTGTAAGAAAGGGAAAG+AGG + chr3.3:58677704-58677723 MS.gene04998:CDS 35.0%
TTGATTGAGGCAATTCAACT+TGG + chr3.3:58677855-58677874 MS.gene04998:CDS 35.0%
TTGGTAAGATTAAGGTTTGG+TGG + chr3.3:58677154-58677173 MS.gene04998:CDS 35.0%
! ATAGATTCAGCATCGAGAAA+TGG + chr3.3:58676893-58676912 MS.gene04998:CDS 35.0%
! ATTCCTGTTGATAGAGTTAC+TGG - chr3.3:58676865-58676884 None:intergenic 35.0%
! TGGAGCTTTTCAGAAATTGT+TGG + chr3.3:58677875-58677894 MS.gene04998:CDS 35.0%
! TGTTGGTTATGTTGCAAGTT+GGG + chr3.3:58677892-58677911 MS.gene04998:CDS 35.0%
! TTGTTGGTTATGTTGCAAGT+TGG + chr3.3:58677891-58677910 MS.gene04998:CDS 35.0%
!! AAGAATTGAAGGTGTTGTTG+AGG + chr3.3:58677470-58677489 MS.gene04998:CDS 35.0%
!! AGAATTGAAGGTGTTGTTGA+GGG + chr3.3:58677471-58677490 MS.gene04998:CDS 35.0%
!!! TGAGGAACATGTTGTTGTTT+TGG + chr3.3:58677269-58677288 MS.gene04998:CDS 35.0%
!!! TGTTGTTTTGGAGGAGATTT+TGG + chr3.3:58677281-58677300 MS.gene04998:CDS 35.0%
AAAGCTAAACACCAACTTCC+CGG + chr3.3:58676754-58676773 MS.gene04998:CDS 40.0%
ACAGCAAAACTAGAAGCCAA+AGG - chr3.3:58677789-58677808 None:intergenic 40.0%
AGAGAGTGAGAGGAATAAGA+GGG + chr3.3:58677179-58677198 MS.gene04998:CDS 40.0%
GATCCAGTAACTCTATCAAC+AGG + chr3.3:58676859-58676878 MS.gene04998:CDS 40.0%
GGTTTGTACTAGGTTGTTGT+CGG + chr3.3:58677092-58677111 MS.gene04998:CDS 40.0%
GTTTGTACTAGGTTGTTGTC+GGG + chr3.3:58677093-58677112 MS.gene04998:CDS 40.0%
TTCATCAAGTCTAGACTCAC+CGG - chr3.3:58676838-58676857 None:intergenic 40.0%
TTTGTAGCACTTGACCCAAT+TGG - chr3.3:58677519-58677538 None:intergenic 40.0%
!! AAGTTGGTGTTTAGCTTTGC+CGG - chr3.3:58676752-58676771 None:intergenic 40.0%
!! GGGTTTGGTGAAGATTGTTA+AGG + chr3.3:58677491-58677510 MS.gene04998:CDS 40.0%
!! GTGATTTGGTGTGATTTCGA+AGG - chr3.3:58676968-58676987 None:intergenic 40.0%
!! TGAAAAGGCACTAGGTGTAT+TGG + chr3.3:58677671-58677690 MS.gene04998:CDS 40.0%
!!! GGAACATGTTGTTGTTTTGG+AGG + chr3.3:58677272-58677291 MS.gene04998:CDS 40.0%
!!! GGAAGAAAGGGTTTTGATTG+AGG + chr3.3:58677842-58677861 MS.gene04998:CDS 40.0%
!!! GTTTTGCTGTTGGGATTGTT+AGG + chr3.3:58677799-58677818 MS.gene04998:CDS 40.0%
!!! TGGCTTCTAGTTTTGCTGTT+GGG + chr3.3:58677790-58677809 MS.gene04998:CDS 40.0%
!!! TTGGCTTCTAGTTTTGCTGT+TGG + chr3.3:58677789-58677808 MS.gene04998:CDS 40.0%
ATCGAGAAATGGATCGAAGC+TGG + chr3.3:58676904-58676923 MS.gene04998:CDS 45.0%
CTCGATGCTGAATCTATCGT+AGG - chr3.3:58676890-58676909 None:intergenic 45.0%
GAAACAGGTATACGAGGTGT+TGG - chr3.3:58677054-58677073 None:intergenic 45.0%
GAGAGAGTGAGAGGAATAAG+AGG + chr3.3:58677178-58677197 MS.gene04998:CDS 45.0%
GTGTGAGGAGAAAACAAAGG+AGG + chr3.3:58677914-58677933 MS.gene04998:CDS 45.0%
TACGCTGAAACAGGTATACG+AGG - chr3.3:58677060-58677079 None:intergenic 45.0%
TATACCTGTTTCAGCGTACG+AGG + chr3.3:58677062-58677081 MS.gene04998:CDS 45.0%
TGGGTGTGAGGAGAAAACAA+AGG + chr3.3:58677911-58677930 MS.gene04998:CDS 45.0%
TTAACCTCGTACGCTGAAAC+AGG - chr3.3:58677069-58677088 None:intergenic 45.0%
TTCAGCGTACGAGGTTAATG+AGG + chr3.3:58677071-58677090 MS.gene04998:CDS 45.0%
! CGTTTTCGAATCACCGAAAG+AGG - chr3.3:58677331-58677350 None:intergenic 45.0%
! TATGTTGCAAGTTGGGTGTG+AGG + chr3.3:58677899-58677918 MS.gene04998:CDS 45.0%
!! GGGATATGTGAAAAGGCACT+AGG + chr3.3:58677663-58677682 MS.gene04998:CDS 45.0%
!! TGAAGGTGTTGTTGAGGGTT+TGG + chr3.3:58677476-58677495 MS.gene04998:CDS 45.0%
!!! GCTTTTAAGGGTGTCTCCTT+TGG + chr3.3:58677770-58677789 MS.gene04998:CDS 45.0%
ACTCACCGGACAACGGAAAT+GGG - chr3.3:58676824-58676843 None:intergenic 50.0%
AGTCTAGACTCACCGGACAA+CGG - chr3.3:58676831-58676850 None:intergenic 50.0%
TTTGGTGGAGAGAGAGTGAG+AGG + chr3.3:58677169-58677188 MS.gene04998:CDS 50.0%
ACCGGACAACGGAAATGGGT+TGG - chr3.3:58676820-58676839 None:intergenic 55.0%
AGAAACATGTTCCGCCGCAC+CGG + chr3.3:58676730-58676749 MS.gene04998:CDS 55.0%
CCCAACCCATTTCCGTTGTC+CGG + chr3.3:58676816-58676835 MS.gene04998:CDS 55.0%
GACTCACCGGACAACGGAAA+TGG - chr3.3:58676825-58676844 None:intergenic 55.0%
! CCGGACAACGGAAATGGGTT+GGG - chr3.3:58676819-58676838 None:intergenic 55.0%
!! GGTGTTTAGCTTTGCCGGTG+CGG - chr3.3:58676747-58676766 None:intergenic 55.0%
AAACACCAACTTCCCGGCGC+CGG + chr3.3:58676760-58676779 MS.gene04998:CDS 60.0%
CACCGTTAATTCGCCGTCGC+CGG - chr3.3:58676782-58676801 None:intergenic 60.0%
CGACGGCGAATTAACGGTGG+AGG + chr3.3:58676783-58676802 MS.gene04998:CDS 60.0%
!! GTTTAGCTTTGCCGGTGCGG+CGG - chr3.3:58676744-58676763 None:intergenic 60.0%
CGCCGGCGACGGCGAATTAA+CGG + chr3.3:58676777-58676796 MS.gene04998:CDS 65.0%
CGGCGACGGCGAATTAACGG+TGG + chr3.3:58676780-58676799 MS.gene04998:CDS 65.0%
TAATTCGCCGTCGCCGGCGC+CGG - chr3.3:58676776-58676795 None:intergenic 70.0%
AATTCGCCGTCGCCGGCGCC+GGG - chr3.3:58676775-58676794 None:intergenic 75.0%
!! CAACTTCCCGGCGCCGGCGA+CGG + chr3.3:58676766-58676785 MS.gene04998:CDS 75.0%
!! CGTCGCCGGCGCCGGGAAGT+TGG - chr3.3:58676768-58676787 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 58676709 58678028 58676709 ID=MS.gene04998
chr3.3 mRNA 58676709 58678028 58676709 ID=MS.gene04998.t1;Parent=MS.gene04998
chr3.3 exon 58676709 58678028 58676709 ID=MS.gene04998.t1.exon1;Parent=MS.gene04998.t1
chr3.3 CDS 58676709 58678028 58676709 ID=cds.MS.gene04998.t1;Parent=MS.gene04998.t1
Gene Sequence

>MS.gene04998

ATGGTTTTATCATGGACAAAAAGAAACATGTTCCGCCGCACCGGCAAAGCTAAACACCAACTTCCCGGCGCCGGCGACGGCGAATTAACGGTGGAGGAGATAACAATCCCAACCCATTTCCGTTGTCCGGTGAGTCTAGACTTGATGAAAGATCCAGTAACTCTATCAACAGGAATCACCTACGATAGATTCAGCATCGAGAAATGGATCGAAGCTGGAAACAAAACTTGCCCAGTTACAAATCAGAAACTTTCAACCTTCGAAATCACACCAAATCACACCATAAGAAAAATGATTCAGAGTTGGTGTGTTGAAAATAGTTCTTATGGGATTGAGAGAATTCCAACACCTCGTATACCTGTTTCAGCGTACGAGGTTAATGAGGTTTGTACTAGGTTGTTGTCGGGTTGTAGAAATTTGAATGAGAAAAAGTGTGTTGAGTTTATTGGTAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGTTTGTTCTGTTTTAGCTACGGTTTTTGATTGTTTTTCATGTGTTTCTTTTGAGGAACATGTTGTTGTTTTGGAGGAGATTTTGGAGATTTTAACATGGATTGTTAAAACCTCTTTCGGTGATTCGAAAACGAAGATGTGTTTATCGTCTTCGTCTTTGAATTGTTTGGTTTGGTTTTTAGATGGTAAAGATTTAGGTGCAAGACAAAATGCTGTTTTGTTGCTTAAAGTAATGAATGTTGAAGAGTTATCAAGAATTGAAGGTGTTGTTGAGGGTTTGGTGAAGATTGTTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACTACAATTTTCAAGTTGGTTTCATCGGCGAAAAATAGAGATGAGATTAGTGAAAAGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAAACAATTGTTGATGGAGAAAAAGGGATATGTGAAAAGGCACTAGGTGTATTGGATTGTTTATGTGATTGTAAGAAAGGGAAAGAGGTTGTTCAAATGAACGCTTTAGCTTTGCCTCTCGTGATTAAGAAGCTTTTAAGGGTGTCTCCTTTGGCTTCTAGTTTTGCTGTTGGGATTGTTAGGAAGATACTATGTGAGAAGAAGGAAGAAAGGGTTTTGATTGAGGCAATTCAACTTGGAGCTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAAACAAAGGAGGATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCTGAATGTGTTGATTCTTCATTAGATTTCAAGTATCTCAAGAACTAA

Protein sequence

>MS.gene04998.t1

MVLSWTKRNMFRRTGKAKHQLPGAGDGELTVEEITIPTHFRCPVSLDLMKDPVTLSTGITYDRFSIEKWIEAGNKTCPVTNQKLSTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSAYEVNEVCTRLLSGCRNLNEKKCVEFIGKIKVWWRESERNKRVIIGNGVCSVLATVFDCFSCVSFEEHVVVLEEILEILTWIVKTSFGDSKTKMCLSSSSLNCLVWFLDGKDLGARQNAVLLLKVMNVEELSRIEGVVEGLVKIVKEPIGSSATKACLTTIFKLVSSAKNRDEISEKFVELGLVSFLLETIVDGEKGICEKALGVLDCLCDCKKGKEVVQMNALALPLVIKKLLRVSPLASSFAVGIVRKILCEKKEERVLIEAIQLGAFQKLLVMLQVGCEEKTKEDTTELLKLLNGYRSKAECVDSSLDFKYLKN