AlfalfaGEDB | MS.gene54871

M. sativa cultivar XinJiangDaYe / MS.gene54871

KEGG: -
GO: -
PFAM: PF07899.14 PF19220.3

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54871.t1	KEH39246.1	60.7	966	62	2	1	960	1	654	3.20E-140	509.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54871.t1	Q9LUV4	28.7	237	149	6	719	938	154	387	9.3e-08	60.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54871.t1	A0A072VCB7	60.7	966	62	2	1	960	1	654	2.3e-140	509.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050139	MS.gene54871	0.817302	3.54E-52	-1.69E-46
MS.gene051789	MS.gene54871	0.804474	2.12E-49	-1.69E-46
MS.gene053074	MS.gene54871	0.844369	7.89E-59	-1.69E-46
MS.gene054184	MS.gene54871	0.811697	6.15E-51	-1.69E-46
MS.gene054185	MS.gene54871	0.816456	5.48E-52	-1.69E-46
MS.gene054596	MS.gene54871	0.805271	1.45E-49	-1.69E-46
MS.gene055359	MS.gene54871	0.806312	8.74E-50	-1.69E-46
MS.gene058168	MS.gene54871	0.827453	1.55E-54	-1.69E-46
MS.gene059006	MS.gene54871	0.816022	6.85E-52	-1.69E-46
MS.gene059124	MS.gene54871	0.809793	1.59E-50	-1.69E-46

Showing 1 to 10 of 10 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54871.t1	MTR_2g091250	60.806	819	255	5	207	959	476	1294	0.0	818
MS.gene54871.t1	MTR_2g091250	55.541	749	249	7	2	701	1	714	0.0	655
MS.gene54871.t1	MTR_2g091110	62.914	755	248	4	222	959	562	1301	0.0	778
MS.gene54871.t1	MTR_2g091110	44.083	769	296	14	17	685	7	741	2.60e-127	417
MS.gene54871.t1	MTR_5g078510	72.477	545	91	3	474	959	1	545	0.0	722
MS.gene54871.t1	MTR_5g078510	37.963	324	171	4	222	538	1	301	9.37e-35	140
MS.gene54871.t1	MTR_5g078510	39.615	260	122	2	348	572	1	260	1.04e-32	134
MS.gene54871.t1	MTR_5g078510	37.778	270	119	5	220	482	41	268	1.80e-23	106
MS.gene54871.t1	MTR_5g078510	33.221	298	152	10	100	375	1	273	1.30e-15	81.6
MS.gene54871.t1	MTR_2g091090	66.057	601	142	8	376	960	100	654	0.0	672

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54871.t1	AT5G27220	25.692	759	466	19	124	853	111	800	5.34e-13	73.9
MS.gene54871.t1	AT5G27220	25.692	759	466	19	124	853	111	800	5.34e-13	73.9
MS.gene54871.t1	AT5G27220	25.692	759	466	19	124	853	111	800	6.12e-13	73.9
MS.gene54871.t1	AT5G27220	25.692	759	466	19	124	853	111	800	6.12e-13	73.9
MS.gene54871.t1	AT5G48385	28.485	165	111	2	798	959	296	456	3.78e-12	70.5
MS.gene54871.t1	AT5G16320	27.041	196	137	4	766	959	170	361	6.03e-11	66.6

Showing 1 to 6 of 6 entries

Previous1Next

Find 152 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCATTTCAAATAT+TGG	0.196470	2.1:-9899237	MS.gene54871:CDS
AAAAGTTACTGAATGTATTT+TGG	0.139554	2.1:-9899995	MS.gene54871:CDS
AAAAGTTGAAATGAAGGAAG+AGG	0.482754	2.1:-9900037	MS.gene54871:CDS
AAAATTGCCGTCGAGCTGTT+TGG	0.394857	2.1:-9896901	MS.gene54871:CDS
AAACTCTGTTTGCAAAACCC+AGG	0.606810	2.1:+9896875	None:intergenic
AAAGAAGCATTTCAAATATT+GGG	0.293336	2.1:-9899236	MS.gene54871:CDS
AAATACTGAAAATTCTTTGG+CGG	0.480429	2.1:-9897019	MS.gene54871:CDS
AAATGAAGGAAGAGGAACTC+AGG	0.538991	2.1:-9900029	MS.gene54871:CDS
AACACAAGCGAGAAAACTGA+CGG	0.647061	2.1:-9897288	MS.gene54871:CDS
AACAGAAACAATTTGAAGGA+CGG	0.564168	2.1:-9898637	MS.gene54871:CDS

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTGAAATGAAGGAAG+AGG	-	chr2.1:9896422-9896441	MS.gene54871:intron	30.0%
AACAGAAACAATTTGAAGGA+CGG	-	chr2.1:9897822-9897841	MS.gene54871:intron	30.0%
ACAATTTGAATCAAAGGAGA+AGG	-	chr2.1:9896788-9896807	MS.gene54871:intron	30.0%
AGAATTTGAATCAAAGGAGA+AGG	-	chr2.1:9897166-9897185	MS.gene54871:CDS	30.0%
AGATGAAGAAGAACATTTAC+CGG	+	chr2.1:9898023-9898042	None:intergenic	30.0%
ATAGCAACTTAACTGAATCA+AGG	+	chr2.1:9898464-9898483	None:intergenic	30.0%
ATATTCTGACAAACATTGTG+GGG	-	chr2.1:9898368-9898387	MS.gene54871:intron	30.0%
ATCAAACTCCATTGAAATCA+AGG	-	chr2.1:9900256-9900275	MS.gene54871:CDS	30.0%
ATCCACCATAAATGATAAAC+TGG	+	chr2.1:9899730-9899749	None:intergenic	30.0%
ATGTAGTTTGGAGAAATTTG+TGG	-	chr2.1:9899748-9899767	MS.gene54871:CDS	30.0%

Showing 1 to 10 of 260 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	9895952	9900529	9895952	ID=MS.gene54871
chr2.1	mRNA	9895952	9900529	9895952	ID=MS.gene54871.t1;Parent=MS.gene54871
chr2.1	exon	9898459	9900529	9898459	ID=MS.gene54871.t1.exon1;Parent=MS.gene54871.t1
chr2.1	CDS	9898459	9900529	9898459	ID=cds.MS.gene54871.t1;Parent=MS.gene54871.t1
chr2.1	exon	9896872	9897369	9896872	ID=MS.gene54871.t1.exon2;Parent=MS.gene54871.t1
chr2.1	CDS	9896872	9897369	9896872	ID=cds.MS.gene54871.t1;Parent=MS.gene54871.t1
chr2.1	exon	9896204	9896376	9896204	ID=MS.gene54871.t1.exon3;Parent=MS.gene54871.t1
chr2.1	CDS	9896204	9896376	9896204	ID=cds.MS.gene54871.t1;Parent=MS.gene54871.t1
chr2.1	exon	9895952	9896092	9895952	ID=MS.gene54871.t1.exon4;Parent=MS.gene54871.t1
chr2.1	CDS	9895952	9896092	9895952	ID=cds.MS.gene54871.t1;Parent=MS.gene54871.t1

Gene Sequence

>MS.gene54871

ATGATGGATGTTGAGGCTTCTTATACGCCGAAAATTTGTGGTGGTGATGACGATGTGAAGAAGGAACCTGCTTCTTGTCAAGACTTTGATTCAAGTTTGAGAACATGTAGTAGTAAATGTGATACTGATGCACTGCCAGTTAAGAGGCTGTTTGATAACAGCAGTTCCTTGGATGTTTCTGTTAAGAAATCAAAGGCGTCGCCGTATGATGATCAGGGAAAAGATGGAGATGGTATTCTGCCGACAAGTACAACTAAAAAGCCGAGCAAATCAGCTGATGAATCATTTTCCTCGCTGATGAAAGAACTTCAATTGGTACAAAAGTCGTTTAAGAAGTGCAAAAGGAAGAGGCAAGTGGAAAAAGGGAGATTGCAGTCCATCAAGAAAGATATTGAAGAGTGCAGCAAAGAGCTTGAAGATAAGAACCAGCTAGTTAGCTGTGTTAATGAAATTCACGACAAAATGCAGGAAAAAGTTGAAATGAAGGAAGAGGAACTCAGGGCGCTTTCCCAAAAAGTTACTGAATGTATTTTGGAACTTAAGACCAAAGAGGAAGATCTTGATGCAGTGAACAAATTAATTAGTGAAGAAACAGAAAAATTAGAGTCAACAAGGAAGAAGTTGATAAATATAAGATCAGAAATGAAGAATAGCTGTGCTTTAATGAAGGAATTTGAGTCAAAGCAGAAGCAAATTAAAGGTCGGGTTAAGGAACTCGAGTCAAAAGAGAAGCAGTGTGAAGGACGAGTGGAGGAGCTTCAGTCAAAGGAGAAGGACTTTGAGGAAAGGGTAAAGAAGCTAGAGTCAAGAGAGAAGCAGCTTGAAGTCCATGTGAAACAATTTGAATCAAAGGAGAAGGAACTTGAAGGTCATATGAATGAGCTTCAATCAGAAAACCAACATTTCAAAAATCGGGTGGAGGAGCTTGATGCAAAAGAGAGGCAAGTTGAAGGACGGGCAATGGAGCTAGAGACAAAAGAGATGCAACATAAAGACCAGGTGAAGGTGTTTGAATCAAAAGAGAAGCATTTCAAAAACCGAATGAAGGAGCTTGAGTCAAAAGAGAAGAATTCCAAAGGTCAGGTGAAGGAGTTGGAATTTAAAAAGAAACGCATTGAAAGGCAAATGAAGGAGCTTGAGTCAAAAGAGAAGCACTTTGAGGAACGGGTAAAGAAGCTGGAGTCAAGAGAGAGGCAGTTTGAAGTCCGTGTGAAAGAATTTGAATCAAAGGAGAAGGTACTTGAAGGTCATACGAATGAGCTTGAATCAAAAAAGAAGCATTTCAAATATTGGGTGAAGGAGCATGATGCAAAAGTAAGGAAAGTTGAAGGACGAGCAATGGAGCTAGAGACAAAAGAGATGCAACATAAAGACCAGGTGAAGGTGTTTGAATCAAAAGAGAAAGATTTTGAGTGCCAAATGAAGGAGCTTCAGTTAAAAGAGAAGCAACTTGAAGGCCGATTGATGGAGCATGAGTCAAAGGAGAAGAAATTTGAAGGCCGTATGAAGGAGATGGACTCTGAAGAGAAGCATGTTAAAAGCATGGTGGAGGAGCTCAAATCAAAATTGAGGCCATTGAAAGGACAACTTCAAGAACTTGACTCTAAAGAGAAGCAACTTGATGTCCAAGTGAAGGAGCTGGAATCTAAAAACAGACACTTTGAAAGACAAGTGAAGGAGTTTGAATCAGAAAAGACGGAATTTGAAGGCCAAATGATGGACTTGCTATTAAAAGAGAAGCATGTTGAAAACCAAATGAAGGAGTTTGAGTCAAAAATGGAGAAATTTGAAGAACAAGTTAAATCGAAGGAGAAAGAACTCGAATCTAAAAATAAGCATTTTGAAAGACAGGTTGAGGACTTCAAATCAAAACAGAAACAATTTGAAGGACGGTTGAATGAACTGGAGTCGGAAGAGTATAAGTTCAAAGTAAAGGTGAAGGAGCTCAACTTAAAAGAAAAGCAGTTTGAAGGACAAGTCAAGGATCCTAAGTCAAAGCTGAATAAATTTGATGGACAACCAAAGGAGCCTGAGTCAAGGAAAAAATATATTGACGAGAAAAAAGAATCCGGTAAATGTTCTTCTTCATCTAGATTATTGAAATAATTTTATTATAACTGTTCCTTTTAATGATGATGATATTTTTTTATATCCTGATCTACTTCATTCTTTAAACACGTTTTTACTCATGTTAATGCTTTTCCAGATTCTCCAGATTTCATATCACACCCAGACTTTCAAACAAATCTGAATTATATTTTTACCCTTGAACATTTTATGTATCTCTTAAGTGAAAAACCTCATGTGTTTTTTATCCATGGCTATGGTTTTATTATAATATTATGGTACTGCTAATGAAAGATTAGTATATTAATGTAGTTTTAATTTTTCAAGTATATTGCAAAAACTGTGTTCAATATTCTGACAAACATTGTGGGGCACTTAATAGTCCTATTAGTGCAACTATTAATAGTCTTGCTTATTAATCAATGAAATCTAACACTTTCTACCTTGATTCAGTTAAGTTGCTATTGTTGACATTGATTGTAACTGTTAGTATAATGCTTTCTCTATCATCCATCTATTTCATAATTTGATGGGCTAAGTCTGCATTAACCCAACAGTAGAAAGTATATTTATGAGTTAATGAACAAAAAACTTATCTAAAATATTTCGGTCATATGTTGTAAATTTTATGGCTTCTGTTTTTGTCTAGACTCTCGAGTCTCAAGTAACAAGCAAATATAAGCAGTACTTATATTGCACAACCACGTAAAAAGGTGTGAAAAATTTGTCATTGTTTTACAAGTGGATGATATAAAGCCTAGATTGCAGTGAAAAAGGATTTTAGAGAAAATGCTATCTAGTTTTGTATAACATGGCAGGCTGGTCATATAATATTTTCCGATGAAGAACTTGTTTATCAATGACCAGCATTCAACTTCAGAGCTTGTTCCATGACTTTCCCTAGATTATCTGTAACACTCAACACCAGCATCCAACATCTTTTCTCGCCAAGATCTAGTTCATTCCAATATTTAGTATTAATGCAGCCGTAACTCATCAATGTCCTATGTCTTACATTCTTGCATGTATATTTTTTCTTTTTTAAATTCTTATTGTCTCTATCATTTACTGATGTTTCTATCAAAATATGCAGTTGCATCTTACATGCATGATCAATCAAGTCGTGCCTTTGGTGGAACAAGTTTGCAATTGAACACAAGCGAGAAAACTGACGGAGTTCAATCTCTTTACAATGGTATTTTAGTTAATCTGCAAGAATCATCAGATCCATCAAAACTTGTTTTGGAAATGATACAGAACCCCATCACTCCACTTTGTCAAAAGGGAGATAATGTTGTGATTATTGCTGATTACCAAATCTATCTATTAGAGCAACTGATGAGAATCTCACCAGTTATTGAACCTTGTGTGAGAAAAAAAGCATTGAAGCTAGCATTTGATTTGAAGGCCAAGATGAAAGAAAATACTGAAAATTCTTTGGCGGTTCTTGGTTTTCTACTGCTTTTGTCAATTTATAAATTGCTTGATTCGTTTGATAAAGATGAAGTTTTCGAGCTTTTGGCATTTGTTGCTCTGCACAAAATTGCCGTCGAGCTGTTTGGAAGCCTGGGTTTTGCAAACAGAGTTTCTGGTATGTTGATTTAGATAAGCTTTCGATATTTTTTCATGATTATCAAATCAAATGAGTTCGGGTCTGTTGTTACATTCCCTGCCATTCCTATTTGCAGTCAGGATGAGGTGGTTTTACCCAGTTTATCATTTATGGTGGATGTAGTTTGGAGAAATTTGTGGTGAATTGCGATCCATAAACAGTATGAAATTGAACTGATATGTAATTGGCTTCATTTTGTTTCCCCAACAGATCTCACATTTGTTACGAGAAAATTGACATCTTGGTTTTAATGCTTTGAAAATGAAATAGACTTGAAATTTATCTCTCTCTTTTTATGTAGGGTAGCACTTGGGTGACATAGCATGCTACCCTTTTATGTATCTCTTCTATTTTCTAAATGGTTTGACAAATTATGAAATGTTCAGTTCAACCTGCTTAGTTTTTATAATTTTTTTTAACTTTGATGTCTGTTCTAGTACGTTTTGATGAAGTGAAATTTCTTGCATCTTGCAGATTTTGTTAAGCATCTTATCAAGAGGAAGCAAACTGTTGCAGCTGTTAAATTCAGTTTTGCATATGACTTGGATGACAAGGATCATTTAGTTGATATGTTGCGAGAATACGTCAAAAATGCCAAACTAATTTGTGAGAGCAGTTGCAAGAAATCAAACTCCATTGAAATCAAGGTTCTTCTGTTTTTCTTATTGAAATTTTATTTAATCAAACCTTCCATTCCATATTCACAATACCCTTGCATGATAGTTATAAATAAACTGTTACTATGTACTTGAACTCAGGATAAGGCCAGAGATGAAGAAATTGCTAGTATTGGGACTGTTCTGCAATGCATTTCTGACAGCAACCTTGAATCTACGGGTCTGCTTCATAAGGAGATTGAATATCGTATTCTTGAGCTAAAAGCACATAAAGGCTATTAG

Protein sequence

>MS.gene54871.t1

MMDVEASYTPKICGGDDDVKKEPASCQDFDSSLRTCSSKCDTDALPVKRLFDNSSSLDVSVKKSKASPYDDQGKDGDGILPTSTTKKPSKSADESFSSLMKELQLVQKSFKKCKRKRQVEKGRLQSIKKDIEECSKELEDKNQLVSCVNEIHDKMQEKVEMKEEELRALSQKVTECILELKTKEEDLDAVNKLISEETEKLESTRKKLINIRSEMKNSCALMKEFESKQKQIKGRVKELESKEKQCEGRVEELQSKEKDFEERVKKLESREKQLEVHVKQFESKEKELEGHMNELQSENQHFKNRVEELDAKERQVEGRAMELETKEMQHKDQVKVFESKEKHFKNRMKELESKEKNSKGQVKELEFKKKRIERQMKELESKEKHFEERVKKLESRERQFEVRVKEFESKEKVLEGHTNELESKKKHFKYWVKEHDAKVRKVEGRAMELETKEMQHKDQVKVFESKEKDFECQMKELQLKEKQLEGRLMEHESKEKKFEGRMKEMDSEEKHVKSMVEELKSKLRPLKGQLQELDSKEKQLDVQVKELESKNRHFERQVKEFESEKTEFEGQMMDLLLKEKHVENQMKEFESKMEKFEEQVKSKEKELESKNKHFERQVEDFKSKQKQFEGRLNELESEEYKFKVKVKELNLKEKQFEGQVKDPKSKLNKFDGQPKEPESRKKYIDEKKESVASYMHDQSSRAFGGTSLQLNTSEKTDGVQSLYNGILVNLQESSDPSKLVLEMIQNPITPLCQKGDNVVIIADYQIYLLEQLMRISPVIEPCVRKKALKLAFDLKAKMKENTENSLAVLGFLLLLSIYKLLDSFDKDEVFELLAFVALHKIAVELFGSLGFANRVSDFVKHLIKRKQTVAAVKFSFAYDLDDKDHLVDMLREYVKNAKLICESSCKKSNSIEIKDKARDEEIASIGTVLQCISDSNLESTGLLHKEIEYRILELKAHKGY