Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55025.t1 | AES80607.2 | 98.5 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 3.70E-186 | 660.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55025.t1 | Q8LFD1 | 69.6 | 322 | 87 | 3 | 2 | 323 | 53 | 363 | 5.0e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55025.t1 | G7KV76 | 98.5 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 2.7e-186 | 660.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050478 | MS.gene55025 | 0.849208 | 3.75E-60 | -1.69E-46 |
| MS.gene050546 | MS.gene55025 | 0.840593 | 7.92E-58 | -1.69E-46 |
| MS.gene050787 | MS.gene55025 | 0.852298 | 5.06E-61 | -1.69E-46 |
| MS.gene050959 | MS.gene55025 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene55025 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene55025 | 0.808599 | 2.86E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene55025 | 0.827391 | 1.61E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene55025 | 0.847129 | 1.41E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55025.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 25 | 348 | 0.0 | 667 |
| MS.gene55025.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 0.0 | 667 |
| MS.gene55025.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 49 | 372 | 0.0 | 666 |
| MS.gene55025.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 19 | 342 | 0.0 | 665 |
| MS.gene55025.t1 | MTR_5g005730 | 85.802 | 324 | 44 | 1 | 1 | 324 | 3 | 324 | 0.0 | 564 |
| MS.gene55025.t1 | MTR_1g109430 | 70.175 | 285 | 77 | 1 | 7 | 291 | 26 | 302 | 3.90e-156 | 440 |
| MS.gene55025.t1 | MTR_1g109430 | 70.175 | 285 | 77 | 1 | 7 | 291 | 33 | 309 | 4.02e-156 | 440 |
| MS.gene55025.t1 | MTR_1g109430 | 72.201 | 259 | 72 | 0 | 7 | 265 | 26 | 284 | 5.46e-145 | 410 |
| MS.gene55025.t1 | MTR_1g109430 | 66.316 | 285 | 71 | 2 | 7 | 291 | 26 | 285 | 1.79e-142 | 405 |
| MS.gene55025.t1 | MTR_1g109400 | 66.090 | 289 | 97 | 1 | 2 | 289 | 3 | 291 | 1.54e-136 | 390 |
| MS.gene55025.t1 | MTR_1g109430 | 74.561 | 228 | 58 | 0 | 7 | 234 | 26 | 253 | 3.68e-132 | 377 |
| MS.gene55025.t1 | MTR_3g031780 | 55.674 | 282 | 124 | 1 | 11 | 291 | 4 | 285 | 4.25e-117 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 22 | 332 | 1.01e-169 | 474 |
| MS.gene55025.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 53 | 363 | 1.83e-169 | 475 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 18 | 309 | 1.85e-146 | 415 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 3 | 294 | 1.86e-146 | 414 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 3 | 294 | 1.86e-146 | 414 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 31 | 322 | 1.95e-146 | 416 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 31 | 322 | 1.95e-146 | 416 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene55025.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene55025.t1 | AT1G15080 | 64.931 | 288 | 100 | 1 | 2 | 288 | 3 | 290 | 4.41e-137 | 390 |
| MS.gene55025.t1 | AT3G18220 | 55.705 | 298 | 131 | 1 | 2 | 298 | 3 | 300 | 4.07e-115 | 335 |
Find 73 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTGAGCTTCTGTTAAT+TGG | 0.145398 | 7.2:+24501760 | None:intergenic |
| GGGGTCCTTATGCTTATTTC+AGG | 0.182541 | 7.2:-24501851 | MS.gene55025:CDS |
| TATCACTGCCGTTACTAAAA+TGG | 0.287109 | 7.2:+24503113 | None:intergenic |
| CACTGGACGGACGTGTTTGC+TGG | 0.292931 | 7.2:-24502509 | MS.gene55025:CDS |
| GGGTTAACTTTAACAGGAAA+TGG | 0.302168 | 7.2:-24501702 | MS.gene55025:CDS |
| TGCATGGGGTTAACTTTAAC+AGG | 0.309244 | 7.2:-24501708 | MS.gene55025:CDS |
| GTGTTTGCTGGAGGTCTTAT+AGG | 0.312795 | 7.2:-24502497 | MS.gene55025:intron |
| CTACTTGCTGCATCACTTGT+TGG | 0.326071 | 7.2:-24502560 | MS.gene55025:CDS |
| TCATAGTGTGTGCGCCAAGC+TGG | 0.341574 | 7.2:+24503613 | None:intergenic |
| TTAGAAGATGATCTTGAATC+TGG | 0.345661 | 7.2:-24501663 | MS.gene55025:CDS |
| CAAGCTCCTAATGCTCAAAA+TGG | 0.345881 | 7.2:-24501801 | MS.gene55025:CDS |
| ATATATGCAGGGTCATTTGC+TGG | 0.361065 | 7.2:-24502674 | MS.gene55025:intron |
| TGATCTTCATCATGCTGTAT+TGG | 0.367907 | 7.2:-24503254 | MS.gene55025:CDS |
| AACTTGAGCTTCTGTTAATT+GGG | 0.374106 | 7.2:+24501761 | None:intergenic |
| GATCTTCATCATGCTGTATT+GGG | 0.375813 | 7.2:-24503253 | MS.gene55025:intron |
| GACCTCGACCAGACTTCTTC+TGG | 0.383443 | 7.2:-24503062 | MS.gene55025:CDS |
| CATGGTGACTTTGTCCCTCC+TGG | 0.390021 | 7.2:+24501733 | None:intergenic |
| AGAGTAATACAGTTCCTGTC+TGG | 0.394603 | 7.2:-24503440 | MS.gene55025:CDS |
| TATCCATTCTATCGCTTTGT+TGG | 0.395127 | 7.2:-24503498 | MS.gene55025:CDS |
| AATGCTACATACATGAAGTA+TGG | 0.396744 | 7.2:+24502841 | None:intergenic |
| CTAAAACACATATTCATGAT+TGG | 0.400977 | 7.2:-24503569 | MS.gene55025:CDS |
| TCATCTTCTAATGTTGAAGT+TGG | 0.410419 | 7.2:+24501675 | None:intergenic |
| AAATGGTAATCAAGCACAAT+TGG | 0.419067 | 7.2:-24501784 | MS.gene55025:CDS |
| GCAGGGTCATTTGCTGGTCT+AGG | 0.424510 | 7.2:-24502668 | MS.gene55025:intron |
| ATCCATTCTATCGCTTTGTT+GGG | 0.441748 | 7.2:-24503497 | MS.gene55025:CDS |
| CAAAGTCACCATGGGTGCAT+GGG | 0.441793 | 7.2:-24501723 | MS.gene55025:CDS |
| ATACATACATCCTTTCCATC+TGG | 0.450466 | 7.2:+24503030 | None:intergenic |
| GGTTAACTTTAACAGGAAAT+GGG | 0.459120 | 7.2:-24501701 | MS.gene55025:CDS |
| TTCCCAACAAAGCGATAGAA+TGG | 0.464974 | 7.2:+24503495 | None:intergenic |
| CATAGTGTGTGCGCCAAGCT+GGG | 0.465906 | 7.2:+24503614 | None:intergenic |
| TACATGAAGTATGGCCGCTT+GGG | 0.467697 | 7.2:+24502850 | None:intergenic |
| ACAAAGTCACCATGGGTGCA+TGG | 0.472421 | 7.2:-24501724 | MS.gene55025:CDS |
| GATCATAGATGTCTCTCCTT+CGG | 0.475629 | 7.2:+24503272 | None:intergenic |
| GGCATACCTTCATGATGATA+AGG | 0.477176 | 7.2:+24502317 | None:intergenic |
| CCTCCTCCTTATCATCATGA+AGG | 0.477395 | 7.2:-24502323 | MS.gene55025:intron |
| TTATGCTTATTTCAGGATGT+TGG | 0.479824 | 7.2:-24501844 | MS.gene55025:CDS |
| AAACATCGCCAGAAGAAGTC+TGG | 0.485111 | 7.2:+24503054 | None:intergenic |
| ATTCTATCGCTTTGTTGGGA+AGG | 0.490451 | 7.2:-24503493 | MS.gene55025:CDS |
| AACATCCTGAAATAAGCATA+AGG | 0.499943 | 7.2:+24501846 | None:intergenic |
| ATACATGAAGTATGGCCGCT+TGG | 0.512014 | 7.2:+24502849 | None:intergenic |
| AGAAGCTCAAGTTGAGAACC+AGG | 0.515071 | 7.2:-24501751 | MS.gene55025:CDS |
| AGGCAGATGGAAGCCCAGCT+TGG | 0.522915 | 7.2:-24503627 | None:intergenic |
| TTGATGACTACTGGCACCAC+TGG | 0.523537 | 7.2:-24502526 | MS.gene55025:CDS |
| TTCTTGTTATTTATATCCGA+AGG | 0.524237 | 7.2:-24503288 | MS.gene55025:CDS |
| TGGTGACGAGAGTGTCATAA+AGG | 0.524449 | 7.2:-24502889 | MS.gene55025:CDS |
| GAGTAATACAGTTCCTGTCT+GGG | 0.535025 | 7.2:-24503439 | MS.gene55025:CDS |
| TCTCTCGAGTTGATGACTAC+TGG | 0.560824 | 7.2:-24502535 | MS.gene55025:CDS |
| TAGAAGATGATCTTGAATCT+GGG | 0.561142 | 7.2:-24501662 | MS.gene55025:CDS |
| CGCCAGAAGAAGTCTGGTCG+AGG | 0.581407 | 7.2:+24503060 | None:intergenic |
| GATGCAATAAAAGATGCAGT+AGG | 0.581427 | 7.2:-24503087 | MS.gene55025:CDS |
| AAGTTAACCCCATGCACCCA+TGG | 0.581980 | 7.2:+24501715 | None:intergenic |
| CTTACAGGAACAGCCCAGAC+AGG | 0.583384 | 7.2:+24503426 | None:intergenic |
| TGACTACTGGCACCACTGGA+CGG | 0.584322 | 7.2:-24502522 | MS.gene55025:CDS |
| ATAACAAGAAAGATCACGAT+AGG | 0.584726 | 7.2:+24503301 | None:intergenic |
| GGAACTGTATTACTCTTCAG+TGG | 0.586540 | 7.2:+24503447 | None:intergenic |
| GCACACACTATGAGATCTCA+TGG | 0.591405 | 7.2:-24503603 | MS.gene55025:CDS |
| CAGCAAACACGTCCGTCCAG+TGG | 0.591682 | 7.2:+24502510 | None:intergenic |
| CTAAAAGCATTTGATCGCAA+AGG | 0.593115 | 7.2:-24502617 | MS.gene55025:CDS |
| CCTTCATGATGATAAGGAGG+AGG | 0.598516 | 7.2:+24502323 | None:intergenic |
| GACGAGAGTGTCATAAAGGA+AGG | 0.604424 | 7.2:-24502885 | MS.gene55025:CDS |
| TTGGGAGATGTCATTTGTCA+TGG | 0.606969 | 7.2:-24502909 | MS.gene55025:CDS |
| ACAAGTGATGCAGCAAGTAG+AGG | 0.607599 | 7.2:+24502563 | None:intergenic |
| ACATGATTTCAATAAATACA+AGG | 0.608273 | 7.2:+24503532 | None:intergenic |
| ATGCAATAAAAGATGCAGTA+GGG | 0.614450 | 7.2:-24503086 | MS.gene55025:CDS |
| AAAGTCACCATGGGTGCATG+GGG | 0.620064 | 7.2:-24501722 | MS.gene55025:CDS |
| TGGACGGACGTGTTTGCTGG+AGG | 0.637391 | 7.2:-24502506 | MS.gene55025:CDS |
| CAGGAGGGACAAAGTCACCA+TGG | 0.646229 | 7.2:-24501732 | MS.gene55025:CDS |
| AGGAGGGACAAAGTCACCAT+GGG | 0.651663 | 7.2:-24501731 | MS.gene55025:CDS |
| ATACCTTCATGATGATAAGG+AGG | 0.657232 | 7.2:+24502320 | None:intergenic |
| GCTCAAGTTGAGAACCAGGA+GGG | 0.662360 | 7.2:-24501747 | MS.gene55025:CDS |
| AGGATGTTGGAAGAAACTAG+AGG | 0.720006 | 7.2:-24501831 | MS.gene55025:CDS |
| AGCTCAAGTTGAGAACCAGG+AGG | 0.720823 | 7.2:-24501748 | MS.gene55025:CDS |
| GGACATAAGAGTTTCCCAAG+CGG | 0.755590 | 7.2:-24502864 | MS.gene55025:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATGTATTACATAATAA+TGG | - | chr7.2:24503195-24503214 | MS.gene55025:intron | 10.0% |
| !! | TATATGTATTACATAATAAT+GGG | - | chr7.2:24503196-24503215 | MS.gene55025:intron | 10.0% |
| !! | ATATGTATTACATAATAATG+GGG | - | chr7.2:24503197-24503216 | MS.gene55025:intron | 15.0% |
| !!! | AAAAGTAGTTTTTCTATTTT+TGG | + | chr7.2:24502851-24502870 | None:intergenic | 15.0% |
| !!! | TTTTAGGTTTATGATAAATT+GGG | - | chr7.2:24502347-24502366 | MS.gene55025:CDS | 15.0% |
| !!! | TTTTTAGGTTTATGATAAAT+TGG | - | chr7.2:24502346-24502365 | MS.gene55025:CDS | 15.0% |
| !! | AATTCCAATTTATATATGCA+GGG | - | chr7.2:24502589-24502608 | MS.gene55025:CDS | 20.0% |
| !! | ACATGATTTCAATAAATACA+AGG | + | chr7.2:24501745-24501764 | None:intergenic | 20.0% |
| !! | AGAAATAAGAACTATAGATA+TGG | - | chr7.2:24503220-24503239 | MS.gene55025:intron | 20.0% |
| !! | GATAATATTGCATAATGTAT+TGG | - | chr7.2:24502996-24503015 | MS.gene55025:intron | 20.0% |
| !! | TTCATATTTGACATAATTCA+TGG | - | chr7.2:24503243-24503262 | MS.gene55025:intron | 20.0% |
| !!! | AAGATTTTATTTTCTGGTAT+AGG | - | chr7.2:24502127-24502146 | MS.gene55025:intron | 20.0% |
| !!! | ATTGTTAATGACTTCTTTTT+AGG | - | chr7.2:24502331-24502350 | MS.gene55025:CDS | 20.0% |
| ! | AACTAAAAACCTAAAATTCG+AGG | + | chr7.2:24502271-24502290 | None:intergenic | 25.0% |
| ! | ATATTATCTACAACATCAGA+TGG | + | chr7.2:24503383-24503402 | None:intergenic | 25.0% |
| ! | CAATGTTAGAGTAATTATTC+AGG | + | chr7.2:24501915-24501934 | None:intergenic | 25.0% |
| ! | CAATTCCAATTTATATATGC+AGG | - | chr7.2:24502588-24502607 | MS.gene55025:CDS | 25.0% |
| ! | CTAAAACACATATTCATGAT+TGG | - | chr7.2:24501705-24501724 | MS.gene55025:CDS | 25.0% |
| ! | TAATTAAGTTTCACGAGAAA+TGG | - | chr7.2:24502496-24502515 | MS.gene55025:intron | 25.0% |
| !! | AACATTGTCTTTTACTATCA+TGG | - | chr7.2:24501928-24501947 | MS.gene55025:intron | 25.0% |
| !! | AATATATTGTTATTCTCTGC+AGG | - | chr7.2:24503398-24503417 | MS.gene55025:intron | 25.0% |
| !! | TAGAAAAAAGGTGTATAATG+AGG | + | chr7.2:24503094-24503113 | None:intergenic | 25.0% |
| !! | TGTTTGTTTGATAGATTTTC+TGG | - | chr7.2:24502293-24502312 | MS.gene55025:intron | 25.0% |
| !! | TTTTTATCATTGTACTTAGC+TGG | - | chr7.2:24502630-24502649 | MS.gene55025:CDS | 25.0% |
| !!! | AAACTACTTTTAGTGTTTGT+TGG | - | chr7.2:24502860-24502879 | MS.gene55025:CDS | 25.0% |
| !!! | ATTATACACCTTTTTTCTAG+AGG | - | chr7.2:24503095-24503114 | MS.gene55025:CDS | 25.0% |
| !!! | CAACTTGGTAATTTTTTTAC+AGG | + | chr7.2:24503318-24503337 | None:intergenic | 25.0% |
| !!! | GATGACAAGATTTTATTTTC+TGG | - | chr7.2:24502121-24502140 | MS.gene55025:intron | 25.0% |
| !!! | TTCTTGTTATTTATATCCGA+AGG | - | chr7.2:24501986-24502005 | MS.gene55025:intron | 25.0% |
| AAATGGTAATCAAGCACAAT+TGG | - | chr7.2:24503490-24503509 | MS.gene55025:CDS | 30.0% | |
| AACATCCTGAAATAAGCATA+AGG | + | chr7.2:24503431-24503450 | None:intergenic | 30.0% | |
| AACTTGAGCTTCTGTTAATT+GGG | + | chr7.2:24503516-24503535 | None:intergenic | 30.0% | |
| AATCTTGTCATCCACTTTAA+CGG | + | chr7.2:24502113-24502132 | None:intergenic | 30.0% | |
| AATGCTACATACATGAAGTA+TGG | + | chr7.2:24502436-24502455 | None:intergenic | 30.0% | |
| ACTAATTGAGATGCGATAAA+TGG | + | chr7.2:24502808-24502827 | None:intergenic | 30.0% | |
| ATAACAAGAAAGATCACGAT+AGG | + | chr7.2:24501976-24501995 | None:intergenic | 30.0% | |
| ATCTTAATCAGCAAACTTAC+AGG | + | chr7.2:24501866-24501885 | None:intergenic | 30.0% | |
| ATGACCCTGCATATATAAAT+TGG | + | chr7.2:24502596-24502615 | None:intergenic | 30.0% | |
| ATGCAATAAAAGATGCAGTA+GGG | - | chr7.2:24502188-24502207 | MS.gene55025:intron | 30.0% | |
| ATTACACTAAGTTATGAGCA+TGG | + | chr7.2:24502480-24502499 | None:intergenic | 30.0% | |
| ATTGCATACCTAGATACATA+CGG | - | chr7.2:24503147-24503166 | MS.gene55025:intron | 30.0% | |
| CAGAACTAAATTCATCAACT+TGG | + | chr7.2:24503333-24503352 | None:intergenic | 30.0% | |
| GGTTAACTTTAACAGGAAAT+GGG | - | chr7.2:24503573-24503592 | MS.gene55025:CDS | 30.0% | |
| TAGAAGATGATCTTGAATCT+GGG | - | chr7.2:24503612-24503631 | MS.gene55025:CDS | 30.0% | |
| TAGCATTTACTACTTATGAC+TGG | - | chr7.2:24502449-24502468 | MS.gene55025:intron | 30.0% | |
| TATGTATCTAGGTATGCAAT+TGG | + | chr7.2:24503147-24503166 | None:intergenic | 30.0% | |
| TATGTGAGATTTCTTCTTTC+AGG | - | chr7.2:24502891-24502910 | MS.gene55025:CDS | 30.0% | |
| TCATCTTCTAATGTTGAAGT+TGG | + | chr7.2:24503602-24503621 | None:intergenic | 30.0% | |
| TTAGAAGATGATCTTGAATC+TGG | - | chr7.2:24503611-24503630 | MS.gene55025:CDS | 30.0% | |
| TTATGCTTATTTCAGGATGT+TGG | - | chr7.2:24503430-24503449 | MS.gene55025:intron | 30.0% | |
| ! | ACAAACTCTATTTGCTAAAC+TGG | - | chr7.2:24502085-24502104 | MS.gene55025:intron | 30.0% |
| ! | GTATGTATTCCTCGAATTTT+AGG | - | chr7.2:24502259-24502278 | MS.gene55025:intron | 30.0% |
| ! | TGATTACCATTTTGAGCATT+AGG | + | chr7.2:24503482-24503501 | None:intergenic | 30.0% |
| !! | ACTGTTCTCCATTTTAGTAA+CGG | - | chr7.2:24502153-24502172 | MS.gene55025:intron | 30.0% |
| !! | TTGATAGATTTTCTGGTCAA+AGG | - | chr7.2:24502300-24502319 | MS.gene55025:intron | 30.0% |
| !! | TTTAGTTCTGTTCTGAACTA+TGG | - | chr7.2:24503343-24503362 | MS.gene55025:intron | 30.0% |
| AAGGTGTATAATGAGGTGAA+AGG | + | chr7.2:24503087-24503106 | None:intergenic | 35.0% | |
| AGGTTCAAAGCAGATGTAAA+TGG | + | chr7.2:24503067-24503086 | None:intergenic | 35.0% | |
| ATACATACATCCTTTCCATC+TGG | + | chr7.2:24502247-24502266 | None:intergenic | 35.0% | |
| ATACCTTCATGATGATAAGG+AGG | + | chr7.2:24502957-24502976 | None:intergenic | 35.0% | |
| CAACTTGAGCTTCTGTTAAT+TGG | + | chr7.2:24503517-24503536 | None:intergenic | 35.0% | |
| GATCTTCATCATGCTGTATT+GGG | - | chr7.2:24502021-24502040 | MS.gene55025:intron | 35.0% | |
| GATGCAATAAAAGATGCAGT+AGG | - | chr7.2:24502187-24502206 | MS.gene55025:intron | 35.0% | |
| GGGTTAACTTTAACAGGAAA+TGG | - | chr7.2:24503572-24503591 | MS.gene55025:CDS | 35.0% | |
| TAAGTTTCACGAGAAATGGA+TGG | - | chr7.2:24502500-24502519 | MS.gene55025:CDS | 35.0% | |
| TATCACTGCCGTTACTAAAA+TGG | + | chr7.2:24502164-24502183 | None:intergenic | 35.0% | |
| TATCCATTCTATCGCTTTGT+TGG | - | chr7.2:24501776-24501795 | MS.gene55025:CDS | 35.0% | |
| TGATCTTCATCATGCTGTAT+TGG | - | chr7.2:24502020-24502039 | MS.gene55025:intron | 35.0% | |
| TTATCTAAGAGAATCTGCAG+AGG | + | chr7.2:24502981-24503000 | None:intergenic | 35.0% | |
| TTGCATACCTAGATACATAC+GGG | - | chr7.2:24503148-24503167 | MS.gene55025:intron | 35.0% | |
| ! | AGCCAAAACCTCTAGAAAAA+AGG | + | chr7.2:24503106-24503125 | None:intergenic | 35.0% |
| ! | ATCCATTCTATCGCTTTGTT+GGG | - | chr7.2:24501777-24501796 | MS.gene55025:CDS | 35.0% |
| ! | ATTGTTATTCTCTGCAGGTT+GGG | - | chr7.2:24503403-24503422 | MS.gene55025:intron | 35.0% |
| ! | TATTGTTATTCTCTGCAGGT+TGG | - | chr7.2:24503402-24503421 | MS.gene55025:intron | 35.0% |
| !! | CTAAAAGCATTTGATCGCAA+AGG | - | chr7.2:24502657-24502676 | MS.gene55025:CDS | 35.0% |
| !!! | CACCTTTTTTCTAGAGGTTT+TGG | - | chr7.2:24503101-24503120 | MS.gene55025:CDS | 35.0% |
| AATGTCTCCCGTATGTATCT+AGG | + | chr7.2:24503158-24503177 | None:intergenic | 40.0% | |
| AGAGTAATACAGTTCCTGTC+TGG | - | chr7.2:24501834-24501853 | MS.gene55025:CDS | 40.0% | |
| AGGATGTTGGAAGAAACTAG+AGG | - | chr7.2:24503443-24503462 | MS.gene55025:CDS | 40.0% | |
| ATATATGCAGGGTCATTTGC+TGG | - | chr7.2:24502600-24502619 | MS.gene55025:CDS | 40.0% | |
| CAAGCTCCTAATGCTCAAAA+TGG | - | chr7.2:24503473-24503492 | MS.gene55025:CDS | 40.0% | |
| CTAAACTGGAACCGTTAAAG+TGG | - | chr7.2:24502099-24502118 | MS.gene55025:intron | 40.0% | |
| GAGTAATACAGTTCCTGTCT+GGG | - | chr7.2:24501835-24501854 | MS.gene55025:CDS | 40.0% | |
| GATCATAGATGTCTCTCCTT+CGG | + | chr7.2:24502005-24502024 | None:intergenic | 40.0% | |
| GGAACTGTATTACTCTTCAG+TGG | + | chr7.2:24501830-24501849 | None:intergenic | 40.0% | |
| GGCATACCTTCATGATGATA+AGG | + | chr7.2:24502960-24502979 | None:intergenic | 40.0% | |
| TGCATGGGGTTAACTTTAAC+AGG | - | chr7.2:24503566-24503585 | MS.gene55025:CDS | 40.0% | |
| TTCCCAACAAAGCGATAGAA+TGG | + | chr7.2:24501782-24501801 | None:intergenic | 40.0% | |
| ! | ATTCTATCGCTTTGTTGGGA+AGG | - | chr7.2:24501781-24501800 | MS.gene55025:CDS | 40.0% |
| ! | TTGGGAGATGTCATTTGTCA+TGG | - | chr7.2:24502365-24502384 | MS.gene55025:intron | 40.0% |
| ! | TTGTTATTCTCTGCAGGTTG+GGG | - | chr7.2:24503404-24503423 | MS.gene55025:intron | 40.0% |
| AAACATCGCCAGAAGAAGTC+TGG | + | chr7.2:24502223-24502242 | None:intergenic | 45.0% | |
| ACAAGTGATGCAGCAAGTAG+AGG | + | chr7.2:24502714-24502733 | None:intergenic | 45.0% | |
| ATACATGAAGTATGGCCGCT+TGG | + | chr7.2:24502428-24502447 | None:intergenic | 45.0% | |
| CCTCCTCCTTATCATCATGA+AGG | - | chr7.2:24502951-24502970 | MS.gene55025:intron | 45.0% | |
| CCTTCATGATGATAAGGAGG+AGG | + | chr7.2:24502954-24502973 | None:intergenic | 45.0% | |
| GCACACACTATGAGATCTCA+TGG | - | chr7.2:24501671-24501690 | MS.gene55025:CDS | 45.0% | |
| GGACATAAGAGTTTCCCAAG+CGG | - | chr7.2:24502410-24502429 | MS.gene55025:intron | 45.0% | |
| GGGGTCCTTATGCTTATTTC+AGG | - | chr7.2:24503423-24503442 | MS.gene55025:intron | 45.0% | |
| TACATGAAGTATGGCCGCTT+GGG | + | chr7.2:24502427-24502446 | None:intergenic | 45.0% | |
| ! | CTACTTGCTGCATCACTTGT+TGG | - | chr7.2:24502714-24502733 | MS.gene55025:intron | 45.0% |
| ! | GCGATGTTTTCCAGATGGAA+AGG | - | chr7.2:24502234-24502253 | MS.gene55025:intron | 45.0% |
| ! | GTGTTTGCTGGAGGTCTTAT+AGG | - | chr7.2:24502777-24502796 | MS.gene55025:intron | 45.0% |
| ! | TTCTGGCGATGTTTTCCAGA+TGG | - | chr7.2:24502229-24502248 | MS.gene55025:intron | 45.0% |
| !! | AGAAGCTCAAGTTGAGAACC+AGG | - | chr7.2:24503523-24503542 | MS.gene55025:CDS | 45.0% |
| !! | GACGAGAGTGTCATAAAGGA+AGG | - | chr7.2:24502389-24502408 | MS.gene55025:intron | 45.0% |
| !! | TCTCTCGAGTTGATGACTAC+TGG | - | chr7.2:24502739-24502758 | MS.gene55025:intron | 45.0% |
| !! | TGGTGACGAGAGTGTCATAA+AGG | - | chr7.2:24502385-24502404 | MS.gene55025:intron | 45.0% |
| AAAGTCACCATGGGTGCATG+GGG | - | chr7.2:24503552-24503571 | MS.gene55025:CDS | 50.0% | |
| AAGTTAACCCCATGCACCCA+TGG | + | chr7.2:24503562-24503581 | None:intergenic | 50.0% | |
| ACAAAGTCACCATGGGTGCA+TGG | - | chr7.2:24503550-24503569 | MS.gene55025:CDS | 50.0% | |
| AGGAGGGACAAAGTCACCAT+GGG | - | chr7.2:24503543-24503562 | MS.gene55025:CDS | 50.0% | |
| CAAAGTCACCATGGGTGCAT+GGG | - | chr7.2:24503551-24503570 | MS.gene55025:CDS | 50.0% | |
| ! | TTGATGACTACTGGCACCAC+TGG | - | chr7.2:24502748-24502767 | MS.gene55025:intron | 50.0% |
| !! | AGCTCAAGTTGAGAACCAGG+AGG | - | chr7.2:24503526-24503545 | MS.gene55025:CDS | 50.0% |
| !! | GCTCAAGTTGAGAACCAGGA+GGG | - | chr7.2:24503527-24503546 | MS.gene55025:CDS | 50.0% |
| CAGGAGGGACAAAGTCACCA+TGG | - | chr7.2:24503542-24503561 | MS.gene55025:CDS | 55.0% | |
| CATAGTGTGTGCGCCAAGCT+GGG | + | chr7.2:24501663-24501682 | None:intergenic | 55.0% | |
| CATGGTGACTTTGTCCCTCC+TGG | + | chr7.2:24503544-24503563 | None:intergenic | 55.0% | |
| CTTACAGGAACAGCCCAGAC+AGG | + | chr7.2:24501851-24501870 | None:intergenic | 55.0% | |
| GACCTCGACCAGACTTCTTC+TGG | - | chr7.2:24502212-24502231 | MS.gene55025:intron | 55.0% | |
| TCATAGTGTGTGCGCCAAGC+TGG | + | chr7.2:24501664-24501683 | None:intergenic | 55.0% | |
| TGACTACTGGCACCACTGGA+CGG | - | chr7.2:24502752-24502771 | MS.gene55025:intron | 55.0% | |
| ! | GCAGGGTCATTTGCTGGTCT+AGG | - | chr7.2:24502606-24502625 | MS.gene55025:CDS | 55.0% |
| CACTGGACGGACGTGTTTGC+TGG | - | chr7.2:24502765-24502784 | MS.gene55025:intron | 60.0% | |
| CAGCAAACACGTCCGTCCAG+TGG | + | chr7.2:24502767-24502786 | None:intergenic | 60.0% | |
| CGCCAGAAGAAGTCTGGTCG+AGG | + | chr7.2:24502217-24502236 | None:intergenic | 60.0% | |
| ! | TGGACGGACGTGTTTGCTGG+AGG | - | chr7.2:24502768-24502787 | MS.gene55025:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 24501653 | 24503643 | 24501653 | ID=MS.gene55025 |
| chr7.2 | mRNA | 24501653 | 24503643 | 24501653 | ID=MS.gene55025.t1;Parent=MS.gene55025 |
| chr7.2 | exon | 24503431 | 24503643 | 24503431 | ID=MS.gene55025.t1.exon1;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24503431 | 24503643 | 24503431 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24503254 | 24503341 | 24503254 | ID=MS.gene55025.t1.exon2;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24503254 | 24503341 | 24503254 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24503038 | 24503147 | 24503038 | ID=MS.gene55025.t1.exon3;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24503038 | 24503147 | 24503038 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24502853 | 24502943 | 24502853 | ID=MS.gene55025.t1.exon4;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24502853 | 24502943 | 24502853 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24502498 | 24502686 | 24502498 | ID=MS.gene55025.t1.exon5;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24502498 | 24502686 | 24502498 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24502324 | 24502383 | 24502324 | ID=MS.gene55025.t1.exon6;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24502324 | 24502383 | 24502324 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| chr7.2 | exon | 24501653 | 24501876 | 24501653 | ID=MS.gene55025.t1.exon7;Parent=MS.gene55025.t1 |
| chr7.2 | CDS | 24501653 | 24501876 | 24501653 | ID=cds.MS.gene55025.t1;Parent=MS.gene55025.t1 |
| Gene Sequence |
| Protein sequence |
