Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55168.t1 | XP_003616622.1 | 98.4 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 2.50E-69 | 271.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55168.t1 | P59234 | 79.1 | 129 | 27 | 0 | 1 | 129 | 1 | 129 | 3.3e-57 | 222.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55168.t1 | G7KGZ8 | 98.4 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.8e-69 | 271.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene55168 | 0.800125 | 1.67E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene55168 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene55168 | 0.806272 | 8.92E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene55168 | 0.817183 | 3.76E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene55168 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene55168 | 0.822519 | 2.27E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene55168 | 0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene55168 | 0.846198 | 2.53E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene55168 | 0.850747 | 1.39E-60 | -1.69E-46 |
| MS.gene059965 | MS.gene55168 | 0.815396 | 9.45E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene55168 | 0.815105 | 1.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55168.t1 | MTR_5g082490 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 3.80e-93 | 265 |
| MS.gene55168.t1 | MTR_3g070330 | 77.519 | 129 | 29 | 0 | 1 | 129 | 24 | 152 | 3.74e-73 | 215 |
| MS.gene55168.t1 | MTR_3g070330 | 81.373 | 102 | 19 | 0 | 1 | 102 | 24 | 125 | 4.13e-59 | 179 |
| MS.gene55168.t1 | MTR_7g068250 | 69.027 | 113 | 35 | 0 | 1 | 113 | 1 | 113 | 8.55e-56 | 170 |
| MS.gene55168.t1 | MTR_2g078670 | 58.915 | 129 | 50 | 2 | 1 | 126 | 1 | 129 | 2.76e-47 | 149 |
| MS.gene55168.t1 | MTR_8g058785 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 7.96e-44 | 140 |
| MS.gene55168.t1 | MTR_8g061270 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 7.96e-44 | 140 |
| MS.gene55168.t1 | MTR_4g088505 | 57.143 | 105 | 45 | 0 | 1 | 105 | 1 | 105 | 3.17e-41 | 133 |
| MS.gene55168.t1 | MTR_8g027255 | 50.505 | 99 | 49 | 0 | 12 | 110 | 8 | 106 | 2.06e-33 | 113 |
| MS.gene55168.t1 | MTR_3g091840 | 52.128 | 94 | 45 | 0 | 12 | 105 | 8 | 101 | 2.62e-33 | 112 |
| MS.gene55168.t1 | MTR_4g088505 | 55.422 | 83 | 37 | 0 | 1 | 83 | 1 | 83 | 1.76e-29 | 103 |
| MS.gene55168.t1 | MTR_1g077750 | 46.429 | 84 | 45 | 0 | 12 | 95 | 8 | 91 | 1.16e-26 | 95.9 |
| MS.gene55168.t1 | MTR_1g077760 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 2.56e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55168.t1 | AT2G40110 | 78.462 | 130 | 27 | 1 | 1 | 129 | 1 | 130 | 1.76e-72 | 213 |
| MS.gene55168.t1 | AT3G11230 | 71.875 | 128 | 36 | 0 | 1 | 128 | 1 | 128 | 2.27e-66 | 197 |
| MS.gene55168.t1 | AT3G11230 | 71.875 | 128 | 36 | 0 | 1 | 128 | 34 | 161 | 4.78e-66 | 197 |
| MS.gene55168.t1 | AT2G40110 | 79.612 | 103 | 21 | 0 | 1 | 103 | 1 | 103 | 4.99e-58 | 175 |
| MS.gene55168.t1 | AT3G08990 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 2.46e-54 | 166 |
| MS.gene55168.t1 | AT3G08990 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 2.46e-54 | 166 |
| MS.gene55168.t1 | AT3G08990 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 2.46e-54 | 166 |
| MS.gene55168.t1 | AT3G11230 | 75.728 | 103 | 25 | 0 | 1 | 103 | 1 | 103 | 3.81e-54 | 165 |
| MS.gene55168.t1 | AT3G11230 | 76.471 | 102 | 24 | 0 | 1 | 102 | 34 | 135 | 7.66e-54 | 166 |
| MS.gene55168.t1 | AT3G55890 | 65.517 | 116 | 40 | 0 | 1 | 116 | 1 | 116 | 1.25e-52 | 162 |
| MS.gene55168.t1 | AT3G55890 | 65.517 | 116 | 40 | 0 | 1 | 116 | 1 | 116 | 1.25e-52 | 162 |
| MS.gene55168.t1 | AT5G53940 | 58.594 | 128 | 53 | 0 | 1 | 128 | 1 | 128 | 8.19e-50 | 155 |
| MS.gene55168.t1 | AT3G55890 | 67.327 | 101 | 33 | 0 | 1 | 101 | 1 | 101 | 6.44e-47 | 147 |
| MS.gene55168.t1 | AT3G55890 | 67.327 | 101 | 33 | 0 | 1 | 101 | 1 | 101 | 6.44e-47 | 147 |
| MS.gene55168.t1 | AT2G40110 | 75.904 | 83 | 20 | 0 | 1 | 83 | 1 | 83 | 2.67e-43 | 137 |
| MS.gene55168.t1 | AT2G40110 | 75.904 | 83 | 20 | 0 | 1 | 83 | 1 | 83 | 2.67e-43 | 137 |
| MS.gene55168.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.43e-35 | 117 |
| MS.gene55168.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.43e-35 | 117 |
| MS.gene55168.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.43e-35 | 117 |
| MS.gene55168.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.43e-35 | 117 |
| MS.gene55168.t1 | AT4G27740 | 41.935 | 93 | 54 | 0 | 14 | 106 | 10 | 102 | 4.21e-24 | 89.4 |
Find 30 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTGATGGCAGCAATTAT+TGG | 0.259271 | 5.2:-70447468 | MS.gene55168:CDS |
| TACAGTGTGAATGTTTCTAT+TGG | 0.322176 | 5.2:-70447995 | MS.gene55168:intron |
| TTGACCAGGTTCAAGGTGTC+TGG | 0.365136 | 5.2:-70447490 | MS.gene55168:intron |
| TCCTGATGGCAGCAATTATT+GGG | 0.368015 | 5.2:-70447467 | MS.gene55168:CDS |
| TGTTTCTATTGGAGAATTAG+AGG | 0.372709 | 5.2:-70447984 | MS.gene55168:CDS |
| TTGTTTGTTGTTCATCTTGA+AGG | 0.413695 | 5.2:-70450555 | MS.gene55168:CDS |
| ACCCAATAATTGCTGCCATC+AGG | 0.450327 | 5.2:+70447466 | None:intergenic |
| CAAGGATAACTTACACCTTA+CGG | 0.472783 | 5.2:+70448282 | None:intergenic |
| GAGGACAGAAATATGATGAC+TGG | 0.475545 | 5.2:-70447965 | MS.gene55168:CDS |
| TTGTGAAGATGTTGTTTCAA+AGG | 0.476254 | 5.2:-70450490 | MS.gene55168:intron |
| TTCAAGGTGTCTGGTCCTGA+TGG | 0.507863 | 5.2:-70447481 | MS.gene55168:CDS |
| CAGGCTTTCCACAGCAGACA+TGG | 0.524156 | 5.2:-70448320 | MS.gene55168:CDS |
| GTCGGTTGTGGATCAATCCT+CGG | 0.549786 | 5.2:-70447914 | MS.gene55168:CDS |
| TTCCAACACCATGTGTTGCA+TGG | 0.554586 | 5.2:+70447440 | None:intergenic |
| TTGTTGTTCATCTTGAAGGA+AGG | 0.554689 | 5.2:-70450551 | MS.gene55168:CDS |
| AAAAGCCAGAAGTACAAAGA+AGG | 0.556508 | 5.2:-70447786 | MS.gene55168:CDS |
| TTTCCACAGCAGACATGGGA+AGG | 0.566067 | 5.2:-70448315 | MS.gene55168:CDS |
| GTTGTGGATCAATCCTCGGT+TGG | 0.576717 | 5.2:-70447910 | MS.gene55168:CDS |
| AGCCATGCAACACATGGTGT+TGG | 0.595948 | 5.2:-70447442 | MS.gene55168:CDS |
| AGGCTTTCCACAGCAGACAT+GGG | 0.597650 | 5.2:-70448319 | MS.gene55168:CDS |
| AAGCCTTCCCATGTCTGCTG+TGG | 0.600078 | 5.2:+70448312 | None:intergenic |
| TGGGTTAGCCATGCAACACA+TGG | 0.601436 | 5.2:-70447448 | MS.gene55168:CDS |
| ACATCTTCACAAAGAGCAAG+AGG | 0.603930 | 5.2:+70450501 | None:intergenic |
| AAGGAAAATCTGTTCTCGAA+CGG | 0.607460 | 5.2:-70447767 | MS.gene55168:intron |
| AGGACAGAAATATGATGACT+GGG | 0.607783 | 5.2:-70447964 | MS.gene55168:CDS |
| CATCTTCACAAAGAGCAAGA+GGG | 0.619095 | 5.2:+70450502 | None:intergenic |
| ATCTTCACAAAGAGCAAGAG+GGG | 0.623684 | 5.2:+70450503 | None:intergenic |
| GAAGGCTTATCTCTTCCGTA+AGG | 0.633340 | 5.2:-70448297 | MS.gene55168:CDS |
| GTCTTACATATGTCCAACCG+AGG | 0.682634 | 5.2:+70447897 | None:intergenic |
| GATGACTGGGATGCATACTG+TGG | 0.714746 | 5.2:-70447951 | MS.gene55168:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAAAAAAATCAAAATT+GGG | + | chr5.2:70447546-70447565 | None:intergenic | 10.0% |
| !! | TAAAGTGAATTTATAAATTA+GGG | - | chr5.2:70448513-70448532 | MS.gene55168:intron | 10.0% |
| !! | TCATAAAAAAAAATCAAAAT+TGG | + | chr5.2:70447547-70447566 | None:intergenic | 10.0% |
| !! | TTAAAGTGAATTTATAAATT+AGG | - | chr5.2:70448512-70448531 | MS.gene55168:intron | 10.0% |
| !! | AAAGTGAATTTATAAATTAG+GGG | - | chr5.2:70448514-70448533 | MS.gene55168:intron | 15.0% |
| !! | AATAAGTAAAGATAAACAAT+CGG | - | chr5.2:70448418-70448437 | MS.gene55168:intron | 15.0% |
| !! | ATATGAAACCAATAATATAA+CGG | + | chr5.2:70449357-70449376 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTATAACAATTTA+GGG | - | chr5.2:70448222-70448241 | MS.gene55168:intron | 15.0% |
| !!! | TATTTGGTTTATAACAATTT+AGG | - | chr5.2:70448221-70448240 | MS.gene55168:intron | 15.0% |
| !!! | TTTAAGTTTTTGTTTATGTT+TGG | - | chr5.2:70447581-70447600 | MS.gene55168:intron | 15.0% |
| !! | AATAACCAATAAAGAAATGT+CGG | + | chr5.2:70449591-70449610 | None:intergenic | 20.0% |
| !! | ACTGATAATAATTAGAACAA+GGG | - | chr5.2:70450349-70450368 | MS.gene55168:intron | 20.0% |
| !! | ATATGTATATATATTCTGAC+TGG | - | chr5.2:70449617-70449636 | MS.gene55168:intron | 20.0% |
| !!! | AGCTTTTTCTTAATGTTTAA+CGG | - | chr5.2:70449550-70449569 | MS.gene55168:intron | 20.0% |
| !!! | TGCTATTAACTAAAACTTTT+TGG | - | chr5.2:70448904-70448923 | MS.gene55168:intron | 20.0% |
| ! | ACTAACTGCAAAATATAATG+CGG | + | chr5.2:70449924-70449943 | None:intergenic | 25.0% |
| ! | ACTTTAGATTACTAACTACA+AGG | + | chr5.2:70449836-70449855 | None:intergenic | 25.0% |
| ! | AGATGAAAGACAATAACATA+AGG | + | chr5.2:70448762-70448781 | None:intergenic | 25.0% |
| ! | ATAATCACAGTTTCAGTTTA+TGG | - | chr5.2:70448174-70448193 | MS.gene55168:intron | 25.0% |
| ! | ATGCAGAACAAAAGATTAAA+GGG | + | chr5.2:70449804-70449823 | None:intergenic | 25.0% |
| ! | CACTGATAATAATTAGAACA+AGG | - | chr5.2:70450348-70450367 | MS.gene55168:intron | 25.0% |
| ! | CATTAAGAAAAAGCTGAATT+TGG | + | chr5.2:70449545-70449564 | None:intergenic | 25.0% |
| ! | GATGATATATCCATTTAATC+AGG | + | chr5.2:70449485-70449504 | None:intergenic | 25.0% |
| ! | TAAGCATTTATAAGTTTCCA+AGG | + | chr5.2:70448821-70448840 | None:intergenic | 25.0% |
| ! | TTGAAACTTCAACAAAACTA+CGG | + | chr5.2:70447640-70447659 | None:intergenic | 25.0% |
| !! | AAACCATTCTATTCAGATTT+TGG | - | chr5.2:70449398-70449417 | MS.gene55168:intron | 25.0% |
| !! | ACAGCTTAAATTTTGTGTTA+AGG | - | chr5.2:70448349-70448368 | MS.gene55168:intron | 25.0% |
| !! | ACAGTTATGTTTTTCTTTCA+TGG | - | chr5.2:70449866-70449885 | MS.gene55168:intron | 25.0% |
| !! | GTTAGTAATCTAAAGTGTAA+AGG | - | chr5.2:70449840-70449859 | MS.gene55168:intron | 25.0% |
| !!! | ATGCTTAAGCACTTTTATTT+CGG | + | chr5.2:70448549-70448568 | None:intergenic | 25.0% |
| !!! | ATTTGTAATTTGTTTTGCTG+TGG | - | chr5.2:70448142-70448161 | MS.gene55168:intron | 25.0% |
| !!! | TATAAGTGACCAAGTTTTTT+AGG | - | chr5.2:70449459-70449478 | MS.gene55168:intron | 25.0% |
| !!! | TGTTTAACGGTTTTTTTAGT+TGG | - | chr5.2:70449563-70449582 | MS.gene55168:intron | 25.0% |
| AGACAATAACATAAGGTTGA+AGG | + | chr5.2:70448755-70448774 | None:intergenic | 30.0% | |
| AGCGATATATAAGTATGTTG+TGG | - | chr5.2:70450452-70450471 | MS.gene55168:intron | 30.0% | |
| ATGGTAAAACCAAAGTTATC+AGG | + | chr5.2:70449757-70449776 | None:intergenic | 30.0% | |
| ATGGTCGGAAATTAAAGTTA+TGG | - | chr5.2:70448379-70448398 | MS.gene55168:intron | 30.0% | |
| CATTAAGTTAAGTTACCCTT+TGG | - | chr5.2:70450150-70450169 | MS.gene55168:intron | 30.0% | |
| GAACCAAAATCTGAATAGAA+TGG | + | chr5.2:70449404-70449423 | None:intergenic | 30.0% | |
| GAATTTATAAATTAGGGGTG+AGG | - | chr5.2:70448519-70448538 | MS.gene55168:intron | 30.0% | |
| GATGCAGAACAAAAGATTAA+AGG | + | chr5.2:70449805-70449824 | None:intergenic | 30.0% | |
| GATTTCGGTTTCATTGAAAA+TGG | + | chr5.2:70449776-70449795 | None:intergenic | 30.0% | |
| GTGAATTATGTAGATTGTAG+AGG | + | chr5.2:70449192-70449211 | None:intergenic | 30.0% | |
| TCGAAACTTCAACAAAACTA+TGG | + | chr5.2:70447739-70447758 | None:intergenic | 30.0% | |
| TGGTTTCATATATTTCACAG+AGG | - | chr5.2:70449366-70449385 | MS.gene55168:intron | 30.0% | |
| TGTACTTCAGAATTAGACAA+TGG | + | chr5.2:70449081-70449100 | None:intergenic | 30.0% | |
| TTAATCAGGCCTAAAAAACT+TGG | + | chr5.2:70449471-70449490 | None:intergenic | 30.0% | |
| TTGTTGAAGTTTCAACGATT+AGG | - | chr5.2:70447645-70447664 | MS.gene55168:intron | 30.0% | |
| TTGTTGAAGTTTCGATGATT+AGG | - | chr5.2:70447843-70447862 | MS.gene55168:intron | 30.0% | |
| TTTCAGTTTATGGTGATAGT+TGG | - | chr5.2:70448184-70448203 | MS.gene55168:intron | 30.0% | |
| TTTGTGTTAAGGTACACAAA+TGG | - | chr5.2:70448360-70448379 | MS.gene55168:intron | 30.0% | |
| ! | ATGTTTTTCTTTCATGGCTT+TGG | - | chr5.2:70449872-70449891 | MS.gene55168:intron | 30.0% |
| ! | ATTTTCCTTCTTTGTACTTC+TGG | + | chr5.2:70450206-70450225 | None:intergenic | 30.0% |
| ! | CTTTTGTTCTGCATCATTTT+GGG | - | chr5.2:70449810-70449829 | MS.gene55168:intron | 30.0% |
| ! | TACAGTGTGAATGTTTCTAT+TGG | - | chr5.2:70449989-70450008 | MS.gene55168:intron | 30.0% |
| ! | TCTTTTGTTCTGCATCATTT+TGG | - | chr5.2:70449809-70449828 | MS.gene55168:intron | 30.0% |
| ! | TGTTTCTATTGGAGAATTAG+AGG | - | chr5.2:70450000-70450019 | MS.gene55168:intron | 30.0% |
| ! | TGTTTTTCTTTCATGGCTTT+GGG | - | chr5.2:70449873-70449892 | MS.gene55168:intron | 30.0% |
| !! | ATTTTCTCTGGTGTCAATTT+AGG | + | chr5.2:70449258-70449277 | None:intergenic | 30.0% |
| !! | GAAATAAAAGTGCTTAAGCA+TGG | - | chr5.2:70448548-70448567 | MS.gene55168:intron | 30.0% |
| !! | TTGTGAAGATGTTGTTTCAA+AGG | - | chr5.2:70447494-70447513 | MS.gene55168:intron | 30.0% |
| !! | TTGTTTGTTGTTCATCTTGA+AGG | - | chr5.2:70447429-70447448 | MS.gene55168:CDS | 30.0% |
| !! | TTTGTTTTCTCAGAGAAGAA+AGG | - | chr5.2:70449163-70449182 | MS.gene55168:intron | 30.0% |
| !!! | GTTTTTTAGGCCTGATTAAA+TGG | - | chr5.2:70449472-70449491 | MS.gene55168:intron | 30.0% |
| AAGGAAAATCTGTTCTCGAA+CGG | - | chr5.2:70450217-70450236 | MS.gene55168:intron | 35.0% | |
| ACTTAATGCAGCATAGAAAC+AGG | + | chr5.2:70450138-70450157 | None:intergenic | 35.0% | |
| AGAAGTTACTTCTGTGCAAA+AGG | - | chr5.2:70449016-70449035 | MS.gene55168:intron | 35.0% | |
| AGATAAACAATCGGAGTGAT+CGG | - | chr5.2:70448427-70448446 | MS.gene55168:intron | 35.0% | |
| AGGACAGAAATATGATGACT+GGG | - | chr5.2:70450020-70450039 | MS.gene55168:intron | 35.0% | |
| CAACTATTCTCAGGATGTAT+CGG | + | chr5.2:70448617-70448636 | None:intergenic | 35.0% | |
| CAAGGATAACTTACACCTTA+CGG | + | chr5.2:70449705-70449724 | None:intergenic | 35.0% | |
| CAATAACATAAGGTTGAAGG+TGG | + | chr5.2:70448752-70448771 | None:intergenic | 35.0% | |
| CAATGGTGCAAGATACAAAA+TGG | - | chr5.2:70448579-70448598 | MS.gene55168:intron | 35.0% | |
| CAGAACAAAAGATTAAAGGG+TGG | + | chr5.2:70449801-70449820 | None:intergenic | 35.0% | |
| GATTAAAGGGTGGAAGATTT+CGG | + | chr5.2:70449791-70449810 | None:intergenic | 35.0% | |
| GCAAATAGTCCTTCAAAAGT+AGG | + | chr5.2:70449057-70449076 | None:intergenic | 35.0% | |
| GGATAACAGCTTTGCTTATT+TGG | - | chr5.2:70448205-70448224 | MS.gene55168:intron | 35.0% | |
| GGTCATCAACATTTGTGTAT+TGG | - | chr5.2:70448681-70448700 | MS.gene55168:intron | 35.0% | |
| GTCGGAAATTAAAGTTATGG+TGG | - | chr5.2:70448382-70448401 | MS.gene55168:intron | 35.0% | |
| GTGTAAGTTATCCTTGACAT+TGG | - | chr5.2:70449709-70449728 | MS.gene55168:intron | 35.0% | |
| TATGAGTGTATCTGACAAAG+TGG | - | chr5.2:70448945-70448964 | MS.gene55168:intron | 35.0% | |
| TGGAACCGACATTTCTTTAT+TGG | - | chr5.2:70449583-70449602 | MS.gene55168:intron | 35.0% | |
| TGTTAAGGTACACAAATGGT+CGG | - | chr5.2:70448364-70448383 | MS.gene55168:intron | 35.0% | |
| TTACTTCTGTGCAAAAGGAA+AGG | - | chr5.2:70449021-70449040 | MS.gene55168:intron | 35.0% | |
| TTGTTGAAGTTTCGACGATT+AGG | - | chr5.2:70447744-70447763 | MS.gene55168:intron | 35.0% | |
| TTTAATCGTCATGCTTCAAC+TGG | + | chr5.2:70448497-70448516 | None:intergenic | 35.0% | |
| ! | AAAAGCCAGAAGTACAAAGA+AGG | - | chr5.2:70450198-70450217 | MS.gene55168:intron | 35.0% |
| ! | AAAGTTATGGTGGAACTAGA+AGG | - | chr5.2:70448392-70448411 | MS.gene55168:intron | 35.0% |
| ! | ACTTCACTGTATTACTGGTT+GGG | - | chr5.2:70448464-70448483 | MS.gene55168:intron | 35.0% |
| ! | CACGCTTGATAATCGATTTA+AGG | - | chr5.2:70448311-70448330 | MS.gene55168:CDS | 35.0% |
| ! | TCGATTTAAGGTTGCGTTTA+TGG | - | chr5.2:70448323-70448342 | MS.gene55168:intron | 35.0% |
| ! | TTGTTGTTCATCTTGAAGGA+AGG | - | chr5.2:70447433-70447452 | MS.gene55168:CDS | 35.0% |
| !! | GGAAGTAATCCTACTTTTGA+AGG | - | chr5.2:70449045-70449064 | MS.gene55168:intron | 35.0% |
| !! | GTTTTGGCATTAGCACAATT+TGG | + | chr5.2:70448788-70448807 | None:intergenic | 35.0% |
| !! | TTACTTGTGCTGTTTCATTC+AGG | - | chr5.2:70449645-70449664 | MS.gene55168:intron | 35.0% |
| !!! | GTAATTTGTTTTGCTGTGGT+GGG | - | chr5.2:70448146-70448165 | MS.gene55168:intron | 35.0% |
| !!! | TGTAATTTGTTTTGCTGTGG+TGG | - | chr5.2:70448145-70448164 | MS.gene55168:intron | 35.0% |
| AATCAGATTCGCAGTGACTT+CGG | + | chr5.2:70448108-70448127 | None:intergenic | 40.0% | |
| ACATCTTCACAAAGAGCAAG+AGG | + | chr5.2:70447486-70447505 | None:intergenic | 40.0% | |
| AGTCTCCTGAAAGAAACCAA+AGG | + | chr5.2:70450169-70450188 | None:intergenic | 40.0% | |
| AGTGCTTAAGCATGGTATTG+TGG | - | chr5.2:70448556-70448575 | MS.gene55168:intron | 40.0% | |
| ATAATGCGGCTTAGAGCTAA+TGG | + | chr5.2:70449910-70449929 | None:intergenic | 40.0% | |
| ATCTTCACAAAGAGCAAGAG+GGG | + | chr5.2:70447484-70447503 | None:intergenic | 40.0% | |
| CACTTCACTGTATTACTGGT+TGG | - | chr5.2:70448463-70448482 | MS.gene55168:intron | 40.0% | |
| CATCTTCACAAAGAGCAAGA+GGG | + | chr5.2:70447485-70447504 | None:intergenic | 40.0% | |
| CCAAAACATGTATGCTTCCT+TGG | - | chr5.2:70448801-70448820 | MS.gene55168:intron | 40.0% | |
| CGATGACGTACTATGATTCA+TGG | - | chr5.2:70447787-70447806 | MS.gene55168:CDS | 40.0% | |
| GAGGACAGAAATATGATGAC+TGG | - | chr5.2:70450019-70450038 | MS.gene55168:intron | 40.0% | |
| GCTTAGAGCTAATGGAGATT+CGG | + | chr5.2:70449902-70449921 | None:intergenic | 40.0% | |
| GGGTTGAGCCGTTATATTAT+TGG | - | chr5.2:70449346-70449365 | MS.gene55168:intron | 40.0% | |
| GTCTCCTGAAAGAAACCAAA+GGG | + | chr5.2:70450168-70450187 | None:intergenic | 40.0% | |
| GTGTTCTGTCCTGATAACTT+TGG | - | chr5.2:70449745-70449764 | MS.gene55168:intron | 40.0% | |
| TAAGCATGGTATTGTGGCAA+TGG | - | chr5.2:70448562-70448581 | MS.gene55168:intron | 40.0% | |
| TCCTGATGGCAGCAATTATT+GGG | - | chr5.2:70450517-70450536 | MS.gene55168:CDS | 40.0% | |
| TGAAGGTGGTCATTAAACCA+AGG | + | chr5.2:70448738-70448757 | None:intergenic | 40.0% | |
| ! | CATCCTGAGAATAGTTGATG+CGG | - | chr5.2:70448620-70448639 | MS.gene55168:intron | 40.0% |
| ! | GAGTTTTTGCTCTTTTGACC+AGG | - | chr5.2:70450480-70450499 | MS.gene55168:intron | 40.0% |
| ! | GTTACCCTTTGGTTTCTTTC+AGG | - | chr5.2:70450161-70450180 | MS.gene55168:intron | 40.0% |
| ! | TCTCTGGTGTCAATTTAGGT+GGG | + | chr5.2:70449254-70449273 | None:intergenic | 40.0% |
| ! | TTCTCTGGTGTCAATTTAGG+TGG | + | chr5.2:70449255-70449274 | None:intergenic | 40.0% |
| !! | AGTGAAAGGTACCAATGTCA+AGG | + | chr5.2:70449723-70449742 | None:intergenic | 40.0% |
| !! | CCAAGGAAGCATACATGTTT+TGG | + | chr5.2:70448804-70448823 | None:intergenic | 40.0% |
| AAATCGAACCTGAGACCTCA+AGG | - | chr5.2:70449274-70449293 | MS.gene55168:intron | 45.0% | |
| ACCCAATAATTGCTGCCATC+AGG | + | chr5.2:70450521-70450540 | None:intergenic | 45.0% | |
| AGGACAGAACACGTAGTGAA+AGG | + | chr5.2:70449737-70449756 | None:intergenic | 45.0% | |
| ATACTCTGTCAGTGTCGTGT+TGG | - | chr5.2:70450388-70450407 | MS.gene55168:intron | 45.0% | |
| ATATAACGGCTCAACCCACT+TGG | + | chr5.2:70449343-70449362 | None:intergenic | 45.0% | |
| CGATGACGCACTATGATTCA+TGG | - | chr5.2:70447688-70447707 | MS.gene55168:intron | 45.0% | |
| CTACCGCATCAACTATTCTC+AGG | + | chr5.2:70448626-70448645 | None:intergenic | 45.0% | |
| CTTCTGTGCAAAAGGAAAGG+TGG | - | chr5.2:70449024-70449043 | MS.gene55168:intron | 45.0% | |
| GAAGGCTTATCTCTTCCGTA+AGG | - | chr5.2:70449687-70449706 | MS.gene55168:intron | 45.0% | |
| GTCCTGATGGCAGCAATTAT+TGG | - | chr5.2:70450516-70450535 | MS.gene55168:CDS | 45.0% | |
| GTCTTACATATGTCCAACCG+AGG | + | chr5.2:70450090-70450109 | None:intergenic | 45.0% | |
| GTTGTGTAACGTAAACGCCT+TGG | - | chr5.2:70448718-70448737 | MS.gene55168:intron | 45.0% | |
| TAGAGCTAATGGAGATTCGG+AGG | + | chr5.2:70449899-70449918 | None:intergenic | 45.0% | |
| TATAACGGCTCAACCCACTT+GGG | + | chr5.2:70449342-70449361 | None:intergenic | 45.0% | |
| TATCGCTCTCAAAACCCATG+TGG | + | chr5.2:70450439-70450458 | None:intergenic | 45.0% | |
| TTCCAACACCATGTGTTGCA+TGG | + | chr5.2:70450547-70450566 | None:intergenic | 45.0% | |
| ! | GAGAATAGTTGATGCGGTAG+TGG | - | chr5.2:70448626-70448645 | MS.gene55168:intron | 45.0% |
| ! | GTCTCAGGTTCGATTTTCTC+TGG | + | chr5.2:70449270-70449289 | None:intergenic | 45.0% |
| ! | GTGGCTGACATTTTCTGTGT+CGG | - | chr5.2:70450052-70450071 | MS.gene55168:intron | 45.0% |
| ! | TGCTCTTTTGACCAGGTTCA+AGG | - | chr5.2:70450487-70450506 | MS.gene55168:intron | 45.0% |
| !!! | GACATTTTCTGTGTCGGTTG+TGG | - | chr5.2:70450058-70450077 | MS.gene55168:intron | 45.0% |
| AAACTGCCGAAACAGCACCA+TGG | - | chr5.2:70448654-70448673 | MS.gene55168:intron | 50.0% | |
| AGCCATGCAACACATGGTGT+TGG | - | chr5.2:70450542-70450561 | MS.gene55168:CDS | 50.0% | |
| AGGCTTTCCACAGCAGACAT+GGG | - | chr5.2:70449665-70449684 | MS.gene55168:intron | 50.0% | |
| GATGACTGGGATGCATACTG+TGG | - | chr5.2:70450033-70450052 | MS.gene55168:intron | 50.0% | |
| GTCGGTTGTGGATCAATCCT+CGG | - | chr5.2:70450070-70450089 | MS.gene55168:intron | 50.0% | |
| GTTGTGGATCAATCCTCGGT+TGG | - | chr5.2:70450074-70450093 | MS.gene55168:intron | 50.0% | |
| TGCCTGACATCAACACCTGT+CGG | - | chr5.2:70450411-70450430 | MS.gene55168:intron | 50.0% | |
| TTTCCACAGCAGACATGGGA+AGG | - | chr5.2:70449669-70449688 | MS.gene55168:intron | 50.0% | |
| ! | GGGGCACTTCACTGTATTAC+TGG | - | chr5.2:70448459-70448478 | MS.gene55168:intron | 50.0% |
| ! | TTCAAGGTGTCTGGTCCTGA+TGG | - | chr5.2:70450503-70450522 | MS.gene55168:CDS | 50.0% |
| ! | TTGACCAGGTTCAAGGTGTC+TGG | - | chr5.2:70450494-70450513 | MS.gene55168:CDS | 50.0% |
| !! | AATGTTGATGACCGCTGCCA+TGG | + | chr5.2:70448674-70448693 | None:intergenic | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | + | chr5.2:70449318-70449337 | None:intergenic | 50.0% |
| !! | TGGGTTAGCCATGCAACACA+TGG | - | chr5.2:70450536-70450555 | MS.gene55168:CDS | 50.0% |
| !! | TGGTGCTGTTTCGGCAGTTT+CGG | + | chr5.2:70448654-70448673 | None:intergenic | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr5.2:70449319-70449338 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr5.2:70449324-70449343 | None:intergenic | 50.0% |
| AAGCCTTCCCATGTCTGCTG+TGG | + | chr5.2:70449675-70449694 | None:intergenic | 55.0% | |
| AATCGGAGTGATCGGCCTTG+AGG | - | chr5.2:70448435-70448454 | MS.gene55168:intron | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr5.2:70449326-70449345 | MS.gene55168:intron | 55.0% | |
| AGGACCAGACACCTTGAACC+TGG | + | chr5.2:70450501-70450520 | None:intergenic | 55.0% | |
| CAGGCTTTCCACAGCAGACA+TGG | - | chr5.2:70449664-70449683 | MS.gene55168:intron | 55.0% | |
| CGATGACGCGCTATGATTCG+TGG | - | chr5.2:70447886-70447905 | MS.gene55168:intron | 55.0% | |
| GGTCCCAAGCCAATACCACT+AGG | - | chr5.2:70449312-70449331 | MS.gene55168:intron | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr5.2:70449325-70449344 | MS.gene55168:intron | 55.0% | |
| TCGAACCTGAGACCTCAAGG+AGG | - | chr5.2:70449277-70449296 | MS.gene55168:intron | 55.0% | |
| !! | AAAACCCATGTGGCACCGAC+AGG | + | chr5.2:70450429-70450448 | None:intergenic | 55.0% |
| !! | AACACCTGTCGGTGCCACAT+GGG | - | chr5.2:70450422-70450441 | MS.gene55168:intron | 55.0% |
| !! | AGTGGTATTGGCTTGGGACC+TGG | + | chr5.2:70449312-70449331 | None:intergenic | 55.0% |
| !! | CACCGACAGGTGTTGATGTC+AGG | + | chr5.2:70450416-70450435 | None:intergenic | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+GGG | + | chr5.2:70449311-70449330 | None:intergenic | 55.0% |
| ACGGCTCAACCCACTTGGGT+TGG | + | chr5.2:70449338-70449357 | None:intergenic | 60.0% | |
| CCGAAACAGCACCATGGCAG+CGG | - | chr5.2:70448660-70448679 | MS.gene55168:intron | 60.0% | |
| GTGCTCCTCCTTGAGGTCTC+AGG | + | chr5.2:70449285-70449304 | None:intergenic | 60.0% | |
| ! | TCAAGGAGGAGCACACTCCC+AGG | - | chr5.2:70449291-70449310 | MS.gene55168:intron | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | + | chr5.2:70449292-70449311 | None:intergenic | 60.0% |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr5.2:70449330-70449349 | None:intergenic | 60.0% |
| !! | CAACACCTGTCGGTGCCACA+TGG | - | chr5.2:70450421-70450440 | MS.gene55168:intron | 60.0% |
| !! | CCGCTGCCATGGTGCTGTTT+CGG | + | chr5.2:70448663-70448682 | None:intergenic | 60.0% |
| CGGAGTGATCGGCCTTGAGG+CGG | - | chr5.2:70448438-70448457 | MS.gene55168:intron | 65.0% | |
| GAGTGATCGGCCTTGAGGCG+GGG | - | chr5.2:70448440-70448459 | MS.gene55168:intron | 65.0% | |
| GGAGTGATCGGCCTTGAGGC+GGG | - | chr5.2:70448439-70448458 | MS.gene55168:intron | 65.0% | |
| ! | CAGTGAAGTGCCCCGCCTCA+AGG | + | chr5.2:70448453-70448472 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 70447420 | 70450586 | 70447420 | ID=MS.gene55168 |
| chr5.2 | mRNA | 70447420 | 70450586 | 70447420 | ID=MS.gene55168.t1;Parent=MS.gene55168 |
| chr5.2 | exon | 70450491 | 70450586 | 70450491 | ID=MS.gene55168.t1.exon1;Parent=MS.gene55168.t1 |
| chr5.2 | CDS | 70450491 | 70450586 | 70450491 | ID=cds.MS.gene55168.t1;Parent=MS.gene55168.t1 |
| chr5.2 | exon | 70448296 | 70448339 | 70448296 | ID=MS.gene55168.t1.exon2;Parent=MS.gene55168.t1 |
| chr5.2 | CDS | 70448296 | 70448339 | 70448296 | ID=cds.MS.gene55168.t1;Parent=MS.gene55168.t1 |
| chr5.2 | exon | 70447904 | 70448012 | 70447904 | ID=MS.gene55168.t1.exon3;Parent=MS.gene55168.t1 |
| chr5.2 | CDS | 70447904 | 70448012 | 70447904 | ID=cds.MS.gene55168.t1;Parent=MS.gene55168.t1 |
| chr5.2 | exon | 70447768 | 70447823 | 70447768 | ID=MS.gene55168.t1.exon4;Parent=MS.gene55168.t1 |
| chr5.2 | CDS | 70447768 | 70447823 | 70447768 | ID=cds.MS.gene55168.t1;Parent=MS.gene55168.t1 |
| chr5.2 | exon | 70447420 | 70447504 | 70447420 | ID=MS.gene55168.t1.exon5;Parent=MS.gene55168.t1 |
| chr5.2 | CDS | 70447420 | 70447504 | 70447420 | ID=cds.MS.gene55168.t1;Parent=MS.gene55168.t1 |
| Gene Sequence |
| Protein sequence |
