AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55210.t1 MTR_5g040360 96.716 609 20 0 1 609 1 609 0.0 1242
MS.gene55210.t1 MTR_8g055840 85.082 610 90 1 1 609 1 610 0.0 1112
MS.gene55210.t1 MTR_3g040370 72.896 594 157 3 15 608 17 606 0.0 942
MS.gene55210.t1 MTR_4g098890 66.285 611 189 6 8 609 9 611 0.0 875
MS.gene55210.t1 MTR_1g101370 56.020 598 244 8 18 600 25 618 0.0 697
MS.gene55210.t1 MTR_8g100075 52.894 622 262 7 9 608 17 629 0.0 696
MS.gene55210.t1 MTR_0019s0120 54.516 609 254 7 19 608 31 635 0.0 691
MS.gene55210.t1 MTR_7g076170 53.560 618 256 8 11 601 14 627 0.0 689
MS.gene55210.t1 MTR_8g432680 51.967 610 264 9 17 601 27 632 0.0 663
MS.gene55210.t1 MTR_7g006060 50.755 530 248 4 77 593 36 565 0.0 566
MS.gene55210.t1 MTR_0019s0120 53.242 509 214 8 18 507 31 534 0.0 547
MS.gene55210.t1 MTR_8g071280 46.095 525 272 7 84 601 70 590 6.38e-165 484
MS.gene55210.t1 MTR_5g026930 42.010 607 321 10 2 599 6 590 1.64e-162 478
MS.gene55210.t1 MTR_7g076150 44.096 542 274 8 71 599 62 587 3.78e-160 471
MS.gene55210.t1 MTR_8g432620 43.421 532 272 8 82 600 86 601 2.84e-159 469
MS.gene55210.t1 MTR_5g080720 43.364 535 277 11 75 596 116 637 1.34e-152 454
MS.gene55210.t1 MTR_1g442840 40.230 609 309 14 1 575 1 588 1.22e-146 438
MS.gene55210.t1 MTR_1g069785 39.680 625 315 17 1 601 1 587 3.06e-146 436
MS.gene55210.t1 MTR_1g075900 40.000 640 337 16 1 609 1 624 9.80e-145 433
MS.gene55210.t1 MTR_3g068990 43.715 533 266 11 82 597 151 666 1.79e-143 431
MS.gene55210.t1 MTR_1g442840 45.094 479 236 9 111 575 10 475 1.75e-142 423
MS.gene55210.t1 MTR_1g029730 43.396 530 273 13 84 598 141 658 4.07e-141 425
MS.gene55210.t1 MTR_7g076150 44.444 459 226 8 154 599 2 444 3.24e-136 405
MS.gene55210.t1 MTR_5g080720 43.579 475 242 11 75 536 116 577 1.10e-133 403
MS.gene55210.t1 MTR_5g026930 41.553 515 271 9 2 507 6 499 1.41e-132 397
MS.gene55210.t1 MTR_5g083150 39.313 524 277 14 92 599 100 598 5.20e-131 397
MS.gene55210.t1 MTR_3g096480 41.445 526 272 14 93 599 268 776 4.57e-127 392
MS.gene55210.t1 MTR_5g021100 41.313 518 268 15 93 590 329 830 8.40e-127 394
MS.gene55210.t1 MTR_8g076650 41.811 519 263 15 93 590 387 887 3.05e-125 391
MS.gene55210.t1 MTR_3g071530 38.475 551 293 17 62 599 129 646 4.23e-125 383
MS.gene55210.t1 MTR_1g051055 39.139 534 285 13 87 599 89 603 5.10e-124 379
MS.gene55210.t1 MTR_8g093880 40.494 526 277 13 93 599 298 806 4.18e-123 383
MS.gene55210.t1 MTR_3g088790 40.265 529 275 16 93 599 233 742 1.09e-120 375
MS.gene55210.t1 MTR_4g083030 31.760 551 335 12 70 598 72 603 2.33e-91 294
MS.gene55210.t1 MTR_3g074780 30.944 572 340 17 70 604 140 693 6.76e-89 290
MS.gene55210.t1 MTR_1g022255 32.959 534 307 15 84 599 199 699 1.23e-86 284
MS.gene55210.t1 MTR_5g064080 29.595 642 371 21 2 599 66 670 8.55e-85 279
MS.gene55210.t1 MTR_1g022255 28.500 400 241 12 84 466 199 570 1.16e-42 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55210.t1 AT1G26850 77.724 615 127 3 3 609 4 616 0.0 1025
MS.gene55210.t1 AT1G26850 77.724 615 127 3 3 609 4 616 0.0 1025
MS.gene55210.t1 AT4G18030 66.722 601 186 5 9 601 11 605 0.0 857
MS.gene55210.t1 AT1G26850 76.200 500 111 2 3 494 4 503 0.0 819
MS.gene55210.t1 AT4G10440 54.708 616 245 6 9 601 14 618 0.0 711
MS.gene55210.t1 AT1G33170 51.703 646 263 7 1 604 1 639 0.0 692
MS.gene55210.t1 AT4G00750 51.144 612 284 5 5 601 13 624 0.0 665
MS.gene55210.t1 AT2G45750 51.356 627 276 9 5 607 7 628 0.0 660
MS.gene55210.t1 AT2G43200 51.830 519 239 5 84 594 91 606 0.0 557
MS.gene55210.t1 AT2G43200 51.830 519 239 5 84 594 91 606 0.0 557
MS.gene55210.t1 AT1G31850 45.506 534 275 9 84 607 76 603 1.58e-168 493
MS.gene55210.t1 AT1G31850 45.506 534 275 9 84 607 76 603 1.58e-168 493
MS.gene55210.t1 AT1G31850 45.506 534 275 9 84 607 76 603 1.58e-168 493
MS.gene55210.t1 AT1G31850 45.506 534 275 9 84 607 76 603 1.58e-168 493
MS.gene55210.t1 AT4G19120 43.580 553 296 9 69 609 52 600 3.48e-167 490
MS.gene55210.t1 AT4G19120 43.580 553 296 9 69 609 52 600 3.48e-167 490
MS.gene55210.t1 AT4G00740 45.677 532 260 9 87 605 84 599 1.61e-163 480
MS.gene55210.t1 AT4G00740 45.677 532 260 9 87 605 84 599 1.61e-163 480
MS.gene55210.t1 AT5G06050 42.803 528 276 11 84 598 149 663 1.17e-145 437
MS.gene55210.t1 AT1G04430 40.577 589 314 12 8 576 9 581 3.66e-143 429
MS.gene55210.t1 AT1G04430 40.577 589 314 12 8 576 9 581 3.66e-143 429
MS.gene55210.t1 AT1G04430 40.577 589 314 12 8 576 9 581 3.66e-143 429
MS.gene55210.t1 AT2G39750 41.869 535 285 11 78 597 167 690 7.24e-143 431
MS.gene55210.t1 AT3G23300 42.620 542 276 13 81 601 76 603 8.63e-142 425
MS.gene55210.t1 AT3G23300 42.620 542 276 13 81 601 76 603 8.63e-142 425
MS.gene55210.t1 AT4G14360 43.860 513 257 11 81 575 73 572 9.87e-142 425
MS.gene55210.t1 AT4G14360 43.860 513 257 11 81 575 73 572 9.87e-142 425
MS.gene55210.t1 AT1G77260 41.869 535 283 12 76 597 135 654 2.24e-138 418
MS.gene55210.t1 AT4G19120 44.568 451 235 8 69 507 52 499 1.83e-136 407
MS.gene55210.t1 AT1G29470 41.760 534 277 13 93 609 250 766 4.23e-134 410
MS.gene55210.t1 AT1G29470 41.760 534 277 13 93 609 250 766 4.23e-134 410
MS.gene55210.t1 AT2G34300 42.481 532 271 14 93 606 250 764 4.87e-134 410
MS.gene55210.t1 AT2G34300 42.481 532 271 14 93 606 250 764 4.87e-134 410
MS.gene55210.t1 AT2G34300 42.481 532 271 14 93 606 250 764 4.87e-134 410
MS.gene55210.t1 AT2G40280 40.341 528 271 13 87 599 83 581 1.19e-133 403
MS.gene55210.t1 AT5G14430 39.024 615 322 16 11 599 17 604 1.62e-132 401
MS.gene55210.t1 AT5G04060 39.394 528 289 9 87 599 86 597 7.38e-131 397
MS.gene55210.t1 AT5G14430 38.699 615 324 16 11 599 17 604 7.97e-131 397
MS.gene55210.t1 AT3G56080 39.923 521 273 12 93 599 114 608 1.85e-128 391
MS.gene55210.t1 AT5G64030 41.782 505 264 12 93 579 308 800 1.98e-126 392
MS.gene55210.t1 AT3G10200 38.462 533 289 12 87 599 75 588 1.33e-125 383
MS.gene55210.t1 AT3G51070 41.418 536 270 19 92 604 380 894 1.46e-125 392
MS.gene55210.t1 AT3G10200 39.959 483 252 11 87 550 75 538 3.17e-117 361
MS.gene55210.t1 AT3G56080 41.333 450 232 11 93 528 114 545 2.41e-113 350
MS.gene55210.t1 AT3G51070 42.795 458 226 17 92 528 380 822 1.29e-107 343
MS.gene55210.t1 AT1G13860 33.084 535 307 13 79 584 76 588 6.22e-93 298
MS.gene55210.t1 AT1G13860 33.084 535 307 13 79 584 76 588 6.22e-93 298
MS.gene55210.t1 AT1G13860 33.084 535 307 13 79 584 76 588 6.22e-93 298
MS.gene55210.t1 AT1G13860 33.084 535 307 13 79 584 76 588 6.22e-93 298
MS.gene55210.t1 AT2G03480 31.230 634 350 17 3 598 7 592 4.55e-90 290
MS.gene55210.t1 AT2G03480 31.051 628 370 15 3 598 7 603 2.89e-89 289
MS.gene55210.t1 AT1G19430 33.142 522 304 14 93 599 231 722 1.08e-86 285
MS.gene55210.t1 AT1G19430 33.142 522 304 14 93 599 231 722 1.08e-86 285
MS.gene55210.t1 AT1G13860 35.455 440 247 11 171 584 4 432 7.12e-85 272
MS.gene55210.t1 AT1G78240 31.383 564 330 17 74 598 133 678 8.67e-85 279
MS.gene55210.t1 AT1G78240 31.383 564 330 17 74 598 133 678 8.67e-85 279
MS.gene55210.t1 AT2G03480 30.244 410 248 9 3 393 7 397 2.69e-48 174
MS.gene55210.t1 AT1G19430 29.231 390 237 11 93 468 231 595 8.26e-45 169

Find 167 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGGTTATTGGGTGCTTTC+GGG 0.168627 5.2:-30331080 MS.gene55210:CDS
TGTCAGCCCCTTGAGGAAAT+TGG 0.202729 5.2:+30331835 None:intergenic
TGAGAATCAAAGCTTAAATT+TGG 0.224891 5.2:+30332206 None:intergenic
CCAGTTGGGGTGCATATCTT+TGG 0.240419 5.2:-30331418 MS.gene55210:CDS
TTCTAAGACCTGGCGGTTAT+TGG 0.250522 5.2:-30331091 MS.gene55210:CDS
TGGCGGTTATTGGGTGCTTT+CGG 0.251157 5.2:-30331081 MS.gene55210:CDS
CTCAACTGTAAGACTCTTAT+AGG 0.261689 5.2:+30331920 None:intergenic
TTCTCGTTGCTTAATTCCTT+GGG 0.266033 5.2:-30331243 MS.gene55210:CDS
TGTTGTTTCTTCTACATATT+AGG 0.267388 5.2:-30332311 MS.gene55210:CDS
GTTCTACTACCAGAAGAAAT+TGG 0.274137 5.2:+30332371 None:intergenic
TCGTTGCAGGTATAAGAAAA+TGG 0.307086 5.2:-30330660 MS.gene55210:intron
TGAACACATTTCCCTCATAT+TGG 0.312865 5.2:+30331877 None:intergenic
GTTCTCGTTGCTTAATTCCT+TGG 0.315484 5.2:-30331244 MS.gene55210:CDS
GACAGCAATTTCATTCTTCT+CGG 0.325154 5.2:+30330941 None:intergenic
GTTGCCAGTGGTTCTGTTCC+CGG 0.338306 5.2:-30330557 MS.gene55210:CDS
TAACATAGATGACATTCTTC+TGG 0.339214 5.2:-30329592 MS.gene55210:CDS
GTGCAGATCTTTATAGTAGT+TGG 0.347054 5.2:-30332338 MS.gene55210:CDS
ATGGCTAAACCAATTTCTTC+TGG 0.354667 5.2:-30332380 MS.gene55210:CDS
TCCATCTGGAGCCTTTGATA+TGG 0.355823 5.2:-30331273 MS.gene55210:CDS
CTATTCAATCTCCTAAGTTA+TGG 0.359289 5.2:-30330391 MS.gene55210:CDS
TCATAGGCATTTATCATGAT+TGG 0.359736 5.2:-30330304 MS.gene55210:intron
GGAACATAATCACGGCTCTT+TGG 0.368346 5.2:+30331957 None:intergenic
ATAAAATTGCCTTATCCATC+TGG 0.370154 5.2:-30331287 MS.gene55210:CDS
AATTGCTGTCAAGCAGTATT+GGG 0.374007 5.2:-30329418 MS.gene55210:CDS
CGGAATATCACAGCACCTTC+AGG 0.375594 5.2:+30329549 None:intergenic
CATGGATATGAATGCTGGTT+TGG 0.377343 5.2:-30330429 MS.gene55210:CDS
CGAAGTAGACAAGAAGATTC+TGG 0.381386 5.2:-30330888 MS.gene55210:CDS
ACAGAACCACTGGCAACTTT+AGG 0.382460 5.2:+30330563 None:intergenic
GCGTGGCAGAGAACTGGTTT+TGG 0.384451 5.2:-30332287 MS.gene55210:CDS
GTCAGCCCCTTGAGGAAATT+GGG 0.385193 5.2:+30331836 None:intergenic
TCTAAGACCTGGCGGTTATT+GGG 0.391716 5.2:-30331090 MS.gene55210:CDS
TTATAGGGTGCGTTCGCATA+TGG 0.402852 5.2:+30331936 None:intergenic
CGCTATGTCATTTGCACCTA+GGG 0.403385 5.2:-30331381 MS.gene55210:CDS
AGGTTGCTAAGCTCCTTTGC+TGG 0.405835 5.2:-30330974 MS.gene55210:CDS
TATTCAATCTCCTAAGTTAT+GGG 0.408342 5.2:-30330390 MS.gene55210:CDS
ATAAATAAGCTCCTGGACTC+TGG 0.414706 5.2:-30330467 MS.gene55210:CDS
TCTTCCTCAAGATCCTCCTT+AGG 0.414914 5.2:+30331014 None:intergenic
ATCAAGGTAAAGAAAATTGT+TGG 0.416395 5.2:-30329507 MS.gene55210:CDS
TAATTAGCCTTCCAATGGAT+TGG 0.416920 5.2:+30331053 None:intergenic
TAATTGCTGTCAAGCAGTAT+TGG 0.427048 5.2:-30329419 MS.gene55210:CDS
AGTACAATTTGCACTTGAAA+GGG 0.428802 5.2:-30331342 MS.gene55210:CDS
ATCCTCCTTAGGTCTTTGCC+AGG 0.433073 5.2:+30331025 None:intergenic
TCAGAACTGGATCCAATATG+AGG 0.434365 5.2:-30331889 MS.gene55210:CDS
CAATTGGAGGTTACTAAGAA+AGG 0.434885 5.2:-30332248 MS.gene55210:CDS
ATTTATCAGCGAGGACTCAT+AGG 0.437788 5.2:-30330320 MS.gene55210:CDS
CCAAAGATATGCACCCCAAC+TGG 0.442920 5.2:+30331418 None:intergenic
GCATATAGTCTCTGTGGAAA+AGG 0.443799 5.2:+30330593 None:intergenic
CACCTTCAGGTCGTAAAATC+CGG 0.448926 5.2:+30329562 None:intergenic
TTGCAAGGCTTAAATACCTT+AGG 0.449525 5.2:+30332140 None:intergenic
TCAACTGTAAGACTCTTATA+GGG 0.450991 5.2:+30331921 None:intergenic
GGCACGCCGTTGATCATGGC+AGG 0.451114 5.2:+30332094 None:intergenic
CAACAGATGCTGATGATGTT+TGG 0.451762 5.2:-30330848 MS.gene55210:intron
GGCAGATGGGATTTATATGA+TGG 0.451926 5.2:-30331126 MS.gene55210:intron
GTATGTCTCAGCTGAAACTC+CGG 0.453655 5.2:+30330538 None:intergenic
GAGGTTACTAAGAAAGGTGC+TGG 0.454381 5.2:-30332242 MS.gene55210:CDS
TTAATTCCTTGGGGATCAAA+TGG 0.459096 5.2:-30331233 MS.gene55210:intron
TCTCCGTGGACTTTACGATT+AGG 0.459427 5.2:+30330623 None:intergenic
TTAGGTGCGTGGCAGAGAAC+TGG 0.459773 5.2:-30332293 MS.gene55210:CDS
AAGTACAATTTGCACTTGAA+AGG 0.461765 5.2:-30331343 MS.gene55210:CDS
CCTGCCGTCATTGGTGTCCT+AGG 0.462243 5.2:-30331314 MS.gene55210:CDS
ACAGCACTGGACACTGGTTG+TGG 0.462399 5.2:-30331759 MS.gene55210:CDS
TATGAGATGGGATACTAAAC+TGG 0.463047 5.2:-30329481 MS.gene55210:CDS
CGGCTCTTTGGCCATGGAAA+CGG 0.466135 5.2:+30331969 None:intergenic
ATGGATATGAATGCTGGTTT+GGG 0.470981 5.2:-30330428 MS.gene55210:CDS
TTGAGAAGGCTATTCAGAAC+TGG 0.479914 5.2:-30331902 MS.gene55210:CDS
GGAAATTGGGTTCCACCACC+AGG 0.486235 5.2:+30331849 None:intergenic
GGTTGCTAAGCTCCTTTGCT+GGG 0.492174 5.2:-30330973 MS.gene55210:CDS
CAAGAAAATAAATAAGCTCC+TGG 0.495511 5.2:-30330474 MS.gene55210:CDS
TGAATGAGGTCGTACGTCCT+TGG 0.496095 5.2:+30329867 None:intergenic
CTGACTGTTCCATTCTCTAT+CGG 0.496657 5.2:+30331783 None:intergenic
GTATGTTTCTCAGCTATAGT+AGG 0.501052 5.2:+30330353 None:intergenic
GTAACATACCCTTTCGGTGC+TGG 0.502252 5.2:+30331993 None:intergenic
TAATCACGGCTCTTTGGCCA+TGG 0.503657 5.2:+30331963 None:intergenic
TGGAAGGTATCGCAATATCA+TGG 0.504476 5.2:-30330447 MS.gene55210:CDS
TCATGGCACGCCGTTGATCA+TGG 0.504850 5.2:+30332090 None:intergenic
ACGACCTCATTCATAGCAAT+GGG 0.505409 5.2:-30329857 MS.gene55210:CDS
TGCGATACCTTCCAGAGTCC+AGG 0.507113 5.2:+30330456 None:intergenic
GGAAGGCTAATTACAAAGCC+TGG 0.510311 5.2:-30331043 MS.gene55210:CDS
GTCGTACGTCCTTGGATATG+TGG 0.511535 5.2:+30329875 None:intergenic
ACATTCTTCTGGAGATGGAC+CGG 0.512855 5.2:-30329581 MS.gene55210:CDS
TCAAAGGCTCCAGATGGATA+AGG 0.515562 5.2:+30331278 None:intergenic
CTTTGTAATTAGCCTTCCAA+TGG 0.517155 5.2:+30331048 None:intergenic
ACCAGGATGATAACGAAAAG+TGG 0.518679 5.2:-30330517 MS.gene55210:CDS
TACGACCTCATTCATAGCAA+TGG 0.523430 5.2:-30329858 MS.gene55210:CDS
TTCTCACCATTTGATCCCCA+AGG 0.523610 5.2:+30331227 None:intergenic
TGAGGTTGATTCAAAACCTA+AGG 0.526700 5.2:-30332156 MS.gene55210:CDS
AATATCATGGATATGAATGC+TGG 0.527971 5.2:-30330434 MS.gene55210:CDS
CAGCACTGGACACTGGTTGT+GGG 0.532258 5.2:-30331758 MS.gene55210:CDS
CGGTCTTCTTCTCCCAGCAA+AGG 0.532439 5.2:+30330961 None:intergenic
AGAAGAATGAAATTGCTGTC+TGG 0.538296 5.2:-30330938 MS.gene55210:CDS
AACGGAGTAACATACCCTTT+CGG 0.539179 5.2:+30331987 None:intergenic
GTTTGATACCAGCACCGAAA+GGG 0.539221 5.2:-30332001 MS.gene55210:CDS
AGGGGTGTACCTGCCGTCAT+TGG 0.542782 5.2:-30331323 MS.gene55210:CDS
CAAAGCCTGGCAAAGACCTA+AGG 0.543305 5.2:-30331030 MS.gene55210:CDS
TTTGCACAGGTTGCCAGTTG+GGG 0.547748 5.2:-30331431 MS.gene55210:intron
TGAAGTTGATGTCTTAATCA+AGG 0.548028 5.2:-30329523 MS.gene55210:CDS
TCTGTGATACCGATAGAGAA+TGG 0.548272 5.2:-30331792 MS.gene55210:CDS
CGATAGAGAATGGAACAGTC+AGG 0.551422 5.2:-30331782 MS.gene55210:CDS
TTAGCCTTCCAATGGATTGG+AGG 0.556029 5.2:+30331056 None:intergenic
AAATTGTTGGAGGTATGAGA+TGG 0.556242 5.2:-30329494 MS.gene55210:CDS
AGAACAATGCGCCATATCAA+AGG 0.556673 5.2:+30331262 None:intergenic
GAACAAGTGGACCGTCCTCA+TGG 0.559718 5.2:+30329454 None:intergenic
GGTATGTTACTCCGTTTCCA+TGG 0.560801 5.2:-30331980 MS.gene55210:CDS
TTTCGGGACCTCCAATCCAT+TGG 0.560894 5.2:-30331064 MS.gene55210:CDS
ACATTCATGACCCATAACTT+AGG 0.560995 5.2:+30330380 None:intergenic
TCGCTATGTCATTTGCACCT+AGG 0.561599 5.2:-30331382 MS.gene55210:CDS
TGTGCTTCATGTGAGTCCCT+AGG 0.562927 5.2:+30331365 None:intergenic
AATTGTTGGAGGTATGAGAT+GGG 0.562974 5.2:-30329493 MS.gene55210:CDS
GAACCACTGGCAACTTTAGG+AGG 0.564388 5.2:+30330566 None:intergenic
TGGAACAGTCAGGACAGCAC+TGG 0.564499 5.2:-30331772 MS.gene55210:CDS
AGAACAAAGAAAGATTGAAG+AGG 0.565209 5.2:-30330994 MS.gene55210:CDS
GGAAATGTGTTCAGATTCCC+TGG 0.566798 5.2:-30331867 MS.gene55210:CDS
AGATGACATTCTTCTGGAGA+TGG 0.567755 5.2:-30329586 MS.gene55210:CDS
GTGTTCAGATTCCCTGGTGG+TGG 0.569353 5.2:-30331861 MS.gene55210:CDS
CAGAACTGGATCCAATATGA+GGG 0.569553 5.2:-30331888 MS.gene55210:CDS
TCGATATATCGAGCCTTGCA+AGG 0.569809 5.2:+30332125 None:intergenic
TAAGAGTCTTACAGTTGAGA+AGG 0.570337 5.2:-30331916 MS.gene55210:CDS
AACTCCGGGAACAGAACCAC+TGG 0.570803 5.2:+30330553 None:intergenic
GTCAGGACAGCACTGGACAC+TGG 0.572331 5.2:-30331765 MS.gene55210:CDS
AAGGTAAAGAAAATTGTTGG+AGG 0.572644 5.2:-30329504 MS.gene55210:CDS
GGGACCTCCAATCCATTGGA+AGG 0.573733 5.2:-30331060 MS.gene55210:CDS
TAAGGTATTTAAGCCTTGCA+AGG 0.576659 5.2:-30332138 MS.gene55210:CDS
TATGTCTCAGCTGAAACTCC+GGG 0.580149 5.2:+30330539 None:intergenic
ATAAGCTCCTGGACTCTGGA+AGG 0.581133 5.2:-30330463 MS.gene55210:CDS
GTGGAACCCAATTTCCTCAA+GGG 0.584099 5.2:-30331842 MS.gene55210:CDS
ACACGCCCTGCCATGATCAA+CGG 0.586626 5.2:-30332100 MS.gene55210:CDS
GAAAGCACCCAATAACCGCC+AGG 0.587918 5.2:+30331083 None:intergenic
AAAATATGATTTATCGAGAG+AGG 0.590909 5.2:-30332055 MS.gene55210:CDS
TTAAGCTTTGATTCTCACCA+TGG 0.593567 5.2:-30332200 MS.gene55210:CDS
AAGACCTAAGGAGGATCTTG+AGG 0.593947 5.2:-30331018 MS.gene55210:CDS
AGCACTGGACACTGGTTGTG+GGG 0.594228 5.2:-30331757 MS.gene55210:intron
GGTGGAACCCAATTTCCTCA+AGG 0.602922 5.2:-30331843 MS.gene55210:CDS
AGAAGTTAGCAAAATTGATG+AGG 0.606974 5.2:-30332174 MS.gene55210:CDS
TCTCGTTGCTTAATTCCTTG+GGG 0.606987 5.2:-30331242 MS.gene55210:CDS
TGTTTGATACCAGCACCGAA+AGG 0.609194 5.2:-30332002 MS.gene55210:CDS
AGTTTCAGCTGAGACATACC+AGG 0.611606 5.2:-30330534 MS.gene55210:CDS
GTTCCTCCTAAAGTTGCCAG+TGG 0.612508 5.2:-30330569 MS.gene55210:CDS
CCTAGGACACCAATGACGGC+AGG 0.614190 5.2:+30331314 None:intergenic
TACTAAACTGGTTGACCATG+AGG 0.614521 5.2:-30329469 MS.gene55210:CDS
TTTACGATTAGGAGTAACAC+AGG 0.615416 5.2:+30330634 None:intergenic
AGCTTTGATTCTCACCATGG+TGG 0.615893 5.2:-30332197 MS.gene55210:CDS
TGGGCTCTTTAGTCTGTACA+AGG 0.622657 5.2:-30329838 MS.gene55210:CDS
ATATATTTGTCAGCCCCTTG+AGG 0.625081 5.2:+30331828 None:intergenic
AGAGCCCATTGCTATGAATG+AGG 0.631489 5.2:+30329853 None:intergenic
GCACGCCGTTGATCATGGCA+GGG 0.632559 5.2:+30332095 None:intergenic
GGTTCCTAGGACACCAATGA+CGG 0.632608 5.2:+30331310 None:intergenic
TGGAACCCAATTTCCTCAAG+GGG 0.632865 5.2:-30331841 MS.gene55210:CDS
AGCCTGGCAAAGACCTAAGG+AGG 0.634638 5.2:-30331027 MS.gene55210:CDS
GCCATATCAAAGGCTCCAGA+TGG 0.638024 5.2:+30331272 None:intergenic
GTACAATTTGCACTTGAAAG+GGG 0.638641 5.2:-30331341 MS.gene55210:CDS
GTTGATCGAGTTCTAAGACC+TGG 0.639321 5.2:-30331101 MS.gene55210:CDS
TCTTCTACATATTAGGTGCG+TGG 0.640208 5.2:-30332304 MS.gene55210:CDS
TGTAACTTCTCTTCTTCACG+AGG 0.648313 5.2:+30332026 None:intergenic
GGAACTGCATATAGTCTCTG+TGG 0.648475 5.2:+30330587 None:intergenic
ACTCCTAATCGTAAAGTCCA+CGG 0.651226 5.2:-30330626 MS.gene55210:CDS
AAACTGGTTGACCATGAGGA+CGG 0.653450 5.2:-30329465 MS.gene55210:CDS
TCGCATATGGAACATAATCA+CGG 0.658822 5.2:+30331949 None:intergenic
AGGTTACTAAGAAAGGTGCT+GGG 0.674354 5.2:-30332241 MS.gene55210:CDS
GAAATTGGGTTCCACCACCA+GGG 0.677362 5.2:+30331850 None:intergenic
TTAAGACATCAACTTCATCA+CGG 0.685496 5.2:+30329529 None:intergenic
CTCGGTGTCATTTATCAGCG+AGG 0.696680 5.2:-30330329 MS.gene55210:CDS
GATCGAGTTCTAAGACCTGG+CGG 0.699414 5.2:-30331098 MS.gene55210:CDS
GTAACTTCTCTTCTTCACGA+GGG 0.701314 5.2:+30332027 None:intergenic
GAGTGGTTATTGTGTTGACG+TGG 0.705177 5.2:+30329380 None:intergenic
GAAAAGGCTTAAGATCTCCG+TGG 0.706045 5.2:+30330609 None:intergenic
ATAGCTGAGAAACATACACT+CGG 0.706522 5.2:-30330347 MS.gene55210:CDS
AATGTGTTCAGATTCCCTGG+TGG 0.757911 5.2:-30331864 MS.gene55210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGCATAAATAAATAAATA+AGG + chr5.2:30331847-30331866 None:intergenic 15.0%
!! TTGAATAACCATATAATTAA+AGG + chr5.2:30331967-30331986 None:intergenic 15.0%
!! TGAGTATTCCTTTAATTATA+TGG - chr5.2:30331956-30331975 MS.gene55210:CDS 20.0%
!!! AATCATATTTTGTCTAGAAA+AGG + chr5.2:30329702-30329721 None:intergenic 20.0%
! AAAATATGATTTATCGAGAG+AGG - chr5.2:30329711-30329730 MS.gene55210:intron 25.0%
! AATGAATGGAATATCAACAA+TGG + chr5.2:30330988-30331007 None:intergenic 25.0%
! ATCAAGGTAAAGAAAATTGT+TGG - chr5.2:30332259-30332278 MS.gene55210:CDS 25.0%
! GAATGCATTATAAGTTGTAT+AGG - chr5.2:30332016-30332035 MS.gene55210:CDS 25.0%
! GAGATAGAGATAAACATATA+CGG - chr5.2:30331683-30331702 MS.gene55210:intron 25.0%
! TATTCAATCTCCTAAGTTAT+GGG - chr5.2:30331376-30331395 MS.gene55210:CDS 25.0%
! TGAGAATCAAAGCTTAAATT+TGG + chr5.2:30329563-30329582 None:intergenic 25.0%
! TGTTAGTAGAACTAAATGAA+TGG + chr5.2:30331002-30331021 None:intergenic 25.0%
! TTATAATGCATTCTATGCAA+AGG + chr5.2:30332009-30332028 None:intergenic 25.0%
!!! TGTTGTTTCTTCTACATATT+AGG - chr5.2:30329455-30329474 MS.gene55210:CDS 25.0%
AAGAGAGAAGTAAAACTAAG+TGG + chr5.2:30332088-30332107 None:intergenic 30.0%
AAGGAAAAACATGTGAGAAA+AGG + chr5.2:30331828-30331847 None:intergenic 30.0%
AAGGTAAAGAAAATTGTTGG+AGG - chr5.2:30332262-30332281 MS.gene55210:CDS 30.0%
AAGTACAATTTGCACTTGAA+AGG - chr5.2:30330423-30330442 MS.gene55210:CDS 30.0%
AATATCATGGATATGAATGC+TGG - chr5.2:30331332-30331351 MS.gene55210:CDS 30.0%
ACAAAAATCTTGTACTGAGT+TGG - chr5.2:30331067-30331086 MS.gene55210:CDS 30.0%
AGAACAAAGAAAGATTGAAG+AGG - chr5.2:30330772-30330791 MS.gene55210:intron 30.0%
AGAAGTTAGCAAAATTGATG+AGG - chr5.2:30329592-30329611 MS.gene55210:CDS 30.0%
AGGAAAAACATGTGAGAAAA+GGG + chr5.2:30331827-30331846 None:intergenic 30.0%
AGTACAATTTGCACTTGAAA+GGG - chr5.2:30330424-30330443 MS.gene55210:CDS 30.0%
AGTACTACTTCCAGTAAATA+AGG - chr5.2:30330594-30330613 MS.gene55210:CDS 30.0%
ATAAAATTGCCTTATCCATC+TGG - chr5.2:30330479-30330498 MS.gene55210:CDS 30.0%
ATTAGCAGTATAGTTAGTTC+AGG - chr5.2:30330102-30330121 MS.gene55210:intron 30.0%
CAAGAAAATAAATAAGCTCC+TGG - chr5.2:30331292-30331311 MS.gene55210:CDS 30.0%
CTATTCAATCTCCTAAGTTA+TGG - chr5.2:30331375-30331394 MS.gene55210:CDS 30.0%
GACACTCTGAATAAAATAGA+AGG + chr5.2:30331507-30331526 None:intergenic 30.0%
TAACATAGATGACATTCTTC+TGG - chr5.2:30332174-30332193 MS.gene55210:CDS 30.0%
TATTTATGCCTTTATGATCC+AGG - chr5.2:30331855-30331874 MS.gene55210:CDS 30.0%
TCAACTGTAAGACTCTTATA+GGG + chr5.2:30329848-30329867 None:intergenic 30.0%
TCATAGGCATTTATCATGAT+TGG - chr5.2:30331462-30331481 MS.gene55210:intron 30.0%
TGCATTATAAGTTGTATAGG+TGG - chr5.2:30332019-30332038 MS.gene55210:CDS 30.0%
TTAAGACATCAACTTCATCA+CGG + chr5.2:30332240-30332259 None:intergenic 30.0%
TTAGCAGTATAGTTAGTTCA+GGG - chr5.2:30330103-30330122 MS.gene55210:intron 30.0%
TTGTCATTGTGAATTCCTTA+GGG - chr5.2:30330037-30330056 MS.gene55210:intron 30.0%
TTTGTCATTGTGAATTCCTT+AGG - chr5.2:30330036-30330055 MS.gene55210:intron 30.0%
! AAAGGGAGATCTTTTACAAT+TGG - chr5.2:30329502-30329521 MS.gene55210:CDS 30.0%
! AAATAAGGAAAGTGCATCTT+GGG - chr5.2:30330609-30330628 MS.gene55210:CDS 30.0%
! ACAGCAATTAGTATCTTTTC+AGG + chr5.2:30332337-30332356 None:intergenic 30.0%
! AGATGGATAAGGCAATTTTA+TGG + chr5.2:30330480-30330499 None:intergenic 30.0%
! ATTTTGTCTAGAAAAGGTCA+TGG + chr5.2:30329696-30329715 None:intergenic 30.0%
! TAAATAAGGAAAGTGCATCT+TGG - chr5.2:30330608-30330627 MS.gene55210:CDS 30.0%
! TGCATTTGATGATTAGATAC+AGG + chr5.2:30332150-30332169 None:intergenic 30.0%
!! TACAAAGTGTTGTCAAATAG+AGG - chr5.2:30330203-30330222 MS.gene55210:intron 30.0%
!! TGAAGTTGATGTCTTAATCA+AGG - chr5.2:30332243-30332262 MS.gene55210:CDS 30.0%
AATGAATACAACTGGCAAAG+GGG + chr5.2:30332112-30332131 None:intergenic 35.0%
AATTGCTGTCAAGCAGTATT+GGG - chr5.2:30332348-30332367 MS.gene55210:CDS 35.0%
ACATTCATGACCCATAACTT+AGG + chr5.2:30331389-30331408 None:intergenic 35.0%
AGAAGAATGAAATTGCTGTC+TGG - chr5.2:30330828-30330847 MS.gene55210:intron 35.0%
AGAATGAATACAACTGGCAA+AGG + chr5.2:30332114-30332133 None:intergenic 35.0%
ATAGCTGAGAAACATACACT+CGG - chr5.2:30331419-30331438 MS.gene55210:CDS 35.0%
ATGGCTAAACCAATTTCTTC+TGG - chr5.2:30329386-30329405 MS.gene55210:CDS 35.0%
CAATTGGAGGTTACTAAGAA+AGG - chr5.2:30329518-30329537 MS.gene55210:CDS 35.0%
CTACGTATCTGTAATGTGTA+AGG - chr5.2:30330308-30330327 MS.gene55210:CDS 35.0%
CTCAACTGTAAGACTCTTAT+AGG + chr5.2:30329849-30329868 None:intergenic 35.0%
GAATGAATACAACTGGCAAA+GGG + chr5.2:30332113-30332132 None:intergenic 35.0%
GACACAAGAATGAATACAAC+TGG + chr5.2:30332120-30332139 None:intergenic 35.0%
GACAGCAATTTCATTCTTCT+CGG + chr5.2:30330828-30330847 None:intergenic 35.0%
GTACAATTTGCACTTGAAAG+GGG - chr5.2:30330425-30330444 MS.gene55210:CDS 35.0%
GTATGTTTCTCAGCTATAGT+AGG + chr5.2:30331416-30331435 None:intergenic 35.0%
GTGCAGATCTTTATAGTAGT+TGG - chr5.2:30329428-30329447 MS.gene55210:CDS 35.0%
GTTCTACTACCAGAAGAAAT+TGG + chr5.2:30329398-30329417 None:intergenic 35.0%
TAAGAGTCTTACAGTTGAGA+AGG - chr5.2:30329850-30329869 MS.gene55210:CDS 35.0%
TAATTGCTGTCAAGCAGTAT+TGG - chr5.2:30332347-30332366 MS.gene55210:CDS 35.0%
TATGAGATGGGATACTAAAC+TGG - chr5.2:30332285-30332304 MS.gene55210:CDS 35.0%
TCGCATATGGAACATAATCA+CGG + chr5.2:30329820-30329839 None:intergenic 35.0%
TCGTTGCAGGTATAAGAAAA+TGG - chr5.2:30331106-30331125 MS.gene55210:CDS 35.0%
TGAACACATTTCCCTCATAT+TGG + chr5.2:30329892-30329911 None:intergenic 35.0%
TTAATTCCTTGGGGATCAAA+TGG - chr5.2:30330533-30330552 MS.gene55210:CDS 35.0%
TTAGCACAACTTTCTGTGAT+CGG - chr5.2:30331797-30331816 MS.gene55210:CDS 35.0%
TTCTCGTTGCTTAATTCCTT+GGG - chr5.2:30330523-30330542 MS.gene55210:CDS 35.0%
TTGCAAGGCTTAAATACCTT+AGG + chr5.2:30329629-30329648 None:intergenic 35.0%
TTTACGATTAGGAGTAACAC+AGG + chr5.2:30331135-30331154 None:intergenic 35.0%
! AAATTGTTGGAGGTATGAGA+TGG - chr5.2:30332272-30332291 MS.gene55210:CDS 35.0%
! AAGGCAATTTTATGGTTCCT+AGG + chr5.2:30330472-30330491 None:intergenic 35.0%
! AATCTTGTACTGAGTTGGAA+TGG - chr5.2:30331072-30331091 MS.gene55210:CDS 35.0%
! AATTGTTGGAGGTATGAGAT+GGG - chr5.2:30332273-30332292 MS.gene55210:CDS 35.0%
! CGTTTTCATGCAATACATCA+AGG + chr5.2:30331758-30331777 None:intergenic 35.0%
! GATGCACTTTCCTTATTTAC+TGG + chr5.2:30330607-30330626 None:intergenic 35.0%
! TAAGGTATTTAAGCCTTGCA+AGG - chr5.2:30329628-30329647 MS.gene55210:intron 35.0%
! TGAGGTTGATTCAAAACCTA+AGG - chr5.2:30329610-30329629 MS.gene55210:intron 35.0%
! TTAAGCTTTGATTCTCACCA+TGG - chr5.2:30329566-30329585 MS.gene55210:CDS 35.0%
!! AAGCTTTTTCCACATATCCA+AGG - chr5.2:30331882-30331901 MS.gene55210:CDS 35.0%
!! AGTATCTTTTCAGGAACAAG+TGG + chr5.2:30332328-30332347 None:intergenic 35.0%
!! ATGGATATGAATGCTGGTTT+GGG - chr5.2:30331338-30331357 MS.gene55210:CDS 35.0%
!! CTTTGTAATTAGCCTTCCAA+TGG + chr5.2:30330721-30330740 None:intergenic 35.0%
!! TAATTAGCCTTCCAATGGAT+TGG + chr5.2:30330716-30330735 None:intergenic 35.0%
AACGGAGTAACATACCCTTT+CGG + chr5.2:30329782-30329801 None:intergenic 40.0%
ACGACCTCATTCATAGCAAT+GGG - chr5.2:30331909-30331928 MS.gene55210:CDS 40.0%
ACTCCTAATCGTAAAGTCCA+CGG - chr5.2:30331140-30331159 MS.gene55210:intron 40.0%
AGAACAATGCGCCATATCAA+AGG + chr5.2:30330507-30330526 None:intergenic 40.0%
AGAATACGATACAAGCCCTA+AGG + chr5.2:30330055-30330074 None:intergenic 40.0%
ATAAATAAGCTCCTGGACTC+TGG - chr5.2:30331299-30331318 MS.gene55210:CDS 40.0%
ATATATTTGTCAGCCCCTTG+AGG + chr5.2:30329941-30329960 None:intergenic 40.0%
ATTTATCAGCGAGGACTCAT+AGG - chr5.2:30331446-30331465 MS.gene55210:intron 40.0%
CAGAACTGGATCCAATATGA+GGG - chr5.2:30329878-30329897 MS.gene55210:CDS 40.0%
CGAAGTAGACAAGAAGATTC+TGG - chr5.2:30330878-30330897 MS.gene55210:CDS 40.0%
CTGACTGTTCCATTCTCTAT+CGG + chr5.2:30329986-30330005 None:intergenic 40.0%
GCATATAGTCTCTGTGGAAA+AGG + chr5.2:30331176-30331195 None:intergenic 40.0%
GGCAGATGGGATTTATATGA+TGG - chr5.2:30330640-30330659 MS.gene55210:CDS 40.0%
GGGTTGTCAAATAGTAGCTA+TGG - chr5.2:30330123-30330142 MS.gene55210:intron 40.0%
GTAACTTCTCTTCTTCACGA+GGG + chr5.2:30329742-30329761 None:intergenic 40.0%
GTGATGTTAGTCGCAGATTA+TGG + chr5.2:30330270-30330289 None:intergenic 40.0%
GTTCTCGTTGCTTAATTCCT+TGG - chr5.2:30330522-30330541 MS.gene55210:CDS 40.0%
TACGACCTCATTCATAGCAA+TGG - chr5.2:30331908-30331927 MS.gene55210:CDS 40.0%
TACTAAACTGGTTGACCATG+AGG - chr5.2:30332297-30332316 MS.gene55210:CDS 40.0%
TAGCACAACTTTCTGTGATC+GGG - chr5.2:30331798-30331817 MS.gene55210:CDS 40.0%
TCAGAACTGGATCCAATATG+AGG - chr5.2:30329877-30329896 MS.gene55210:CDS 40.0%
TCTCGTTGCTTAATTCCTTG+GGG - chr5.2:30330524-30330543 MS.gene55210:CDS 40.0%
TCTGTGATACCGATAGAGAA+TGG - chr5.2:30329974-30329993 MS.gene55210:intron 40.0%
TCTTCTACATATTAGGTGCG+TGG - chr5.2:30329462-30329481 MS.gene55210:CDS 40.0%
TGTAACTTCTCTTCTTCACG+AGG + chr5.2:30329743-30329762 None:intergenic 40.0%
TTGAGAAGGCTATTCAGAAC+TGG - chr5.2:30329864-30329883 MS.gene55210:CDS 40.0%
! ACCAGGATGATAACGAAAAG+TGG - chr5.2:30331249-30331268 MS.gene55210:CDS 40.0%
! AGATGACATTCTTCTGGAGA+TGG - chr5.2:30332180-30332199 MS.gene55210:CDS 40.0%
! AGTGCATCTTGGGTTGTTAT+TGG - chr5.2:30330619-30330638 MS.gene55210:CDS 40.0%
! CAACAGATGCTGATGATGTT+TGG - chr5.2:30330918-30330937 MS.gene55210:CDS 40.0%
! CATGGATATGAATGCTGGTT+TGG - chr5.2:30331337-30331356 MS.gene55210:CDS 40.0%
! GGGAGATCTTTTACAATTGG+AGG - chr5.2:30329505-30329524 MS.gene55210:CDS 40.0%
! TTGGGTTGTTATTGGCAGAT+GGG - chr5.2:30330627-30330646 MS.gene55210:CDS 40.0%
! TTTTGCTAACTTCTCCACCA+TGG + chr5.2:30329586-30329605 None:intergenic 40.0%
!! AGGTTACTAAGAAAGGTGCT+GGG - chr5.2:30329525-30329544 MS.gene55210:CDS 40.0%
!! TCCACTTTTCGTTATCATCC+TGG + chr5.2:30331253-30331272 None:intergenic 40.0%
!! TGGAAGGTATCGCAATATCA+TGG - chr5.2:30331319-30331338 MS.gene55210:CDS 40.0%
!! TGTGTAAGGTTGTTTTGCAC+AGG - chr5.2:30330322-30330341 MS.gene55210:CDS 40.0%
!!! CAGAGAACTGGTTTTGGAAA+GGG - chr5.2:30329485-30329504 MS.gene55210:CDS 40.0%
!!! GGATTTGTTTTTGTCGTTGC+AGG - chr5.2:30331093-30331112 MS.gene55210:CDS 40.0%
AAACTGGTTGACCATGAGGA+CGG - chr5.2:30332301-30332320 MS.gene55210:CDS 45.0%
AAGACCTAAGGAGGATCTTG+AGG - chr5.2:30330748-30330767 MS.gene55210:intron 45.0%
AATGTGTTCAGATTCCCTGG+TGG - chr5.2:30329902-30329921 MS.gene55210:intron 45.0%
ACAGAACCACTGGCAACTTT+AGG + chr5.2:30331206-30331225 None:intergenic 45.0%
AGAGCCCATTGCTATGAATG+AGG + chr5.2:30331916-30331935 None:intergenic 45.0%
AGTTTCAGCTGAGACATACC+AGG - chr5.2:30331232-30331251 MS.gene55210:intron 45.0%
CACCTTCAGGTCGTAAAATC+CGG + chr5.2:30332207-30332226 None:intergenic 45.0%
CGATAGAGAATGGAACAGTC+AGG - chr5.2:30329984-30330003 MS.gene55210:intron 45.0%
GAAAAGGCTTAAGATCTCCG+TGG + chr5.2:30331160-30331179 None:intergenic 45.0%
GCTTCACACCTGGATCATAA+AGG + chr5.2:30331866-30331885 None:intergenic 45.0%
GGAAATGTGTTCAGATTCCC+TGG - chr5.2:30329899-30329918 MS.gene55210:intron 45.0%
GGAACATAATCACGGCTCTT+TGG + chr5.2:30329812-30329831 None:intergenic 45.0%
GGAACTGCATATAGTCTCTG+TGG + chr5.2:30331182-30331201 None:intergenic 45.0%
GGAAGGCTAATTACAAAGCC+TGG - chr5.2:30330723-30330742 MS.gene55210:intron 45.0%
GGTATGTTACTCCGTTTCCA+TGG - chr5.2:30329786-30329805 MS.gene55210:intron 45.0%
GTATGTCTCAGCTGAAACTC+CGG + chr5.2:30331231-30331250 None:intergenic 45.0%
GTGGAACCCAATTTCCTCAA+GGG - chr5.2:30329924-30329943 MS.gene55210:intron 45.0%
TATGTCTCAGCTGAAACTCC+GGG + chr5.2:30331230-30331249 None:intergenic 45.0%
TCAAAGGCTCCAGATGGATA+AGG + chr5.2:30330491-30330510 None:intergenic 45.0%
TCGATATATCGAGCCTTGCA+AGG + chr5.2:30329644-30329663 None:intergenic 45.0%
TCTCCGTGGACTTTACGATT+AGG + chr5.2:30331146-30331165 None:intergenic 45.0%
TCTTCCTCAAGATCCTCCTT+AGG + chr5.2:30330755-30330774 None:intergenic 45.0%
TGGAACCCAATTTCCTCAAG+GGG - chr5.2:30329925-30329944 MS.gene55210:intron 45.0%
TGGGCTCTTTAGTCTGTACA+AGG - chr5.2:30331928-30331947 MS.gene55210:CDS 45.0%
TGTGGAAAAAGCTTCACACC+TGG + chr5.2:30331876-30331895 None:intergenic 45.0%
TTATAGGGTGCGTTCGCATA+TGG + chr5.2:30329833-30329852 None:intergenic 45.0%
TTCTCACCATTTGATCCCCA+AGG + chr5.2:30330542-30330561 None:intergenic 45.0%
! ACATTCTTCTGGAGATGGAC+CGG - chr5.2:30332185-30332204 MS.gene55210:CDS 45.0%
! AGCTTTGATTCTCACCATGG+TGG - chr5.2:30329569-30329588 MS.gene55210:CDS 45.0%
! CGCTATGTCATTTGCACCTA+GGG - chr5.2:30330385-30330404 MS.gene55210:CDS 45.0%
! CTTGGGTTGTTATTGGCAGA+TGG - chr5.2:30330626-30330645 MS.gene55210:CDS 45.0%
! GAGGTTACTAAGAAAGGTGC+TGG - chr5.2:30329524-30329543 MS.gene55210:CDS 45.0%
! GTTTGATACCAGCACCGAAA+GGG - chr5.2:30329765-30329784 MS.gene55210:intron 45.0%
! TCCATCTGGAGCCTTTGATA+TGG - chr5.2:30330493-30330512 MS.gene55210:CDS 45.0%
! TCGCTATGTCATTTGCACCT+AGG - chr5.2:30330384-30330403 MS.gene55210:CDS 45.0%
! TCTAAGACCTGGCGGTTATT+GGG - chr5.2:30330676-30330695 MS.gene55210:intron 45.0%
! TGTTTGATACCAGCACCGAA+AGG - chr5.2:30329764-30329783 MS.gene55210:intron 45.0%
! TTTTGCACAGGTTGCCAGTT+GGG - chr5.2:30330334-30330353 MS.gene55210:CDS 45.0%
!! GTTGATCGAGTTCTAAGACC+TGG - chr5.2:30330665-30330684 MS.gene55210:intron 45.0%
!! TTAGCCTTCCAATGGATTGG+AGG + chr5.2:30330713-30330732 None:intergenic 45.0%
!! TTCTAAGACCTGGCGGTTAT+TGG - chr5.2:30330675-30330694 MS.gene55210:intron 45.0%
!!! GCAGAGAACTGGTTTTGGAA+AGG - chr5.2:30329484-30329503 MS.gene55210:CDS 45.0%
AGGTTGCTAAGCTCCTTTGC+TGG - chr5.2:30330792-30330811 MS.gene55210:intron 50.0%
ATAAGCTCCTGGACTCTGGA+AGG - chr5.2:30331303-30331322 MS.gene55210:CDS 50.0%
ATCCTCCTTAGGTCTTTGCC+AGG + chr5.2:30330744-30330763 None:intergenic 50.0%
CAAAGCCTGGCAAAGACCTA+AGG - chr5.2:30330736-30330755 MS.gene55210:intron 50.0%
CCAAAGATATGCACCCCAAC+TGG + chr5.2:30330351-30330370 None:intergenic 50.0%
CCAGTTGGGGTGCATATCTT+TGG - chr5.2:30330348-30330367 MS.gene55210:CDS 50.0%
CGGAATATCACAGCACCTTC+AGG + chr5.2:30332220-30332239 None:intergenic 50.0%
GAAATTGGGTTCCACCACCA+GGG + chr5.2:30329919-30329938 None:intergenic 50.0%
GAACCACTGGCAACTTTAGG+AGG + chr5.2:30331203-30331222 None:intergenic 50.0%
GCCATATCAAAGGCTCCAGA+TGG + chr5.2:30330497-30330516 None:intergenic 50.0%
GGTGGAACCCAATTTCCTCA+AGG - chr5.2:30329923-30329942 MS.gene55210:intron 50.0%
GGTTCCTAGGACACCAATGA+CGG + chr5.2:30330459-30330478 None:intergenic 50.0%
GGTTGCTAAGCTCCTTTGCT+GGG - chr5.2:30330793-30330812 MS.gene55210:intron 50.0%
GTCAGCCCCTTGAGGAAATT+GGG + chr5.2:30329933-30329952 None:intergenic 50.0%
GTCGTACGTCCTTGGATATG+TGG + chr5.2:30331894-30331913 None:intergenic 50.0%
GTTCCTCCTAAAGTTGCCAG+TGG - chr5.2:30331197-30331216 MS.gene55210:intron 50.0%
TAATCACGGCTCTTTGGCCA+TGG + chr5.2:30329806-30329825 None:intergenic 50.0%
TGAATGAGGTCGTACGTCCT+TGG + chr5.2:30331902-30331921 None:intergenic 50.0%
TGGCGGTTATTGGGTGCTTT+CGG - chr5.2:30330685-30330704 MS.gene55210:intron 50.0%
TGTCAGCCCCTTGAGGAAAT+TGG + chr5.2:30329934-30329953 None:intergenic 50.0%
TGTGCTTCATGTGAGTCCCT+AGG + chr5.2:30330404-30330423 None:intergenic 50.0%
TTTCGGGACCTCCAATCCAT+TGG - chr5.2:30330702-30330721 MS.gene55210:intron 50.0%
TTTGCACAGGTTGCCAGTTG+GGG - chr5.2:30330335-30330354 MS.gene55210:CDS 50.0%
! GACCGGATTTTACGACCTGA+AGG - chr5.2:30332202-30332221 MS.gene55210:CDS 50.0%
! GTAACATACCCTTTCGGTGC+TGG + chr5.2:30329776-30329795 None:intergenic 50.0%
! GTTTTGCACAGGTTGCCAGT+TGG - chr5.2:30330333-30330352 MS.gene55210:CDS 50.0%
!! CTCGGTGTCATTTATCAGCG+AGG - chr5.2:30331437-30331456 MS.gene55210:intron 50.0%
!! GATCGAGTTCTAAGACCTGG+CGG - chr5.2:30330668-30330687 MS.gene55210:intron 50.0%
AACTCCGGGAACAGAACCAC+TGG + chr5.2:30331216-30331235 None:intergenic 55.0%
ACACGCCCTGCCATGATCAA+CGG - chr5.2:30329666-30329685 MS.gene55210:intron 55.0%
AGCCTGGCAAAGACCTAAGG+AGG - chr5.2:30330739-30330758 MS.gene55210:intron 55.0%
CGGCTCTTTGGCCATGGAAA+CGG + chr5.2:30329800-30329819 None:intergenic 55.0%
CGGTCTTCTTCTCCCAGCAA+AGG + chr5.2:30330808-30330827 None:intergenic 55.0%
GAACAAGTGGACCGTCCTCA+TGG + chr5.2:30332315-30332334 None:intergenic 55.0%
GGAAATTGGGTTCCACCACC+AGG + chr5.2:30329920-30329939 None:intergenic 55.0%
GGCGGTTATTGGGTGCTTTC+GGG - chr5.2:30330686-30330705 MS.gene55210:intron 55.0%
GGGACCTCCAATCCATTGGA+AGG - chr5.2:30330706-30330725 MS.gene55210:intron 55.0%
GTGTTCAGATTCCCTGGTGG+TGG - chr5.2:30329905-30329924 MS.gene55210:intron 55.0%
TCATGGCACGCCGTTGATCA+TGG + chr5.2:30329679-30329698 None:intergenic 55.0%
TGCGATACCTTCCAGAGTCC+AGG + chr5.2:30331313-30331332 None:intergenic 55.0%
TGGAACAGTCAGGACAGCAC+TGG - chr5.2:30329994-30330013 MS.gene55210:intron 55.0%
TTAGGTGCGTGGCAGAGAAC+TGG - chr5.2:30329473-30329492 MS.gene55210:CDS 55.0%
! ACAGCACTGGACACTGGTTG+TGG - chr5.2:30330007-30330026 MS.gene55210:intron 55.0%
! AGCACTGGACACTGGTTGTG+GGG - chr5.2:30330009-30330028 MS.gene55210:intron 55.0%
! CAGCACTGGACACTGGTTGT+GGG - chr5.2:30330008-30330027 MS.gene55210:intron 55.0%
! GTTGCCAGTGGTTCTGTTCC+CGG - chr5.2:30331209-30331228 MS.gene55210:intron 55.0%
!! GAAAGCACCCAATAACCGCC+AGG + chr5.2:30330686-30330705 None:intergenic 55.0%
!! GCGTGGCAGAGAACTGGTTT+TGG - chr5.2:30329479-30329498 MS.gene55210:CDS 55.0%
CCTAGGACACCAATGACGGC+AGG + chr5.2:30330455-30330474 None:intergenic 60.0%
GCACGCCGTTGATCATGGCA+GGG + chr5.2:30329674-30329693 None:intergenic 60.0%
! AGGGGTGTACCTGCCGTCAT+TGG - chr5.2:30330443-30330462 MS.gene55210:CDS 60.0%
! CCTGCCGTCATTGGTGTCCT+AGG - chr5.2:30330452-30330471 MS.gene55210:CDS 60.0%
! GTCAGGACAGCACTGGACAC+TGG - chr5.2:30330001-30330020 MS.gene55210:intron 60.0%
GGCACGCCGTTGATCATGGC+AGG + chr5.2:30329675-30329694 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 30329386 30332402 30329386 ID=MS.gene55210
chr5.2 mRNA 30329386 30332402 30329386 ID=MS.gene55210.t1;Parent=MS.gene55210
chr5.2 exon 30331758 30332402 30331758 ID=MS.gene55210.t1.exon1;Parent=MS.gene55210.t1
chr5.2 CDS 30331758 30332402 30331758 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
chr5.2 exon 30331234 30331444 30331234 ID=MS.gene55210.t1.exon2;Parent=MS.gene55210.t1
chr5.2 CDS 30331234 30331444 30331234 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
chr5.2 exon 30330849 30331143 30330849 ID=MS.gene55210.t1.exon3;Parent=MS.gene55210.t1
chr5.2 CDS 30330849 30331143 30330849 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
chr5.2 exon 30330305 30330673 30330305 ID=MS.gene55210.t1.exon4;Parent=MS.gene55210.t1
chr5.2 CDS 30330305 30330673 30330305 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
chr5.2 exon 30329834 30329911 30329834 ID=MS.gene55210.t1.exon5;Parent=MS.gene55210.t1
chr5.2 CDS 30329834 30329911 30329834 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
chr5.2 exon 30329386 30329617 30329386 ID=MS.gene55210.t1.exon6;Parent=MS.gene55210.t1
chr5.2 CDS 30329386 30329617 30329386 ID=cds.MS.gene55210.t1;Parent=MS.gene55210.t1
Gene Sequence

>MS.gene55210

ATGGCTAAACCAATTTCTTCTGGTAGTAGAACTAGAAGCTTTGTGCAGATCTTTATAGTAGTTGGTCTATGTTGTTTCTTCTACATATTAGGTGCGTGGCAGAGAACTGGTTTTGGAAAGGGAGATCTTTTACAATTGGAGGTTACTAAGAAAGGTGCTGGGTGTGATATTGTTCCAAATTTAAGCTTTGATTCTCACCATGGTGGAGAAGTTAGCAAAATTGATGAGGTTGATTCAAAACCTAAGGTATTTAAGCCTTGCAAGGCTCGATATATCGATTACACGCCCTGCCATGATCAACGGCGTGCCATGACCTTTTCTAGACAAAATATGATTTATCGAGAGAGGCATTGCCCTCGTGAAGAAGAGAAGTTACATTGTTTGATACCAGCACCGAAAGGGTATGTTACTCCGTTTCCATGGCCAAAGAGCCGTGATTATGTTCCATATGCGAACGCACCCTATAAGAGTCTTACAGTTGAGAAGGCTATTCAGAACTGGATCCAATATGAGGGAAATGTGTTCAGATTCCCTGGTGGTGGAACCCAATTTCCTCAAGGGGCTGACAAATATATTGATCAAATTGCTTCTGTGATACCGATAGAGAATGGAACAGTCAGGACAGCACTGGACACTGGTTGTGGGGTACGTTTGTCATTGTGAATTCCTTAGGGCTTGTATCGTATTCTTTTGTCATTTTTGTTCATGTTAATTTGATTAGCAGTATAGTTAGTTCAGGGTTGTCAAATAGTAGCTATGGTGCTATAGCATAGCAGTATTTGAACAAATCGCTATTGCTATGTAATACGCTATATAGTACAAAGTGTTGTCAAATAGAGGCACTATAGCACTGTAGTCGAATTTGAACAAACAAATATTTTCCATAATCTGCGACTAACATCACTGAGTTAGTGTGTTTTAGCTACGTATCTGTAATGTGTAAGGTTGTTTTGCACAGGTTGCCAGTTGGGGTGCATATCTTTGGAGCAGAAATGTTATCGCTATGTCATTTGCACCTAGGGACTCACATGAAGCACAAGTACAATTTGCACTTGAAAGGGGTGTACCTGCCGTCATTGGTGTCCTAGGAACCATAAAATTGCCTTATCCATCTGGAGCCTTTGATATGGCGCATTGTTCTCGTTGCTTAATTCCTTGGGGATCAAATGGTGAGAAATTTACATTAAGAACTATAATTTTTCTTCTGAAGTACTACTTCCAGTAAATAAGGAAAGTGCATCTTGGGTTGTTATTGGCAGATGGGATTTATATGATGGAAGTTGATCGAGTTCTAAGACCTGGCGGTTATTGGGTGCTTTCGGGACCTCCAATCCATTGGAAGGCTAATTACAAAGCCTGGCAAAGACCTAAGGAGGATCTTGAGGAAGAACAAAGAAAGATTGAAGAGGTTGCTAAGCTCCTTTGCTGGGAGAAGAAGACCGAGAAGAATGAAATTGCTGTCTGGCAGAAAACTATTGATTCTGAAACATGTCGAAGTAGACAAGAAGATTCTGGTGCGAAGTTCTGTGAATCAACAGATGCTGATGATGTTTGGTATGTGCTTTCATTCAGTGTTAAACATTTTATGTATTTCAGCATCCATTGTTGATATTCCATTCATTTAGTTCTACTAACAAACTAGATCATTCGAGCATGCATAAATATAAGAAAAAAGTTGTGTACAAAAATCTTGTACTGAGTTGGAATGGATTTGTTTTTGTCGTTGCAGGTATAAGAAAATGGAAGCCTGTGTTACTCCTAATCGTAAAGTCCACGGAGATCTTAAGCCTTTTCCACAGAGACTATATGCAGTTCCTCCTAAAGTTGCCAGTGGTTCTGTTCCCGGAGTTTCAGCTGAGACATACCAGGATGATAACGAAAAGTGGAAAAAACATGTAAATGCTTACAAGAAAATAAATAAGCTCCTGGACTCTGGAAGGTATCGCAATATCATGGATATGAATGCTGGTTTGGGTAGTTTTGCTGCTGCTATTCAATCTCCTAAGTTATGGGTCATGAATGTTGTGCCTACTATAGCTGAGAAACATACACTCGGTGTCATTTATCAGCGAGGACTCATAGGCATTTATCATGATTGGTATAGTTTTCTAACTTCTTCCTTCTATTTTATTCAGAGTGTCTTGATTTTATGTTTGAAAATGCTTAATCTTGTACTATTATTGTTTTGAGAAATGATACTTTGACATCAAAATTTGATTTCAAATACAGTGTTCTTTGCATTTATGTGTATCTATGAAATGTGTGTAAATTGTAGAACATTAAAAGTAAGAGAAAGAGAGATAGAGATAAACATATACGGTGTCACATACAGTGTCTGTATTTAAATAACACAACTCAATTCTTTTTCTCCTTGATGTATTGCATGAAAACGTAGACTCTATCTTGTATTGTTAGCACAACTTTCTGTGATCGGGTTGCCCTTTTCTCACATGTTTTTCCTTATTTATTTATTTATGCCTTTATGATCCAGGTGTGAAGCTTTTTCCACATATCCAAGGACGTACGACCTCATTCATAGCAATGGGCTCTTTAGTCTGTACAAGGAAAAGTGAGTATTCCTTTAATTATATGGTTATTCAATTCTTAATCAATAGTTTAGCCTTTGCATAGAATGCATTATAAGTTGTATAGGTGGTATGAAAATGATTTCAAGATAATGATTATCATCAGTGATAGAACCACTTAGTTTTACTTCTCTCTTTCCCCTTTGCCAGTTGTATTCATTCTTGTGTCTCAAAATCCTGTATCTAATCATCAAATGCAGATGTAACATAGATGACATTCTTCTGGAGATGGACCGGATTTTACGACCTGAAGGTGCTGTGATATTCCGTGATGAAGTTGATGTCTTAATCAAGGTAAAGAAAATTGTTGGAGGTATGAGATGGGATACTAAACTGGTTGACCATGAGGACGGTCCACTTGTTCCTGAAAAGATACTAATTGCTGTCAAGCAGTATTGGGTTGCTGATACAAATGCCACGTCAACACAATAA
Protein sequence

>MS.gene55210.t1

MAKPISSGSRTRSFVQIFIVVGLCCFFYILGAWQRTGFGKGDLLQLEVTKKGAGCDIVPNLSFDSHHGGEVSKIDEVDSKPKVFKPCKARYIDYTPCHDQRRAMTFSRQNMIYRERHCPREEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQIASVIPIENGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSGAFDMAHCSRCLIPWGSNDGIYMMEVDRVLRPGGYWVLSGPPIHWKANYKAWQRPKEDLEEEQRKIEEVAKLLCWEKKTEKNEIAVWQKTIDSETCRSRQEDSGAKFCESTDADDVWYKKMEACVTPNRKVHGDLKPFPQRLYAVPPKVASGSVPGVSAETYQDDNEKWKKHVNAYKKINKLLDSGRYRNIMDMNAGLGSFAAAIQSPKLWVMNVVPTIAEKHTLGVIYQRGLIGIYHDWCEAFSTYPRTYDLIHSNGLFSLYKEKCNIDDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHEDGPLVPEKILIAVKQYWVADTNATSTQ