AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55423

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55423.t1 MTR_6g021950 99.257 404 2 1 1 403 1 404 0.0 830
MS.gene55423.t1 MTR_4g104320 81.414 382 70 1 23 403 26 407 0.0 639
MS.gene55423.t1 MTR_3g075320 76.179 403 95 1 2 403 4 406 0.0 616
MS.gene55423.t1 MTR_3g086310 75.703 391 91 3 14 403 16 403 0.0 584
MS.gene55423.t1 MTR_1g047370 68.407 383 121 0 21 403 68 450 0.0 566
MS.gene55423.t1 MTR_7g059290 67.016 382 126 0 22 403 63 444 0.0 551
MS.gene55423.t1 MTR_3g086320 66.339 407 132 4 1 403 1 406 0.0 533
MS.gene55423.t1 MTR_1g062930 62.240 384 138 1 25 401 34 417 0.0 514
MS.gene55423.t1 MTR_1g111590 64.611 373 129 1 26 395 35 407 0.0 514
MS.gene55423.t1 MTR_7g102940 60.945 402 156 1 1 401 11 412 2.84e-178 505
MS.gene55423.t1 MTR_4g107870 57.754 374 153 3 33 403 63 434 1.40e-160 459
MS.gene55423.t1 MTR_3g075320 75.352 284 69 1 2 284 4 287 1.04e-155 441
MS.gene55423.t1 MTR_5g038510 56.522 368 159 1 37 403 82 449 1.23e-153 442
MS.gene55423.t1 MTR_8g468980 54.000 400 168 4 20 403 56 455 6.69e-152 437
MS.gene55423.t1 MTR_4g132460 60.571 350 134 3 55 403 39 385 4.23e-151 433
MS.gene55423.t1 MTR_5g038490 56.186 388 161 3 25 403 62 449 2.15e-150 433
MS.gene55423.t1 MTR_6g011420 53.266 398 173 3 19 403 56 453 3.57e-147 425
MS.gene55423.t1 MTR_2g023990 59.143 350 139 3 55 403 63 409 3.03e-146 421
MS.gene55423.t1 MTR_7g009390 58.475 354 146 1 51 403 98 451 3.22e-143 415
MS.gene55423.t1 MTR_8g078390 45.480 354 185 6 55 403 42 392 7.00e-99 300
MS.gene55423.t1 MTR_3g030900 45.198 354 186 6 55 403 23 373 1.62e-97 296
MS.gene55423.t1 MTR_8g078310 45.198 354 186 6 55 403 42 392 2.49e-97 296
MS.gene55423.t1 MTR_3g070740 65.854 205 57 2 200 403 134 326 9.13e-92 280
MS.gene55423.t1 MTR_8g078350 45.198 354 186 6 55 403 42 392 1.44e-91 281
MS.gene55423.t1 MTR_4g064420 44.540 348 172 7 55 399 42 371 7.80e-90 277
MS.gene55423.t1 MTR_8g078280 43.503 354 192 6 55 403 42 392 1.23e-89 276
MS.gene55423.t1 MTR_5g019060 42.373 354 196 6 55 403 41 391 1.82e-84 263
MS.gene55423.t1 MTR_5g035840 42.373 354 196 6 55 403 41 391 6.48e-84 261
MS.gene55423.t1 MTR_5g019160 42.090 354 197 6 55 403 41 391 1.28e-83 261
MS.gene55423.t1 MTR_5g019170 42.609 345 190 6 55 394 41 382 3.19e-81 256
MS.gene55423.t1 MTR_5g019090 42.090 354 197 6 55 403 41 391 4.71e-81 254
MS.gene55423.t1 MTR_2g023980 50.584 257 93 6 130 384 1 225 4.63e-73 231
MS.gene55423.t1 MTR_1g069950 43.657 268 147 3 130 395 1 266 1.04e-68 218
MS.gene55423.t1 MTR_6g077900 43.253 289 141 7 88 373 6 274 4.01e-59 194
MS.gene55423.t1 MTR_1g115550 38.699 292 153 7 68 358 9 275 1.09e-49 171
MS.gene55423.t1 MTR_1g067450 36.491 285 157 4 74 358 64 324 5.43e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55423.t1 AT5G63180 73.267 404 104 2 4 403 29 432 0.0 616
MS.gene55423.t1 AT3G27400 72.818 401 104 2 7 403 17 416 0.0 614
MS.gene55423.t1 AT3G27400 72.818 401 104 2 7 403 13 412 0.0 613
MS.gene55423.t1 AT1G67750 74.293 389 97 2 16 403 22 408 0.0 603
MS.gene55423.t1 AT4G24780 73.552 397 104 1 8 403 12 408 0.0 599
MS.gene55423.t1 AT4G24780 73.552 397 104 1 8 403 12 408 0.0 599
MS.gene55423.t1 AT4G13710 67.885 383 119 1 25 403 88 470 0.0 588
MS.gene55423.t1 AT4G13710 67.885 383 119 1 25 403 69 451 0.0 586
MS.gene55423.t1 AT3G07010 68.564 404 119 1 8 403 13 416 0.0 573
MS.gene55423.t1 AT3G07010 71.353 377 108 0 27 403 7 383 0.0 568
MS.gene55423.t1 AT1G04680 67.876 386 120 1 22 403 44 429 0.0 556
MS.gene55423.t1 AT3G24670 68.848 382 119 0 22 403 59 440 0.0 552
MS.gene55423.t1 AT3G24230 65.285 386 129 2 22 403 67 451 0.0 545
MS.gene55423.t1 AT5G48900 64.904 416 131 2 3 403 2 417 0.0 536
MS.gene55423.t1 AT4G13210 68.146 383 121 1 22 403 56 438 0.0 527
MS.gene55423.t1 AT4G13210 68.146 383 121 1 22 403 19 401 0.0 525
MS.gene55423.t1 AT3G53190 62.222 405 136 3 7 395 11 414 3.74e-180 510
MS.gene55423.t1 AT5G04310 62.402 383 131 1 26 395 53 435 3.97e-171 487
MS.gene55423.t1 AT5G04310 62.402 383 131 1 26 395 53 435 5.31e-170 486
MS.gene55423.t1 AT5G04310 62.402 383 131 1 26 395 53 435 5.31e-170 486
MS.gene55423.t1 AT3G54920 59.740 385 131 4 26 395 37 412 2.56e-167 478
MS.gene55423.t1 AT5G55720 56.404 406 151 5 5 403 6 392 7.48e-167 473
MS.gene55423.t1 AT1G14420 54.474 380 165 2 32 403 80 459 2.28e-151 436
MS.gene55423.t1 AT1G11920 53.250 400 168 4 5 403 3 384 3.41e-148 425
MS.gene55423.t1 AT4G22090 57.714 350 144 3 55 403 47 393 9.97e-146 419
MS.gene55423.t1 AT3G01270 56.338 355 153 2 51 403 121 475 1.89e-145 422
MS.gene55423.t1 AT5G15110 55.493 355 156 2 51 403 118 472 1.91e-145 422
MS.gene55423.t1 AT4G22080 57.429 350 145 3 55 403 47 393 8.82e-144 414
MS.gene55423.t1 AT1G30350 52.000 400 160 5 4 403 1 368 2.43e-140 405
MS.gene55423.t1 AT2G02720 53.803 355 158 1 55 403 101 455 3.08e-140 408
MS.gene55423.t1 AT5G09280 47.984 248 127 2 88 334 6 252 5.79e-78 243
MS.gene55423.t1 AT3G55140 39.860 286 146 7 74 358 16 276 1.56e-50 173
MS.gene55423.t1 AT3G09540 36.111 288 158 5 72 358 61 323 1.87e-43 155
MS.gene55423.t1 AT3G55140 39.044 251 132 6 109 358 22 252 4.20e-42 150
MS.gene55423.t1 AT3G09540 35.764 288 155 6 72 358 61 319 1.67e-41 150
MS.gene55423.t1 AT3G09540 35.510 245 134 4 72 316 61 281 6.71e-36 133

Find 82 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATTCACAACATATT+TGG 0.148343 6.2:-15406815 MS.gene55423:CDS
CACCAGAACATAGTGGATTT+TGG 0.165374 6.2:-15406866 MS.gene55423:CDS
ACTGAAGAGGAAACAAAATT+TGG 0.175850 6.2:+15408274 None:intergenic
TGTCGGTTGTTCTCCCAATT+TGG 0.183698 6.2:+15407242 None:intergenic
ATGCATACCTTGGCATTCTT+TGG 0.240400 6.2:+15406598 None:intergenic
ATCTACGTTGTCACTGATTC+AGG 0.278439 6.2:-15407158 MS.gene55423:CDS
TCAATTAAAACAAGAGCTTT+TGG 0.287323 6.2:-15407039 MS.gene55423:CDS
TCATGACAAAGTTATGCTTT+TGG 0.300199 6.2:-15406697 MS.gene55423:CDS
GCTGATTGTGCAATTGGATT+TGG 0.305034 6.2:-15407212 MS.gene55423:CDS
GTCGGTTGTTCTCCCAATTT+GGG 0.308400 6.2:+15407243 None:intergenic
CAATTCAAGATGAACCATTA+TGG 0.310393 6.2:-15407088 MS.gene55423:CDS
TACCTTAATGTTCCTGGCTT+AGG 0.318773 6.2:+15407116 None:intergenic
GTTGGAGATGTGACCCAAAT+TGG 0.323275 6.2:-15407256 MS.gene55423:CDS
GGTTCCATCACTACTACTTC+TGG 0.332285 6.2:-15405475 MS.gene55423:CDS
GCACCATACCTTAATGTTCC+TGG 0.337883 6.2:+15407110 None:intergenic
TTCCCTTGGCTGTTGATTGT+AGG 0.338196 6.2:+15405700 None:intergenic
ACCTTAATGTTCCTGGCTTA+GGG 0.354026 6.2:+15407117 None:intergenic
ACATCTTGTACAACAAGTTC+AGG 0.356255 6.2:+15408244 None:intergenic
AGACTAGCTGATTGTGCAAT+TGG 0.358822 6.2:-15407218 MS.gene55423:CDS
CATCTCCAACAATCATCAAT+TGG 0.359076 6.2:+15407269 None:intergenic
ACCCTAAGCCAGGAACATTA+AGG 0.369613 6.2:-15407118 MS.gene55423:CDS
GTGAATATAATAGCTGGAAT+TGG 0.370547 6.2:-15405612 MS.gene55423:CDS
CACAATCAGCTAGTCTTTGT+CGG 0.381751 6.2:+15407225 None:intergenic
GCAAGACCAGCCTCTCTTGT+TGG 0.384223 6.2:-15405496 MS.gene55423:CDS
CTGAAGAGGAAACAAAATTT+GGG 0.391112 6.2:+15408275 None:intergenic
CTCTAGGTCGAGGAGAAACT+TGG 0.392612 6.2:-15407318 MS.gene55423:CDS
GAGGGTGATTTGTTCTTGAA+TGG 0.394829 6.2:-15405583 MS.gene55423:CDS
GGCTATTTATCATGTGGAAC+TGG 0.405816 6.2:-15407296 MS.gene55423:CDS
GTTCATGATTGTGTTCCAAC+GGG 0.420422 6.2:-15406909 MS.gene55423:CDS
GGAGCATTCTTTAGACAAAC+TGG 0.421504 6.2:-15405562 MS.gene55423:CDS
TCCCTTGGCTGTTGATTGTA+GGG 0.426471 6.2:+15405701 None:intergenic
AATTCATACAAGACAATTGA+TGG 0.427271 6.2:-15407014 MS.gene55423:CDS
TCCTTGCTAAATCTATTGTC+TGG 0.439093 6.2:+15405664 None:intergenic
GATCATATTCAAAAGAGATA+TGG 0.439191 6.2:-15407066 MS.gene55423:CDS
CATTGGGAAATGTATGCAAT+TGG 0.444123 6.2:-15405736 MS.gene55423:CDS
GAACAATGATTACACACATT+GGG 0.453403 6.2:-15405752 MS.gene55423:CDS
GCAACCCAATTGATGATTGT+TGG 0.461820 6.2:-15407274 MS.gene55423:CDS
GTTAATAATGTTATAATACA+TGG 0.461906 6.2:-15406939 MS.gene55423:CDS
GGATTTGGAAAAGATGCAAT+TGG 0.464882 6.2:-15407197 MS.gene55423:CDS
CAGAAAGTGAATATAATAGC+TGG 0.465031 6.2:-15405618 MS.gene55423:CDS
GTCCAAAATCCACTATGTTC+TGG 0.466293 6.2:+15406864 None:intergenic
GTGCAAGAAATCTGTTCCCT+TGG 0.476596 6.2:+15405686 None:intergenic
ATCTCCAACAATCATCAATT+GGG 0.489891 6.2:+15407270 None:intergenic
TTGGAGATGTGACCCAAATT+GGG 0.502512 6.2:-15407255 MS.gene55423:CDS
CTAATATTTGTGTTCCCCGT+TGG 0.503319 6.2:+15406894 None:intergenic
TGGTGTGCTTACTTGCAAGA+AGG 0.524331 6.2:-15405455 MS.gene55423:CDS
AGCTGGAATTGGAGATCAGA+GGG 0.527960 6.2:-15405601 MS.gene55423:CDS
TCTTTGTCTAATTGTCGTGA+TGG 0.533384 6.2:-15406780 MS.gene55423:CDS
TGGGAAATGTATGCAATTGG+AGG 0.535593 6.2:-15405733 MS.gene55423:CDS
ATGGAACCAACAAGAGAGGC+TGG 0.542918 6.2:+15405490 None:intergenic
TGTTCATGATTGTGTTCCAA+CGG 0.543560 6.2:-15406910 MS.gene55423:CDS
TACACAAGACAAGGACATGC+AGG 0.544315 6.2:-15406658 MS.gene55423:CDS
GGTCTTATTGATGTTATACA+TGG 0.549548 6.2:-15406759 MS.gene55423:CDS
TGAACAATGATTACACACAT+TGG 0.549687 6.2:-15405753 MS.gene55423:CDS
GTAGGAGCATCAATGTCTCT+AGG 0.558876 6.2:-15407334 MS.gene55423:intron
AGAGATTCACCAGAACATAG+TGG 0.561715 6.2:-15406873 MS.gene55423:CDS
TACAAGACAATTGATGGAAG+AGG 0.566366 6.2:-15407008 MS.gene55423:CDS
AATTCCATCACCATCTGAAA+CGG 0.566606 6.2:+15406842 None:intergenic
GGTGTGCTTACTTGCAAGAA+GGG 0.567542 6.2:-15405454 MS.gene55423:CDS
AACCCTACAATCAACAGCCA+AGG 0.572050 6.2:-15405703 MS.gene55423:CDS
AACTTGGGCTATTTATCATG+TGG 0.574554 6.2:-15407302 MS.gene55423:CDS
TTCAGGGTCTTGAACTGAAG+AGG 0.574726 6.2:+15408261 None:intergenic
TGGACCGTTTCAGATGGTGA+TGG 0.575388 6.2:-15406846 MS.gene55423:CDS
AAGCCAGGAACATTAAGGTA+TGG 0.578760 6.2:-15407113 MS.gene55423:CDS
GCTAGTGTTCACATTGCAAA+TGG 0.586396 6.2:-15406984 MS.gene55423:CDS
GCATCAATGTCTCTAGGTCG+AGG 0.587832 6.2:-15407328 MS.gene55423:CDS
ACCAGACAATAGATTTAGCA+AGG 0.593699 6.2:-15405665 MS.gene55423:CDS
CACACCAGAAGTAGTAGTGA+TGG 0.594623 6.2:+15405471 None:intergenic
CATCTTGTACAACAAGTTCA+GGG 0.601679 6.2:+15408245 None:intergenic
GATGCAGTAAACCCTAAGCC+AGG 0.603794 6.2:-15407128 MS.gene55423:CDS
GGGAAATGTATGCAATTGGA+GGG 0.622895 6.2:-15405732 MS.gene55423:CDS
TTTGGAAAAGATGCAATTGG+TGG 0.625951 6.2:-15407194 MS.gene55423:CDS
ACCCTACAATCAACAGCCAA+GGG 0.631197 6.2:-15405702 MS.gene55423:CDS
TCTAGGTCGAGGAGAAACTT+GGG 0.638334 6.2:-15407317 MS.gene55423:CDS
AGTGTTCACATTGCAAATGG+TGG 0.646316 6.2:-15406981 MS.gene55423:CDS
TAGCTGGAATTGGAGATCAG+AGG 0.658304 6.2:-15405602 MS.gene55423:CDS
AGTGATGGAACCAACAAGAG+AGG 0.669990 6.2:+15405486 None:intergenic
TTCATGATTGTGTTCCAACG+GGG 0.684589 6.2:-15406908 MS.gene55423:CDS
TGATTCTTATACACAAGACA+AGG 0.687935 6.2:-15406667 MS.gene55423:CDS
TTGTTGTACAAGATGTACAA+AGG 0.691137 6.2:-15408237 MS.gene55423:intron
GGCTTGTCCAAAGAATGCCA+AGG 0.703891 6.2:-15406605 MS.gene55423:intron
TAGACATGGCTACTTTCATG+TGG 0.715841 6.2:-15405776 MS.gene55423:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAAAA+AGG - chr6.2:15406154-15406173 MS.gene55423:intron 0.0%
!! CAAAATATATATAATTAACT+TGG + chr6.2:15406331-15406350 None:intergenic 10.0%
!! TGCTAAAAAAAAAATATTAA+AGG + chr6.2:15407218-15407237 None:intergenic 10.0%
!!! GATTTTGTATTTTTTTATTT+TGG + chr6.2:15405917-15405936 None:intergenic 10.0%
!! AAAGTTTGATTAATATGTAA+TGG - chr6.2:15405656-15405675 MS.gene55423:CDS 15.0%
!! AACCCAAATTAAAAAAAAAT+TGG - chr6.2:15407309-15407328 MS.gene55423:CDS 15.0%
!! ACCCAAATTAAAAAAAAATT+GGG - chr6.2:15407310-15407329 MS.gene55423:CDS 15.0%
!! CAATCACAAATAAAATTATT+TGG + chr6.2:15407443-15407462 None:intergenic 15.0%
!! CTGAAAACAATAATTATTTA+TGG + chr6.2:15407961-15407980 None:intergenic 15.0%
!! GTTAATAATGTTATAATACA+TGG - chr6.2:15406821-15406840 MS.gene55423:CDS 15.0%
!! TTATAAAGAAAAAAAGTCTT+TGG - chr6.2:15406099-15406118 MS.gene55423:intron 15.0%
!!! AGACTTTTTTTCTTTATAAA+TGG + chr6.2:15406098-15406117 None:intergenic 15.0%
!!! ATATTTTTTTTTTAGCATAG+TGG - chr6.2:15407221-15407240 MS.gene55423:CDS 15.0%
!!! GACATTTTTTTTATGTTTAT+GGG + chr6.2:15407610-15407629 None:intergenic 15.0%
!!! GACTTTTTTTCTTTATAAAT+GGG + chr6.2:15406097-15406116 None:intergenic 15.0%
!!! TGACATTTTTTTTATGTTTA+TGG + chr6.2:15407611-15407630 None:intergenic 15.0%
!!! TTTGTTTTTAAAAGAGAAAT+TGG - chr6.2:15407350-15407369 MS.gene55423:intron 15.0%
!! AAATTCAAAAAGTAGGATAA+AGG - chr6.2:15407808-15407827 MS.gene55423:intron 20.0%
!! ATGATACTACTAAGAAATTA+GGG + chr6.2:15407707-15407726 None:intergenic 20.0%
!! CCTTAAAAAATTCAAAAAGT+AGG - chr6.2:15407801-15407820 MS.gene55423:intron 20.0%
!! TGTTTAATTCACAACATATT+TGG - chr6.2:15406945-15406964 MS.gene55423:CDS 20.0%
!!! ACTATTGCTTTTAATCATTT+TGG - chr6.2:15407127-15407146 MS.gene55423:CDS 20.0%
!!! ATTTTAATTTCTCTTCTTGT+AGG - chr6.2:15406408-15406427 MS.gene55423:intron 20.0%
!!! CCTACTTTTTGAATTTTTTA+AGG + chr6.2:15407804-15407823 None:intergenic 20.0%
!!! GCCCAATTTTTTTTTAATTT+GGG + chr6.2:15407314-15407333 None:intergenic 20.0%
!!! TGCCCAATTTTTTTTTAATT+TGG + chr6.2:15407315-15407334 None:intergenic 20.0%
!!! TTGAATTTTTTAAGGTAGTT+AGG + chr6.2:15407796-15407815 None:intergenic 20.0%
! AAAGAAAATCTCTCTATAGT+TGG + chr6.2:15407548-15407567 None:intergenic 25.0%
! AAGAAAATCTCTCTATAGTT+GGG + chr6.2:15407547-15407566 None:intergenic 25.0%
! AATTCATACAAGACAATTGA+TGG - chr6.2:15406746-15406765 MS.gene55423:CDS 25.0%
! AATTTCTTAGTAGTATCATG+AGG - chr6.2:15407708-15407727 MS.gene55423:intron 25.0%
! ACAATATGGTGAATTATCAT+CGG + chr6.2:15406066-15406085 None:intergenic 25.0%
! ATTAATCTCAAAGCTCATAT+AGG - chr6.2:15405841-15405860 MS.gene55423:intron 25.0%
! ATTACTCTATGATATCACTT+TGG + chr6.2:15405774-15405793 None:intergenic 25.0%
! CACATTAGATACAATGTATT+TGG + chr6.2:15405682-15405701 None:intergenic 25.0%
! CATGATACTACTAAGAAATT+AGG + chr6.2:15407708-15407727 None:intergenic 25.0%
! GATCATATTCAAAAGAGATA+TGG - chr6.2:15406694-15406713 MS.gene55423:CDS 25.0%
!! AATGGGTTTATATGACAATA+TGG + chr6.2:15406080-15406099 None:intergenic 25.0%
!! ATTTAATAGAAGTGCATTGT+TGG - chr6.2:15406016-15406035 MS.gene55423:intron 25.0%
!! CACATTTCTTTGAATTTGTT+AGG + chr6.2:15407762-15407781 None:intergenic 25.0%
!! CTTTTGAATATGATCCATAA+TGG + chr6.2:15406689-15406708 None:intergenic 25.0%
!! GTTAGCAAAAATGTGTTTTT+GGG - chr6.2:15407263-15407282 MS.gene55423:CDS 25.0%
!! TCAATTAAAACAAGAGCTTT+TGG - chr6.2:15406721-15406740 MS.gene55423:CDS 25.0%
!! TGTTAGCAAAAATGTGTTTT+TGG - chr6.2:15407262-15407281 MS.gene55423:CDS 25.0%
!!! CTTTTAATCATTTTGGTGAA+GGG - chr6.2:15407134-15407153 MS.gene55423:CDS 25.0%
!!! TTAGGTCTTTACTTTGTTTT+TGG + chr6.2:15407744-15407763 None:intergenic 25.0%
ACTGAAGAGGAAACAAAATT+TGG + chr6.2:15405489-15405508 None:intergenic 30.0%
AGCTGAGAATAAACTAGAAT+CGG - chr6.2:15405945-15405964 MS.gene55423:intron 30.0%
ATCTCCAACAATCATCAATT+GGG + chr6.2:15406493-15406512 None:intergenic 30.0%
CAATTCAAGATGAACCATTA+TGG - chr6.2:15406672-15406691 MS.gene55423:CDS 30.0%
CAGAAAGTGAATATAATAGC+TGG - chr6.2:15408142-15408161 MS.gene55423:intron 30.0%
CTGAAGAGGAAACAAAATTT+GGG + chr6.2:15405488-15405507 None:intergenic 30.0%
GAACAATGATTACACACATT+GGG - chr6.2:15408008-15408027 MS.gene55423:intron 30.0%
GGGAGTAAAAATATTTGCTT+AGG - chr6.2:15407283-15407302 MS.gene55423:CDS 30.0%
GTGAATATAATAGCTGGAAT+TGG - chr6.2:15408148-15408167 MS.gene55423:intron 30.0%
GTTTAATTACTGTACATCGA+CGG - chr6.2:15406244-15406263 MS.gene55423:intron 30.0%
TGAACAATGATTACACACAT+TGG - chr6.2:15408007-15408026 MS.gene55423:intron 30.0%
TGATTCTTATACACAAGACA+AGG - chr6.2:15407093-15407112 MS.gene55423:CDS 30.0%
TGTCATATATATGCATACCT+TGG + chr6.2:15407175-15407194 None:intergenic 30.0%
TGTGTAAGATCAACTTCTTT+AGG - chr6.2:15407467-15407486 MS.gene55423:intron 30.0%
TTGTTGTACAAGATGTACAA+AGG - chr6.2:15405523-15405542 MS.gene55423:CDS 30.0%
! ATTGTTTTCAGATGTAGACA+TGG - chr6.2:15407970-15407989 MS.gene55423:intron 30.0%
! CATGACAAAGTTATGCTTTT+GGG - chr6.2:15407064-15407083 MS.gene55423:CDS 30.0%
! GCTATTATGAGAGATTTTGA+AGG + chr6.2:15407664-15407683 None:intergenic 30.0%
! TCATGACAAAGTTATGCTTT+TGG - chr6.2:15407063-15407082 MS.gene55423:CDS 30.0%
!! GCTTTTAATCATTTTGGTGA+AGG - chr6.2:15407133-15407152 MS.gene55423:CDS 30.0%
!! GGTCTTATTGATGTTATACA+TGG - chr6.2:15407001-15407020 MS.gene55423:CDS 30.0%
AACTTGGGCTATTTATCATG+TGG - chr6.2:15406458-15406477 MS.gene55423:intron 35.0%
AATTCCATCACCATCTGAAA+CGG + chr6.2:15406921-15406940 None:intergenic 35.0%
ACATCTTGTACAACAAGTTC+AGG + chr6.2:15405519-15405538 None:intergenic 35.0%
ACCAGACAATAGATTTAGCA+AGG - chr6.2:15408095-15408114 MS.gene55423:intron 35.0%
CATCTCCAACAATCATCAAT+TGG + chr6.2:15406494-15406513 None:intergenic 35.0%
CATCTTGTACAACAAGTTCA+GGG + chr6.2:15405518-15405537 None:intergenic 35.0%
CATTGGGAAATGTATGCAAT+TGG - chr6.2:15408024-15408043 MS.gene55423:intron 35.0%
CTCTCTATAGTTGGGAATAT+GGG + chr6.2:15407539-15407558 None:intergenic 35.0%
GGATTTGGAAAAGATGCAAT+TGG - chr6.2:15406563-15406582 MS.gene55423:intron 35.0%
TACAAGACAATTGATGGAAG+AGG - chr6.2:15406752-15406771 MS.gene55423:CDS 35.0%
TCCTTGCTAAATCTATTGTC+TGG + chr6.2:15408099-15408118 None:intergenic 35.0%
TCTCTATAGTTGGGAATATG+GGG + chr6.2:15407538-15407557 None:intergenic 35.0%
TCTCTCTATAGTTGGGAATA+TGG + chr6.2:15407540-15407559 None:intergenic 35.0%
TCTTTGTCTAATTGTCGTGA+TGG - chr6.2:15406980-15406999 MS.gene55423:CDS 35.0%
TGTTCATGATTGTGTTCCAA+CGG - chr6.2:15406850-15406869 MS.gene55423:CDS 35.0%
TTTGGAAAAGATGCAATTGG+TGG - chr6.2:15406566-15406585 MS.gene55423:intron 35.0%
! GATGCAATTGGTGGTAAAAA+TGG - chr6.2:15406575-15406594 MS.gene55423:intron 35.0%
! GGAGAGAGAATTTTCTATCA+CGG - chr6.2:15407488-15407507 MS.gene55423:intron 35.0%
AAGCCAGGAACATTAAGGTA+TGG - chr6.2:15406647-15406666 MS.gene55423:CDS 40.0%
ACCTTAATGTTCCTGGCTTA+GGG + chr6.2:15406646-15406665 None:intergenic 40.0%
AGAGATTCACCAGAACATAG+TGG - chr6.2:15406887-15406906 MS.gene55423:CDS 40.0%
AGTGTTCACATTGCAAATGG+TGG - chr6.2:15406779-15406798 MS.gene55423:CDS 40.0%
ATGCATACCTTGGCATTCTT+TGG + chr6.2:15407165-15407184 None:intergenic 40.0%
CTAATATTTGTGTTCCCCGT+TGG + chr6.2:15406869-15406888 None:intergenic 40.0%
GCTAGTGTTCACATTGCAAA+TGG - chr6.2:15406776-15406795 MS.gene55423:CDS 40.0%
GCTGATTGTGCAATTGGATT+TGG - chr6.2:15406548-15406567 MS.gene55423:intron 40.0%
GGCTATTTATCATGTGGAAC+TGG - chr6.2:15406464-15406483 MS.gene55423:intron 40.0%
GGGAAATGTATGCAATTGGA+GGG - chr6.2:15408028-15408047 MS.gene55423:intron 40.0%
GGGGTTATCTACATAGAGAT+GGG + chr6.2:15407576-15407595 None:intergenic 40.0%
GGTGAATTATCATCGGATGT+CGG + chr6.2:15406059-15406078 None:intergenic 40.0%
GTCCAAAATCCACTATGTTC+TGG + chr6.2:15406899-15406918 None:intergenic 40.0%
GTTCATGATTGTGTTCCAAC+GGG - chr6.2:15406851-15406870 MS.gene55423:CDS 40.0%
TACCTTAATGTTCCTGGCTT+AGG + chr6.2:15406647-15406666 None:intergenic 40.0%
TGGGAAATGTATGCAATTGG+AGG - chr6.2:15408027-15408046 MS.gene55423:intron 40.0%
TTCATGATTGTGTTCCAACG+GGG - chr6.2:15406852-15406871 MS.gene55423:CDS 40.0%
TTGGAGATGTGACCCAAATT+GGG - chr6.2:15406505-15406524 MS.gene55423:intron 40.0%
! AGACTAGCTGATTGTGCAAT+TGG - chr6.2:15406542-15406561 MS.gene55423:intron 40.0%
! GCAACCCAATTGATGATTGT+TGG - chr6.2:15406486-15406505 MS.gene55423:intron 40.0%
! GGAGCATTCTTTAGACAAAC+TGG - chr6.2:15408198-15408217 MS.gene55423:intron 40.0%
! TAGACATGGCTACTTTCATG+TGG - chr6.2:15407984-15408003 MS.gene55423:intron 40.0%
!! ATCTACGTTGTCACTGATTC+AGG - chr6.2:15406602-15406621 MS.gene55423:intron 40.0%
!! CACAATCAGCTAGTCTTTGT+CGG + chr6.2:15406538-15406557 None:intergenic 40.0%
!! GAGGGTGATTTGTTCTTGAA+TGG - chr6.2:15408177-15408196 MS.gene55423:intron 40.0%
!!! CACCAGAACATAGTGGATTT+TGG - chr6.2:15406894-15406913 MS.gene55423:CDS 40.0%
AACCCTACAATCAACAGCCA+AGG - chr6.2:15408057-15408076 MS.gene55423:intron 45.0%
ACCCTAAGCCAGGAACATTA+AGG - chr6.2:15406642-15406661 MS.gene55423:CDS 45.0%
ACCCTACAATCAACAGCCAA+GGG - chr6.2:15408058-15408077 MS.gene55423:intron 45.0%
AGCTGGAATTGGAGATCAGA+GGG - chr6.2:15408159-15408178 MS.gene55423:intron 45.0%
ATGTAGATAACCCCGCAAGT+GGG - chr6.2:15407582-15407601 MS.gene55423:intron 45.0%
CACACCAGAAGTAGTAGTGA+TGG + chr6.2:15408292-15408311 None:intergenic 45.0%
CATCGGATGTCGGTGTAAAA+TGG + chr6.2:15406049-15406068 None:intergenic 45.0%
CGGGGTTATCTACATAGAGA+TGG + chr6.2:15407577-15407596 None:intergenic 45.0%
GCACCATACCTTAATGTTCC+TGG + chr6.2:15406653-15406672 None:intergenic 45.0%
GGTGTGCTTACTTGCAAGAA+GGG - chr6.2:15408306-15408325 MS.gene55423:CDS 45.0%
GGTTCCATCACTACTACTTC+TGG - chr6.2:15408285-15408304 MS.gene55423:CDS 45.0%
GTCGGTTGTTCTCCCAATTT+GGG + chr6.2:15406520-15406539 None:intergenic 45.0%
GTGCAAGAAATCTGTTCCCT+TGG + chr6.2:15408077-15408096 None:intergenic 45.0%
GTTGGAGATGTGACCCAAAT+TGG - chr6.2:15406504-15406523 MS.gene55423:intron 45.0%
TACACAAGACAAGGACATGC+AGG - chr6.2:15407102-15407121 MS.gene55423:CDS 45.0%
TAGCTGGAATTGGAGATCAG+AGG - chr6.2:15408158-15408177 MS.gene55423:intron 45.0%
TATGTAGATAACCCCGCAAG+TGG - chr6.2:15407581-15407600 MS.gene55423:intron 45.0%
TCTAGGTCGAGGAGAAACTT+GGG - chr6.2:15406443-15406462 MS.gene55423:intron 45.0%
TGGTGTGCTTACTTGCAAGA+AGG - chr6.2:15408305-15408324 MS.gene55423:CDS 45.0%
TGTTTATGGGTTCCCACTTG+CGG + chr6.2:15407597-15407616 None:intergenic 45.0%
TTCAGGGTCTTGAACTGAAG+AGG + chr6.2:15405502-15405521 None:intergenic 45.0%
! AGTGATGGAACCAACAAGAG+AGG + chr6.2:15408277-15408296 None:intergenic 45.0%
! GGATTTTGGACCGTTTCAGA+TGG - chr6.2:15406908-15406927 MS.gene55423:CDS 45.0%
! TCCCTTGGCTGTTGATTGTA+GGG + chr6.2:15408062-15408081 None:intergenic 45.0%
! TGTCGGTTGTTCTCCCAATT+TGG + chr6.2:15406521-15406540 None:intergenic 45.0%
! TTCCCTTGGCTGTTGATTGT+AGG + chr6.2:15408063-15408082 None:intergenic 45.0%
!! GTAGGAGCATCAATGTCTCT+AGG - chr6.2:15406426-15406445 MS.gene55423:intron 45.0%
!!! AATTTTAATATAATAATTGT+CGG - chr6.2:15406362-15406381 MS.gene55423:intron 5.0%
ATGGAACCAACAAGAGAGGC+TGG + chr6.2:15408273-15408292 None:intergenic 50.0%
CTCTAGGTCGAGGAGAAACT+TGG - chr6.2:15406442-15406461 MS.gene55423:intron 50.0%
GATGCAGTAAACCCTAAGCC+AGG - chr6.2:15406632-15406651 MS.gene55423:CDS 50.0%
GCATCAATGTCTCTAGGTCG+AGG - chr6.2:15406432-15406451 MS.gene55423:intron 50.0%
GGCTTGTCCAAAGAATGCCA+AGG - chr6.2:15407155-15407174 MS.gene55423:CDS 50.0%
GTTTATGGGTTCCCACTTGC+GGG + chr6.2:15407596-15407615 None:intergenic 50.0%
TGGACCGTTTCAGATGGTGA+TGG - chr6.2:15406914-15406933 MS.gene55423:CDS 50.0%
TTTATGGGTTCCCACTTGCG+GGG + chr6.2:15407595-15407614 None:intergenic 50.0%
GCAAGACCAGCCTCTCTTGT+TGG - chr6.2:15408264-15408283 MS.gene55423:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 15405441 15408341 15405441 ID=MS.gene55423
chr6.2 mRNA 15405441 15408341 15405441 ID=MS.gene55423.t1;Parent=MS.gene55423
chr6.2 exon 15408238 15408341 15408238 ID=MS.gene55423.t1.exon1;Parent=MS.gene55423.t1
chr6.2 CDS 15408238 15408341 15408238 ID=cds.MS.gene55423.t1;Parent=MS.gene55423.t1
chr6.2 exon 15406606 15407352 15406606 ID=MS.gene55423.t1.exon2;Parent=MS.gene55423.t1
chr6.2 CDS 15406606 15407352 15406606 ID=cds.MS.gene55423.t1;Parent=MS.gene55423.t1
chr6.2 exon 15405441 15405801 15405441 ID=MS.gene55423.t1.exon3;Parent=MS.gene55423.t1
chr6.2 CDS 15405441 15405801 15405441 ID=cds.MS.gene55423.t1;Parent=MS.gene55423.t1
Gene Sequence

>MS.gene55423

ATGACTTCTCTTTCATACTTTCTCATTCTTTTTGCTCTTCTAATCCCAAATTTTGTTTCCTCTTCAGTTCAAGACCCTGAACTTGTTGTACAAGATGTACAAAGGTAATAACATTTATTTATTTCTTAATTATTTTGTGTTATGTGTACTCACTCTAGCTACATTATTCATTTCATGAGTATTTCAATCAACAATTTCATTAAGTTTATTGCATAAAAGTTTGATTAATATGTAATGGCCAAATACATTGTATCTAATGTGAGCATAAAACATGTTTACACATGCATCTAGTGACATATGATAAAATAAATATTTTGTGCATCTAACATACCAAAGTGATATCATAGAGTAATTTGTTTGAGTGCATGTGTAATTTTTATTACACTATCAATGCATAGCAATTAATCTCAAAGCTCATATAGGTTTTATTTCTACATTTGATTATAAAATCAAAATATCTCAATATCTCTTGACCAAAATAAAAAAATACAAAATCTCAATATCAGCTGAGAATAAACTAGAATCGGTTTATGAAAACTGTTGTGAGTTATATTTGTAAACTCTTCTAAATACGAATTTAATAGAAGTGCATTGTTGGTGTAAGACCATTTTACACCGACATCCGATGATAATTCACCATATTGTCATATAAACCCATTTATAAAGAAAAAAAGTCTTTGGCTTGTTCAAAAAAAAAAAAGTCATGTTCTTGTTTTTTTTTTTTTTTTTAAAAAGGTCAAGTTCTTGTTTTTATCTTCAAACATTTATATGTAAATACTTATGTCATATAATAATTTCAAAGAGTTTAATTACTGTACATCGACGGTTGTAAAGTTACTTTACATATCAATATGTTGTTACATTAATTAATGATGTCAACTTCAACGCCAAGTTAATTATATATATTTTGAAAACAAACTAAATTTTAATATAATAATTGTCGGATTTGAATTAATTAGTTAAATTAATTTTAATTTCTCTTCTTGTAGGAGCATCAATGTCTCTAGGTCGAGGAGAAACTTGGGCTATTTATCATGTGGAACTGGCAACCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAGAACAACCGACAAAGACTAGCTGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTACGTTGTCACTGATTCAGGTGATGATGATGCAGTAAACCCTAAGCCAGGAACATTAAGGTATGGTGCAATTCAAGATGAACCATTATGGATCATATTCAAAAGAGATATGGTAATTCAATTAAAACAAGAGCTTTTGGTAAATTCATACAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCAAATGGTGGATGTATTACAATACATTATGTTAATAATGTTATAATACATGGTATTCATGTTCATGATTGTGTTCCAACGGGGAACACAAATATTAGAGATTCACCAGAACATAGTGGATTTTGGACCGTTTCAGATGGTGATGGAATTTCAGTGTTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGTCTTATTGATGTTATACATGGATCTAATGCTATTACTATTTCAAATAACTATATGACTCATCATGACAAAGTTATGCTTTTGGGACATAGTGATTCTTATACACAAGACAAGGACATGCAGGTCACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTATGCATATATATGACACTAAAATTTCACTTTTTTTTCCTTTAATATTTTTTTTTTAGCATAGTGGTAAAAAAAAGTCATGCATTGTTAGCAAAAATGTGTTTTTGGGAGTAAAAATATTTGCTTAGGACAAACCCAAATTAAAAAAAAATTGGGCATGCTCACACATATATTTTGTTTTTAAAAGAGAAATTGGTTTAATGATGTTGAATAACGTGACTAATTTATTTATCTATTAATTTCTTTTATTATTATGTGTGCGTCCAAATAATTTTATTTGTGATTGCGTTTGTGTAAGATCAACTTCTTTAGGAGAGAGAATTTTCTATCACGGCGTCTCAAAATGTCGATCGATATGCCCCATATTCCCAACTATAGAGAGATTTTCTTTTATGTCCCATCTCTATGTAGATAACCCCGCAAGTGGGAACCCATAAACATAAAAAAAATGTCAACTTTTTTATTGAAAATTGTCATTTTCTAACCTTCAAAATCTCTCATAATAGCAAATGTCATATTAATGTAAACCCTAATTTCTTAGTAGTATCATGAGGCTCGATTGAACCAAAAACAAAGTAAAGACCTAACAAATTCAAAGAAATGTGCATATATGATACCTAACTACCTTAAAAAATTCAAAAAGTAGGATAAAGGTTAGTTGTGACTTTTTGATTGAGTTATCTATTGCTTATTACTTGTTCAAACACTCACATGAATATATATATATATATATATATATATATATATATATATATATATATAAGCTTGAAAATATATATAACCATAAATAATTATTGTTTTCAGATGTAGACATGGCTACTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGAGGGAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTTCTTGCACCAGACAATAGATTTAGCAAGGAAGTAACAAAGCATGAAGATGCATCAGAAAGTGAATATAATAGCTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAATCTTCTTCAATCTATGCTAGAGCTTCAAGTCTTAGTGCAAGACCAGCCTCTCTTGTTGGTTCCATCACTACTACTTCTGGTGTGCTTACTTGCAAGAAGGGCAACCGTTGCTAA
Protein sequence

>MS.gene55423.t1

MTSLSYFLILFALLIPNFVSSSVQDPELVVQDVQRSINVSRSRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGKIYVVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAESSSIYARASSLSARPASLVGSITTTSGVLTCKKGNRC