Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55830.t1 | XP_013447245.1 | 98.4 | 548 | 6 | 1 | 1 | 548 | 1 | 545 | 0.00E+00 | 1106.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55830.t1 | Q9LIR6 | 49.0 | 439 | 218 | 3 | 81 | 515 | 105 | 541 | 9.4e-122 | 438.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55830.t1 | A0A072TV05 | 98.4 | 548 | 6 | 1 | 1 | 548 | 1 | 545 | 0.0e+00 | 1106.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050403 | MS.gene55830 | 0.836261 | 1.04E-56 | -1.69E-46 |
| MS.gene050904 | MS.gene55830 | 0.805382 | 1.37E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene55830 | 0.806436 | 8.23E-50 | -1.69E-46 |
| MS.gene053284 | MS.gene55830 | 0.805581 | 1.25E-49 | -1.69E-46 |
| MS.gene053285 | MS.gene55830 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene55830 | 0.837342 | 5.50E-57 | -1.69E-46 |
| MS.gene055751 | MS.gene55830 | 0.833255 | 5.92E-56 | -1.69E-46 |
| MS.gene056283 | MS.gene55830 | 0.822179 | 2.72E-53 | -1.69E-46 |
| MS.gene056449 | MS.gene55830 | 0.861743 | 8.28E-64 | -1.69E-46 |
| MS.gene056903 | MS.gene55830 | 0.83671 | 7.98E-57 | -1.69E-46 |
| MS.gene06111 | MS.gene55830 | 0.999363 | 6.16E-306 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55830.t1 | MTR_8g099775 | 98.358 | 548 | 6 | 1 | 1 | 548 | 1 | 545 | 0.0 | 1115 |
| MS.gene55830.t1 | MTR_4g099110 | 45.098 | 510 | 263 | 9 | 19 | 522 | 13 | 511 | 1.28e-145 | 430 |
| MS.gene55830.t1 | MTR_5g013640 | 44.898 | 490 | 242 | 7 | 30 | 519 | 51 | 512 | 2.43e-144 | 427 |
| MS.gene55830.t1 | MTR_5g013620 | 45.708 | 466 | 234 | 6 | 83 | 541 | 90 | 543 | 4.37e-143 | 424 |
| MS.gene55830.t1 | MTR_6g477780 | 50.146 | 343 | 167 | 3 | 175 | 515 | 11 | 351 | 7.13e-120 | 358 |
| MS.gene55830.t1 | MTR_4g045667 | 36.842 | 437 | 265 | 7 | 83 | 514 | 14 | 444 | 1.59e-102 | 318 |
| MS.gene55830.t1 | MTR_2g089030 | 37.045 | 440 | 262 | 8 | 83 | 515 | 87 | 518 | 1.40e-100 | 316 |
| MS.gene55830.t1 | MTR_7g077410 | 35.657 | 502 | 307 | 10 | 18 | 512 | 200 | 692 | 2.89e-92 | 297 |
| MS.gene55830.t1 | MTR_2g020240 | 37.585 | 439 | 258 | 8 | 77 | 513 | 78 | 502 | 3.70e-90 | 287 |
| MS.gene55830.t1 | MTR_2g020240 | 37.302 | 378 | 222 | 7 | 137 | 513 | 4 | 367 | 4.47e-77 | 249 |
| MS.gene55830.t1 | MTR_5g026210 | 35.468 | 406 | 254 | 6 | 83 | 487 | 219 | 617 | 4.41e-73 | 245 |
| MS.gene55830.t1 | MTR_5g026210 | 37.544 | 285 | 173 | 4 | 83 | 366 | 219 | 499 | 4.88e-54 | 191 |
| MS.gene55830.t1 | MTR_6g057740 | 61.184 | 152 | 39 | 1 | 8 | 159 | 18 | 149 | 5.53e-45 | 156 |
| MS.gene55830.t1 | MTR_5g026210 | 37.705 | 244 | 148 | 3 | 83 | 325 | 219 | 459 | 7.91e-44 | 162 |
| MS.gene55830.t1 | MTR_7g078720 | 72.826 | 92 | 11 | 1 | 60 | 151 | 11 | 88 | 1.13e-30 | 115 |
| MS.gene55830.t1 | MTR_2g062780 | 71.111 | 90 | 12 | 1 | 62 | 151 | 16 | 91 | 1.66e-28 | 109 |
| MS.gene55830.t1 | MTR_6g477770 | 43.519 | 108 | 61 | 0 | 64 | 171 | 88 | 195 | 9.08e-23 | 96.7 |
| MS.gene55830.t1 | MTR_4g036105 | 72.973 | 74 | 6 | 1 | 78 | 151 | 48 | 107 | 4.29e-20 | 86.3 |
| MS.gene55830.t1 | MTR_2g451050 | 72.368 | 76 | 7 | 1 | 76 | 151 | 18 | 79 | 6.21e-20 | 84.7 |
| MS.gene55830.t1 | MTR_2g081160 | 87.273 | 55 | 7 | 0 | 76 | 130 | 54 | 108 | 1.92e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55830.t1 | AT4G17090 | 45.363 | 496 | 260 | 8 | 27 | 519 | 30 | 517 | 5.06e-150 | 442 |
| MS.gene55830.t1 | AT3G23920 | 48.970 | 437 | 217 | 3 | 83 | 515 | 107 | 541 | 1.98e-148 | 439 |
| MS.gene55830.t1 | AT5G55700 | 39.597 | 447 | 255 | 6 | 78 | 514 | 88 | 529 | 5.49e-104 | 323 |
| MS.gene55830.t1 | AT4G15210 | 36.818 | 440 | 262 | 8 | 83 | 514 | 15 | 446 | 2.32e-102 | 318 |
| MS.gene55830.t1 | AT4G00490 | 38.799 | 433 | 256 | 6 | 83 | 512 | 96 | 522 | 3.47e-102 | 318 |
| MS.gene55830.t1 | AT4G15210 | 38.718 | 390 | 231 | 6 | 83 | 470 | 15 | 398 | 9.00e-97 | 300 |
| MS.gene55830.t1 | AT4G15210 | 36.409 | 401 | 240 | 7 | 121 | 514 | 1 | 393 | 1.76e-93 | 293 |
| MS.gene55830.t1 | AT4G15210 | 36.409 | 401 | 240 | 7 | 121 | 514 | 1 | 393 | 1.76e-93 | 293 |
| MS.gene55830.t1 | AT2G32290 | 34.615 | 442 | 275 | 8 | 83 | 518 | 79 | 512 | 7.52e-89 | 285 |
| MS.gene55830.t1 | AT2G45880 | 37.300 | 437 | 257 | 8 | 83 | 512 | 249 | 675 | 1.47e-84 | 277 |
| MS.gene55830.t1 | AT5G45300 | 37.913 | 393 | 237 | 5 | 83 | 474 | 254 | 640 | 1.53e-77 | 258 |
| MS.gene55830.t1 | AT5G45300 | 37.913 | 393 | 237 | 5 | 83 | 474 | 256 | 642 | 1.86e-77 | 258 |
| MS.gene55830.t1 | AT5G45300 | 37.913 | 393 | 237 | 5 | 83 | 474 | 270 | 656 | 2.12e-77 | 258 |
| MS.gene55830.t1 | AT5G18670 | 35.586 | 444 | 242 | 10 | 84 | 513 | 89 | 502 | 4.20e-75 | 248 |
| MS.gene55830.t1 | AT5G55700 | 39.359 | 343 | 194 | 6 | 181 | 514 | 29 | 366 | 2.44e-73 | 238 |
Find 147 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTTGAACCACGAAAT+TGG | 0.143509 | 4.3:+4225277 | MS.gene55830:CDS |
| GAGAAGCTGAAACTATATTT+AGG | 0.201163 | 4.3:+4224851 | MS.gene55830:CDS |
| AAACGCCTCTGCAACAAATA+TGG | 0.216700 | 4.3:+4224657 | MS.gene55830:CDS |
| ACGAAGCCATATTTAGCTTT+TGG | 0.256403 | 4.3:-4224455 | None:intergenic |
| GTCTTCCCAAAAGCTAAATA+TGG | 0.264456 | 4.3:+4224449 | MS.gene55830:CDS |
| GTAGGATACCGCTTCCTCTA+TGG | 0.302112 | 4.3:+4224069 | MS.gene55830:intron |
| AGTCCACATATCAGCAAAAT+TGG | 0.309679 | 4.3:+4224882 | MS.gene55830:CDS |
| CTTGCTGCTGCTGGTGTAGA+AGG | 0.323804 | 4.3:+4222735 | MS.gene55830:CDS |
| AAGAAACCGCGAATCGGGTT+TGG | 0.326549 | 4.3:-4222506 | None:intergenic |
| TTGGTTTAGAGGGGAAGATT+TGG | 0.351264 | 4.3:+4222679 | MS.gene55830:CDS |
| AAACCTTCAGGGCTACAATC+TGG | 0.351490 | 4.3:-4225081 | None:intergenic |
| TTGAAAGCGCTTGCTGCTGC+TGG | 0.359361 | 4.3:+4222726 | MS.gene55830:CDS |
| CTACGCATCTTTAGTAAATA+CGG | 0.369936 | 4.3:+4225000 | MS.gene55830:CDS |
| AAGGTGTTGTGGTGGAGATT+TGG | 0.370047 | 4.3:+4222754 | MS.gene55830:CDS |
| AGAAACCGCGAATCGGGTTT+GGG | 0.371994 | 4.3:-4222505 | None:intergenic |
| AACGACAACATCATCGCTTT+CGG | 0.380681 | 4.3:-4222705 | None:intergenic |
| AGAAGCTGAAACTATATTTA+GGG | 0.382766 | 4.3:+4224852 | MS.gene55830:CDS |
| TGGGGAAATGGCGGTCCATT+TGG | 0.384071 | 4.3:+4224691 | MS.gene55830:CDS |
| AAGATCGTGGTGAATCTCAT+AGG | 0.387121 | 4.3:-4222598 | None:intergenic |
| GTCTCACAAATCGGGTAAAC+CGG | 0.389454 | 4.3:-4225302 | None:intergenic |
| GTTTCCTACAGAATTTAATC+TGG | 0.391185 | 4.3:-4225352 | None:intergenic |
| CATGTTTGAACCACGAAATT+GGG | 0.391387 | 4.3:+4225278 | MS.gene55830:CDS |
| GTGTTGTGGTGGAGATTTGG+TGG | 0.392986 | 4.3:+4222757 | MS.gene55830:CDS |
| CAGACATTCGTCTCACAAAT+CGG | 0.392988 | 4.3:-4225311 | None:intergenic |
| AGTTGTCTAAGAAAACCTTC+AGG | 0.398518 | 4.3:-4225093 | None:intergenic |
| TTACTAAAGATGCGTAGAAT+TGG | 0.401779 | 4.3:-4224994 | None:intergenic |
| CTTACGAAGTTGAATGAGAA+TGG | 0.402055 | 4.3:-4225243 | None:intergenic |
| CTCATTCAACTTCGTAAGAA+TGG | 0.402837 | 4.3:+4225248 | MS.gene55830:CDS |
| TGAATTAGCACATACCCATT+AGG | 0.406372 | 4.3:-4222915 | None:intergenic |
| AAAATCCGCATATGCTTGAA+TGG | 0.412967 | 4.3:-4224210 | None:intergenic |
| CGGAAGTGAGTGAAGGTGAA+AGG | 0.414352 | 4.3:-4222477 | None:intergenic |
| GGTGAAATCTGTTGGTTTAG+AGG | 0.424555 | 4.3:+4222668 | MS.gene55830:CDS |
| GTTGGACGAGTTAAATCGTT+GGG | 0.428358 | 4.3:-4222447 | None:intergenic |
| CAAATATGGGAAAGCGTGAA+TGG | 0.440306 | 4.3:+4224671 | MS.gene55830:CDS |
| GCCGGTGTTTGTGACACTTC+CGG | 0.442531 | 4.3:+4222647 | MS.gene55830:CDS |
| AACGCCTCTGCAACAAATAT+GGG | 0.447146 | 4.3:+4224658 | MS.gene55830:CDS |
| GTGCAGATTGGCATGGGTCC+CGG | 0.447828 | 4.3:+4224402 | MS.gene55830:CDS |
| CTCTGTGACATATCACTTGA+AGG | 0.448345 | 4.3:+4225132 | MS.gene55830:CDS |
| ATGGCTTCGTCTCGTGAACT+TGG | 0.448401 | 4.3:+4224468 | MS.gene55830:CDS |
| ACGGGAAGAAACCGCGAATC+GGG | 0.450955 | 4.3:-4222511 | None:intergenic |
| AGAGTTTCAGTGCTATGATA+AGG | 0.451383 | 4.3:+4224491 | MS.gene55830:CDS |
| CAGGGAGTGCAGATTGGCAT+GGG | 0.455762 | 4.3:+4224396 | MS.gene55830:intron |
| CAAAATTGGCTGCCATTCAC+TGG | 0.455908 | 4.3:+4224896 | MS.gene55830:CDS |
| GGAAAGCGTGAATGGGGAAA+TGG | 0.458343 | 4.3:+4224679 | MS.gene55830:CDS |
| AAATATGGGAAAGCGTGAAT+GGG | 0.460533 | 4.3:+4224672 | MS.gene55830:CDS |
| TCAACTGATTTGGATGATGA+TGG | 0.461314 | 4.3:+4225165 | MS.gene55830:CDS |
| TTAGAAACGAGGGTGGCTCT+TGG | 0.461348 | 4.3:+4224755 | MS.gene55830:CDS |
| GTATCGTGAACTTGTTATGA+TGG | 0.466774 | 4.3:+4222824 | MS.gene55830:CDS |
| TGTTGTGGTGGAGATTTGGT+GGG | 0.469843 | 4.3:+4222758 | MS.gene55830:CDS |
| CTGTCAGAAAATGCTAAATC+CGG | 0.471791 | 4.3:-4224116 | None:intergenic |
| GGAAGTGAGTGAAGGTGAAA+GGG | 0.473744 | 4.3:-4222476 | None:intergenic |
| CTCATGGTGATGATCCTAAT+GGG | 0.476669 | 4.3:+4222901 | MS.gene55830:CDS |
| CTAAAGAATTCAGAACGCTC+AGG | 0.477015 | 4.3:-4224736 | None:intergenic |
| GACGGGAAGAAACCGCGAAT+CGG | 0.477036 | 4.3:-4222512 | None:intergenic |
| AAAACTAGTTTCAAGAGTAC+TGG | 0.477347 | 4.3:-4225428 | None:intergenic |
| TAGGATACCGCTTCCTCTAT+GGG | 0.478776 | 4.3:+4224070 | MS.gene55830:intron |
| ATCAGCCTAGGGTTTATGAT+TGG | 0.480305 | 4.3:+4222796 | MS.gene55830:CDS |
| TAGCCGGCTGTTAACTCTGA+TGG | 0.481850 | 4.3:-4224940 | None:intergenic |
| AACTACGGTGGCTGCAGAAG+TGG | 0.483328 | 4.3:+4225386 | MS.gene55830:CDS |
| GGCTCTTGGAACATGCCATA+TGG | 0.483956 | 4.3:+4224769 | MS.gene55830:CDS |
| TTCAAGAGTACTGGTATAGC+TGG | 0.484218 | 4.3:-4225419 | None:intergenic |
| GTCAAACTTCCAGTGCCAAA+TGG | 0.486962 | 4.3:-4224706 | None:intergenic |
| GTGAAATCTGTTGGTTTAGA+GGG | 0.488210 | 4.3:+4222669 | MS.gene55830:CDS |
| ACTCATGGTGATGATCCTAA+TGG | 0.489575 | 4.3:+4222900 | MS.gene55830:CDS |
| CGAGATTGAACCGCCGGCAT+CGG | 0.493628 | 4.3:-4222553 | None:intergenic |
| GCAGGGAGTGCAGATTGGCA+TGG | 0.495639 | 4.3:+4224395 | MS.gene55830:intron |
| GGTTCAATCTCGCCGGAAAA+CGG | 0.500082 | 4.3:+4222564 | MS.gene55830:CDS |
| GGCTGTTAACTCTGATGGAT+GGG | 0.500887 | 4.3:-4224935 | None:intergenic |
| GCATGTCTGAGTACCATTCA+AGG | 0.504578 | 4.3:-4224801 | None:intergenic |
| AATATTGAATACATTTCCCT+CGG | 0.508318 | 4.3:+4224152 | MS.gene55830:CDS |
| AAATCCGCATATGCTTGAAT+GGG | 0.510254 | 4.3:-4224209 | None:intergenic |
| GTTTAGAGGGGAAGATTTGG+AGG | 0.510688 | 4.3:+4222682 | MS.gene55830:CDS |
| AACCTTCAGGGCTACAATCT+GGG | 0.510835 | 4.3:-4225080 | None:intergenic |
| TGAGATGAAGGAAGGTGAGA+AGG | 0.511131 | 4.3:-4222421 | None:intergenic |
| AGACATTCGTCTCACAAATC+GGG | 0.511537 | 4.3:-4225310 | None:intergenic |
| GTTGTCTAAGAAAACCTTCA+GGG | 0.513719 | 4.3:-4225092 | None:intergenic |
| TTACGAAGTTGAATGAGAAT+GGG | 0.514956 | 4.3:-4225242 | None:intergenic |
| CGGCTGTTAACTCTGATGGA+TGG | 0.518375 | 4.3:-4224936 | None:intergenic |
| GTTATGATGGCTTGCATGTG+TGG | 0.519162 | 4.3:+4222837 | MS.gene55830:CDS |
| TTTCATCAACATGGCACTCA+TGG | 0.519586 | 4.3:+4222885 | MS.gene55830:CDS |
| GGATTTAGAAGAGTTGAGAC+GGG | 0.522871 | 4.3:-4222529 | None:intergenic |
| TGATGAGATACAGAAAGATC+CGG | 0.523575 | 4.3:+4224097 | MS.gene55830:CDS |
| TTCCGGCGAGATTGAACCGC+CGG | 0.526970 | 4.3:-4222559 | None:intergenic |
| CTTTCCCATATTTGTTGCAG+AGG | 0.528233 | 4.3:-4224662 | None:intergenic |
| AACCCAGATTGTAGCCCTGA+AGG | 0.531011 | 4.3:+4225078 | MS.gene55830:CDS |
| GTTAAAAGTATTATAATAGC+CGG | 0.531118 | 4.3:-4224956 | None:intergenic |
| TTTGGTGGGGTGTTGTTGAA+AGG | 0.531856 | 4.3:+4222772 | MS.gene55830:CDS |
| TCTTCTAAATCCTCCGATGC+CGG | 0.533038 | 4.3:+4222540 | MS.gene55830:CDS |
| TCTCCGCAGCGTCGGAGACG+TGG | 0.545759 | 4.3:+4222621 | MS.gene55830:CDS |
| GGAGAACGTCCACGCAGCAC+AGG | 0.549122 | 4.3:-4224188 | None:intergenic |
| TTGTTGAAAGGAATCAGCCT+AGG | 0.551424 | 4.3:+4222784 | MS.gene55830:CDS |
| CGAGCCAGATTAAATTCTGT+AGG | 0.552381 | 4.3:+4225348 | MS.gene55830:CDS |
| GTAATGATAAAGCCAAGGTA+TGG | 0.555777 | 4.3:-4224260 | None:intergenic |
| GCGTCGGAGACGTGGATCGC+CGG | 0.556399 | 4.3:+4222629 | MS.gene55830:CDS |
| TTGAACCACGAAATTGGGAC+CGG | 0.557825 | 4.3:+4225283 | MS.gene55830:CDS |
| TTTGTGAGACGAATGTCTGC+TGG | 0.561115 | 4.3:+4225315 | MS.gene55830:CDS |
| AGATCGTGGTGAATCTCATA+GGG | 0.561305 | 4.3:-4222597 | None:intergenic |
| TCAAGCACCCATAGAGGAAG+CGG | 0.562053 | 4.3:-4224077 | None:intergenic |
| ACACTTCCGGTGAAATCTGT+TGG | 0.566616 | 4.3:+4222660 | MS.gene55830:CDS |
| AAGGTGAAAGGGAGACGAGT+TGG | 0.570462 | 4.3:-4222465 | None:intergenic |
| AATGGCGGTCCATTTGGCAC+TGG | 0.570935 | 4.3:+4224697 | MS.gene55830:CDS |
| ATCTCATCAAGCACCCATAG+AGG | 0.572697 | 4.3:-4224083 | None:intergenic |
| GTTGTGGTGGAGATTTGGTG+GGG | 0.574564 | 4.3:+4222759 | MS.gene55830:CDS |
| GTAAACCGGTCCCAATTTCG+TGG | 0.574792 | 4.3:-4225288 | None:intergenic |
| GATTGAACCGCCGGCATCGG+AGG | 0.577246 | 4.3:-4222550 | None:intergenic |
| TGCCGGCGGTTCAATCTCGC+CGG | 0.579977 | 4.3:+4222557 | MS.gene55830:CDS |
| ACTACGGTGGCTGCAGAAGT+GGG | 0.580319 | 4.3:+4225387 | MS.gene55830:CDS |
| AGGATTTAGAAGAGTTGAGA+CGG | 0.586326 | 4.3:-4222530 | None:intergenic |
| ATATTGAATACATTTCCCTC+GGG | 0.586433 | 4.3:+4224153 | MS.gene55830:CDS |
| AAACCTACAATTGAAAACTA+CGG | 0.587152 | 4.3:+4225371 | MS.gene55830:CDS |
| TCTAAATCCTCCGATGCCGG+CGG | 0.588162 | 4.3:+4222543 | MS.gene55830:CDS |
| CTAGGGTTTATGATTGGCGA+GGG | 0.590762 | 4.3:+4222802 | MS.gene55830:CDS |
| AGTTGGACGAGTTAAATCGT+TGG | 0.595018 | 4.3:-4222448 | None:intergenic |
| CATCCATCAGAGTTAACAGC+CGG | 0.595227 | 4.3:+4224937 | MS.gene55830:CDS |
| TTCTCCCATTCAAGCATATG+CGG | 0.599622 | 4.3:+4224205 | MS.gene55830:CDS |
| AGGATATCTTAGTTCACCAC+CGG | 0.601710 | 4.3:-4224421 | None:intergenic |
| TGTTGAAAGGAATCAGCCTA+GGG | 0.602886 | 4.3:+4222785 | MS.gene55830:CDS |
| CCTCGCCAATCATAAACCCT+AGG | 0.603152 | 4.3:-4222801 | None:intergenic |
| TGCTGGTGTAGAAGGTGTTG+TGG | 0.603246 | 4.3:+4222743 | MS.gene55830:CDS |
| TCAGACATGCTGCTACTGCA+TGG | 0.606720 | 4.3:+4224814 | MS.gene55830:CDS |
| CCTAGGGTTTATGATTGGCG+AGG | 0.607719 | 4.3:+4222801 | MS.gene55830:CDS |
| GTTCTTGCATTTCATCAACA+TGG | 0.608340 | 4.3:+4222876 | MS.gene55830:CDS |
| TTCTGAATTCTTTAGAAACG+AGG | 0.609976 | 4.3:+4224744 | MS.gene55830:CDS |
| TGTGACATAGTGCCAGTGAA+TGG | 0.610416 | 4.3:-4224908 | None:intergenic |
| ACCGGAAGTGTCACAAACAC+CGG | 0.613731 | 4.3:-4222648 | None:intergenic |
| TCTAAACCAACAGATTTCAC+CGG | 0.614796 | 4.3:-4222666 | None:intergenic |
| TCTGAATTCTTTAGAAACGA+GGG | 0.620733 | 4.3:+4224745 | MS.gene55830:CDS |
| TGGACGAGTTAAATCGTTGG+GGG | 0.624921 | 4.3:-4222445 | None:intergenic |
| TTACTGTAATGATAAAGCCA+AGG | 0.630974 | 4.3:-4224265 | None:intergenic |
| GAAGCTGAAACTATATTTAG+GGG | 0.631641 | 4.3:+4224853 | MS.gene55830:CDS |
| TGAAATCTGTTGGTTTAGAG+GGG | 0.634831 | 4.3:+4222670 | MS.gene55830:CDS |
| AATATGGGAAAGCGTGAATG+GGG | 0.635783 | 4.3:+4224673 | MS.gene55830:CDS |
| AAGCGTGAATGGGGAAATGG+CGG | 0.635989 | 4.3:+4224682 | MS.gene55830:CDS |
| TTGGACGAGTTAAATCGTTG+GGG | 0.646278 | 4.3:-4222446 | None:intergenic |
| GACGCTGCGGAGAAAGATCG+TGG | 0.646699 | 4.3:-4222611 | None:intergenic |
| ACGATCTTTCTCCGCAGCGT+CGG | 0.649813 | 4.3:+4222613 | MS.gene55830:CDS |
| TCAATCTCGCCGGAAAACGG+CGG | 0.651635 | 4.3:+4222567 | MS.gene55830:CDS |
| GGATGATGATGGATTCACTC+AGG | 0.656015 | 4.3:+4225176 | MS.gene55830:CDS |
| GATATTCTTCCTGTGCTGCG+TGG | 0.661803 | 4.3:+4224179 | MS.gene55830:CDS |
| CAGGAAGAATATCACACCCG+AGG | 0.671745 | 4.3:-4224169 | None:intergenic |
| TGGTGTAGAAGGTGTTGTGG+TGG | 0.672535 | 4.3:+4222746 | MS.gene55830:CDS |
| GAATTCTTTAGAAACGAGGG+TGG | 0.674880 | 4.3:+4224748 | MS.gene55830:CDS |
| GGATATCTTAGTTCACCACC+GGG | 0.676959 | 4.3:-4224420 | None:intergenic |
| AGGAAGAATATCACACCCGA+GGG | 0.680047 | 4.3:-4224168 | None:intergenic |
| GATCCACGTCTCCGACGCTG+CGG | 0.684486 | 4.3:-4222624 | None:intergenic |
| CAGATTGGCATGGGTCCCGG+TGG | 0.697383 | 4.3:+4224405 | MS.gene55830:CDS |
| CCTACAATTGAAAACTACGG+TGG | 0.700747 | 4.3:+4225374 | MS.gene55830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATTAATAATGCAAAT+CGG | - | chr4.3:4224560-4224579 | None:intergenic | 15.0% |
| !! | ACATATGTTACATTAAATTT+AGG | - | chr4.3:4223061-4223080 | None:intergenic | 15.0% |
| !! | ATTATTCAAAATAAACCAAA+TGG | - | chr4.3:4223978-4223997 | None:intergenic | 15.0% |
| !! | CATATGTTACATTAAATTTA+GGG | - | chr4.3:4223060-4223079 | None:intergenic | 15.0% |
| !! | TTGTTGAATAAAAAACTTAT+AGG | - | chr4.3:4223913-4223932 | None:intergenic | 15.0% |
| !!! | CAAATGAGATTTTAATTTTA+GGG | - | chr4.3:4223180-4223199 | None:intergenic | 15.0% |
| !!! | CTATTATAATACTTTTAACA+GGG | + | chr4.3:4224960-4224979 | MS.gene55830:CDS | 15.0% |
| !!! | TGAATAATTACTATTTTTGT+AGG | + | chr4.3:4223990-4224009 | MS.gene55830:intron | 15.0% |
| !! | AAAATTAAAATCTCATTTGG+AGG | + | chr4.3:4223181-4223200 | MS.gene55830:intron | 20.0% |
| !! | ATACAATTACATTCCTATTT+AGG | + | chr4.3:4223466-4223485 | MS.gene55830:intron | 20.0% |
| !! | CCTAAAATTAAAATCTCATT+TGG | + | chr4.3:4223178-4223197 | MS.gene55830:intron | 20.0% |
| !! | CTCAAAAATTGAATATTCAT+TGG | - | chr4.3:4224327-4224346 | None:intergenic | 20.0% |
| !! | TATTCAATGTACATAAAAAG+TGG | + | chr4.3:4223595-4223614 | MS.gene55830:intron | 20.0% |
| !!! | CAGTTTAATTGAATTTTGAA+TGG | + | chr4.3:4223011-4223030 | MS.gene55830:intron | 20.0% |
| !!! | CCAAATGAGATTTTAATTTT+AGG | - | chr4.3:4223181-4223200 | None:intergenic | 20.0% |
| !!! | GCTATTATAATACTTTTAAC+AGG | + | chr4.3:4224959-4224978 | MS.gene55830:CDS | 20.0% |
| !!! | GTTAAAAGTATTATAATAGC+CGG | - | chr4.3:4224959-4224978 | None:intergenic | 20.0% |
| !!! | GTTTTAAAAAGATAAGAGAA+AGG | + | chr4.3:4223368-4223387 | MS.gene55830:intron | 20.0% |
| !!! | TCAAAATTTTTCAACTGATT+TGG | + | chr4.3:4225155-4225174 | MS.gene55830:CDS | 20.0% |
| ! | AAAATTTATTGCTGTGTTCT+AGG | + | chr4.3:4224521-4224540 | MS.gene55830:intron | 25.0% |
| ! | AAACCTACAATTGAAAACTA+CGG | + | chr4.3:4225371-4225390 | MS.gene55830:CDS | 25.0% |
| ! | AAAGAAAATGTAATGCAAGT+AGG | + | chr4.3:4223326-4223345 | MS.gene55830:intron | 25.0% |
| ! | AAATATTTATATACTCCCTC+CGG | - | chr4.3:4223641-4223660 | None:intergenic | 25.0% |
| ! | AATATTGAATACATTTCCCT+CGG | + | chr4.3:4224152-4224171 | MS.gene55830:CDS | 25.0% |
| ! | AGAAGCTGAAACTATATTTA+GGG | + | chr4.3:4224852-4224871 | MS.gene55830:CDS | 25.0% |
| ! | ATTGTAATTTAGATGTTGGA+TGG | + | chr4.3:4223804-4223823 | MS.gene55830:intron | 25.0% |
| ! | CCTATCAATAAACACATTAA+AGG | - | chr4.3:4222960-4222979 | None:intergenic | 25.0% |
| ! | CCTTTAATGTGTTTATTGAT+AGG | + | chr4.3:4222957-4222976 | MS.gene55830:intron | 25.0% |
| ! | TCAAGGAAAAATTTACCATA+TGG | - | chr4.3:4224787-4224806 | None:intergenic | 25.0% |
| ! | TGTGATTGTAATTTAGATGT+TGG | + | chr4.3:4223800-4223819 | MS.gene55830:intron | 25.0% |
| ! | TTAAGCGTATAAAACACTTT+AGG | + | chr4.3:4223700-4223719 | MS.gene55830:intron | 25.0% |
| !! | AACTTTCCTTTTCTATTGTT+TGG | + | chr4.3:4224607-4224626 | MS.gene55830:intron | 25.0% |
| !! | ATGGTAAATTTTTCCTTGAA+TGG | + | chr4.3:4224788-4224807 | MS.gene55830:CDS | 25.0% |
| !! | ATGTCAAAATTTTACTCAGA+TGG | + | chr4.3:4225207-4225226 | MS.gene55830:CDS | 25.0% |
| !! | TATAATACTTTTAACAGGGA+TGG | + | chr4.3:4224964-4224983 | MS.gene55830:CDS | 25.0% |
| !! | TGTCAAAATTTTACTCAGAT+GGG | + | chr4.3:4225208-4225227 | MS.gene55830:CDS | 25.0% |
| !!! | TCTTTACTTTTTCTAACGAA+GGG | - | chr4.3:4223311-4223330 | None:intergenic | 25.0% |
| !!! | TTCTTTACTTTTTCTAACGA+AGG | - | chr4.3:4223312-4223331 | None:intergenic | 25.0% |
| AAAATGTAATGCAAGTAGGT+AGG | + | chr4.3:4223330-4223349 | MS.gene55830:intron | 30.0% | |
| ACATGAGATGTAACCTAAAT+AGG | - | chr4.3:4223482-4223501 | None:intergenic | 30.0% | |
| ACCAAGTAAAATGAACTACA+AGG | - | chr4.3:4223753-4223772 | None:intergenic | 30.0% | |
| ATATTGAATACATTTCCCTC+GGG | + | chr4.3:4224153-4224172 | MS.gene55830:CDS | 30.0% | |
| ATCATTACAGTAAGGTTCTA+TGG | + | chr4.3:4224275-4224294 | MS.gene55830:intron | 30.0% | |
| ATGAAAGTTTGACAAAACCA+CGG | + | chr4.3:4223114-4223133 | MS.gene55830:intron | 30.0% | |
| CTACGCATCTTTAGTAAATA+CGG | + | chr4.3:4225000-4225019 | MS.gene55830:CDS | 30.0% | |
| CTATGGCTTATGATGATTTA+AGG | + | chr4.3:4224292-4224311 | MS.gene55830:intron | 30.0% | |
| CTTCTCACTCGATAATAAAA+AGG | - | chr4.3:4223671-4223690 | None:intergenic | 30.0% | |
| CTTTCACTTAGACAGATATA+CGG | + | chr4.3:4223835-4223854 | MS.gene55830:intron | 30.0% | |
| GAAGCTGAAACTATATTTAG+GGG | + | chr4.3:4224853-4224872 | MS.gene55830:CDS | 30.0% | |
| GAGAAGCTGAAACTATATTT+AGG | + | chr4.3:4224851-4224870 | MS.gene55830:CDS | 30.0% | |
| GTATCATGATCCTAAAAGAT+AGG | - | chr4.3:4223450-4223469 | None:intergenic | 30.0% | |
| GTTTCCTACAGAATTTAATC+TGG | - | chr4.3:4225355-4225374 | None:intergenic | 30.0% | |
| TTACGAAGTTGAATGAGAAT+GGG | - | chr4.3:4225245-4225264 | None:intergenic | 30.0% | |
| TTACTAAAGATGCGTAGAAT+TGG | - | chr4.3:4224997-4225016 | None:intergenic | 30.0% | |
| TTACTGTAATGATAAAGCCA+AGG | - | chr4.3:4224268-4224287 | None:intergenic | 30.0% | |
| ! | GGATTTTATGAGGGATTTTA+GGG | + | chr4.3:4224226-4224245 | MS.gene55830:CDS | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr4.3:4223619-4223638 | MS.gene55830:intron | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr4.3:4223638-4223619 | None:intergenic | 30.0% |
| ! | TCCTTGTAGTTCATTTTACT+TGG | + | chr4.3:4223749-4223768 | MS.gene55830:intron | 30.0% |
| ! | TCTGAATTCTTTAGAAACGA+GGG | + | chr4.3:4224745-4224764 | MS.gene55830:CDS | 30.0% |
| ! | TGTAGTTCATTTTACTTGGT+GGG | + | chr4.3:4223753-4223772 | MS.gene55830:intron | 30.0% |
| ! | TTCTGAATTCTTTAGAAACG+AGG | + | chr4.3:4224744-4224763 | MS.gene55830:CDS | 30.0% |
| ! | TTGTAGTTCATTTTACTTGG+TGG | + | chr4.3:4223752-4223771 | MS.gene55830:intron | 30.0% |
| ! | TTTTCTTAGACAACTTTTGC+TGG | + | chr4.3:4225101-4225120 | MS.gene55830:CDS | 30.0% |
| ! | TTTTGCTTATAATAGTGACC+GGG | - | chr4.3:4223639-4223620 | None:intergenic | 30.0% |
| !! | AAGATTTGCTCCTATCTTTT+AGG | + | chr4.3:4223437-4223456 | MS.gene55830:intron | 30.0% |
| !! | TAACGCATGATTTTTGTTGT+TGG | + | chr4.3:4223777-4223796 | MS.gene55830:intron | 30.0% |
| !! | TGTTTTGAGTATAGTCCATT+TGG | + | chr4.3:4223960-4223979 | MS.gene55830:intron | 30.0% |
| !! | TTGGCTTTATCATTACAGTA+AGG | + | chr4.3:4224267-4224286 | MS.gene55830:intron | 30.0% |
| !!! | AATTTTAGGGTACAGATTGA+CGG | - | chr4.3:4223167-4223186 | None:intergenic | 30.0% |
| AAAATCCGCATATGCTTGAA+TGG | - | chr4.3:4224213-4224232 | None:intergenic | 35.0% | |
| AAATCCGCATATGCTTGAAT+GGG | - | chr4.3:4224212-4224231 | None:intergenic | 35.0% | |
| AAGGATGAAACAATGGCAAT+GGG | - | chr4.3:4223734-4223753 | None:intergenic | 35.0% | |
| AAGTGGCCAAACAATAGAAA+AGG | - | chr4.3:4224616-4224635 | None:intergenic | 35.0% | |
| AATGTCTGAACATTCTACCT+GGG | + | chr4.3:4223931-4223950 | MS.gene55830:intron | 35.0% | |
| ACATGTTTGAACCACGAAAT+TGG | + | chr4.3:4225277-4225296 | MS.gene55830:CDS | 35.0% | |
| AGAGTTTCAGTGCTATGATA+AGG | + | chr4.3:4224491-4224510 | MS.gene55830:CDS | 35.0% | |
| AGGATTTAGAAGAGTTGAGA+CGG | - | chr4.3:4222533-4222552 | None:intergenic | 35.0% | |
| AGTCCACATATCAGCAAAAT+TGG | + | chr4.3:4224882-4224901 | MS.gene55830:CDS | 35.0% | |
| AGTTGTCTAAGAAAACCTTC+AGG | - | chr4.3:4225096-4225115 | None:intergenic | 35.0% | |
| CATGTTTGAACCACGAAATT+GGG | + | chr4.3:4225278-4225297 | MS.gene55830:CDS | 35.0% | |
| CTCATTCAACTTCGTAAGAA+TGG | + | chr4.3:4225248-4225267 | MS.gene55830:CDS | 35.0% | |
| CTGTCAGAAAATGCTAAATC+CGG | - | chr4.3:4224119-4224138 | None:intergenic | 35.0% | |
| CTTACGAAGTTGAATGAGAA+TGG | - | chr4.3:4225246-4225265 | None:intergenic | 35.0% | |
| GAACTACAAGGATGAAACAA+TGG | - | chr4.3:4223741-4223760 | None:intergenic | 35.0% | |
| GTAATGATAAAGCCAAGGTA+TGG | - | chr4.3:4224263-4224282 | None:intergenic | 35.0% | |
| GTCTTCCCAAAAGCTAAATA+TGG | + | chr4.3:4224449-4224468 | MS.gene55830:CDS | 35.0% | |
| GTTCTTGCATTTCATCAACA+TGG | + | chr4.3:4222876-4222895 | MS.gene55830:CDS | 35.0% | |
| GTTGTCTAAGAAAACCTTCA+GGG | - | chr4.3:4225095-4225114 | None:intergenic | 35.0% | |
| TCTAAACCAACAGATTTCAC+CGG | - | chr4.3:4222669-4222688 | None:intergenic | 35.0% | |
| TGAATTAGCACATACCCATT+AGG | - | chr4.3:4222918-4222937 | None:intergenic | 35.0% | |
| TGATGAGATACAGAAAGATC+CGG | + | chr4.3:4224097-4224116 | MS.gene55830:CDS | 35.0% | |
| TTAGAGAAGCAAGCATATAC+TGG | - | chr4.3:4224639-4224658 | None:intergenic | 35.0% | |
| TTTCAGTGCTATGATAAGGT+TGG | + | chr4.3:4224495-4224514 | MS.gene55830:intron | 35.0% | |
| TTTGCTTATAATAGTGACCG+GGG | - | chr4.3:4223640-4223621 | None:intergenic | 35.0% | |
| ! | AAATATGGGAAAGCGTGAAT+GGG | + | chr4.3:4224672-4224691 | MS.gene55830:CDS | 35.0% |
| ! | AAGCATATGCGGATTTTATG+AGG | + | chr4.3:4224216-4224235 | MS.gene55830:CDS | 35.0% |
| ! | AATAGTGTATGCTGATAGTG+TGG | + | chr4.3:4223870-4223889 | MS.gene55830:intron | 35.0% |
| ! | AGCATATGCGGATTTTATGA+GGG | + | chr4.3:4224217-4224236 | MS.gene55830:CDS | 35.0% |
| ! | ATAGTGTATGCTGATAGTGT+GGG | + | chr4.3:4223871-4223890 | MS.gene55830:intron | 35.0% |
| ! | CGGATTTTATGAGGGATTTT+AGG | + | chr4.3:4224225-4224244 | MS.gene55830:CDS | 35.0% |
| ! | GTAACTCTGTTCATTTTGCA+GGG | + | chr4.3:4224378-4224397 | MS.gene55830:intron | 35.0% |
| ! | TCACGTAGCTTTTGTAGTAT+CGG | - | chr4.3:4223084-4223103 | None:intergenic | 35.0% |
| ! | TGTAACTCTGTTCATTTTGC+AGG | + | chr4.3:4224377-4224396 | MS.gene55830:intron | 35.0% |
| ! | TTAGCATTTTCTGACAGGTT+TGG | + | chr4.3:4224122-4224141 | MS.gene55830:CDS | 35.0% |
| !! | GTATCGTGAACTTGTTATGA+TGG | + | chr4.3:4222824-4222843 | MS.gene55830:CDS | 35.0% |
| !! | GTGAAATCTGTTGGTTTAGA+GGG | + | chr4.3:4222669-4222688 | MS.gene55830:CDS | 35.0% |
| !! | TCAACTGATTTGGATGATGA+TGG | + | chr4.3:4225165-4225184 | MS.gene55830:CDS | 35.0% |
| !! | TGAAATCTGTTGGTTTAGAG+GGG | + | chr4.3:4222670-4222689 | MS.gene55830:CDS | 35.0% |
| !!! | ACGAAGCCATATTTAGCTTT+TGG | - | chr4.3:4224458-4224477 | None:intergenic | 35.0% |
| !!! | CGAAGCCATATTTAGCTTTT+GGG | - | chr4.3:4224457-4224476 | None:intergenic | 35.0% |
| AAACGCCTCTGCAACAAATA+TGG | + | chr4.3:4224657-4224676 | MS.gene55830:CDS | 40.0% | |
| AAAGTTTGACAAAACCACGG+TGG | + | chr4.3:4223117-4223136 | MS.gene55830:intron | 40.0% | |
| AACGACAACATCATCGCTTT+CGG | - | chr4.3:4222708-4222727 | None:intergenic | 40.0% | |
| AACGCCTCTGCAACAAATAT+GGG | + | chr4.3:4224658-4224677 | MS.gene55830:CDS | 40.0% | |
| AAGATCGTGGTGAATCTCAT+AGG | - | chr4.3:4222601-4222620 | None:intergenic | 40.0% | |
| AAGCAAGCATATACTGGAAG+TGG | - | chr4.3:4224633-4224652 | None:intergenic | 40.0% | |
| AGACATTCGTCTCACAAATC+GGG | - | chr4.3:4225313-4225332 | None:intergenic | 40.0% | |
| AGATCGTGGTGAATCTCATA+GGG | - | chr4.3:4222600-4222619 | None:intergenic | 40.0% | |
| AGGATATCTTAGTTCACCAC+CGG | - | chr4.3:4224424-4224443 | None:intergenic | 40.0% | |
| AGTTGGACGAGTTAAATCGT+TGG | - | chr4.3:4222451-4222470 | None:intergenic | 40.0% | |
| ATCAGCCTAGGGTTTATGAT+TGG | + | chr4.3:4222796-4222815 | MS.gene55830:CDS | 40.0% | |
| CAAGGATGAAACAATGGCAA+TGG | - | chr4.3:4223735-4223754 | None:intergenic | 40.0% | |
| CAATGTCTGAACATTCTACC+TGG | + | chr4.3:4223930-4223949 | MS.gene55830:intron | 40.0% | |
| CAGACATTCGTCTCACAAAT+CGG | - | chr4.3:4225314-4225333 | None:intergenic | 40.0% | |
| CCTACAATTGAAAACTACGG+TGG | + | chr4.3:4225374-4225393 | MS.gene55830:CDS | 40.0% | |
| CGAGCCAGATTAAATTCTGT+AGG | + | chr4.3:4225348-4225367 | MS.gene55830:CDS | 40.0% | |
| CTAAAGAATTCAGAACGCTC+AGG | - | chr4.3:4224739-4224758 | None:intergenic | 40.0% | |
| CTACAAAAGCTACGTGAAGT+CGG | + | chr4.3:4223087-4223106 | MS.gene55830:intron | 40.0% | |
| CTCTGTGACATATCACTTGA+AGG | + | chr4.3:4225132-4225151 | MS.gene55830:CDS | 40.0% | |
| GGATTTAGAAGAGTTGAGAC+GGG | - | chr4.3:4222532-4222551 | None:intergenic | 40.0% | |
| GTTGGACGAGTTAAATCGTT+GGG | - | chr4.3:4222450-4222469 | None:intergenic | 40.0% | |
| TACTCAAAACAAGACTACCC+AGG | - | chr4.3:4223951-4223970 | None:intergenic | 40.0% | |
| TGCAAGTAGGTAGGTATCTA+AGG | + | chr4.3:4223339-4223358 | MS.gene55830:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr4.3:4223623-4223642 | MS.gene55830:intron | 40.0% | |
| TGTTGAAAGGAATCAGCCTA+GGG | + | chr4.3:4222785-4222804 | MS.gene55830:CDS | 40.0% | |
| TTCTCCCATTCAAGCATATG+CGG | + | chr4.3:4224205-4224224 | MS.gene55830:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4.3:4223622-4223641 | MS.gene55830:intron | 40.0% | |
| TTGGACGAGTTAAATCGTTG+GGG | - | chr4.3:4222449-4222468 | None:intergenic | 40.0% | |
| TTGGTTTAGAGGGGAAGATT+TGG | + | chr4.3:4222679-4222698 | MS.gene55830:CDS | 40.0% | |
| TTGTTGAAAGGAATCAGCCT+AGG | + | chr4.3:4222784-4222803 | MS.gene55830:CDS | 40.0% | |
| TTTCATCAACATGGCACTCA+TGG | + | chr4.3:4222885-4222904 | MS.gene55830:CDS | 40.0% | |
| ! | AATATGGGAAAGCGTGAATG+GGG | + | chr4.3:4224673-4224692 | MS.gene55830:CDS | 40.0% |
| ! | ACTCATGGTGATGATCCTAA+TGG | + | chr4.3:4222900-4222919 | MS.gene55830:CDS | 40.0% |
| ! | AGGTAGGTATCTAAGGTTTG+TGG | + | chr4.3:4223346-4223365 | MS.gene55830:intron | 40.0% |
| ! | AGTTGATTCAACCTATGCTG+TGG | + | chr4.3:4223263-4223282 | MS.gene55830:intron | 40.0% |
| ! | CAAATATGGGAAAGCGTGAA+TGG | + | chr4.3:4224671-4224690 | MS.gene55830:CDS | 40.0% |
| ! | CAGCCAATTTTGCTGATATG+TGG | - | chr4.3:4224888-4224907 | None:intergenic | 40.0% |
| ! | CCACCGTAGTTTTCAATTGT+AGG | - | chr4.3:4225377-4225396 | None:intergenic | 40.0% |
| ! | CGGATTTAGCATTTTCTGAC+AGG | + | chr4.3:4224117-4224136 | MS.gene55830:CDS | 40.0% |
| ! | CTCATGGTGATGATCCTAAT+GGG | + | chr4.3:4222901-4222920 | MS.gene55830:CDS | 40.0% |
| ! | CTTTCCCATATTTGTTGCAG+AGG | - | chr4.3:4224665-4224684 | None:intergenic | 40.0% |
| ! | GAATTCTTTAGAAACGAGGG+TGG | + | chr4.3:4224748-4224767 | MS.gene55830:CDS | 40.0% |
| !! | AGCTTTTGGGAAGACAATGA+AGG | - | chr4.3:4224444-4224463 | None:intergenic | 40.0% |
| !! | ATTGCTGTGTTCTAGGAAAC+TGG | + | chr4.3:4224528-4224547 | MS.gene55830:intron | 40.0% |
| !! | GGGATTTTAGGGACACTTTT+AGG | + | chr4.3:4224237-4224256 | MS.gene55830:CDS | 40.0% |
| !! | GGTGAAATCTGTTGGTTTAG+AGG | + | chr4.3:4222668-4222687 | MS.gene55830:CDS | 40.0% |
| AAACCTTCAGGGCTACAATC+TGG | - | chr4.3:4225084-4225103 | None:intergenic | 45.0% | |
| AACCTTCAGGGCTACAATCT+GGG | - | chr4.3:4225083-4225102 | None:intergenic | 45.0% | |
| AAGCGGTATCCTACACAAGA+AGG | - | chr4.3:4224063-4224082 | None:intergenic | 45.0% | |
| AAGGTTGTCCCTTCTTGTGT+AGG | + | chr4.3:4224051-4224070 | MS.gene55830:intron | 45.0% | |
| ACACTTCCGGTGAAATCTGT+TGG | + | chr4.3:4222660-4222679 | MS.gene55830:CDS | 45.0% | |
| AGCGGTATCCTACACAAGAA+GGG | - | chr4.3:4224062-4224081 | None:intergenic | 45.0% | |
| AGGAAGAATATCACACCCGA+GGG | - | chr4.3:4224171-4224190 | None:intergenic | 45.0% | |
| ATAATCATTGTGTGCCACCG+TGG | - | chr4.3:4223134-4223153 | None:intergenic | 45.0% | |
| ATCTCATCAAGCACCCATAG+AGG | - | chr4.3:4224086-4224105 | None:intergenic | 45.0% | |
| CAAAATTGGCTGCCATTCAC+TGG | + | chr4.3:4224896-4224915 | MS.gene55830:CDS | 45.0% | |
| CATCCATCAGAGTTAACAGC+CGG | + | chr4.3:4224937-4224956 | MS.gene55830:CDS | 45.0% | |
| CTAGGGTTTATGATTGGCGA+GGG | + | chr4.3:4222802-4222821 | MS.gene55830:CDS | 45.0% | |
| CTTAAGCCTCAGACTCTAGA+AGG | + | chr4.3:4224032-4224051 | MS.gene55830:intron | 45.0% | |
| GCATGTCTGAGTACCATTCA+AGG | - | chr4.3:4224804-4224823 | None:intergenic | 45.0% | |
| GGAAGTGAGTGAAGGTGAAA+GGG | - | chr4.3:4222479-4222498 | None:intergenic | 45.0% | |
| GGATATCTTAGTTCACCACC+GGG | - | chr4.3:4224423-4224442 | None:intergenic | 45.0% | |
| GTCAAACTTCCAGTGCCAAA+TGG | - | chr4.3:4224709-4224728 | None:intergenic | 45.0% | |
| GTCTCACAAATCGGGTAAAC+CGG | - | chr4.3:4225305-4225324 | None:intergenic | 45.0% | |
| GTTACATCTCATGTACTCCC+CGG | + | chr4.3:4223488-4223507 | MS.gene55830:intron | 45.0% | |
| GTTTAGAGGGGAAGATTTGG+AGG | + | chr4.3:4222682-4222701 | MS.gene55830:CDS | 45.0% | |
| TAGGATACCGCTTCCTCTAT+GGG | + | chr4.3:4224070-4224089 | MS.gene55830:intron | 45.0% | |
| TCTTCTAAATCCTCCGATGC+CGG | + | chr4.3:4222540-4222559 | MS.gene55830:CDS | 45.0% | |
| TGAGATGAAGGAAGGTGAGA+AGG | - | chr4.3:4222424-4222443 | None:intergenic | 45.0% | |
| TGGACGAGTTAAATCGTTGG+GGG | - | chr4.3:4222448-4222467 | None:intergenic | 45.0% | |
| TGTGACATAGTGCCAGTGAA+TGG | - | chr4.3:4224911-4224930 | None:intergenic | 45.0% | |
| TTACCTTCAAGCCACAGCAT+AGG | - | chr4.3:4223277-4223296 | None:intergenic | 45.0% | |
| TTGAACCACGAAATTGGGAC+CGG | + | chr4.3:4225283-4225302 | MS.gene55830:CDS | 45.0% | |
| TTTGTGAGACGAATGTCTGC+TGG | + | chr4.3:4225315-4225334 | MS.gene55830:CDS | 45.0% | |
| ! | AAAAACCCAAACCCGATTCG+CGG | + | chr4.3:4222500-4222519 | MS.gene55830:CDS | 45.0% |
| ! | GACACTTTTAGGCCATACCT+TGG | + | chr4.3:4224248-4224267 | MS.gene55830:CDS | 45.0% |
| ! | GGCTGTTAACTCTGATGGAT+GGG | - | chr4.3:4224938-4224957 | None:intergenic | 45.0% |
| ! | GTTATGATGGCTTGCATGTG+TGG | + | chr4.3:4222837-4222856 | MS.gene55830:CDS | 45.0% |
| ! | TGTTGTGGTGGAGATTTGGT+GGG | + | chr4.3:4222758-4222777 | MS.gene55830:CDS | 45.0% |
| !! | AAGGTGTTGTGGTGGAGATT+TGG | + | chr4.3:4222754-4222773 | MS.gene55830:CDS | 45.0% |
| !! | ATTTTGCAGGGAGTGCAGAT+TGG | + | chr4.3:4224390-4224409 | MS.gene55830:intron | 45.0% |
| !! | CGAATCGGGTTTGGGTTTTT+CGG | - | chr4.3:4222500-4222519 | None:intergenic | 45.0% |
| !! | GGATGATGATGGATTCACTC+AGG | + | chr4.3:4225176-4225195 | MS.gene55830:CDS | 45.0% |
| !! | GGTTTTTCGGAAGTGAGTGA+AGG | - | chr4.3:4222487-4222506 | None:intergenic | 45.0% |
| !! | TTTGGTGGGGTGTTGTTGAA+AGG | + | chr4.3:4222772-4222791 | MS.gene55830:CDS | 45.0% |
| AACCCAGATTGTAGCCCTGA+AGG | + | chr4.3:4225078-4225097 | MS.gene55830:CDS | 50.0% | |
| AAGAAACCGCGAATCGGGTT+TGG | - | chr4.3:4222509-4222528 | None:intergenic | 50.0% | |
| AAGCGTGAATGGGGAAATGG+CGG | + | chr4.3:4224682-4224701 | MS.gene55830:CDS | 50.0% | |
| AAGGTGAAAGGGAGACGAGT+TGG | - | chr4.3:4222468-4222487 | None:intergenic | 50.0% | |
| AGAAACCGCGAATCGGGTTT+GGG | - | chr4.3:4222508-4222527 | None:intergenic | 50.0% | |
| ATCGTTGGGGGTTGAGATGA+AGG | - | chr4.3:4222436-4222455 | None:intergenic | 50.0% | |
| ATGGCTTCGTCTCGTGAACT+TGG | + | chr4.3:4224468-4224487 | MS.gene55830:CDS | 50.0% | |
| CAACCTATGCTGTGGCTTGA+AGG | + | chr4.3:4223271-4223290 | MS.gene55830:intron | 50.0% | |
| CAGGAAGAATATCACACCCG+AGG | - | chr4.3:4224172-4224191 | None:intergenic | 50.0% | |
| CCTAGGGTTTATGATTGGCG+AGG | + | chr4.3:4222801-4222820 | MS.gene55830:CDS | 50.0% | |
| CCTCGCCAATCATAAACCCT+AGG | - | chr4.3:4222804-4222823 | None:intergenic | 50.0% | |
| CGGAAGTGAGTGAAGGTGAA+AGG | - | chr4.3:4222480-4222499 | None:intergenic | 50.0% | |
| CGGCTGTTAACTCTGATGGA+TGG | - | chr4.3:4224939-4224958 | None:intergenic | 50.0% | |
| GATATTCTTCCTGTGCTGCG+TGG | + | chr4.3:4224179-4224198 | MS.gene55830:CDS | 50.0% | |
| GGCTCTTGGAACATGCCATA+TGG | + | chr4.3:4224769-4224788 | MS.gene55830:CDS | 50.0% | |
| GGTTCAATCTCGCCGGAAAA+CGG | + | chr4.3:4222564-4222583 | MS.gene55830:CDS | 50.0% | |
| GTAAACCGGTCCCAATTTCG+TGG | - | chr4.3:4225291-4225310 | None:intergenic | 50.0% | |
| GTAGGATACCGCTTCCTCTA+TGG | + | chr4.3:4224069-4224088 | MS.gene55830:intron | 50.0% | |
| TAGCCGGCTGTTAACTCTGA+TGG | - | chr4.3:4224943-4224962 | None:intergenic | 50.0% | |
| TCAAGCACCCATAGAGGAAG+CGG | - | chr4.3:4224080-4224099 | None:intergenic | 50.0% | |
| TCAGACATGCTGCTACTGCA+TGG | + | chr4.3:4224814-4224833 | MS.gene55830:CDS | 50.0% | |
| TTAGAAACGAGGGTGGCTCT+TGG | + | chr4.3:4224755-4224774 | MS.gene55830:CDS | 50.0% | |
| TTGGGGGTTGAGATGAAGGA+AGG | - | chr4.3:4222432-4222451 | None:intergenic | 50.0% | |
| ! | GGAAAGCGTGAATGGGGAAA+TGG | + | chr4.3:4224679-4224698 | MS.gene55830:CDS | 50.0% |
| ! | GTGTTGTGGTGGAGATTTGG+TGG | + | chr4.3:4222757-4222776 | MS.gene55830:CDS | 50.0% |
| !! | ACCGGAAGTGTCACAAACAC+CGG | - | chr4.3:4222651-4222670 | None:intergenic | 50.0% |
| !! | GACAACTTTTGCTGGCTGCT+AGG | + | chr4.3:4225109-4225128 | MS.gene55830:CDS | 50.0% |
| !! | GGACAACCTTCTAGAGTCTG+AGG | - | chr4.3:4224041-4224060 | None:intergenic | 50.0% |
| !! | GTTGTGGTGGAGATTTGGTG+GGG | + | chr4.3:4222759-4222778 | MS.gene55830:CDS | 50.0% |
| !! | TGCTGGTGTAGAAGGTGTTG+TGG | + | chr4.3:4222743-4222762 | MS.gene55830:CDS | 50.0% |
| !! | TGGTGTAGAAGGTGTTGTGG+TGG | + | chr4.3:4222746-4222765 | MS.gene55830:CDS | 50.0% |
| AACTACGGTGGCTGCAGAAG+TGG | + | chr4.3:4225386-4225405 | MS.gene55830:CDS | 55.0% | |
| AATGGCGGTCCATTTGGCAC+TGG | + | chr4.3:4224697-4224716 | MS.gene55830:CDS | 55.0% | |
| ACGATCTTTCTCCGCAGCGT+CGG | + | chr4.3:4222613-4222632 | MS.gene55830:CDS | 55.0% | |
| ACGGGAAGAAACCGCGAATC+GGG | - | chr4.3:4222514-4222533 | None:intergenic | 55.0% | |
| ACTACGGTGGCTGCAGAAGT+GGG | + | chr4.3:4225387-4225406 | MS.gene55830:CDS | 55.0% | |
| CTTGCTGCTGCTGGTGTAGA+AGG | + | chr4.3:4222735-4222754 | MS.gene55830:CDS | 55.0% | |
| GACGGGAAGAAACCGCGAAT+CGG | - | chr4.3:4222515-4222534 | None:intergenic | 55.0% | |
| GCCGGTGTTTGTGACACTTC+CGG | + | chr4.3:4222647-4222666 | MS.gene55830:CDS | 55.0% | |
| TCAATCTCGCCGGAAAACGG+CGG | + | chr4.3:4222567-4222586 | MS.gene55830:CDS | 55.0% | |
| TCTAAATCCTCCGATGCCGG+CGG | + | chr4.3:4222543-4222562 | MS.gene55830:CDS | 55.0% | |
| TGGGGAAATGGCGGTCCATT+TGG | + | chr4.3:4224691-4224710 | MS.gene55830:CDS | 55.0% | |
| ! | CAGGGAGTGCAGATTGGCAT+GGG | + | chr4.3:4224396-4224415 | MS.gene55830:intron | 55.0% |
| !! | GGAACTTCTCCGCCGTTTTC+CGG | - | chr4.3:4222579-4222598 | None:intergenic | 55.0% |
| !! | TTGAAAGCGCTTGCTGCTGC+TGG | + | chr4.3:4222726-4222745 | MS.gene55830:CDS | 55.0% |
| CGAGATTGAACCGCCGGCAT+CGG | - | chr4.3:4222556-4222575 | None:intergenic | 60.0% | |
| GACGCTGCGGAGAAAGATCG+TGG | - | chr4.3:4222614-4222633 | None:intergenic | 60.0% | |
| GTGCAGATTGGCATGGGTCC+CGG | + | chr4.3:4224402-4224421 | MS.gene55830:CDS | 60.0% | |
| TTCCGGCGAGATTGAACCGC+CGG | - | chr4.3:4222562-4222581 | None:intergenic | 60.0% | |
| ! | GCAGGGAGTGCAGATTGGCA+TGG | + | chr4.3:4224395-4224414 | MS.gene55830:intron | 60.0% |
| CAGATTGGCATGGGTCCCGG+TGG | + | chr4.3:4224405-4224424 | MS.gene55830:CDS | 65.0% | |
| GATCCACGTCTCCGACGCTG+CGG | - | chr4.3:4222627-4222646 | None:intergenic | 65.0% | |
| GGAGAACGTCCACGCAGCAC+AGG | - | chr4.3:4224191-4224210 | None:intergenic | 65.0% | |
| TGCCGGCGGTTCAATCTCGC+CGG | + | chr4.3:4222557-4222576 | MS.gene55830:CDS | 65.0% | |
| ! | GATTGAACCGCCGGCATCGG+AGG | - | chr4.3:4222553-4222572 | None:intergenic | 65.0% |
| GCGTCGGAGACGTGGATCGC+CGG | + | chr4.3:4222629-4222648 | MS.gene55830:CDS | 70.0% | |
| ! | TCTCCGCAGCGTCGGAGACG+TGG | + | chr4.3:4222621-4222640 | MS.gene55830:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4222402 | 4225440 | 4222402 | ID=MS.gene55830 |
| chr4.3 | mRNA | 4222402 | 4225440 | 4222402 | ID=MS.gene55830.t1;Parent=MS.gene55830 |
| chr4.3 | exon | 4222402 | 4222922 | 4222402 | ID=MS.gene55830.t1.exon1;Parent=MS.gene55830.t1 |
| chr4.3 | CDS | 4222402 | 4222922 | 4222402 | ID=cds.MS.gene55830.t1;Parent=MS.gene55830.t1 |
| chr4.3 | exon | 4224073 | 4224283 | 4224073 | ID=MS.gene55830.t1.exon2;Parent=MS.gene55830.t1 |
| chr4.3 | CDS | 4224073 | 4224283 | 4224073 | ID=cds.MS.gene55830.t1;Parent=MS.gene55830.t1 |
| chr4.3 | exon | 4224399 | 4224512 | 4224399 | ID=MS.gene55830.t1.exon3;Parent=MS.gene55830.t1 |
| chr4.3 | CDS | 4224399 | 4224512 | 4224399 | ID=cds.MS.gene55830.t1;Parent=MS.gene55830.t1 |
| chr4.3 | exon | 4224640 | 4225440 | 4224640 | ID=MS.gene55830.t1.exon4;Parent=MS.gene55830.t1 |
| chr4.3 | CDS | 4224640 | 4225440 | 4224640 | ID=cds.MS.gene55830.t1;Parent=MS.gene55830.t1 |
| Gene Sequence |
| Protein sequence |
