AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056449


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTTTCGTTAATCCTTC+TGG 0.253371 8.3:-32979380 None:intergenic
GGAGCATCTTGTATAAGTTT+TGG 0.254544 8.3:-32979359 None:intergenic
TTGTTGCCAATATGTAAATT+AGG 0.300400 8.3:+32979434 MS.gene056449:CDS
ACAAGGGATTTAGAAAATAA+AGG 0.317618 8.3:+32981077 MS.gene056449:CDS
CCCAGTGATTATAAGAAATT+AGG 0.323069 8.3:+32980133 MS.gene056449:CDS
ACCAATTTCAAACCTCAATA+TGG 0.325004 8.3:-32977412 None:intergenic
ATGATGAACAAGTACTGATT+TGG 0.334584 8.3:+32980988 MS.gene056449:CDS
AAGCTGAAGCAGATGAATTA+AGG 0.343513 8.3:+32979396 MS.gene056449:CDS
TGGTTACCTAATTTACATAT+TGG 0.355567 8.3:-32979440 None:intergenic
AGGTGTTCCTACCGTTGATA+TGG 0.377777 8.3:+32977376 MS.gene056449:CDS
ACCTAATTTCTTATAATCAC+TGG 0.380035 8.3:-32980134 None:intergenic
TGATTTGGAGGGGCAAAGAT+TGG 0.403995 8.3:+32981003 MS.gene056449:CDS
GAAATTAGGTGCCAAGCTTA+AGG 0.428388 8.3:+32980147 MS.gene056449:CDS
CACAGTATCCAGTGATGCTC+TGG 0.436749 8.3:+32979315 MS.gene056449:CDS
TGCAGTCAATCTTCACCAAA+TGG 0.453727 8.3:-32980099 None:intergenic
GCTGGCTTCCAGAGCATCAC+TGG 0.454686 8.3:-32979323 None:intergenic
GCAGATGAATTAAGGATGAA+AGG 0.461938 8.3:+32979404 MS.gene056449:CDS
CAGATGAATTAAGGATGAAA+GGG 0.465631 8.3:+32979405 MS.gene056449:CDS
TTTGATGGTGTAGGAAGGGA+TGG 0.476690 8.3:+32977281 None:intergenic
CTGCTGAAGCTACCATTACA+AGG 0.479834 8.3:+32981060 MS.gene056449:CDS
TTTGGATAAACAGGAGCAGC+TGG 0.481573 8.3:-32979341 None:intergenic
GAAGATTGACTGCAAGGGAT+TGG 0.488016 8.3:+32980108 MS.gene056449:CDS
CCTAATTTCTTATAATCACT+GGG 0.495817 8.3:-32980133 None:intergenic
GTTATCTAGTACCTTAAGCT+TGG 0.499508 8.3:-32980158 None:intergenic
GTCTGCAAAATTCGTTGTAA+AGG 0.499846 8.3:+32977356 MS.gene056449:CDS
TAATGTTTGCCGCCATATTG+AGG 0.502809 8.3:+32977400 MS.gene056449:CDS
CTGTCATGACAGGAGAAAGC+AGG 0.528302 8.3:+32979218 MS.gene056449:intron
AGTATACACAACACTTGTAA+AGG 0.531570 8.3:+32980051 MS.gene056449:CDS
CTTGTAATGGTAGCTTCAGC+AGG 0.533302 8.3:-32981059 None:intergenic
CTGGATACTGTGGACGAGTA+CGG 0.540010 8.3:-32979304 None:intergenic
ATGAACAAGTACTGATTTGG+AGG 0.541398 8.3:+32980991 MS.gene056449:CDS
TTTGGTGAAGATTGACTGCA+AGG 0.574054 8.3:+32980102 MS.gene056449:CDS
TGGATTAACGCATAACATGT+TGG 0.584391 8.3:+32977301 MS.gene056449:CDS
GGGAAAATAATTCATCGAGC+TGG 0.592781 8.3:+32979242 MS.gene056449:CDS
GGTAGTTGTAATTTCTGCCA+CGG 0.594943 8.3:-32979283 None:intergenic
AAAATAATTCATCGAGCTGG+CGG 0.598507 8.3:+32979245 MS.gene056449:CDS
TGGAGTTGATACATTCACAT+TGG 0.599029 8.3:+32977321 MS.gene056449:CDS
TGTCATGACAGGAGAAAGCA+GGG 0.606267 8.3:+32979219 MS.gene056449:intron
CTTATACAAGATGCTCCAGA+AGG 0.609269 8.3:+32979365 MS.gene056449:CDS
ACATTATCCATATCAACGGT+AGG 0.616575 8.3:-32977383 None:intergenic
TTGGTGAAGATTGACTGCAA+GGG 0.630294 8.3:+32980103 MS.gene056449:CDS
GCAAACATTATCCATATCAA+CGG 0.633398 8.3:-32977387 None:intergenic
TCATGACAGGAGAAAGCAGG+GGG 0.635654 8.3:+32979221 MS.gene056449:intron
TCGAAAGACAATAGCACACA+AGG 0.641203 8.3:-32980966 None:intergenic
TGAACAAGTACTGATTTGGA+GGG 0.645497 8.3:+32980992 MS.gene056449:CDS
GTAATGGTAGCTTCAGCAGG+AGG 0.648130 8.3:-32981056 None:intergenic
CAGAGCATCACTGGATACTG+TGG 0.656560 8.3:-32979314 None:intergenic
TGCTGAAGCTACCATTACAA+GGG 0.658377 8.3:+32981061 MS.gene056449:CDS
GAACAAGTACTGATTTGGAG+GGG 0.660461 8.3:+32980993 MS.gene056449:CDS
AATTTCAAACCTCAATATGG+CGG 0.689711 8.3:-32977409 None:intergenic
GTCATGACAGGAGAAAGCAG+GGG 0.723892 8.3:+32979220 MS.gene056449:intron
CATGACAGGAGAAAGCAGGG+GGG 0.794713 8.3:+32979222 MS.gene056449:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTAAATTTATTACATAA+AGG + chr8.3:32980404-32980423 MS.gene056449:intron 10.0%
!! ATTAAATTTATTACATAAAG+GGG + chr8.3:32980406-32980425 MS.gene056449:intron 10.0%
!! CATTAAATTTATTACATAAA+GGG + chr8.3:32980405-32980424 MS.gene056449:intron 10.0%
!!! ATTTTTATGACTAAAATTAT+TGG - chr8.3:32977927-32977946 None:intergenic 10.0%
!! AAATATTTATTCCTAATAGA+TGG + chr8.3:32978424-32978443 MS.gene056449:intron 15.0%
!! ATAATCAAAATCATGTAAAA+TGG + chr8.3:32979851-32979870 MS.gene056449:intron 15.0%
!! TAATCAAAATCATGTAAAAT+GGG + chr8.3:32979852-32979871 MS.gene056449:intron 15.0%
!! TATTATCTAGTAGTATTATA+CGG + chr8.3:32980905-32980924 MS.gene056449:intron 15.0%
!! TTAAATTTATTACATAAAGG+GGG + chr8.3:32980407-32980426 MS.gene056449:intron 15.0%
!!! ATATCAAAATTATTTAGTTC+AGG - chr8.3:32980235-32980254 None:intergenic 15.0%
!!! ATGGTCAAATTTTTTTATTT+GGG - chr8.3:32979693-32979712 None:intergenic 15.0%
!!! ATTTAGGTTTAGTATTTAAA+AGG + chr8.3:32979582-32979601 MS.gene056449:intron 15.0%
!!! TATGGTCAAATTTTTTTATT+TGG - chr8.3:32979694-32979713 None:intergenic 15.0%
!!! TTTAGGTTTAGTATTTAAAA+GGG + chr8.3:32979583-32979602 MS.gene056449:intron 15.0%
!! AACCTAAATATTTGAATCTA+AGG - chr8.3:32979571-32979590 None:intergenic 20.0%
!! ATAAAGTCTAAACAGAAAAT+GGG - chr8.3:32978996-32979015 None:intergenic 20.0%
!! TATAAAGTCTAAACAGAAAA+TGG - chr8.3:32978997-32979016 None:intergenic 20.0%
!! TATTTCACTATAAATTCTTC+TGG + chr8.3:32980593-32980612 MS.gene056449:intron 20.0%
!! TCATAGAAAATGATATATCT+TGG - chr8.3:32980628-32980647 None:intergenic 20.0%
!! TTAGGAATAAATATTTCAGA+CGG - chr8.3:32978420-32978439 None:intergenic 20.0%
!! TTCATAGAACATAATAAAAC+AGG + chr8.3:32980825-32980844 MS.gene056449:intron 20.0%
!! TTCCTTAGATTCAAATATTT+AGG + chr8.3:32979566-32979585 MS.gene056449:intron 20.0%
!!! AAATTTTTTTATTTGGGCAA+TGG - chr8.3:32979687-32979706 None:intergenic 20.0%
!!! AACATTATAAGAGTACTTTA+CGG - chr8.3:32979923-32979942 None:intergenic 20.0%
!!! ACAATTTGCATACTTTTTTT+AGG - chr8.3:32978652-32978671 None:intergenic 20.0%
!!! TAAAAAAAGTATGCAAATTG+TGG + chr8.3:32978651-32978670 MS.gene056449:intron 20.0%
!!! TTAGTCATTTTGTTATGATA+TGG - chr8.3:32977855-32977874 None:intergenic 20.0%
! AAAATGATATATCTTGGTAG+TGG - chr8.3:32980622-32980641 None:intergenic 25.0%
! AAATAATCATTCCTTGGTAA+GGG - chr8.3:32980578-32980597 None:intergenic 25.0%
! AATAATTGCAGCAATACTTA+AGG - chr8.3:32980889-32980908 None:intergenic 25.0%
! AATGTAGTTATGATGTAAGT+AGG - chr8.3:32978350-32978369 None:intergenic 25.0%
! ACAAGGGATTTAGAAAATAA+AGG + chr8.3:32981077-32981096 MS.gene056449:CDS 25.0%
! ACCTAATTTCTTATAATCAC+TGG - chr8.3:32980137-32980156 None:intergenic 25.0%
! ACTAAAATTATTGGACTTTC+CGG - chr8.3:32977918-32977937 None:intergenic 25.0%
! ACTACTTTGTAAAACTATGT+AGG + chr8.3:32977967-32977986 MS.gene056449:intron 25.0%
! AGAATTAATTCAAAGTGTAG+AGG + chr8.3:32980277-32980296 MS.gene056449:intron 25.0%
! AGAGATTATCAAAATCCAAA+GGG + chr8.3:32978701-32978720 MS.gene056449:intron 25.0%
! AGATAGAAAGAATTAAAGGA+TGG - chr8.3:32979044-32979063 None:intergenic 25.0%
! ATAGTGAAATAATCATTCCT+TGG - chr8.3:32980584-32980603 None:intergenic 25.0%
! ATCCTTTAATTCTTTCTATC+TGG + chr8.3:32979043-32979062 MS.gene056449:intron 25.0%
! ATTATAGTCAACATCCAATT+TGG + chr8.3:32978248-32978267 MS.gene056449:intron 25.0%
! ATTCCTAATAGATGGTTTAT+TGG + chr8.3:32978432-32978451 MS.gene056449:intron 25.0%
! CCTAATTTCTTATAATCACT+GGG - chr8.3:32980136-32980155 None:intergenic 25.0%
! CTCACAAGCTATAAATTATA+CGG - chr8.3:32978923-32978942 None:intergenic 25.0%
! GAATTAATTCAAAGTGTAGA+GGG + chr8.3:32980278-32980297 MS.gene056449:intron 25.0%
! GAGATCTAAAAGTTAATAGA+TGG - chr8.3:32979463-32979482 None:intergenic 25.0%
! GATAGAAAGAATTAAAGGAT+GGG - chr8.3:32979043-32979062 None:intergenic 25.0%
! TAAAGTCTAAACAGAAAATG+GGG - chr8.3:32978995-32979014 None:intergenic 25.0%
! TACATTGTCTTCAAGAAATA+AGG - chr8.3:32977707-32977726 None:intergenic 25.0%
! TACTACAACAAAATATGCTT+TGG + chr8.3:32980775-32980794 MS.gene056449:intron 25.0%
! TAGGAATAAATATTTCAGAC+GGG - chr8.3:32978419-32978438 None:intergenic 25.0%
! TCACAAGCTATAAATTATAC+GGG - chr8.3:32978922-32978941 None:intergenic 25.0%
! TCCTTTAATTCTTTCTATCT+GGG + chr8.3:32979044-32979063 MS.gene056449:intron 25.0%
! TGGTTACCTAATTTACATAT+TGG - chr8.3:32979443-32979462 None:intergenic 25.0%
! TTCATTAGTTAGGTAAATAG+TGG + chr8.3:32978873-32978892 MS.gene056449:intron 25.0%
! TTGATATTGCATTCTACTTT+GGG + chr8.3:32979941-32979960 MS.gene056449:intron 25.0%
! TTGTTGCCAATATGTAAATT+AGG + chr8.3:32979434-32979453 MS.gene056449:CDS 25.0%
!! ATTTTCTAAATCCCTTGTAA+TGG - chr8.3:32981075-32981094 None:intergenic 25.0%
!! TAAATAGTGGAAATCAGATT+GGG + chr8.3:32978886-32978905 MS.gene056449:intron 25.0%
!! TTTTCTATATTACAGCTCTA+GGG + chr8.3:32980729-32980748 MS.gene056449:intron 25.0%
!!! AGCTCTATCTTTTAATTTCA+AGG + chr8.3:32980550-32980569 MS.gene056449:intron 25.0%
!!! TATTCTCTTTAGGATAGTTT+CGG + chr8.3:32978141-32978160 MS.gene056449:intron 25.0%
!!! TCAAGTTGAATGTATTGTTA+GGG + chr8.3:32978807-32978826 MS.gene056449:intron 25.0%
!!! TGTATAAGTTTTGGATAAAC+AGG - chr8.3:32979353-32979372 None:intergenic 25.0%
!!! TTCAAGTTGAATGTATTGTT+AGG + chr8.3:32978806-32978825 MS.gene056449:intron 25.0%
AATGTTTATACTGTCATGAC+AGG + chr8.3:32979208-32979227 MS.gene056449:intron 30.0%
AATTTCAAACCTCAATATGG+CGG - chr8.3:32977412-32977431 None:intergenic 30.0%
ACCAATTTCAAACCTCAATA+TGG - chr8.3:32977415-32977434 None:intergenic 30.0%
ACCCAGATAGAAAGAATTAA+AGG - chr8.3:32979048-32979067 None:intergenic 30.0%
AGTATACACAACACTTGTAA+AGG + chr8.3:32980051-32980070 MS.gene056449:CDS 30.0%
AGTCCAATAAACCATCTATT+AGG - chr8.3:32978438-32978457 None:intergenic 30.0%
ATGTTTATATGAAGGATGGT+TGG - chr8.3:32977822-32977841 None:intergenic 30.0%
CAACGAAATCTATATCTGTT+AGG - chr8.3:32979092-32979111 None:intergenic 30.0%
CACTTGCATAATATCATTCT+TGG + chr8.3:32977481-32977500 MS.gene056449:intron 30.0%
CAGAATAAATGTACATGCTT+AGG + chr8.3:32980325-32980344 MS.gene056449:intron 30.0%
CAGATGAATTAAGGATGAAA+GGG + chr8.3:32979405-32979424 MS.gene056449:CDS 30.0%
CCCAGTGATTATAAGAAATT+AGG + chr8.3:32980133-32980152 MS.gene056449:CDS 30.0%
CCTACTTATGTCATATACTA+CGG - chr8.3:32978073-32978092 None:intergenic 30.0%
CGTAGTATATGACATAAGTA+GGG + chr8.3:32978071-32978090 MS.gene056449:intron 30.0%
GAAATAATCATTCCTTGGTA+AGG - chr8.3:32980579-32980598 None:intergenic 30.0%
GAACATCTCATTTATTTGTG+TGG + chr8.3:32980010-32980029 MS.gene056449:intron 30.0%
GAGAGATTATCAAAATCCAA+AGG + chr8.3:32978700-32978719 MS.gene056449:intron 30.0%
GCAAACATTATCCATATCAA+CGG - chr8.3:32977390-32977409 None:intergenic 30.0%
GGCAAAAAATGAACAAGAAA+CGG + chr8.3:32978678-32978697 MS.gene056449:intron 30.0%
GGTTTAGTATTTAAAAGGGT+TGG + chr8.3:32979587-32979606 MS.gene056449:intron 30.0%
GTAGTATATGACATAAGTAG+GGG + chr8.3:32978072-32978091 MS.gene056449:intron 30.0%
GTCAATTATCCATTTGTGAA+GGG - chr8.3:32977685-32977704 None:intergenic 30.0%
GTTGATATTGCATTCTACTT+TGG + chr8.3:32979940-32979959 MS.gene056449:intron 30.0%
TAGTATATGACATAAGTAGG+GGG + chr8.3:32978073-32978092 MS.gene056449:intron 30.0%
TCAAAGTGAAAGATTGGTAA+AGG - chr8.3:32978488-32978507 None:intergenic 30.0%
TGATATTGCATTCTACTTTG+GGG + chr8.3:32979942-32979961 MS.gene056449:intron 30.0%
TGATTATAGATTGTGCACAA+CGG + chr8.3:32977505-32977524 MS.gene056449:intron 30.0%
TGTCATCAACCATTATTTGA+TGG + chr8.3:32977890-32977909 MS.gene056449:intron 30.0%
TGTTAGGCATGTTTATATGA+AGG - chr8.3:32977830-32977849 None:intergenic 30.0%
! AAATAGTGGAAATCAGATTG+GGG + chr8.3:32978887-32978906 MS.gene056449:intron 30.0%
! ATGAATAGGATTTTCTGTAC+AGG - chr8.3:32977613-32977632 None:intergenic 30.0%
! ATTTATAGCTTGTGAGTGAA+AGG + chr8.3:32978927-32978946 MS.gene056449:intron 30.0%
! CTTTTCTATATTACAGCTCT+AGG + chr8.3:32980728-32980747 MS.gene056449:intron 30.0%
! GCAATTTGATCATTTTGCTT+TGG + chr8.3:32980931-32980950 MS.gene056449:intron 30.0%
! GTAAATAGTGGAAATCAGAT+TGG + chr8.3:32978885-32978904 MS.gene056449:intron 30.0%
! TGTTGTGTATACTCCATTTT+TGG - chr8.3:32980044-32980063 None:intergenic 30.0%
! TTATGCAAGTGTTGTTATGT+TGG - chr8.3:32977472-32977491 None:intergenic 30.0%
! TTGTTATGATATGGAGTGTT+AGG - chr8.3:32977846-32977865 None:intergenic 30.0%
!! AATTCGGATTTTAGGAAGAA+TGG - chr8.3:32978511-32978530 None:intergenic 30.0%
!! ATGATGAACAAGTACTGATT+TGG + chr8.3:32980988-32981007 MS.gene056449:CDS 30.0%
!! TAGTTTTACAAAGTAGTCGA+TGG - chr8.3:32977964-32977983 None:intergenic 30.0%
!!! AGATGCTTTTGACTTCTTAA+GGG + chr8.3:32979716-32979735 MS.gene056449:intron 30.0%
!!! GCATACTTTTTTTAGGCAAT+GGG - chr8.3:32978645-32978664 None:intergenic 30.0%
!!! TGCATACTTTTTTTAGGCAA+TGG - chr8.3:32978646-32978665 None:intergenic 30.0%
!!! TGTGCTAAGACTGTTTTTAA+TGG + chr8.3:32977572-32977591 MS.gene056449:intron 30.0%
AAAATAATTCATCGAGCTGG+CGG + chr8.3:32979245-32979264 MS.gene056449:CDS 35.0%
AAAGCCTGACAACAAAAAGT+AGG - chr8.3:32980712-32980731 None:intergenic 35.0%
AAAGGAAAGATCCATTGTGA+AGG + chr8.3:32978945-32978964 MS.gene056449:intron 35.0%
AAGCTGAAGCAGATGAATTA+AGG + chr8.3:32979396-32979415 MS.gene056449:CDS 35.0%
AAGTATGCAAATTGTGGTCT+TGG + chr8.3:32978657-32978676 MS.gene056449:intron 35.0%
AATGACTTCATATGCTGTCA+AGG - chr8.3:32978577-32978596 None:intergenic 35.0%
ACATTATCCATATCAACGGT+AGG - chr8.3:32977386-32977405 None:intergenic 35.0%
AGGCATGTTTATATGAAGGA+TGG - chr8.3:32977826-32977845 None:intergenic 35.0%
AGGTTCTTACGATGTGTATT+CGG + chr8.3:32978101-32978120 MS.gene056449:intron 35.0%
ATATACCAACCCTTCACAAA+TGG + chr8.3:32977673-32977692 MS.gene056449:intron 35.0%
ATTATCCATTTGTGAAGGGT+TGG - chr8.3:32977681-32977700 None:intergenic 35.0%
ATTGTGAAGGAAAAAACCCT+TGG + chr8.3:32978958-32978977 MS.gene056449:intron 35.0%
CAACAATCAACTTTCATGCA+CGG - chr8.3:32979158-32979177 None:intergenic 35.0%
CCGTAGTATATGACATAAGT+AGG + chr8.3:32978070-32978089 MS.gene056449:intron 35.0%
GAATGGTCAAAGTGAAAGAT+TGG - chr8.3:32978494-32978513 None:intergenic 35.0%
GATATTGCATTCTACTTTGG+GGG + chr8.3:32979943-32979962 MS.gene056449:intron 35.0%
GATTATAGATTGTGCACAAC+GGG + chr8.3:32977506-32977525 MS.gene056449:intron 35.0%
GCAATTAATAGCTGTCATTC+TGG + chr8.3:32979627-32979646 MS.gene056449:intron 35.0%
GCAGATGAATTAAGGATGAA+AGG + chr8.3:32979404-32979423 MS.gene056449:CDS 35.0%
GGACAAAGTATATTCTCTGT+AGG + chr8.3:32978162-32978181 MS.gene056449:intron 35.0%
GGACAGAGTATATTCTCTTT+AGG + chr8.3:32978131-32978150 MS.gene056449:intron 35.0%
GGTCAATTATCCATTTGTGA+AGG - chr8.3:32977686-32977705 None:intergenic 35.0%
GTAGTTATGATGTAAGTAGG+AGG - chr8.3:32978347-32978366 None:intergenic 35.0%
GTCTGCAAAATTCGTTGTAA+AGG + chr8.3:32977356-32977375 MS.gene056449:CDS 35.0%
GTTATCTAGTACCTTAAGCT+TGG - chr8.3:32980161-32980180 None:intergenic 35.0%
TAAAGTCAAGCAAAGACATC+TGG + chr8.3:32978839-32978858 MS.gene056449:intron 35.0%
TAAATGTACATGCTTAGGCT+TGG + chr8.3:32980330-32980349 MS.gene056449:intron 35.0%
TAGTCAACATCCAATTTGGA+AGG + chr8.3:32978252-32978271 MS.gene056449:intron 35.0%
TATCAAAATCCAAAGGGAAG+AGG + chr8.3:32978707-32978726 MS.gene056449:intron 35.0%
TATGATGTAAGTAGGAGGTT+AGG - chr8.3:32978342-32978361 None:intergenic 35.0%
TATTTGTGCTTGGGACAAAA+TGG - chr8.3:32978622-32978641 None:intergenic 35.0%
TGGATTAACGCATAACATGT+TGG + chr8.3:32977301-32977320 MS.gene056449:CDS 35.0%
TGTCTGTCAGTTCATTAGTT+AGG + chr8.3:32978863-32978882 MS.gene056449:intron 35.0%
TTGTGAAGGAAAAAACCCTT+GGG + chr8.3:32978959-32978978 MS.gene056449:intron 35.0%
TTTGAGTGCAGAATCTTAGT+TGG + chr8.3:32979821-32979840 MS.gene056449:intron 35.0%
! CTTTGGTTGTTTGAGACTAT+AGG - chr8.3:32977786-32977805 None:intergenic 35.0%
! GCCATATTGAGGTTTGAAAT+TGG + chr8.3:32977411-32977430 MS.gene056449:intron 35.0%
! GGTTCTGTAGTTGATTAGTT+TGG + chr8.3:32980428-32980447 MS.gene056449:intron 35.0%
! TTTGATCATTTTGCTTTGGC+AGG + chr8.3:32980935-32980954 MS.gene056449:intron 35.0%
!! ATGAACAAGTACTGATTTGG+AGG + chr8.3:32980991-32981010 MS.gene056449:CDS 35.0%
!! GAAGTCAAAAGCATCTCATA+TGG - chr8.3:32979712-32979731 None:intergenic 35.0%
!! GGAGCATCTTGTATAAGTTT+TGG - chr8.3:32979362-32979381 None:intergenic 35.0%
!! TGAACAAGTACTGATTTGGA+GGG + chr8.3:32980992-32981011 MS.gene056449:CDS 35.0%
!! TGGAGTTGATACATTCACAT+TGG + chr8.3:32977321-32977340 MS.gene056449:CDS 35.0%
!!! AAGGGTTTTTTCCTTCACAA+TGG - chr8.3:32978959-32978978 None:intergenic 35.0%
!!! GAGATGCTTTTGACTTCTTA+AGG + chr8.3:32979715-32979734 MS.gene056449:intron 35.0%
!!! GATGCTTTTGACTTCTTAAG+GGG + chr8.3:32979717-32979736 MS.gene056449:intron 35.0%
AAATCCAAAGGGAAGAGGAA+TGG + chr8.3:32978712-32978731 MS.gene056449:intron 40.0%
AACAGGACGTCTCTCAAAAT+GGG + chr8.3:32978748-32978767 MS.gene056449:intron 40.0%
AATCCCCAAATTCCACTTTG+AGG + chr8.3:32978771-32978790 MS.gene056449:intron 40.0%
AGCTAGCAAAGTTCATGTGA+AGG + chr8.3:32980455-32980474 MS.gene056449:intron 40.0%
AGTTGTGTATTTCGTCATGC+AGG + chr8.3:32977992-32978011 MS.gene056449:intron 40.0%
ATCCCCAAATTCCACTTTGA+GGG + chr8.3:32978772-32978791 MS.gene056449:intron 40.0%
CCTATTCATGCAAATGCATC+AGG + chr8.3:32977624-32977643 MS.gene056449:intron 40.0%
CCTGATGCATTTGCATGAAT+AGG - chr8.3:32977627-32977646 None:intergenic 40.0%
CTGGAGTATACCTTCCAAAT+TGG - chr8.3:32978265-32978284 None:intergenic 40.0%
CTTATACAAGATGCTCCAGA+AGG + chr8.3:32979365-32979384 MS.gene056449:CDS 40.0%
GAAATTAGGTGCCAAGCTTA+AGG + chr8.3:32980147-32980166 MS.gene056449:CDS 40.0%
GCAATGTTACAAATCCGACT+TGG - chr8.3:32978540-32978559 None:intergenic 40.0%
GCATCCTTTGAGCATAATGT+AGG - chr8.3:32980306-32980325 None:intergenic 40.0%
GCTAGCAAAGTTCATGTGAA+GGG + chr8.3:32980456-32980475 MS.gene056449:intron 40.0%
GGAACCTACATTATGCTCAA+AGG + chr8.3:32980299-32980318 MS.gene056449:intron 40.0%
GGGAAAATAATTCATCGAGC+TGG + chr8.3:32979242-32979261 MS.gene056449:CDS 40.0%
GGTAGTTGTAATTTCTGCCA+CGG - chr8.3:32979286-32979305 None:intergenic 40.0%
TAATGTTTGCCGCCATATTG+AGG + chr8.3:32977400-32977419 MS.gene056449:CDS 40.0%
TCAGCTTTCGTTAATCCTTC+TGG - chr8.3:32979383-32979402 None:intergenic 40.0%
TCGAAAGACAATAGCACACA+AGG - chr8.3:32980969-32980988 None:intergenic 40.0%
TCTTAAGGGGATTGTCAAGA+AGG + chr8.3:32979730-32979749 MS.gene056449:intron 40.0%
TGCAGTCAATCTTCACCAAA+TGG - chr8.3:32980102-32980121 None:intergenic 40.0%
TGCTGAAGCTACCATTACAA+GGG + chr8.3:32981061-32981080 MS.gene056449:CDS 40.0%
TGTAGGAGTTCATCAACTCT+GGG + chr8.3:32978179-32978198 MS.gene056449:intron 40.0%
TGTCAAGAAGGAACATCTCT+TGG + chr8.3:32979742-32979761 MS.gene056449:intron 40.0%
TGTGAAGGAAAAAACCCTTG+GGG + chr8.3:32978960-32978979 MS.gene056449:intron 40.0%
TGTGTTACAGTGTTGTACAC+TGG + chr8.3:32980663-32980682 MS.gene056449:intron 40.0%
TTCTGTACAGGATCATCAGA+AGG - chr8.3:32977601-32977620 None:intergenic 40.0%
TTGCCCTCAAAGTGGAATTT+GGG - chr8.3:32978778-32978797 None:intergenic 40.0%
TTGGATAGAGAACAAACGCT+TGG - chr8.3:32980379-32980398 None:intergenic 40.0%
TTGGTGAAGATTGACTGCAA+GGG + chr8.3:32980103-32980122 MS.gene056449:CDS 40.0%
TTTGCCCTCAAAGTGGAATT+TGG - chr8.3:32978779-32978798 None:intergenic 40.0%
TTTGGTGAAGATTGACTGCA+AGG + chr8.3:32980102-32980121 MS.gene056449:CDS 40.0%
! ATTTCAAGGTACCCTTACCA+AGG + chr8.3:32980564-32980583 MS.gene056449:intron 40.0%
! CAACCATTATTTGATGGCAC+CGG + chr8.3:32977896-32977915 MS.gene056449:intron 40.0%
! CATTTTGCTTTGGCAGGATT+TGG + chr8.3:32980941-32980960 MS.gene056449:intron 40.0%
! GATGTCAGAGATGCTTTTGA+AGG + chr8.3:32980073-32980092 MS.gene056449:CDS 40.0%
! GGAAGTATAACTCTGCTATG+AGG - chr8.3:32978390-32978409 None:intergenic 40.0%
! GGACTCTGAATTCGGATTTT+AGG - chr8.3:32978519-32978538 None:intergenic 40.0%
! GGTGTAGTTTATCTTTTCCG+TGG + chr8.3:32979266-32979285 MS.gene056449:CDS 40.0%
! TCATGTGAAGGGTATGATTG+AGG + chr8.3:32980467-32980486 MS.gene056449:intron 40.0%
! TTTGGAAGGTATACTCCAGA+AGG + chr8.3:32978266-32978285 MS.gene056449:intron 40.0%
!! GAACAAGTACTGATTTGGAG+GGG + chr8.3:32980993-32981012 MS.gene056449:CDS 40.0%
!! TCTATATTACAGCTCTAGGG+AGG + chr8.3:32980732-32980751 MS.gene056449:intron 40.0%
!! TGCTTTTGAAGGAAGCCATT+TGG + chr8.3:32980084-32980103 MS.gene056449:CDS 40.0%
!! TTTCCGGTGCCATCAAATAA+TGG - chr8.3:32977902-32977921 None:intergenic 40.0%
!!! TCAGCCTACTTTTTGTTGTC+AGG + chr8.3:32980705-32980724 MS.gene056449:intron 40.0%
AAGCAGAGATCCAGAATGAG+AGG - chr8.3:32977734-32977753 None:intergenic 45.0%
AATATTTCAGACGGGCGTGT+AGG - chr8.3:32978411-32978430 None:intergenic 45.0%
AATGTAACCCCCTCTCATTC+TGG + chr8.3:32977721-32977740 MS.gene056449:intron 45.0%
AGCAGAGATCCAGAATGAGA+GGG - chr8.3:32977733-32977752 None:intergenic 45.0%
AGGAGGTTAGGAAGTAGTTG+TGG - chr8.3:32978330-32978349 None:intergenic 45.0%
AGGCAATGGGTATTTGTGCT+TGG - chr8.3:32978632-32978651 None:intergenic 45.0%
AGGTGTTCCTACCGTTGATA+TGG + chr8.3:32977376-32977395 MS.gene056449:CDS 45.0%
AGGTTAGGAAGTAGTTGTGG+TGG - chr8.3:32978327-32978346 None:intergenic 45.0%
AGTGGAAATCAGATTGGGGA+GGG + chr8.3:32978891-32978910 MS.gene056449:intron 45.0%
ATGGGGAATAAAATCCCCCA+AGG - chr8.3:32978978-32978997 None:intergenic 45.0%
ATGGTTGGGAGATGATCAAC+AGG + chr8.3:32978731-32978750 MS.gene056449:intron 45.0%
CAAAGGGAAGAGGAATGGTT+GGG + chr8.3:32978717-32978736 MS.gene056449:intron 45.0%
CAACAGGACGTCTCTCAAAA+TGG + chr8.3:32978747-32978766 MS.gene056449:intron 45.0%
CACTGGCACGATAATTAGTC+TGG + chr8.3:32980680-32980699 MS.gene056449:intron 45.0%
CATCAGGTTCCATCTTCGTA+AGG + chr8.3:32977640-32977659 MS.gene056449:intron 45.0%
CGATGTGTATTCGGTAGTTC+TGG + chr8.3:32978110-32978129 MS.gene056449:intron 45.0%
CTGCTATGAGGTAGTGACAT+TGG - chr8.3:32978378-32978397 None:intergenic 45.0%
CTGCTGAAGCTACCATTACA+AGG + chr8.3:32981060-32981079 MS.gene056449:CDS 45.0%
CTGTAGGAGTTCATCAACTC+TGG + chr8.3:32978178-32978197 MS.gene056449:intron 45.0%
CTTGTAATGGTAGCTTCAGC+AGG - chr8.3:32981062-32981081 None:intergenic 45.0%
GAAGATTGACTGCAAGGGAT+TGG + chr8.3:32980108-32980127 MS.gene056449:CDS 45.0%
GAGGAAAAACTGGAGCTTGA+GGG - chr8.3:32981040-32981059 None:intergenic 45.0%
GGCAATGGGTATTTGTGCTT+GGG - chr8.3:32978631-32978650 None:intergenic 45.0%
GGTTAGGAAGTAGTTGTGGT+GGG - chr8.3:32978326-32978345 None:intergenic 45.0%
GTGAAGGAAAAAACCCTTGG+GGG + chr8.3:32978961-32978980 MS.gene056449:intron 45.0%
GTTACCAAGCCTTACGAAGA+TGG - chr8.3:32977652-32977671 None:intergenic 45.0%
TAGTGGAAATCAGATTGGGG+AGG + chr8.3:32978890-32978909 MS.gene056449:intron 45.0%
TCCAGAAGGATGTACAGCAT+AGG + chr8.3:32978280-32978299 MS.gene056449:intron 45.0%
TCCGAATTCAGAGTCCAAGT+CGG + chr8.3:32978523-32978542 MS.gene056449:intron 45.0%
TCCTATGCTGTACATCCTTC+TGG - chr8.3:32978284-32978303 None:intergenic 45.0%
TCTGCACTCAAATCTTCTGC+AGG - chr8.3:32979813-32979832 None:intergenic 45.0%
TGCCCTCAAAGTGGAATTTG+GGG - chr8.3:32978777-32978796 None:intergenic 45.0%
TGGGGAATAAAATCCCCCAA+GGG - chr8.3:32978977-32978996 None:intergenic 45.0%
TGTCATGACAGGAGAAAGCA+GGG + chr8.3:32979219-32979238 MS.gene056449:intron 45.0%
TTTGGATAAACAGGAGCAGC+TGG - chr8.3:32979344-32979363 None:intergenic 45.0%
! ATTCCACTTTGAGGGCAAAG+TGG + chr8.3:32978780-32978799 MS.gene056449:intron 45.0%
! TGATTTGGAGGGGCAAAGAT+TGG + chr8.3:32981003-32981022 MS.gene056449:CDS 45.0%
! TTGGTGTCTAGTTCGAGCTT+TGG - chr8.3:32977803-32977822 None:intergenic 45.0%
!! ATATTACAGCTCTAGGGAGG+AGG + chr8.3:32980735-32980754 MS.gene056449:intron 45.0%
!! TATTACAGCTCTAGGGAGGA+GGG + chr8.3:32980736-32980755 MS.gene056449:intron 45.0%
!! TCCGACTTGGACTCTGAATT+CGG - chr8.3:32978527-32978546 None:intergenic 45.0%
!! TGTGGTGTTGCAGCCAAAAA+TGG + chr8.3:32980028-32980047 MS.gene056449:intron 45.0%
!! AATAAATTTAATGTTTATAT+TGG - chr8.3:32980398-32980417 None:intergenic 5.0%
CACAGTATCCAGTGATGCTC+TGG + chr8.3:32979315-32979334 MS.gene056449:CDS 50.0%
CAGAGATCCAGAATGAGAGG+GGG - chr8.3:32977731-32977750 None:intergenic 50.0%
CCAAAGGGAAGAGGAATGGT+TGG + chr8.3:32978716-32978735 MS.gene056449:intron 50.0%
CCAACCATTCCTCTTCCCTT+TGG - chr8.3:32978719-32978738 None:intergenic 50.0%
CTGGATACTGTGGACGAGTA+CGG - chr8.3:32979307-32979326 None:intergenic 50.0%
CTGTCATGACAGGAGAAAGC+AGG + chr8.3:32979218-32979237 MS.gene056449:intron 50.0%
CTTGCGACTGCAATCACTCT+AGG - chr8.3:32979533-32979552 None:intergenic 50.0%
GACATAAGTAGGGGGCTAAG+AGG + chr8.3:32978081-32978100 MS.gene056449:intron 50.0%
GCAGAGATCCAGAATGAGAG+GGG - chr8.3:32977732-32977751 None:intergenic 50.0%
GCTTCAGCAGGAGGAAAAAC+TGG - chr8.3:32981050-32981069 None:intergenic 50.0%
GGAGGAAAAACTGGAGCTTG+AGG - chr8.3:32981041-32981060 None:intergenic 50.0%
GGTTCCATCTTCGTAAGGCT+TGG + chr8.3:32977645-32977664 MS.gene056449:intron 50.0%
GTAATGGTAGCTTCAGCAGG+AGG - chr8.3:32981059-32981078 None:intergenic 50.0%
GTCATGACAGGAGAAAGCAG+GGG + chr8.3:32979220-32979239 MS.gene056449:intron 50.0%
GTGATTGCAGTCGCAAGATG+AGG + chr8.3:32979536-32979555 MS.gene056449:intron 50.0%
TCATGACAGGAGAAAGCAGG+GGG + chr8.3:32979221-32979240 MS.gene056449:intron 50.0%
! CAGAGCATCACTGGATACTG+TGG - chr8.3:32979317-32979336 None:intergenic 50.0%
CATGACAGGAGAAAGCAGGG+GGG + chr8.3:32979222-32979241 MS.gene056449:intron 55.0%
GCTCCACTTTGCCCTCAAAG+TGG - chr8.3:32978786-32978805 None:intergenic 55.0%
! GCTGGCTTCCAGAGCATCAC+TGG - chr8.3:32979326-32979345 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 32977294 32981098 32977294 ID=MS.gene056449
chr8.3 mRNA 32977294 32981098 32977294 ID=MS.gene056449.t1;Parent=MS.gene056449
chr8.3 exon 32977294 32977421 32977294 ID=MS.gene056449.t1.exon1;Parent=MS.gene056449.t1
chr8.3 CDS 32977294 32977421 32977294 ID=cds.MS.gene056449.t1;Parent=MS.gene056449.t1
chr8.3 exon 32979230 32979455 32979230 ID=MS.gene056449.t1.exon2;Parent=MS.gene056449.t1
chr8.3 CDS 32979230 32979455 32979230 ID=cds.MS.gene056449.t1;Parent=MS.gene056449.t1
chr8.3 exon 32980041 32980168 32980041 ID=MS.gene056449.t1.exon3;Parent=MS.gene056449.t1
chr8.3 CDS 32980041 32980168 32980041 ID=cds.MS.gene056449.t1;Parent=MS.gene056449.t1
chr8.3 exon 32980957 32981098 32980957 ID=MS.gene056449.t1.exon4;Parent=MS.gene056449.t1
chr8.3 CDS 32980957 32981098 32980957 ID=cds.MS.gene056449.t1;Parent=MS.gene056449.t1
Gene Sequence

>MS.gene056449

GAAGGGATGGATTAACGCATAACATGTTGGAGTTGATACATTCACATTGGAAGCGACGTCGCGTCTGCAAAATTCGTTGTAAAGGTGTTCCTACCGTTGATATGGATAATGTTTGCCGCCATATTGAGGTTTGAAATTGGTTCATAATCTTGTTCACTTTGTTGTCATTTTGATACCAACATAACAACACTTGCATAATATCATTCTTGGCTGATTATAGATTGTGCACAACGGGTTATGATCTTAAAATGAAAATAATATTATGTCAACTAGTAGTTTGTGCTAAGACTGTTTTTAATGGATTCCTTCTGATGATCCTGTACAGAAAATCCTATTCATGCAAATGCATCAGGTTCCATCTTCGTAAGGCTTGGTAACAATATACCAACCCTTCACAAATGGATAATTGACCTTATTTCTTGAAGACAATGTAACCCCCTCTCATTCTGGATCTCTGCTTGAGAAAGACATTATTACTTCACTCAAAATCCTATAGTCTCAAACAACCAAAGCTCGAACTAGACACCAACCATCCTTCATATAAACATGCCTAACACTCCATATCATAACAAAATGACTAACATCTATAAAATTACTGTCATCAACCATTATTTGATGGCACCGGAAAGTCCAATAATTTTAGTCATAAAAATGACTAAAATTACTGCCATCGACTACTTTGTAAAACTATGTAGGATAGTTGTGTATTTCGTCATGCAGGACAGAAATGTAATAGTTATGTATATAATCATGTCGAACAGTTTATAGCAATTTATCCGTAGTATATGACATAAGTAGGGGGCTAAGAGGTTCTTACGATGTGTATTCGGTAGTTCTGGACAGAGTATATTCTCTTTAGGATAGTTTCGGACAAAGTATATTCTCTGTAGGAGTTCATCAACTCTGGGACAGCATCTTTTCTGTAGTTTTTGTAATTTATATGTATAACTATAAATTATAGTCAACATCCAATTTGGAAGGTATACTCCAGAAGGATGTACAGCATAGGATGTACAACTTTGTCAAACACCCACCACAACTACTTCCTAACCTCCTACTTACATCATAACTACATTACTGTCCAATGTCACTACCTCATAGCAGAGTTATACTTCCTACACGCCCGTCTGAAATATTTATTCCTAATAGATGGTTTATTGGACTTTCAAGTCTCGTCAGAGTACATGTCAGCCTTTACCAATCTTTCACTTTGACCATTCTTCCTAAAATCCGAATTCAGAGTCCAAGTCGGATTTGTAACATTGCACAACATTCACAAACCTTGACAGCATATGAAGTCATTTATTTAGATTTGAAAATGACAACCATTTTGTCCCAAGCACAAATACCCATTGCCTAAAAAAAGTATGCAAATTGTGGTCTTGGCAAAAAATGAACAAGAAACGGAGAGATTATCAAAATCCAAAGGGAAGAGGAATGGTTGGGAGATGATCAACAGGACGTCTCTCAAAATGGGAATCCCCAAATTCCACTTTGAGGGCAAAGTGGAGCTTCAAGTTGAATGTATTGTTAGGGTATCTCATTTAAAGTCAAGCAAAGACATCTGGTTGTCTGTCAGTTCATTAGTTAGGTAAATAGTGGAAATCAGATTGGGGAGGGATCAACCCGTATAATTTATAGCTTGTGAGTGAAAGGAAAGATCCATTGTGAAGGAAAAAACCCTTGGGGGATTTTATTCCCCATTTTCTGTTTAGACTTTATAGTTCATTGTTCAATAGTACTACTCCCATCCTTTAATTCTTTCTATCTGGGTTTCAATCTCATTTTGTGAGTTCCTAACAGATATAGATTTCGTTGATGCTTTTACTTTTCTTTTTCTTCTCTTGAATCAATCACTGAGCCGTGCATGAAAGTTGATTGTTGCATATGATCACTTTTTTTGCTTTGAAGTTAAATGTTTATACTGTCATGACAGGAGAAAGCAGGGGGGAAAATAATTCATCGAGCTGGCGGTGTAGTTTATCTTTTCCGTGGCAGAAATTACAACTACCGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTATCCAAAACTTATACAAGATGCTCCAGAAGGATTAACGAAAGCTGAAGCAGATGAATTAAGGATGAAAGGGAAGAGCTTGTTGCCAATATGTAAATTAGGTAACCATCTATTAACTTTTAGATCTCTTTCTAATTTCGAGACTACACACTGCATGAAGAAATTTGAAAATTTGCCTAGAGTGATTGCAGTCGCAAGATGAGGCTAGAGTTTCCTTAGATTCAAATATTTAGGTTTAGTATTTAAAAGGGTTGGATGAATTACAATTTGATGCAATTAATAGCTGTCATTCTGGTAATATACATGTCATTAGACTTAAGTATCAAGCACCATTGCCCAAATAAAAAAATTTGACCATATGAGATGCTTTTGACTTCTTAAGGGGATTGTCAAGAAGGAACATCTCTTGGTTAGTAGAGTAAGATATTGAAAATAGAATATTCAATGCAAGTAAACCTGCAGAAGATTTGAGTGCAGAATCTTAGTTGGAAGAAAGATAATCAAAATCATGTAAAATGGGCTTGTCATTATGTTTTTCAATTTTTTATTGATCTGCATATTTATTCCGTAAAGTACTCTTATAATGTTGATATTGCATTCTACTTTGGGGGTAATCACATTTTTTTTTTTTTTTGTTGCTTTTATTTCTTAATTTGAACATCTCATTTATTTGTGTGGTGTTGCAGCCAAAAATGGAGTATACACAACACTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAGCCATTTGGTGAAGATTGACTGCAAGGGATTGGATCCCAGTGATTATAAGAAATTAGGTGCCAAGCTTAAGGTACTAGATAACTAGCTTTCTTCGTCTTCTTTTACATTGCTTCTTTTATCTTTACTCTTTTTGCCTGAACTAAATAATTTTGATATCTGTACTCTGTATTAAGTTAATAGAATTAATTCAAAGTGTAGAGGGAACCTACATTATGCTCAAAGGATGCAGAATAAATGTACATGCTTAGGCTTGGCAGCTGAAAACATTATGTTTAATCCAAGCGTTTGTTCTCTATCCAATATAAACATTAAATTTATTACATAAAGGGGGTTCTGTAGTTGATTAGTTTGGTACAAGCTAGCAAAGTTCATGTGAAGGGTATGATTGAGGATTCATCAGTTTGATTTTTTTCATGTTTTCATCTCTCTGATTATGCTAAAAGTGATCATTAGCTCTATCTTTTAATTTCAAGGTACCCTTACCAAGGAATGATTATTTCACTATAAATTCTTCTGGTTTCCACTACCAAGATATATCATTTTCTATGAGTGTTGAGACAACATTGTGTTACAGTGTTGTACACTGGCACGATAATTAGTCTGGTATCAGCCTACTTTTTGTTGTCAGGCTTTTCTATATTACAGCTCTAGGGAGGAGGGACTTGTTACAATTTATTACTACAACAAAATATGCTTTGGATTTTGTAATTGATATGTCTATATTGTTTCATAGAACATAATAAAACAGGTCATGTGCAGTGTATAGTAGCATGCATCGTGTTTGTATCCTTAAGTATTGCTGCAATTATTATCTAGTAGTATTATACGGCATGCAATTTGATCATTTTGCTTTGGCAGGATTTGGTTCCTTGTGTGCTATTGTCTTTCGATGATGAACAAGTACTGATTTGGAGGGGCAAAGATTGGAAATCAATGTACCCTCAAGCTCCAGTTTTTCCTCCTGCTGAAGCTACCATTACAAGGGATTTAGAAAATAAAG

Protein sequence

>MS.gene056449.t1

EGMDURITCWSUYIHIGSDVASAKFVVKVFLPLIWIMFAAILRRKQGGKUFIELAVUFIFSVAEITTTVLVHSIQUCSGSQLLLFIQNLYKMLQKDURKLKQMNUGUKGRACCQYVNUPKMEYTQHLURMSEMLLKEAIWURLTARDWIPVIIRNUVPSLRIWFLVCYCLSMMNKYUFGGAKIGNQCTLKLQFFLLLKLPLQGIUKIK