AlfalfaGEDB | MS.gene053285

M. sativa cultivar XinJiangDaYe / MS.gene053285

KEGG: -
GO: GO:0005575 GO:0016020 GO:0110165
PFAM: PF02325.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053285.t1	XP_013454503.1	95.7	94	4	0	1	94	121	214	8.60E-43	182.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053285.t1	Q9SUE0	86.2	87	12	0	4	90	127	213	2.9e-39	162.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053285.t1	A0A072UFK1	95.7	94	4	0	1	94	121	214	6.2e-43	182.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene053285	0.850205	1.97E-60	-1.69E-46
MS.gene049285	MS.gene053285	0.823914	1.07E-53	-1.69E-46
MS.gene050163	MS.gene053285	0.848597	5.54E-60	-1.69E-46
MS.gene050165	MS.gene053285	0.846632	1.92E-59	-1.69E-46
MS.gene050333	MS.gene053285	0.846478	2.12E-59	-1.69E-46
MS.gene050444	MS.gene053285	0.817311	3.52E-52	-1.69E-46
MS.gene050504	MS.gene053285	0.847388	1.19E-59	-1.69E-46
MS.gene050518	MS.gene053285	0.800234	1.59E-48	-1.69E-46
MS.gene050612	MS.gene053285	0.82815	1.06E-54	-1.69E-46
MS.gene050876	MS.gene053285	0.815153	1.07E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053285.t1	MTR_4g005520	95.745	94	4	0	1	94	121	214	1.64e-60	183
MS.gene053285.t1	MTR_3g105100	47.368	76	35	3	12	86	120	191	4.60e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053285.t1	AT4G27990	85.227	88	13	0	4	91	127	214	1.25e-51	161
MS.gene053285.t1	AT3G07430	83.908	87	14	0	4	90	141	227	9.49e-51	159
MS.gene053285.t1	AT5G21920	50.000	76	33	3	12	86	133	204	1.41e-14	66.6

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Find 25 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCAAAAGCAAGAAG+AGG	0.574512	4.3:-88913442	None:intergenic
AAATGGTTGGATATTTACAG+TGG	0.642279	4.3:+88913271	MS.gene053285:CDS
ACAACCATTGTCTGCAATTA+GGG	0.307081	4.3:+88913348	MS.gene053285:CDS
ACAGTGGTGTGTTGTTGGTT+AGG	0.327645	4.3:+88913287	MS.gene053285:CDS
AGATCCCTAATTGCAGACAA+TGG	0.662621	4.3:-88913352	None:intergenic
ATCCTTATCTAAGTTTGTTT+AGG	0.329465	4.3:+88913380	MS.gene053285:CDS
CACGCCGTTGACGGTTGTAG+CGG	0.575214	4.3:+88913237	MS.gene053285:CDS
CAGTGGTGTGTTGTTGGTTA+GGG	0.363509	4.3:+88913288	MS.gene053285:CDS
CCCGCCGCTACAACCGTCAA+CGG	0.573983	4.3:-88913241	None:intergenic
CCGTTGACGGTTGTAGCGGC+GGG	0.441420	4.3:+88913241	MS.gene053285:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGTTGGATATTTACAG+TGG	+	chr4.3:88913271-88913290	MS.gene053285:CDS	30.0%
AAAACAGCAAAAGCAAGAAG+AGG	-	chr4.3:88913445-88913464	None:intergenic	35.0%
ACAACCATTGTCTGCAATTA+GGG	+	chr4.3:88913348-88913367	MS.gene053285:CDS	35.0%
TATTTACAGTGGTGTGTTGT+TGG	+	chr4.3:88913282-88913301	MS.gene053285:CDS	35.0%
AGATCCCTAATTGCAGACAA+TGG	-	chr4.3:88913355-88913374	None:intergenic	40.0%
GACAACCATTGTCTGCAATT+AGG	+	chr4.3:88913347-88913366	MS.gene053285:CDS	40.0%
TGTCTTTCCCATGGAATGTT+GGG	-	chr4.3:88913331-88913350	None:intergenic	40.0%
TTGGTTTCCCAACATTCCAT+GGG	+	chr4.3:88913321-88913340	MS.gene053285:CDS	40.0%
TTGTCTTTCCCATGGAATGT+TGG	-	chr4.3:88913332-88913351	None:intergenic	40.0%
GACAATGGTTGTCTTTCCCA+TGG	-	chr4.3:88913340-88913359	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	88913217	88913501	88913217	ID=MS.gene053285
chr4.3	mRNA	88913217	88913501	88913217	ID=MS.gene053285.t1;Parent=MS.gene053285
chr4.3	exon	88913217	88913501	88913217	ID=MS.gene053285.t1.exon1;Parent=MS.gene053285.t1
chr4.3	CDS	88913217	88913501	88913217	ID=cds.MS.gene053285.t1;Parent=MS.gene053285.t1

Gene Sequence	>MS.gene053285 ACTAGGACGGGGACGGTGAACACGCCGTTGACGGTTGTAGCGGCGGGGTTGAAGAAATGGTTGGATATTTACAGTGGTGTGTTGTTGGTTAGGGTTTTGTTGAGTTGGTTTCCCAACATTCCATGGGAAAGACAACCATTGTCTGCAATTAGGGATCTTTGTGATCCTTATCTAAGTTTGTTTAGGAATGTTGTTCCACCTGTTTTTGATACTCTTGATATTAGTCCTCTTCTTGCTTTTGCTGTTTTGGGTACTCTTGCTGGTCTCCTCACTGTTCCTGTTTAG
Protein sequence	>MS.gene053285.t1 TRTGTVNTPLTVVAAGLKKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLSLFRNVVPPVFDTLDISPLLAFAVLGTLAGLLTVPV