Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56670.t1 | XP_003616591.1 | 95 | 424 | 13 | 1 | 1 | 424 | 1 | 416 | 1.70E-178 | 635.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56670.t1 | G7KGW7 | 95.0 | 424 | 13 | 1 | 1 | 424 | 1 | 416 | 1.2e-178 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051678 | MS.gene56670 | 0.819519 | 1.11E-52 | -1.69E-46 |
| MS.gene052224 | MS.gene56670 | -0.809529 | 1.81E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene56670 | 0.812553 | 4.00E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene56670 | 0.833513 | 5.11E-56 | -1.69E-46 |
| MS.gene05548 | MS.gene56670 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene56670 | 0.814671 | 1.37E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene56670 | 0.831727 | 1.42E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56670.t1 | MTR_5g082130 | 94.575 | 424 | 15 | 1 | 1 | 424 | 1 | 416 | 0.0 | 790 |
| MS.gene56670.t1 | MTR_3g463450 | 40.464 | 388 | 162 | 6 | 85 | 418 | 136 | 508 | 1.05e-82 | 263 |
| MS.gene56670.t1 | MTR_2g103795 | 39.252 | 107 | 65 | 0 | 304 | 410 | 137 | 243 | 5.07e-17 | 81.3 |
| MS.gene56670.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 231 | 404 | 174 | 347 | 3.27e-16 | 80.1 |
| MS.gene56670.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 231 | 404 | 151 | 324 | 5.49e-16 | 79.3 |
| MS.gene56670.t1 | MTR_7g099260 | 35.849 | 106 | 66 | 1 | 309 | 414 | 240 | 343 | 7.97e-15 | 75.9 |
| MS.gene56670.t1 | MTR_4g114690 | 37.736 | 106 | 66 | 0 | 297 | 402 | 153 | 258 | 8.34e-14 | 72.0 |
| MS.gene56670.t1 | MTR_4g010250 | 35.514 | 107 | 67 | 2 | 304 | 409 | 122 | 227 | 1.74e-13 | 70.5 |
| MS.gene56670.t1 | MTR_2g103795 | 39.080 | 87 | 53 | 0 | 304 | 390 | 137 | 223 | 2.77e-11 | 63.5 |
| MS.gene56670.t1 | MTR_1g073230 | 35.417 | 96 | 62 | 0 | 309 | 404 | 276 | 371 | 8.24e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56670.t1 | AT3G47080 | 39.084 | 371 | 177 | 8 | 78 | 418 | 158 | 509 | 5.97e-77 | 248 |
| MS.gene56670.t1 | AT1G07280 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.29e-44 | 163 |
| MS.gene56670.t1 | AT1G07280 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 5.40e-41 | 153 |
| MS.gene56670.t1 | AT1G07280 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.29e-44 | 163 |
| MS.gene56670.t1 | AT1G07280 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 5.40e-41 | 153 |
| MS.gene56670.t1 | AT1G07280 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.29e-44 | 163 |
| MS.gene56670.t1 | AT1G07280 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 5.40e-41 | 153 |
| MS.gene56670.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 4.31e-43 | 159 |
| MS.gene56670.t1 | AT2G29670 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 5.61e-36 | 139 |
| MS.gene56670.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 4.31e-43 | 159 |
| MS.gene56670.t1 | AT2G29670 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 5.61e-36 | 139 |
| MS.gene56670.t1 | AT1G07280 | 31.746 | 315 | 200 | 5 | 90 | 402 | 160 | 461 | 1.92e-42 | 156 |
| MS.gene56670.t1 | AT1G07280 | 48.315 | 89 | 40 | 1 | 254 | 342 | 389 | 471 | 2.32e-16 | 81.3 |
| MS.gene56670.t1 | AT4G17940 | 37.255 | 102 | 64 | 0 | 301 | 402 | 145 | 246 | 6.16e-15 | 75.1 |
| MS.gene56670.t1 | AT5G20190 | 39.394 | 99 | 60 | 0 | 306 | 404 | 156 | 254 | 1.15e-13 | 71.6 |
| MS.gene56670.t1 | AT1G80130 | 37.374 | 99 | 62 | 0 | 304 | 402 | 163 | 261 | 9.28e-13 | 68.9 |
| MS.gene56670.t1 | AT4G32340 | 37.374 | 99 | 61 | 1 | 307 | 404 | 111 | 209 | 5.05e-11 | 63.2 |
Find 77 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5.1:-64318095 | MS.gene56670:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5.1:-64319193 | MS.gene56670:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5.1:-64319409 | MS.gene56670:CDS |
| TTAATCATCCTTATAGATAA+AGG | 0.257329 | 5.1:+64319666 | None:intergenic |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5.1:-64319421 | MS.gene56670:CDS |
| TTGGAATCCCTTTATCTATA+AGG | 0.282474 | 5.1:-64319674 | MS.gene56670:CDS |
| TCTCTCCCAAACTTGAATAT+TGG | 0.313359 | 5.1:-64319995 | MS.gene56670:CDS |
| AATCAGAAGGAAGAGAATAA+AGG | 0.320334 | 5.1:+64319961 | None:intergenic |
| TAGTTTCCAATATTCAAGTT+TGG | 0.321034 | 5.1:+64319989 | None:intergenic |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5.1:+64318033 | None:intergenic |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5.1:-64318011 | MS.gene56670:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5.1:-64319448 | MS.gene56670:CDS |
| TGAAAATAAAAGAGAAATCT+TGG | 0.349066 | 5.1:-64319790 | MS.gene56670:CDS |
| TCTGGCCAACTAGGTGGTTC+AGG | 0.352770 | 5.1:+64319744 | None:intergenic |
| AGTTTCCAATATTCAAGTTT+GGG | 0.355232 | 5.1:+64319990 | None:intergenic |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5.1:+64319141 | None:intergenic |
| TAATCATCCTTATAGATAAA+GGG | 0.384763 | 5.1:+64319667 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5.1:+64317952 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5.1:-64319238 | MS.gene56670:CDS |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5.1:-64319642 | MS.gene56670:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5.1:-64318051 | MS.gene56670:CDS |
| CTCAAAATCTCTTCTCTCTC+TGG | 0.414567 | 5.1:+64319726 | None:intergenic |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5.1:-64319141 | MS.gene56670:CDS |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5.1:-64318094 | MS.gene56670:CDS |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5.1:-64319461 | MS.gene56670:CDS |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5.1:-64318103 | MS.gene56670:CDS |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5.1:-64319352 | MS.gene56670:CDS |
| ATCAGAAGGAAGAGAATAAA+GGG | 0.448088 | 5.1:+64319962 | None:intergenic |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5.1:-64319522 | MS.gene56670:CDS |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5.1:+64318135 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5.1:-64319499 | MS.gene56670:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5.1:-64319478 | MS.gene56670:CDS |
| TTCCTTCTCAAGAAACTTGA+GGG | 0.462431 | 5.1:-64319880 | MS.gene56670:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5.1:-64319022 | MS.gene56670:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5.1:-64319511 | MS.gene56670:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5.1:-64319205 | MS.gene56670:CDS |
| ACCCCTCAAGTTTCTTGAGA+AGG | 0.474613 | 5.1:+64319878 | None:intergenic |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5.1:-64318003 | MS.gene56670:CDS |
| GAAAGAAAAGTGAAAAGTGT+TGG | 0.480760 | 5.1:-64319693 | MS.gene56670:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5.1:-64319280 | MS.gene56670:CDS |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5.1:-64319536 | MS.gene56670:CDS |
| TCTTCTCTCTCTGGCCAACT+AGG | 0.491643 | 5.1:+64319735 | None:intergenic |
| GGTTGAATACCAAGAAAAGA+AGG | 0.496524 | 5.1:+64319765 | None:intergenic |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5.1:+64319321 | None:intergenic |
| CAGTTTCTTCTCTGCCACTA+AGG | 0.499014 | 5.1:-64319920 | MS.gene56670:CDS |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5.1:-64319235 | MS.gene56670:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5.1:-64319140 | MS.gene56670:CDS |
| TTTCCTTCTCAAGAAACTTG+AGG | 0.512218 | 5.1:-64319881 | MS.gene56670:CDS |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5.1:-64318064 | MS.gene56670:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5.1:-64319012 | MS.gene56670:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5.1:-64319199 | MS.gene56670:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5.1:-64319206 | MS.gene56670:CDS |
| CCACTAAGGAACAAAATCAA+TGG | 0.524829 | 5.1:-64319906 | MS.gene56670:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.526301 | 5.1:+64319057 | None:intergenic |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5.1:-64319127 | MS.gene56670:CDS |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5.1:-64319251 | MS.gene56670:CDS |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5.1:-64318163 | MS.gene56670:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5.1:-64318113 | MS.gene56670:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5.1:+64317995 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5.1:-64319011 | MS.gene56670:intron |
| TTCAACCTGAACCACCTAGT+TGG | 0.568199 | 5.1:-64319749 | MS.gene56670:CDS |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5.1:-64318000 | MS.gene56670:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5.1:-64319265 | MS.gene56670:CDS |
| GGTGATTTCAATGAATCAGA+AGG | 0.590260 | 5.1:+64319948 | None:intergenic |
| TCTCTCTCTGGCCAACTAGG+TGG | 0.595097 | 5.1:+64319738 | None:intergenic |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5.1:+64319013 | None:intergenic |
| GTGTGTGAGTCCTGTTTCTG+TGG | 0.607525 | 5.1:-64319151 | MS.gene56670:CDS |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5.1:-64319139 | MS.gene56670:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5.1:+64319411 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5.1:-64319535 | MS.gene56670:CDS |
| CAGAAGAACAAGAACAAGAA+CGG | 0.638001 | 5.1:+64319844 | None:intergenic |
| TCCTTCTCAAGAAACTTGAG+GGG | 0.638012 | 5.1:-64319879 | MS.gene56670:CDS |
| AAGTTTGGGAGAGACACTTG+AGG | 0.680950 | 5.1:+64320004 | None:intergenic |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5.1:-64318151 | MS.gene56670:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5.1:-64319312 | MS.gene56670:CDS |
| GGCAGAGAAGAAACTGAACG+TGG | 0.746900 | 5.1:+64319927 | None:intergenic |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5.1:-64319204 | MS.gene56670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5.1:64319341-64319360 | None:intergenic | 15.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5.1:64320001-64320020 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5.1:64318973-64318992 | MS.gene56670:intron | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5.1:64319748-64319767 | None:intergenic | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | chr5.1:64318286-64318305 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | chr5.1:64318160-64318179 | MS.gene56670:CDS | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | chr5.1:64318287-64318306 | None:intergenic | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5.1:64319254-64319273 | MS.gene56670:CDS | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5.1:64319746-64319765 | MS.gene56670:CDS | 20.0% |
| !!! | TTAGATGTTTTTGCATTATA+TGG | - | chr5.1:64319002-64319021 | MS.gene56670:intron | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5.1:64319634-64319653 | None:intergenic | 20.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5.1:64318489-64318508 | MS.gene56670:intron | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5.1:64319091-64319110 | None:intergenic | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5.1:64318308-64318327 | MS.gene56670:intron | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5.1:64319358-64319377 | MS.gene56670:CDS | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5.1:64319079-64319098 | MS.gene56670:CDS | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5.1:64318598-64318617 | MS.gene56670:intron | 25.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | chr5.1:64317963-64317982 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | chr5.1:64317964-64317983 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5.1:64319139-64319158 | None:intergenic | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5.1:64319610-64319629 | None:intergenic | 25.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5.1:64318414-64318433 | MS.gene56670:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5.1:64318745-64318764 | MS.gene56670:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5.1:64318712-64318731 | MS.gene56670:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5.1:64318415-64318434 | MS.gene56670:intron | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | chr5.1:64317992-64318011 | None:intergenic | 30.0% | |
| ACTTCATTCATCAATGATGA+AGG | + | chr5.1:64318632-64318651 | None:intergenic | 30.0% | |
| ATAACATCAACCATAAGAGT+TGG | + | chr5.1:64318542-64318561 | None:intergenic | 30.0% | |
| ATCAGAAGGAAGAGAATAAA+GGG | + | chr5.1:64317991-64318010 | None:intergenic | 30.0% | |
| ATGTATGTTAGGCACAAAAA+AGG | - | chr5.1:64319369-64319388 | MS.gene56670:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5.1:64319920-64319939 | None:intergenic | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5.1:64318472-64318491 | MS.gene56670:intron | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5.1:64319856-64319875 | MS.gene56670:CDS | 30.0% | |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5.1:64319497-64319516 | MS.gene56670:CDS | 30.0% | |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5.1:64319855-64319874 | MS.gene56670:CDS | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5.1:64318638-64318657 | MS.gene56670:intron | 30.0% | |
| TTGGAATCCCTTTATCTATA+AGG | - | chr5.1:64318276-64318295 | MS.gene56670:intron | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5.1:64319193-64319212 | MS.gene56670:CDS | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5.1:64319192-64319211 | MS.gene56670:CDS | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5.1:64318541-64318560 | MS.gene56670:intron | 30.0% |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5.1:64318502-64318521 | MS.gene56670:intron | 30.0% |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | chr5.1:64318257-64318276 | MS.gene56670:intron | 30.0% |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5.1:64319847-64319866 | MS.gene56670:CDS | 30.0% |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5.1:64318685-64318704 | MS.gene56670:intron | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5.1:64319574-64319593 | None:intergenic | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5.1:64318746-64318765 | MS.gene56670:intron | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5.1:64319569-64319588 | MS.gene56670:CDS | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5.1:64318744-64318763 | MS.gene56670:intron | 35.0% | |
| CAGAAGAACAAGAACAAGAA+CGG | + | chr5.1:64318109-64318128 | None:intergenic | 35.0% | |
| CCACTAAGGAACAAAATCAA+TGG | - | chr5.1:64318044-64318063 | MS.gene56670:CDS | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5.1:64318896-64318915 | None:intergenic | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | chr5.1:64318005-64318024 | None:intergenic | 35.0% | |
| GGTTGAATACCAAGAAAAGA+AGG | + | chr5.1:64318188-64318207 | None:intergenic | 35.0% | |
| GTTGTGATTACACACAATTC+AGG | + | chr5.1:64319396-64319415 | None:intergenic | 35.0% | |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5.1:64318670-64318689 | MS.gene56670:intron | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5.1:64319568-64319587 | None:intergenic | 35.0% | |
| TCTCTCCCAAACTTGAATAT+TGG | - | chr5.1:64317955-64317974 | MS.gene56670:CDS | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5.1:64319194-64319213 | MS.gene56670:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | chr5.1:64318070-64318089 | MS.gene56670:CDS | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5.1:64318939-64318958 | MS.gene56670:intron | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | chr5.1:64318069-64318088 | MS.gene56670:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | chr5.1:64318176-64318195 | MS.gene56670:CDS | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5.1:64319939-64319958 | MS.gene56670:CDS | 35.0% |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5.1:64319837-64319856 | MS.gene56670:CDS | 35.0% |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5.1:64318451-64318470 | MS.gene56670:intron | 35.0% |
| !!! | ATGGTTTTAAATTGCAGTCG+CGG | - | chr5.1:64319021-64319040 | MS.gene56670:CDS | 35.0% |
| !!! | CCATTGATTTTGTTCCTTAG+TGG | + | chr5.1:64318047-64318066 | None:intergenic | 35.0% |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5.1:64319201-64319220 | None:intergenic | 40.0% | |
| ATGCAGTCGATGTTGTTCAT+AGG | - | chr5.1:64319056-64319075 | MS.gene56670:CDS | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5.1:64318699-64318718 | MS.gene56670:intron | 40.0% | |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5.1:64318529-64318548 | MS.gene56670:intron | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5.1:64319557-64319576 | None:intergenic | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5.1:64318940-64318959 | None:intergenic | 40.0% | |
| CATTTGTCTGTCAACACTTG+AGG | + | chr5.1:64319280-64319299 | None:intergenic | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | chr5.1:64319439-64319458 | None:intergenic | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | chr5.1:64318227-64318246 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5.1:64318938-64318957 | MS.gene56670:intron | 40.0% | |
| GATTGAAGGGGATCAATATG+AGG | - | chr5.1:64318823-64318842 | MS.gene56670:intron | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5.1:64319886-64319905 | MS.gene56670:CDS | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | chr5.1:64319431-64319450 | MS.gene56670:CDS | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5.1:64318715-64318734 | MS.gene56670:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5.1:64318928-64318947 | MS.gene56670:intron | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | chr5.1:64318071-64318090 | MS.gene56670:CDS | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5.1:64318428-64318447 | MS.gene56670:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5.1:64318439-64318458 | MS.gene56670:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5.1:64318811-64318830 | MS.gene56670:intron | 40.0% |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5.1:64318810-64318829 | MS.gene56670:intron | 40.0% |
| AAGTTTGGGAGAGACACTTG+AGG | + | chr5.1:64317949-64317968 | None:intergenic | 45.0% | |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | chr5.1:64318075-64318094 | None:intergenic | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5.1:64318757-64318776 | MS.gene56670:intron | 45.0% | |
| CAGTTTCTTCTCTGCCACTA+AGG | - | chr5.1:64318030-64318049 | MS.gene56670:CDS | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5.1:64318812-64318831 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5.1:64319787-64319806 | MS.gene56670:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5.1:64319818-64319837 | None:intergenic | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5.1:64319419-64319438 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | chr5.1:64318201-64318220 | MS.gene56670:intron | 45.0% | |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5.1:64319950-64319969 | MS.gene56670:CDS | 45.0% |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5.1:64318809-64318828 | MS.gene56670:intron | 45.0% |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5.1:64319947-64319966 | MS.gene56670:CDS | 45.0% |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5.1:64318751-64318770 | MS.gene56670:intron | 50.0% | |
| GGCAGAGAAGAAACTGAACG+TGG | + | chr5.1:64318026-64318045 | None:intergenic | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5.1:64319418-64319437 | None:intergenic | 50.0% | |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5.1:64319958-64319977 | None:intergenic | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | chr5.1:64318218-64318237 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5.1:64319899-64319918 | MS.gene56670:CDS | 50.0% |
| !! | GTGTGTGAGTCCTGTTTCTG+TGG | - | chr5.1:64318799-64318818 | MS.gene56670:intron | 50.0% |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5.1:64319799-64319818 | MS.gene56670:CDS | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | chr5.1:64318215-64318234 | None:intergenic | 55.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | chr5.1:64318209-64318228 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 64317942 | 64320030 | 64317942 | ID=MS.gene56670 |
| chr5.1 | mRNA | 64317942 | 64320030 | 64317942 | ID=MS.gene56670.t1;Parent=MS.gene56670 |
| chr5.1 | exon | 64319012 | 64320030 | 64319012 | ID=MS.gene56670.t1.exon1;Parent=MS.gene56670.t1 |
| chr5.1 | CDS | 64319012 | 64320030 | 64319012 | ID=cds.MS.gene56670.t1;Parent=MS.gene56670.t1 |
| chr5.1 | exon | 64317942 | 64318197 | 64317942 | ID=MS.gene56670.t1.exon2;Parent=MS.gene56670.t1 |
| chr5.1 | CDS | 64317942 | 64318197 | 64317942 | ID=cds.MS.gene56670.t1;Parent=MS.gene56670.t1 |
| Gene Sequence |
| Protein sequence |
