Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05862.t1 | XP_003630882.1 | 92.8 | 433 | 27 | 4 | 1 | 432 | 39 | 468 | 1.30E-226 | 795.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05862.t1 | Q9C9T2 | 53.8 | 351 | 147 | 8 | 37 | 382 | 72 | 412 | 2.1e-100 | 367.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05862.t1 | G7L9S5 | 92.8 | 433 | 27 | 4 | 1 | 432 | 39 | 468 | 9.3e-227 | 795.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene05862 | 0.832221 | 1.07E-55 | -1.69E-46 |
| MS.gene050148 | MS.gene05862 | 0.812836 | 3.47E-51 | -1.69E-46 |
| MS.gene050149 | MS.gene05862 | 0.800796 | 1.22E-48 | -1.69E-46 |
| MS.gene050669 | MS.gene05862 | 0.811644 | 6.31E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene05862 | 0.811962 | 5.39E-51 | -1.69E-46 |
| MS.gene05861 | MS.gene05862 | 0.935839 | 4.50E-97 | -1.69E-46 |
| MS.gene05862 | MS.gene05969 | 0.939296 | 1.61E-99 | -1.69E-46 |
| MS.gene05862 | MS.gene061682 | 0.833709 | 4.56E-56 | -1.69E-46 |
| MS.gene05862 | MS.gene063094 | 0.830001 | 3.76E-55 | -1.69E-46 |
| MS.gene05862 | MS.gene063690 | 0.988125 | 8.33E-173 | -1.69E-46 |
| MS.gene05862 | MS.gene06539 | 0.841275 | 5.24E-58 | -1.69E-46 |
| MS.gene05862 | MS.gene06784 | 0.848952 | 4.42E-60 | -1.69E-46 |
| MS.gene05862 | MS.gene069576 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene05862 | MS.gene072560 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene05862 | MS.gene09747 | 0.824284 | 8.77E-54 | -1.69E-46 |
| MS.gene05862 | MS.gene21214 | 0.818581 | 1.82E-52 | -1.69E-46 |
| MS.gene05862 | MS.gene25879 | 0.83123 | 1.88E-55 | -1.69E-46 |
| MS.gene05862 | MS.gene56725 | 0.878267 | 3.22E-69 | -1.69E-46 |
| MS.gene05862 | MS.gene60808 | 0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene05862 | MS.gene63435 | 0.807068 | 6.06E-50 | -1.69E-46 |
| MS.gene05862 | MS.gene68141 | 0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene05862 | MS.gene73869 | 0.839687 | 1.37E-57 | -1.69E-46 |
| MS.gene05862 | MS.gene79758 | 0.802983 | 4.33E-49 | -1.69E-46 |
| MS.gene05862 | MS.gene83116 | 0.80376 | 2.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05862.t1 | MTR_8g104510 | 91.686 | 433 | 32 | 4 | 1 | 432 | 39 | 468 | 0.0 | 800 |
| MS.gene05862.t1 | MTR_8g104490 | 88.940 | 434 | 42 | 6 | 1 | 432 | 39 | 468 | 0.0 | 775 |
| MS.gene05862.t1 | MTR_8g104490 | 88.206 | 407 | 42 | 6 | 28 | 432 | 1 | 403 | 0.0 | 720 |
| MS.gene05862.t1 | MTR_6g083730 | 62.069 | 435 | 151 | 8 | 2 | 432 | 42 | 466 | 0.0 | 536 |
| MS.gene05862.t1 | MTR_6g083320 | 68.077 | 260 | 79 | 4 | 2 | 259 | 42 | 299 | 5.41e-123 | 363 |
| MS.gene05862.t1 | MTR_4g128600 | 48.851 | 348 | 172 | 4 | 2 | 346 | 43 | 387 | 2.62e-111 | 341 |
| MS.gene05862.t1 | MTR_2g011810 | 45.288 | 382 | 193 | 7 | 2 | 378 | 46 | 416 | 5.68e-111 | 340 |
| MS.gene05862.t1 | MTR_4g090970 | 47.414 | 348 | 177 | 4 | 2 | 346 | 45 | 389 | 5.54e-109 | 335 |
| MS.gene05862.t1 | MTR_2g450080 | 40.363 | 441 | 241 | 9 | 2 | 423 | 44 | 481 | 1.06e-104 | 322 |
| MS.gene05862.t1 | MTR_4g106810 | 53.556 | 239 | 108 | 2 | 50 | 288 | 79 | 314 | 3.16e-87 | 276 |
| MS.gene05862.t1 | MTR_7g112000 | 34.673 | 398 | 236 | 11 | 12 | 403 | 44 | 423 | 2.94e-56 | 194 |
| MS.gene05862.t1 | MTR_7g111980 | 36.070 | 341 | 189 | 10 | 12 | 341 | 59 | 381 | 5.75e-49 | 176 |
| MS.gene05862.t1 | MTR_7g111960 | 33.511 | 376 | 223 | 11 | 12 | 373 | 60 | 422 | 9.04e-47 | 169 |
| MS.gene05862.t1 | MTR_7g111980 | 37.838 | 296 | 169 | 8 | 54 | 341 | 10 | 298 | 1.97e-46 | 167 |
| MS.gene05862.t1 | MTR_6g083810 | 55.319 | 94 | 39 | 3 | 2 | 93 | 42 | 134 | 2.98e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05862.t1 | AT1G73805 | 52.632 | 380 | 162 | 9 | 8 | 382 | 46 | 412 | 1.59e-132 | 389 |
| MS.gene05862.t1 | AT5G57580 | 49.429 | 350 | 169 | 5 | 2 | 346 | 41 | 387 | 4.63e-110 | 338 |
| MS.gene05862.t1 | AT4G25800 | 48.138 | 349 | 175 | 4 | 2 | 346 | 30 | 376 | 5.11e-108 | 331 |
| MS.gene05862.t1 | AT4G25800 | 48.138 | 349 | 175 | 4 | 2 | 346 | 30 | 376 | 5.11e-108 | 331 |
| MS.gene05862.t1 | AT2G18750 | 46.686 | 347 | 179 | 5 | 2 | 346 | 47 | 389 | 7.63e-107 | 329 |
| MS.gene05862.t1 | AT2G18750 | 46.686 | 347 | 179 | 5 | 2 | 346 | 47 | 389 | 7.63e-107 | 329 |
| MS.gene05862.t1 | AT2G18750 | 46.686 | 347 | 179 | 5 | 2 | 346 | 47 | 389 | 7.63e-107 | 329 |
| MS.gene05862.t1 | AT2G24300 | 43.875 | 351 | 192 | 3 | 2 | 349 | 41 | 389 | 1.71e-95 | 299 |
| MS.gene05862.t1 | AT2G24300 | 43.875 | 351 | 192 | 3 | 2 | 349 | 37 | 385 | 2.26e-95 | 298 |
| MS.gene05862.t1 | AT4G31000 | 43.094 | 362 | 195 | 6 | 2 | 359 | 41 | 395 | 4.49e-94 | 294 |
| MS.gene05862.t1 | AT5G62570 | 44.868 | 341 | 174 | 6 | 12 | 347 | 32 | 363 | 1.13e-91 | 286 |
| MS.gene05862.t1 | AT5G62570 | 44.868 | 341 | 174 | 6 | 12 | 347 | 47 | 378 | 1.82e-91 | 286 |
| MS.gene05862.t1 | AT5G62570 | 47.249 | 309 | 150 | 5 | 12 | 315 | 47 | 347 | 9.62e-91 | 280 |
| MS.gene05862.t1 | AT2G24300 | 43.243 | 333 | 184 | 3 | 20 | 349 | 8 | 338 | 3.79e-88 | 278 |
| MS.gene05862.t1 | AT4G31000 | 38.953 | 344 | 183 | 7 | 20 | 359 | 54 | 374 | 1.32e-73 | 240 |
| MS.gene05862.t1 | AT5G62570 | 47.893 | 261 | 127 | 4 | 12 | 271 | 47 | 299 | 1.09e-71 | 228 |
| MS.gene05862.t1 | AT5G26920 | 38.439 | 346 | 181 | 11 | 12 | 347 | 45 | 368 | 2.26e-70 | 228 |
| MS.gene05862.t1 | AT5G26920 | 38.439 | 346 | 181 | 11 | 12 | 347 | 45 | 368 | 2.90e-69 | 229 |
| MS.gene05862.t1 | AT5G26920 | 38.150 | 346 | 174 | 12 | 12 | 347 | 45 | 360 | 1.10e-66 | 223 |
Find 0 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATGAATATATAGTT+AGG | - | 57344:28440-28459 | MS.gene05862:intergenic | 10.0% |
| !! | TATAAATGATGTATATTTAT+AGG | + | 57344:28668-28687 | MS.gene05862:intron | 10.0% |
| !! | TATACATCATTTATAATTAT+TGG | - | 57344:28663-28682 | MS.gene05862:intergenic | 10.0% |
| !! | TTAATTTCATTTCAAAATTA+TGG | - | 57344:26973-26992 | MS.gene05862:intergenic | 10.0% |
| !! | AAATAACATTCTCAATTATA+TGG | + | 57344:28716-28735 | MS.gene05862:intron | 15.0% |
| !! | CATTATTAATGTTCAATAAA+TGG | + | 57344:28487-28506 | MS.gene05862:intron | 15.0% |
| !! | TATAAATTAGAATATCTTGA+AGG | - | 57344:27817-27836 | MS.gene05862:intergenic | 15.0% |
| !!! | TACTTTTGGTTAAATAATTT+TGG | - | 57344:29183-29202 | MS.gene05862:intergenic | 15.0% |
| !!! | TCTAAATTTCATTTTTCAAT+TGG | - | 57344:29211-29230 | MS.gene05862:intergenic | 15.0% |
| !!! | TTCTCTATGATTTTTTTTTT+TGG | + | 57344:27895-27914 | MS.gene05862:intron | 15.0% |
| !! | AAAATTATGGTAAAGTTGAA+TGG | - | 57344:26960-26979 | MS.gene05862:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | - | 57344:27221-27240 | MS.gene05862:intergenic | 20.0% |
| !! | ACTAAAATAAAGGATCATAT+AGG | + | 57344:28122-28141 | MS.gene05862:intron | 20.0% |
| !! | ACTGTTAATTAATGATTAGT+TGG | + | 57344:28050-28069 | MS.gene05862:intron | 20.0% |
| !! | CTAAAATAAAGGATCATATA+GGG | + | 57344:28123-28142 | MS.gene05862:intron | 20.0% |
| !! | CTATTACTATAAGACTAAAA+AGG | - | 57344:28153-28172 | MS.gene05862:intergenic | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | - | 57344:29015-29034 | MS.gene05862:intergenic | 20.0% |
| !! | TTGGGTTATAACTAAAATAA+AGG | + | 57344:28112-28131 | MS.gene05862:intron | 20.0% |
| !!! | GCACAATGTATTTTTATATA+CGG | + | 57344:28586-28605 | MS.gene05862:intron | 20.0% |
| !!! | TAATTTATTTTACGGTTGTT+GGG | + | 57344:28094-28113 | MS.gene05862:intron | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | + | 57344:29342-29361 | MS.gene05862:CDS | 20.0% |
| !!! | TTAATTTATTTTACGGTTGT+TGG | + | 57344:28093-28112 | MS.gene05862:intron | 20.0% |
| !!! | TTCAATTGGAAATTTACTTT+TGG | - | 57344:29197-29216 | MS.gene05862:intergenic | 20.0% |
| !!! | TTTTGATCATATGTTATAAC+TGG | - | 57344:29333-29352 | MS.gene05862:intergenic | 20.0% |
| ! | AAAAACCAATGCATAGAAAA+AGG | - | 57344:28990-29009 | MS.gene05862:intergenic | 25.0% |
| ! | AACAACAATAATGCACAAAT+AGG | + | 57344:29402-29421 | MS.gene05862:CDS | 25.0% |
| ! | AATGAATATATAGTTAGGAG+AGG | - | 57344:28435-28454 | MS.gene05862:intergenic | 25.0% |
| ! | AATGAGAATCCAATATGTTA+GGG | + | 57344:27726-27745 | MS.gene05862:intron | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | - | 57344:27368-27387 | MS.gene05862:intergenic | 25.0% |
| ! | AGAATTGAATCTTACTATGA+GGG | + | 57344:27496-27515 | MS.gene05862:CDS | 25.0% |
| ! | AGGGTTTATATAGATTAAGA+TGG | - | 57344:28415-28434 | MS.gene05862:intergenic | 25.0% |
| ! | ATGAATATATAGTTAGGAGA+GGG | - | 57344:28434-28453 | MS.gene05862:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | - | 57344:27367-27386 | MS.gene05862:intergenic | 25.0% |
| ! | TAAAACTAACCCTAACATAT+TGG | - | 57344:27738-27757 | MS.gene05862:intergenic | 25.0% |
| ! | TAATGAGAATCCAATATGTT+AGG | + | 57344:27725-27744 | MS.gene05862:intron | 25.0% |
| ! | TGTTGAGATAAATTTAGTCA+CGG | - | 57344:27007-27026 | MS.gene05862:intergenic | 25.0% |
| ! | TTTATTGAATCTCACTATAC+AGG | + | 57344:29267-29286 | MS.gene05862:intron | 25.0% |
| AACATGTCTTTGATATGATC+AGG | + | 57344:27103-27122 | MS.gene05862:intron | 30.0% | |
| AGATAAATTTAGTCACGGTA+CGG | - | 57344:27002-27021 | MS.gene05862:intergenic | 30.0% | |
| ATAGAAATTGTAGTCCTTGA+TGG | + | 57344:27374-27393 | MS.gene05862:CDS | 30.0% | |
| ATCCTTAACAACAAAAGCTT+CGG | - | 57344:27651-27670 | MS.gene05862:intergenic | 30.0% | |
| CTAGTGAAAATGAATCATCA+TGG | + | 57344:27408-27427 | MS.gene05862:CDS | 30.0% | |
| GAGAATTGAATCTTACTATG+AGG | + | 57344:27495-27514 | MS.gene05862:CDS | 30.0% | |
| TGTGATGCATTTAAATGAAG+AGG | - | 57344:27947-27966 | MS.gene05862:intergenic | 30.0% | |
| TTAGAGAAGATTGGTAAAGA+CGG | + | 57344:28290-28309 | MS.gene05862:CDS | 30.0% | |
| TTCAAATGGATGGTAAATTG+AGG | - | 57344:28850-28869 | MS.gene05862:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | + | 57344:28864-28883 | MS.gene05862:CDS | 30.0% | |
| TTTGGCATATTGCATTCAAA+TGG | - | 57344:28864-28883 | MS.gene05862:intergenic | 30.0% | |
| ! | ATTTTGCTACCTGTGAATAT+TGG | - | 57344:27263-27282 | MS.gene05862:intergenic | 30.0% |
| ! | GATGATTCATTTTCACTAGA+AGG | - | 57344:27407-27426 | MS.gene05862:intergenic | 30.0% |
| ACAAAAAGTTGACCTCAGAA+GGG | + | 57344:28321-28340 | MS.gene05862:CDS | 35.0% | |
| ACGTATCCAGCTAGAATTAT+CGG | - | 57344:27555-27574 | MS.gene05862:intergenic | 35.0% | |
| AGCTAATTAAACTAGCTACC+TGG | + | 57344:27971-27990 | MS.gene05862:intron | 35.0% | |
| AGGTAGCAAAATACTAGACA+CGG | + | 57344:27271-27290 | MS.gene05862:CDS | 35.0% | |
| AGTATTGTGAAAGAGAGAAC+TGG | + | 57344:27452-27471 | MS.gene05862:CDS | 35.0% | |
| ATATGATCAGGTGAATGAAG+AGG | + | 57344:27115-27134 | MS.gene05862:intron | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | + | 57344:29066-29085 | MS.gene05862:CDS | 35.0% | |
| ATGGTTAGAGCTAACATCAA+TGG | + | 57344:28883-28902 | MS.gene05862:CDS | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | - | 57344:27191-27210 | MS.gene05862:intergenic | 35.0% | |
| ATTGTTTGCAAATTGCTCCA+TGG | - | 57344:29298-29317 | MS.gene05862:intergenic | 35.0% | |
| CAAACTTCATCCTTTAGACT+TGG | - | 57344:28266-28285 | MS.gene05862:intergenic | 35.0% | |
| CAAGTCTAAAGGATGAAGTT+TGG | + | 57344:28264-28283 | MS.gene05862:CDS | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | + | 57344:28799-28818 | MS.gene05862:CDS | 35.0% | |
| CGAGACATTAACAACACATT+GGG | + | 57344:28922-28941 | MS.gene05862:CDS | 35.0% | |
| CTTACCACTCTTCTAAGTAA+AGG | - | 57344:26927-26946 | MS.gene05862:intergenic | 35.0% | |
| CTTTCACTTCCAATATTCAC+AGG | + | 57344:27251-27270 | MS.gene05862:CDS | 35.0% | |
| GCATATTGCATTCAAATGGA+TGG | - | 57344:28860-28879 | MS.gene05862:intergenic | 35.0% | |
| GTATTGTGAAAGAGAGAACT+GGG | + | 57344:27453-27472 | MS.gene05862:CDS | 35.0% | |
| TAGAAAAAGGTAGCAGTAGA+AGG | - | 57344:28977-28996 | MS.gene05862:intergenic | 35.0% | |
| TAGAAGGAAAATCTCCATCA+AGG | - | 57344:27391-27410 | MS.gene05862:intergenic | 35.0% | |
| TCAACAAGAATCACACTGAT+TGG | - | 57344:27305-27324 | MS.gene05862:intergenic | 35.0% | |
| TTCAATTCTCCTGTAAGCAA+TGG | - | 57344:27485-27504 | MS.gene05862:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | + | 57344:27190-27209 | MS.gene05862:CDS | 35.0% | |
| TTGAATCTTACTATGAGGGA+TGG | + | 57344:27500-27519 | MS.gene05862:CDS | 35.0% | |
| ! | AACATGCAAAACCTTTTCTC+TGG | + | 57344:26894-26913 | MS.gene05862:CDS | 35.0% |
| ! | AACGTTGCTTTGTTAACTCA+AGG | + | 57344:29115-29134 | MS.gene05862:CDS | 35.0% |
| ! | CAACAAGAATCACACTGATT+GGG | - | 57344:27304-27323 | MS.gene05862:intergenic | 35.0% |
| ! | CCAATGTGTTGTTAATGTCT+CGG | - | 57344:28924-28943 | MS.gene05862:intergenic | 35.0% |
| ! | TGCTACCTTTTTCTATGCAT+TGG | + | 57344:28982-29001 | MS.gene05862:intron | 35.0% |
| !! | TGATGTTAGCTCTAACCATT+TGG | - | 57344:28882-28901 | MS.gene05862:intergenic | 35.0% |
| !! | TGGTTTTGCTAGCAGATTTT+AGG | + | 57344:28736-28755 | MS.gene05862:intron | 35.0% |
| AACAAACTCTATGTCTACCG+CGG | + | 57344:28823-28842 | MS.gene05862:CDS | 40.0% | |
| AACTGTTGTAATCCCTTCTG+AGG | - | 57344:28336-28355 | MS.gene05862:intergenic | 40.0% | |
| AAGAAAACTCACATTCGCCA+CGG | - | 57344:27676-27695 | MS.gene05862:intergenic | 40.0% | |
| ACATCATCCACCAAGTCTAA+AGG | + | 57344:28253-28272 | MS.gene05862:CDS | 40.0% | |
| ACCACCAAAGCATATATACC+AGG | - | 57344:27992-28011 | MS.gene05862:intergenic | 40.0% | |
| ACCTGGTATATATGCTTTGG+TGG | + | 57344:27988-28007 | MS.gene05862:intron | 40.0% | |
| ACTTCATCCTTTAGACTTGG+TGG | - | 57344:28263-28282 | MS.gene05862:intergenic | 40.0% | |
| AGCAAAATACTAGACACGGA+TGG | + | 57344:27275-27294 | MS.gene05862:CDS | 40.0% | |
| AGTTCACCGATAATTCTAGC+TGG | + | 57344:27546-27565 | MS.gene05862:CDS | 40.0% | |
| AGTTGTTCTCCTACTTGATG+AGG | + | 57344:28171-28190 | MS.gene05862:intron | 40.0% | |
| CACAAAAAGTTGACCTCAGA+AGG | + | 57344:28320-28339 | MS.gene05862:CDS | 40.0% | |
| CATTAACAACACATTGGGCA+AGG | + | 57344:28927-28946 | MS.gene05862:CDS | 40.0% | |
| CCGAGACATTAACAACACAT+TGG | + | 57344:28921-28940 | MS.gene05862:CDS | 40.0% | |
| CTAGACTTGTAGGGACTATT+TGG | - | 57344:27340-27359 | MS.gene05862:intergenic | 40.0% | |
| GCATGCAAAGACTTGTGTAA+TGG | + | 57344:28798-28817 | MS.gene05862:CDS | 40.0% | |
| GCTACCTGGTATATATGCTT+TGG | + | 57344:27985-28004 | MS.gene05862:intron | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | + | 57344:26920-26939 | MS.gene05862:CDS | 40.0% | |
| GGACTATTTGGTCATTGCTT+TGG | - | 57344:27328-27347 | MS.gene05862:intergenic | 40.0% | |
| GGTGATAATTGTCTAGAGAC+CGG | + | 57344:29363-29382 | MS.gene05862:CDS | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | - | 57344:27533-27552 | MS.gene05862:intergenic | 40.0% | |
| GTTTGGCGTTTAGAGAAGAT+TGG | + | 57344:28281-28300 | MS.gene05862:CDS | 40.0% | |
| TAAGGTAGGCCATTCATGAA+TGG | - | 57344:29462-29481 | MS.gene05862:intergenic | 40.0% | |
| TAGTGTCATCCTCATCAAGT+AGG | - | 57344:28183-28202 | MS.gene05862:intergenic | 40.0% | |
| TCACTATACAGGTGAAACCA+TGG | + | 57344:29278-29297 | MS.gene05862:intron | 40.0% | |
| TGAAAGAGAGAACTGGGAAA+AGG | + | 57344:27459-27478 | MS.gene05862:CDS | 40.0% | |
| TGGTATGTCCGAGAAAATGT+GGG | + | 57344:28762-28781 | MS.gene05862:CDS | 40.0% | |
| TTACCTTTCTGAGCCTAAGA+GGG | - | 57344:28388-28407 | MS.gene05862:intergenic | 40.0% | |
| TTCCCAGATTCACAATCAGA+CGG | + | 57344:29486-29505 | MS.gene05862:CDS | 40.0% | |
| TTGGTATGTCCGAGAAAATG+TGG | + | 57344:28761-28780 | MS.gene05862:CDS | 40.0% | |
| ! | GTGTTGTTAATGTCTCGGAT+GGG | - | 57344:28919-28938 | MS.gene05862:intergenic | 40.0% |
| ! | GTTGTTTGCTACATAGTTGC+CGG | - | 57344:29385-29404 | MS.gene05862:intergenic | 40.0% |
| ! | TGAGAGAAGCATATGCTAGA+TGG | + | 57344:29056-29075 | MS.gene05862:CDS | 40.0% |
| ! | TGTCACATCCCACATTTTCT+CGG | - | 57344:28773-28792 | MS.gene05862:intergenic | 40.0% |
| ! | TGTGTTGTTAATGTCTCGGA+TGG | - | 57344:28920-28939 | MS.gene05862:intergenic | 40.0% |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | + | 57344:27591-27610 | MS.gene05862:CDS | 40.0% |
| !! | GACTTTGTTATTGATCGTGG+TGG | - | 57344:27167-27186 | MS.gene05862:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | - | 57344:27170-27189 | MS.gene05862:intergenic | 40.0% |
| !! | TGAATCATCATGGACTAGTG+AGG | + | 57344:27418-27437 | MS.gene05862:CDS | 40.0% |
| !! | TTTGTTGTTAAGGATCACCG+TGG | + | 57344:27656-27675 | MS.gene05862:CDS | 40.0% |
| !!! | GACCGAAGCTTTTGTTGTTA+AGG | + | 57344:27646-27665 | MS.gene05862:CDS | 40.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | - | 57344:26908-26927 | MS.gene05862:intergenic | 45.0% | |
| AATCTGGGAAGCTGTAAGGT+AGG | - | 57344:29476-29495 | MS.gene05862:intergenic | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | + | 57344:27515-27534 | MS.gene05862:CDS | 45.0% | |
| ATTGGGTGTGCTAGACTTGT+AGG | - | 57344:27350-27369 | MS.gene05862:intergenic | 45.0% | |
| CACCGTCTGATTGTGAATCT+GGG | - | 57344:29491-29510 | MS.gene05862:intergenic | 45.0% | |
| GCCACATCACCATTCATGAA+TGG | + | 57344:29450-29469 | MS.gene05862:CDS | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | + | 57344:27517-27536 | MS.gene05862:CDS | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | + | 57344:27516-27535 | MS.gene05862:CDS | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | - | 57344:28914-28933 | MS.gene05862:intergenic | 45.0% | |
| GTTACCTTTCTGAGCCTAAG+AGG | - | 57344:28389-28408 | MS.gene05862:intergenic | 45.0% | |
| TGTCTGTAGTTGACCCTCTT+AGG | + | 57344:28372-28391 | MS.gene05862:CDS | 45.0% | |
| TGTGAATCTGGGAAGCTGTA+AGG | - | 57344:29480-29499 | MS.gene05862:intergenic | 45.0% | |
| TTGGGTGTGCTAGACTTGTA+GGG | - | 57344:27349-27368 | MS.gene05862:intergenic | 45.0% | |
| ! | CAAAGTGTCCGAATTCGTGA+AGG | + | 57344:27620-27639 | MS.gene05862:CDS | 45.0% |
| ! | CACAAATAGGTTGCATCGAC+TGG | + | 57344:29415-29434 | MS.gene05862:CDS | 45.0% |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | + | 57344:26899-26918 | MS.gene05862:CDS | 45.0% |
| ! | GCCATTCATGAATGGTGATG+TGG | - | 57344:29454-29473 | MS.gene05862:intergenic | 45.0% |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | + | 57344:27590-27609 | MS.gene05862:CDS | 45.0% |
| ! | TGCTAGATGGAATGAGTTGG+AGG | + | 57344:29069-29088 | MS.gene05862:CDS | 45.0% |
| ! | TGCTAGCAGATTTTAGGCGT+TGG | + | 57344:28742-28761 | MS.gene05862:intron | 45.0% |
| !!! | TTTTTGTTTAATTTATTTTA+CGG | + | 57344:28086-28105 | MS.gene05862:intron | 5.0% |
| !!! | TTTTTTTTTTTATAAAGAAA+AGG | + | 57344:27072-27091 | MS.gene05862:intron | 5.0% |
| CGGTCATGCCTTCACGAATT+CGG | - | 57344:27631-27650 | MS.gene05862:intergenic | 50.0% | |
| GGATGGTAAATTGAGGACCG+CGG | - | 57344:28843-28862 | MS.gene05862:intergenic | 50.0% | |
| GGGAAAAGGCCATTGCTTAC+AGG | + | 57344:27473-27492 | MS.gene05862:CDS | 50.0% | |
| TGACCCTCTTAGGCTCAGAA+AGG | + | 57344:28382-28401 | MS.gene05862:CDS | 50.0% | |
| TGTCTCGGATGGGAATGGTT+TGG | - | 57344:28909-28928 | MS.gene05862:intergenic | 50.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | - | 57344:27611-27630 | MS.gene05862:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57344 | gene | 26885 | 29510 | 26885 | ID=MS.gene05862 |
| 57344 | mRNA | 26885 | 29510 | 26885 | ID=MS.gene05862.t1;Parent=MS.gene05862 |
| 57344 | exon | 26885 | 26941 | 26885 | ID=MS.gene05862.t1.exon1;Parent=MS.gene05862.t1 |
| 57344 | CDS | 26885 | 26941 | 26885 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| 57344 | exon | 27125 | 27683 | 27125 | ID=MS.gene05862.t1.exon2;Parent=MS.gene05862.t1 |
| 57344 | CDS | 27125 | 27683 | 27125 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| 57344 | exon | 28243 | 28403 | 28243 | ID=MS.gene05862.t1.exon3;Parent=MS.gene05862.t1 |
| 57344 | CDS | 28243 | 28403 | 28243 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| 57344 | exon | 28751 | 28948 | 28751 | ID=MS.gene05862.t1.exon4;Parent=MS.gene05862.t1 |
| 57344 | CDS | 28751 | 28948 | 28751 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| 57344 | exon | 29037 | 29136 | 29037 | ID=MS.gene05862.t1.exon5;Parent=MS.gene05862.t1 |
| 57344 | CDS | 29037 | 29136 | 29037 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| 57344 | exon | 29289 | 29510 | 29289 | ID=MS.gene05862.t1.exon6;Parent=MS.gene05862.t1 |
| 57344 | CDS | 29289 | 29510 | 29289 | ID=cds.MS.gene05862.t1;Parent=MS.gene05862.t1 |
| Gene Sequence |
| Protein sequence |
