Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57134.t1 | XP_003618343.2 | 83.8 | 1048 | 63 | 3 | 1 | 944 | 1 | 1045 | 0.00E+00 | 1560 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57134.t1 | Q8L7C2 | 51.5 | 970 | 404 | 13 | 35 | 943 | 47 | 1011 | 4.2e-255 | 882.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57134.t1 | G7KJD3 | 83.8 | 1048 | 63 | 3 | 1 | 944 | 1 | 1045 | 0.0e+00 | 1560.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050228 | MS.gene57134 | 0.810886 | 9.22E-51 | -1.69E-46 |
MS.gene050623 | MS.gene57134 | -0.818189 | 2.23E-52 | -1.69E-46 |
MS.gene050642 | MS.gene57134 | 0.863721 | 2.03E-64 | -1.69E-46 |
MS.gene051983 | MS.gene57134 | 0.822829 | 1.92E-53 | -1.69E-46 |
MS.gene052176 | MS.gene57134 | 0.819109 | 1.38E-52 | -1.69E-46 |
MS.gene052600 | MS.gene57134 | 0.830538 | 2.78E-55 | -1.69E-46 |
MS.gene054942 | MS.gene57134 | 0.811492 | 6.81E-51 | -1.69E-46 |
MS.gene056979 | MS.gene57134 | 0.814401 | 1.57E-51 | -1.69E-46 |
MS.gene060084 | MS.gene57134 | 0.807872 | 4.09E-50 | -1.69E-46 |
MS.gene060297 | MS.gene57134 | 0.848059 | 7.80E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57134.t1 | MTR_6g008410 | 77.735 | 1051 | 121 | 9 | 1 | 944 | 1 | 1045 | 0.0 | 1468 |
MS.gene57134.t1 | MTR_1g475240 | 39.615 | 780 | 374 | 18 | 4 | 717 | 42 | 790 | 7.74e-164 | 501 |
MS.gene57134.t1 | MTR_1g075190 | 39.615 | 780 | 374 | 18 | 4 | 717 | 42 | 790 | 7.74e-164 | 501 |
MS.gene57134.t1 | MTR_4g126140 | 43.089 | 615 | 304 | 6 | 110 | 698 | 135 | 729 | 3.71e-149 | 459 |
MS.gene57134.t1 | MTR_6g084410 | 42.088 | 613 | 307 | 9 | 135 | 721 | 194 | 784 | 4.66e-145 | 451 |
MS.gene57134.t1 | MTR_8g104340 | 36.788 | 685 | 329 | 14 | 13 | 679 | 5 | 603 | 7.91e-128 | 400 |
MS.gene57134.t1 | MTR_2g100660 | 39.172 | 628 | 321 | 11 | 118 | 698 | 123 | 736 | 1.63e-121 | 389 |
MS.gene57134.t1 | MTR_8g104340 | 33.499 | 603 | 293 | 16 | 13 | 593 | 5 | 521 | 7.46e-86 | 285 |
MS.gene57134.t1 | MTR_8g104340 | 33.966 | 527 | 256 | 13 | 13 | 533 | 5 | 445 | 4.15e-79 | 265 |
MS.gene57134.t1 | MTR_8g066010 | 37.829 | 304 | 148 | 6 | 165 | 462 | 1 | 269 | 4.90e-57 | 201 |
MS.gene57134.t1 | MTR_1g050760 | 30.469 | 256 | 156 | 8 | 526 | 773 | 123 | 364 | 1.67e-24 | 108 |
MS.gene57134.t1 | MTR_1g050760 | 30.469 | 256 | 156 | 8 | 526 | 773 | 8 | 249 | 1.75e-24 | 105 |
MS.gene57134.t1 | MTR_4g067300 | 37.423 | 163 | 96 | 3 | 539 | 699 | 151 | 309 | 1.91e-22 | 101 |
MS.gene57134.t1 | MTR_4g120880 | 36.269 | 193 | 117 | 3 | 511 | 700 | 149 | 338 | 4.91e-22 | 99.4 |
MS.gene57134.t1 | MTR_4g120880 | 38.509 | 161 | 93 | 3 | 511 | 668 | 149 | 306 | 4.45e-20 | 92.4 |
MS.gene57134.t1 | MTR_6g004480 | 36.585 | 164 | 99 | 2 | 533 | 694 | 124 | 284 | 5.98e-15 | 79.7 |
MS.gene57134.t1 | MTR_0194s0020 | 28.169 | 142 | 80 | 3 | 102 | 241 | 87 | 208 | 2.46e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57134.t1 | AT3G01370 | 52.044 | 1003 | 392 | 18 | 18 | 943 | 21 | 1011 | 0.0 | 951 |
MS.gene57134.t1 | AT3G18390 | 44.332 | 591 | 287 | 7 | 140 | 706 | 229 | 801 | 2.35e-160 | 492 |
MS.gene57134.t1 | AT4G14510 | 42.357 | 628 | 286 | 10 | 148 | 717 | 216 | 825 | 1.75e-150 | 468 |
MS.gene57134.t1 | AT3G23070 | 39.972 | 708 | 371 | 10 | 46 | 721 | 117 | 802 | 6.19e-145 | 453 |
MS.gene57134.t1 | AT4G29750 | 41.842 | 619 | 297 | 10 | 143 | 728 | 233 | 821 | 8.53e-144 | 449 |
MS.gene57134.t1 | AT4G29750 | 42.857 | 581 | 274 | 8 | 143 | 695 | 233 | 783 | 2.05e-143 | 447 |
MS.gene57134.t1 | AT5G16180 | 42.787 | 409 | 210 | 6 | 321 | 705 | 311 | 719 | 2.18e-90 | 303 |
MS.gene57134.t1 | AT5G16180 | 54.305 | 151 | 69 | 0 | 321 | 471 | 311 | 461 | 3.41e-50 | 186 |
MS.gene57134.t1 | AT4G13070 | 41.935 | 155 | 75 | 5 | 524 | 670 | 144 | 291 | 1.72e-23 | 103 |
MS.gene57134.t1 | AT2G28480 | 36.957 | 184 | 107 | 4 | 518 | 699 | 124 | 300 | 3.72e-22 | 100 |
MS.gene57134.t1 | AT3G25440 | 33.136 | 169 | 106 | 3 | 533 | 697 | 149 | 314 | 3.48e-21 | 98.2 |
MS.gene57134.t1 | AT3G25440 | 33.136 | 169 | 106 | 3 | 533 | 697 | 85 | 250 | 5.76e-21 | 96.7 |
MS.gene57134.t1 | AT3G25440 | 33.793 | 145 | 91 | 2 | 555 | 697 | 18 | 159 | 7.45e-20 | 91.7 |
MS.gene57134.t1 | AT3G25440 | 33.793 | 145 | 91 | 2 | 555 | 697 | 18 | 159 | 7.45e-20 | 91.7 |
MS.gene57134.t1 | AT3G25440 | 33.793 | 145 | 91 | 2 | 555 | 697 | 18 | 159 | 7.45e-20 | 91.7 |
MS.gene57134.t1 | AT3G27550 | 34.286 | 140 | 89 | 1 | 555 | 694 | 144 | 280 | 2.84e-14 | 77.4 |
MS.gene57134.t1 | AT3G27550 | 34.286 | 140 | 89 | 1 | 555 | 694 | 88 | 224 | 4.65e-14 | 76.3 |
MS.gene57134.t1 | AT3G27550 | 34.286 | 140 | 89 | 1 | 555 | 694 | 88 | 224 | 4.65e-14 | 76.3 |
MS.gene57134.t1 | AT2G20020 | 31.111 | 90 | 62 | 0 | 154 | 243 | 243 | 332 | 8.41e-12 | 69.7 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTGAGGTTGAGGGAATT+AGG | 0.168833 | 6.2:-4093324 | MS.gene57134:CDS |
CATCGATCACATCATTTAAA+AGG | 0.172244 | 6.2:-4085559 | MS.gene57134:CDS |
GAAAAGGACTCATGATATTT+TGG | 0.212204 | 6.2:-4093169 | MS.gene57134:CDS |
TGCATCTTCATTGGAAATAT+CGG | 0.239449 | 6.2:-4089036 | MS.gene57134:CDS |
CTTCTACCTGCCGTTATTCC+TGG | 0.240780 | 6.2:-4091244 | MS.gene57134:CDS |
AGTGAATTTAGAAGGGGTTT+TGG | 0.243972 | 6.2:+4093725 | None:intergenic |
GGCGAAGATCGGAAGTTGTT+AGG | 0.257970 | 6.2:-4093224 | MS.gene57134:CDS |
TGAAATGAAGCAGAAGATTA+AGG | 0.268446 | 6.2:-4093298 | MS.gene57134:CDS |
CTGCTGCAATTATCAAGTTC+TGG | 0.285300 | 6.2:-4090775 | MS.gene57134:CDS |
CTAGCAAAATCATACTTTAC+AGG | 0.287174 | 6.2:-4084682 | MS.gene57134:CDS |
TATTGAGGTTGAGGGAATTA+GGG | 0.304969 | 6.2:-4093323 | MS.gene57134:CDS |
CTGCCGTTATTCCTGGATTT+AGG | 0.310245 | 6.2:-4091237 | MS.gene57134:CDS |
GCTTTAGCCTTCATCAATAA+TGG | 0.310457 | 6.2:+4089513 | None:intergenic |
GTGTCAACAGAAGCTTCTTC+TGG | 0.319220 | 6.2:+4086218 | None:intergenic |
GGGTCTTGGGCCTCGATTTA+CGG | 0.321095 | 6.2:-4091305 | MS.gene57134:CDS |
AGTGATTCTGTGGTTGATAC+TGG | 0.322957 | 6.2:-4085614 | MS.gene57134:CDS |
TCCACCACTTTCTGTCTCTA+AGG | 0.329922 | 6.2:+4088952 | None:intergenic |
ATGCGTTGAATGGCGGAATC+AGG | 0.330238 | 6.2:+4093669 | None:intergenic |
GAATACTAGCAATAAGAAAA+TGG | 0.340852 | 6.2:-4090708 | MS.gene57134:CDS |
GTAACGGAAGGGATTGTTAA+TGG | 0.344102 | 6.2:-4093261 | MS.gene57134:CDS |
CAAACTGACCCAATGCAAAA+TGG | 0.346760 | 6.2:+4091122 | None:intergenic |
AAGAAGAAGTCTCTCTCTAT+TGG | 0.347927 | 6.2:+4085466 | None:intergenic |
GAAAATGGCTGAAGAGATTA+AGG | 0.347940 | 6.2:-4090693 | MS.gene57134:intron |
AAACTGGAGGACTTGTTGTT+TGG | 0.357673 | 6.2:-4091627 | MS.gene57134:CDS |
GGAGGATTGGTCGGTGGTTG+TGG | 0.357796 | 6.2:+4093614 | None:intergenic |
GTCATGTGATACCTCTAGTA+TGG | 0.357973 | 6.2:+4084844 | None:intergenic |
TCAAAGGACTAGCATCAAAT+TGG | 0.359072 | 6.2:-4089484 | MS.gene57134:CDS |
GTGTGACCGACGCGGTGTTT+TGG | 0.361433 | 6.2:+4093519 | None:intergenic |
ACCAAACCAGTCAAGGATTC+TGG | 0.364173 | 6.2:+4086131 | None:intergenic |
AGATACATGTTGCGGAGAAT+TGG | 0.365846 | 6.2:-4089270 | MS.gene57134:CDS |
GGACTTGTTGTTTGGAGATC+TGG | 0.366719 | 6.2:-4091619 | MS.gene57134:CDS |
GTGCGAATAGTGAATTTAGA+AGG | 0.368749 | 6.2:+4093717 | None:intergenic |
TTTGGGAGTGTGTGTGGTAA+TGG | 0.369886 | 6.2:+4093537 | None:intergenic |
GAGAAGAGGAGGAGGAGGAT+TGG | 0.380979 | 6.2:+4093601 | None:intergenic |
ATCACCGGAGCTGATGGTTC+AGG | 0.381083 | 6.2:+4085533 | None:intergenic |
GAAGTTATTGTCATTTATAG+AGG | 0.384386 | 6.2:-4089696 | MS.gene57134:CDS |
AATCATACTTTACAGGGGTT+GGG | 0.391181 | 6.2:-4084675 | MS.gene57134:CDS |
GATTTCACCGGCGGTGGTGG+AGG | 0.394187 | 6.2:+4093566 | None:intergenic |
TTGACATTAACTATGACAAA+AGG | 0.394366 | 6.2:+4084905 | None:intergenic |
ACAGCTTGTTAGAGGGTCTT+GGG | 0.397641 | 6.2:-4091318 | MS.gene57134:CDS |
TGGCGGAATCAGGGAGGGTG+TGG | 0.399987 | 6.2:+4093679 | None:intergenic |
TGACGGATGGAGAGATATTG+AGG | 0.403123 | 6.2:-4093338 | MS.gene57134:CDS |
TTCACCGGCGGTGGTGGAGG+TGG | 0.404311 | 6.2:+4093569 | None:intergenic |
GGAAGGAGAAGAGGAGGAGG+AGG | 0.404434 | 6.2:+4093596 | None:intergenic |
GACAGCTTGTTAGAGGGTCT+TGG | 0.404713 | 6.2:-4091319 | MS.gene57134:CDS |
CTGAACTCATTTCAGATGAA+TGG | 0.405516 | 6.2:+4091464 | None:intergenic |
CTGGAGGAACTCTCCTTTCT+CGG | 0.406258 | 6.2:-4089725 | MS.gene57134:CDS |
GGCGGTGGTGGAGGTGGTGG+TGG | 0.408197 | 6.2:+4093575 | None:intergenic |
ACCAGAATCCTTGACTGGTT+TGG | 0.410370 | 6.2:-4086132 | MS.gene57134:CDS |
TTGGGCCTCGATTTACGGAT+TGG | 0.412165 | 6.2:-4091300 | MS.gene57134:CDS |
ATCATACTTTACAGGGGTTG+GGG | 0.417270 | 6.2:-4084674 | MS.gene57134:CDS |
TAACTTCTTTATTCCGAGAA+AGG | 0.417396 | 6.2:+4089712 | None:intergenic |
TGGAAAATATGCATCTTCAT+TGG | 0.418682 | 6.2:-4089045 | MS.gene57134:CDS |
GTTCGCGGCCTCAAACTATC+AGG | 0.418831 | 6.2:+4088857 | None:intergenic |
AAATCATACTTTACAGGGGT+TGG | 0.420723 | 6.2:-4084676 | MS.gene57134:CDS |
AGTTGAAATCTCACTCTATT+GGG | 0.420829 | 6.2:+4091373 | None:intergenic |
CAGTTGAAATCTCACTCTAT+TGG | 0.422620 | 6.2:+4091372 | None:intergenic |
TGGAGAAGAAGGAGTGAAGA+AGG | 0.422800 | 6.2:+4093770 | None:intergenic |
TTGTTTGTGAGGATCTTTGT+AGG | 0.425480 | 6.2:-4093200 | MS.gene57134:CDS |
GTGGTGGAGGTGGTGGTGGA+AGG | 0.427520 | 6.2:+4093579 | None:intergenic |
GATAGCTAAAGAGTTGAGAT+TGG | 0.428612 | 6.2:-4087314 | MS.gene57134:CDS |
ACCGGCGGTGGTGGAGGTGG+TGG | 0.429927 | 6.2:+4093572 | None:intergenic |
AGAAGTAGACAGCTTGTTAG+AGG | 0.433202 | 6.2:-4091326 | MS.gene57134:CDS |
AATGTCAAAGGAAGGGCAAA+AGG | 0.433490 | 6.2:-4084890 | MS.gene57134:CDS |
GCCTCGATTTACGGATTGGT+GGG | 0.436445 | 6.2:-4091296 | MS.gene57134:CDS |
ACTTCATCTGATAGGAAGTA+AGG | 0.436466 | 6.2:+4091556 | None:intergenic |
TTCTTCGAAAGCAGGCCTTA+AGG | 0.441085 | 6.2:-4085448 | MS.gene57134:CDS |
CCTGCGCCAACTAGAGGAAC+TGG | 0.442152 | 6.2:+4093465 | None:intergenic |
GGGAAGAAGAATGGAGAAGA+AGG | 0.442675 | 6.2:+4093759 | None:intergenic |
GGTGGTGGTGGAAGGAGAAG+AGG | 0.443715 | 6.2:+4093587 | None:intergenic |
TTTGTAGGATTAATATGAAA+AGG | 0.447738 | 6.2:-4093185 | MS.gene57134:CDS |
TGCTGCAATTATCAAGTTCT+GGG | 0.447827 | 6.2:-4090774 | MS.gene57134:CDS |
GGCCTCGATTTACGGATTGG+TGG | 0.450180 | 6.2:-4091297 | MS.gene57134:CDS |
GAAGATTTCACCGGCGGTGG+TGG | 0.450854 | 6.2:+4093563 | None:intergenic |
TGAAGTTGAGAGAGCGCGAT+TGG | 0.453856 | 6.2:-4093421 | MS.gene57134:CDS |
TCATACTTGCAGGAAGAAAC+AGG | 0.453882 | 6.2:-4084728 | MS.gene57134:intron |
GAGACTTCTTCTTCGAAAGC+AGG | 0.454007 | 6.2:-4085456 | MS.gene57134:CDS |
CAACAGCTCGGGAGAGACAT+TGG | 0.454241 | 6.2:+4084586 | None:intergenic |
ATGGAGAGATATTGAGGTTG+AGG | 0.454353 | 6.2:-4093332 | MS.gene57134:CDS |
GCGAAGATCGGAAGTTGTTA+GGG | 0.455239 | 6.2:-4093223 | MS.gene57134:CDS |
AGCTTAGACTGCACACCATA+TGG | 0.457604 | 6.2:+4091196 | None:intergenic |
CAAAACCGTAAAACCAGCTT+TGG | 0.460882 | 6.2:-4091413 | MS.gene57134:CDS |
CTCTCAAAACTTCATCTGAT+AGG | 0.461751 | 6.2:+4091548 | None:intergenic |
TGAACTCATTTCAGATGAAT+GGG | 0.464393 | 6.2:+4091465 | None:intergenic |
TCTCTAAGGTCCGAGCTGTC+TGG | 0.464740 | 6.2:+4088966 | None:intergenic |
CGAAAAGGCGGCCTAAATCC+AGG | 0.465890 | 6.2:+4091226 | None:intergenic |
AGAGGAGGAGGAGGATTGGT+CGG | 0.467084 | 6.2:+4093605 | None:intergenic |
TCCATGTGCTGCTCTTGTAT+AGG | 0.468315 | 6.2:+4086188 | None:intergenic |
AACAGCTCGGGAGAGACATT+GGG | 0.469810 | 6.2:+4084587 | None:intergenic |
AAGATTAAGGTTGGAAAAGC+CGG | 0.471265 | 6.2:-4093285 | MS.gene57134:CDS |
TCATGAACGTTGGCGAAGAT+CGG | 0.472568 | 6.2:-4093235 | MS.gene57134:CDS |
GGTGGAAGGAGAAGAGGAGG+AGG | 0.473495 | 6.2:+4093593 | None:intergenic |
GCCGAGGGAATGGAGTTTAT+CGG | 0.474964 | 6.2:+4093644 | None:intergenic |
AGAACAAGAAATAGATAAAG+AGG | 0.476169 | 6.2:-4089310 | MS.gene57134:CDS |
ATCGATCACATCATTTAAAA+GGG | 0.476446 | 6.2:-4085558 | MS.gene57134:CDS |
AGGTGCAGTTCTAGTCTCTC+AGG | 0.478325 | 6.2:-4084708 | MS.gene57134:CDS |
GGCGAAGGAGAAGGAGAGGA+AGG | 0.479267 | 6.2:-4093400 | MS.gene57134:CDS |
GTCACACACTCGACCTCAGC+TGG | 0.480545 | 6.2:-4093503 | MS.gene57134:CDS |
CAATGTCTCTCCCGAGCTGT+TGG | 0.483076 | 6.2:-4084585 | MS.gene57134:CDS |
CTTCAGCAATTAAACAGAGA+TGG | 0.483872 | 6.2:-4089647 | MS.gene57134:CDS |
ATTGAACTCTTATTTATCAC+CGG | 0.484670 | 6.2:+4085518 | None:intergenic |
AGAAGGAGAGGAAGGAGAAG+AGG | 0.485180 | 6.2:-4093392 | MS.gene57134:CDS |
ATCACACCAACTCAATTCAT+AGG | 0.485832 | 6.2:-4084637 | MS.gene57134:CDS |
GGTAGAAGATCAGCATCAAC+AGG | 0.486170 | 6.2:+4091259 | None:intergenic |
TAAAGAGTTGAGATTGGACT+TGG | 0.494978 | 6.2:-4087308 | MS.gene57134:intron |
ATGAGTTCAGCCACACATGC+TGG | 0.496048 | 6.2:-4091451 | MS.gene57134:CDS |
TGAGAGAGCGCGATTGGCGA+AGG | 0.496079 | 6.2:-4093415 | MS.gene57134:CDS |
ATGAAGCAGAAGATTAAGGT+TGG | 0.496298 | 6.2:-4093294 | MS.gene57134:CDS |
TGGTGGTGATGCCGAGGGAA+TGG | 0.497355 | 6.2:+4093634 | None:intergenic |
GCATCTTCATTGGAAATATC+GGG | 0.497692 | 6.2:-4089035 | MS.gene57134:CDS |
AGATTCTGAAAGAAAGCATA+TGG | 0.497996 | 6.2:-4089568 | MS.gene57134:CDS |
TCTAAAAGCTCTGCTTCACC+TGG | 0.499634 | 6.2:+4091349 | None:intergenic |
GGTAGAAATAGGAAACTTCA+AGG | 0.499968 | 6.2:-4090803 | MS.gene57134:CDS |
TGACATTAACTATGACAAAA+GGG | 0.500828 | 6.2:+4084906 | None:intergenic |
TGGAGAGATATTGAGGTTGA+GGG | 0.503341 | 6.2:-4093331 | MS.gene57134:CDS |
CTCGATTTACGGATTGGTGG+GGG | 0.505895 | 6.2:-4091294 | MS.gene57134:CDS |
AAATGAATTGAAACATCAAA+TGG | 0.509714 | 6.2:-4087446 | MS.gene57134:intron |
GGTGGTGGAAGGAGAAGAGG+AGG | 0.513184 | 6.2:+4093590 | None:intergenic |
TTTATCGGCGATGCGTTGAA+TGG | 0.515612 | 6.2:+4093659 | None:intergenic |
CATAGGAGAGTAGCTAAATA+CGG | 0.516239 | 6.2:-4084620 | MS.gene57134:CDS |
AGCATTGAAGCGTTCAATAG+AGG | 0.519294 | 6.2:-4088816 | MS.gene57134:CDS |
TGCGAATAGTGAATTTAGAA+GGG | 0.519533 | 6.2:+4093718 | None:intergenic |
GAGCAGCACATGGAGCTGAT+TGG | 0.520701 | 6.2:-4086179 | MS.gene57134:CDS |
TCATAGTTAATGTCAAAGGA+AGG | 0.520961 | 6.2:-4084898 | MS.gene57134:CDS |
AAATGAAAAGGGAAGAAGAA+TGG | 0.521022 | 6.2:+4093750 | None:intergenic |
GTAAAATAATATTGTACAGA+GGG | 0.522135 | 6.2:-4091594 | MS.gene57134:CDS |
CGGCCTAAATCCAGGAATAA+CGG | 0.522622 | 6.2:+4091234 | None:intergenic |
CTGATAGCTTCCAACAGCTC+GGG | 0.523131 | 6.2:+4084575 | None:intergenic |
AAGGTGTTGAAGTTAGTCGT+TGG | 0.523365 | 6.2:+4093789 | None:intergenic |
AGATCAGCATCAACAGGCAC+AGG | 0.523762 | 6.2:+4091265 | None:intergenic |
TTTGGTTCATCAAGAAAGAC+AGG | 0.524182 | 6.2:-4086114 | MS.gene57134:intron |
TTATTTATCACCGGAGCTGA+TGG | 0.525169 | 6.2:+4085527 | None:intergenic |
GTAAAACCAGCTTTGGTACA+AGG | 0.526612 | 6.2:-4091406 | MS.gene57134:CDS |
CCGACTCCTTGTACCAAAGC+TGG | 0.527389 | 6.2:+4091400 | None:intergenic |
AAAGTCACCTAGCAACAAGA+AGG | 0.528235 | 6.2:+4089233 | None:intergenic |
AGTAAAATAATATTGTACAG+AGG | 0.529007 | 6.2:-4091595 | MS.gene57134:CDS |
CCATATGGAAGTAGGCGAAA+AGG | 0.529103 | 6.2:+4091211 | None:intergenic |
TGTCTCAACTAACAATGCTA+TGG | 0.529253 | 6.2:-4085585 | MS.gene57134:CDS |
GGATTGGTCGGTGGTTGTGG+TGG | 0.531621 | 6.2:+4093617 | None:intergenic |
AACAATCCCTTCCGTTACAC+CGG | 0.534935 | 6.2:+4093266 | None:intergenic |
GAGAATCCAGTTCCTCTAGT+TGG | 0.535200 | 6.2:-4093471 | MS.gene57134:CDS |
TTTGTCATAGTTAATGTCAA+AGG | 0.536638 | 6.2:-4084902 | MS.gene57134:CDS |
AGCGCGATTGGCGAAGGAGA+AGG | 0.537283 | 6.2:-4093409 | MS.gene57134:CDS |
GTGATTCTGTGGTTGATACT+GGG | 0.538615 | 6.2:-4085613 | MS.gene57134:CDS |
ACTAGAGGAACTGGATTCTC+CGG | 0.538677 | 6.2:+4093474 | None:intergenic |
TACTCTCCTATGAATTGAGT+TGG | 0.539529 | 6.2:+4084631 | None:intergenic |
TGCGTTGAATGGCGGAATCA+GGG | 0.541195 | 6.2:+4093670 | None:intergenic |
AGTTGTTAGGGTTGTTTGTG+AGG | 0.543015 | 6.2:-4093211 | MS.gene57134:CDS |
TATTGTCATTTATAGAGGAA+AGG | 0.543212 | 6.2:-4089691 | MS.gene57134:CDS |
TTGATGAACCAAACCAGTCA+AGG | 0.544186 | 6.2:+4086124 | None:intergenic |
AGGGACCTCAGTTCATGAGT+TGG | 0.544574 | 6.2:-4084870 | MS.gene57134:CDS |
AAGGAAGATTTCACCGGCGG+TGG | 0.548680 | 6.2:+4093560 | None:intergenic |
ACTTCTCTGCAGTATCTGAC+TGG | 0.549377 | 6.2:-4089744 | MS.gene57134:intron |
TCTGATAGCTTCCAACAGCT+CGG | 0.550305 | 6.2:+4084574 | None:intergenic |
TTAATGGAATTCATGAACGT+TGG | 0.550433 | 6.2:-4093245 | MS.gene57134:CDS |
TTTAGCGGAATTGAGTTTGA+CGG | 0.550499 | 6.2:-4093355 | MS.gene57134:CDS |
CCTCGATTTACGGATTGGTG+GGG | 0.551032 | 6.2:-4091295 | MS.gene57134:CDS |
AATATGTAATCAAGAAAGTG+TGG | 0.551485 | 6.2:-4088999 | MS.gene57134:CDS |
CATACTTTACAGGGGTTGGG+GGG | 0.552890 | 6.2:-4084672 | MS.gene57134:CDS |
CACATGGAGCTGATTGGTAG+TGG | 0.553378 | 6.2:-4086173 | MS.gene57134:CDS |
ATTGCTGAAGAAACTGCAGC+AGG | 0.553692 | 6.2:+4089660 | None:intergenic |
GGATCCTGAACCATCAGCTC+CGG | 0.554597 | 6.2:-4085537 | MS.gene57134:CDS |
AGAGTGAGATTTCAACTGCC+AGG | 0.554712 | 6.2:-4091367 | MS.gene57134:CDS |
CCAGTTCCTCTAGTTGGCGC+AGG | 0.554852 | 6.2:-4093465 | MS.gene57134:CDS |
CTAAGGTCCGAGCTGTCTGG+TGG | 0.556862 | 6.2:+4088969 | None:intergenic |
GGAAAGAGCAATATTGTGAC+TGG | 0.557399 | 6.2:-4084965 | MS.gene57134:CDS |
TAGCAAAATCATACTTTACA+GGG | 0.557524 | 6.2:-4084681 | MS.gene57134:CDS |
TCATACTTTACAGGGGTTGG+GGG | 0.558023 | 6.2:-4084673 | MS.gene57134:CDS |
TCGAGTCCTGCGCCAACTAG+AGG | 0.558107 | 6.2:+4093459 | None:intergenic |
TGAGTTGGTTTCCATACTAG+AGG | 0.558428 | 6.2:-4084855 | MS.gene57134:intron |
ATTATACCTATGGGAACGAT+AGG | 0.558625 | 6.2:+4085413 | None:intergenic |
ATCGGCGATGCGTTGAATGG+CGG | 0.560791 | 6.2:+4093662 | None:intergenic |
ACCACCACCTCCACCACCGC+CGG | 0.561745 | 6.2:-4093573 | MS.gene57134:CDS |
GAAGAGAGTACCGACTTTAG+CGG | 0.563105 | 6.2:-4093370 | MS.gene57134:CDS |
GACTAGCATCAAATTGGCAC+AGG | 0.563794 | 6.2:-4089478 | MS.gene57134:intron |
GGTGAACCAGAATCCTTGAC+TGG | 0.564015 | 6.2:-4086137 | MS.gene57134:CDS |
ATGAAGCCCTTCTTGTTGCT+AGG | 0.564414 | 6.2:-4089240 | MS.gene57134:intron |
AGCAGTAGAGAGAGTGCACA+AGG | 0.564911 | 6.2:-4088921 | MS.gene57134:CDS |
TGGTTGTGGTGGTGATGCCG+AGG | 0.566651 | 6.2:+4093628 | None:intergenic |
CAATATTGTGACTGGTGTTG+TGG | 0.567080 | 6.2:-4084957 | MS.gene57134:CDS |
TGAACTTTGTCCAGCATGTG+TGG | 0.567125 | 6.2:+4091441 | None:intergenic |
GGAGGAGGAGGATTGGTCGG+TGG | 0.569982 | 6.2:+4093608 | None:intergenic |
CTTAATTATCAGGAAGACGA+GGG | 0.570502 | 6.2:-4089084 | MS.gene57134:intron |
ATAGTAGGCCTGATAGTTTG+AGG | 0.572925 | 6.2:-4088865 | MS.gene57134:CDS |
AGGCTAAAGCAGCTATTCAA+AGG | 0.574781 | 6.2:-4089500 | MS.gene57134:CDS |
GGAAAAGCCGGTGTAACGGA+AGG | 0.576127 | 6.2:-4093273 | MS.gene57134:CDS |
ATGTCAAAGGAAGGGCAAAA+GGG | 0.576733 | 6.2:-4084889 | MS.gene57134:CDS |
GAGGGTGTGGGAATTAGAAG+AGG | 0.578823 | 6.2:+4093692 | None:intergenic |
GGTTGGAAAAGCCGGTGTAA+CGG | 0.579572 | 6.2:-4093277 | MS.gene57134:CDS |
ATGACCACATTGAAGAGACT+TGG | 0.585752 | 6.2:-4091160 | MS.gene57134:CDS |
GCGGAATTGAGTTTGACGGA+TGG | 0.586016 | 6.2:-4093351 | MS.gene57134:CDS |
GCCGATAAACTCCATTCCCT+CGG | 0.587010 | 6.2:-4093645 | MS.gene57134:CDS |
GGTTGTGGTGGTGATGCCGA+GGG | 0.587202 | 6.2:+4093629 | None:intergenic |
TCTCCGGTGTGCTCCAGCTG+AGG | 0.587807 | 6.2:+4093490 | None:intergenic |
CTAAATCCAGGAATAACGGC+AGG | 0.590887 | 6.2:+4091238 | None:intergenic |
GGCGGAATCAGGGAGGGTGT+GGG | 0.593012 | 6.2:+4093680 | None:intergenic |
GAAGTAGACAGCTTGTTAGA+GGG | 0.594691 | 6.2:-4091325 | MS.gene57134:CDS |
CATAGTTAATGTCAAAGGAA+GGG | 0.599927 | 6.2:-4084897 | MS.gene57134:CDS |
ACCTATACAAGAGCAGCACA+TGG | 0.601422 | 6.2:-4086189 | MS.gene57134:CDS |
AAACTCAATTCCGCTAAAGT+CGG | 0.604156 | 6.2:+4093360 | None:intergenic |
GGTGTGGGAATTAGAAGAGG+AGG | 0.604178 | 6.2:+4093695 | None:intergenic |
ACTGCACACCATATGGAAGT+AGG | 0.605649 | 6.2:+4091203 | None:intergenic |
AAGTCACCTAGCAACAAGAA+GGG | 0.606277 | 6.2:+4089234 | None:intergenic |
TGGTGTTGTGGAAACAATCA+AGG | 0.607238 | 6.2:-4084945 | MS.gene57134:CDS |
AAGCAACCTATCGTTCCCAT+AGG | 0.607489 | 6.2:-4085419 | MS.gene57134:intron |
GATTGGCGAAGGAGAAGGAG+AGG | 0.610415 | 6.2:-4093404 | MS.gene57134:CDS |
ATGGAGCTGATTGGTAGTGG+TGG | 0.611940 | 6.2:-4086170 | MS.gene57134:CDS |
GAACAAGAAATAGATAAAGA+GGG | 0.613399 | 6.2:-4089309 | MS.gene57134:CDS |
TAATGGAAGGAAGATTTCAC+CGG | 0.614501 | 6.2:+4093554 | None:intergenic |
TGGTGTGCAGTCTAAGCTAA+CGG | 0.614716 | 6.2:-4091191 | MS.gene57134:CDS |
GCGAATAGTGAATTTAGAAG+GGG | 0.614784 | 6.2:+4093719 | None:intergenic |
AAATAGGAAACTTCAAGGAG+TGG | 0.617096 | 6.2:-4090798 | MS.gene57134:CDS |
TAAGGTCCGAGCTGTCTGGT+GGG | 0.620424 | 6.2:+4088970 | None:intergenic |
AATATGCCCACCAGACAGCT+CGG | 0.621653 | 6.2:-4088976 | MS.gene57134:CDS |
ATCGTGGAAAGAATTATAGT+AGG | 0.621723 | 6.2:-4088880 | MS.gene57134:CDS |
CGACCTCAGCTGGAGCACAC+CGG | 0.626838 | 6.2:-4093493 | MS.gene57134:CDS |
CGGACCTTAGAGACAGAAAG+TGG | 0.629206 | 6.2:-4088956 | MS.gene57134:CDS |
GAAGCTATCAGAATTGAATG+TGG | 0.631056 | 6.2:-4084563 | MS.gene57134:CDS |
TTGAATGGCGGAATCAGGGA+GGG | 0.632430 | 6.2:+4093674 | None:intergenic |
TGACCCAATGCAAAATGGCA+TGG | 0.633048 | 6.2:+4091127 | None:intergenic |
TATGCGATCATTGTTTATCG+TGG | 0.634171 | 6.2:-4088896 | MS.gene57134:CDS |
TCTTAATTATCAGGAAGACG+AGG | 0.640344 | 6.2:-4089085 | MS.gene57134:intron |
GGATGAAGTGAGTGATTCTG+TGG | 0.645028 | 6.2:-4085624 | MS.gene57134:CDS |
GATCAGCATCAACAGGCACA+GGG | 0.653119 | 6.2:+4091266 | None:intergenic |
AAGAAGAGAGATACATGTTG+CGG | 0.658097 | 6.2:-4089278 | MS.gene57134:CDS |
AGCAAAATCATACTTTACAG+GGG | 0.658465 | 6.2:-4084680 | MS.gene57134:CDS |
GAAAAGCCGGTGTAACGGAA+GGG | 0.660273 | 6.2:-4093272 | MS.gene57134:CDS |
GGAGTGTGTGTGGTAATGGA+AGG | 0.664230 | 6.2:+4093541 | None:intergenic |
CCAGCTTTGGTACAAGGAGT+CGG | 0.664643 | 6.2:-4091400 | MS.gene57134:CDS |
ACCTTAGAGACAGAAAGTGG+TGG | 0.665098 | 6.2:-4088953 | MS.gene57134:CDS |
TATGGAAGTAGGCGAAAAGG+CGG | 0.665566 | 6.2:+4091214 | None:intergenic |
CCCCACCAATCCGTAAATCG+AGG | 0.666641 | 6.2:+4091295 | None:intergenic |
TGGAAGGAAGATTTCACCGG+CGG | 0.676532 | 6.2:+4093557 | None:intergenic |
GGTAGTGGTGGAGAATGTCA+AGG | 0.680634 | 6.2:-4086158 | MS.gene57134:CDS |
AATAGAGGCACAACGCCGTG+AGG | 0.680846 | 6.2:-4088801 | MS.gene57134:intron |
TTAATTATCAGGAAGACGAG+GGG | 0.682549 | 6.2:-4089083 | MS.gene57134:intron |
TCTCTGCAGTATCTGACTGG+AGG | 0.686060 | 6.2:-4089741 | MS.gene57134:intron |
ACACTCCCAAAACACCGCGT+CGG | 0.694080 | 6.2:-4093525 | MS.gene57134:CDS |
AGGAGAGTAGCTAAATACGG+AGG | 0.698681 | 6.2:-4084617 | MS.gene57134:CDS |
TCTGCCAAGTCTCTTCAATG+TGG | 0.705419 | 6.2:+4091156 | None:intergenic |
GTTGAATGGCGGAATCAGGG+AGG | 0.715019 | 6.2:+4093673 | None:intergenic |
GGAAACCAACTCATGAACTG+AGG | 0.716010 | 6.2:+4084865 | None:intergenic |
GCAGTAGAGAGAGTGCACAA+GGG | 0.717322 | 6.2:-4088920 | MS.gene57134:CDS |
GGTCGAGTGTGTGACCGACG+CGG | 0.738550 | 6.2:+4093511 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 4084553 | 4093820 | 4084553 | ID=MS.gene57134 |
chr6.2 | mRNA | 4084553 | 4093820 | 4084553 | ID=MS.gene57134.t1;Parent=MS.gene57134 |
chr6.2 | exon | 4093167 | 4093820 | 4093167 | ID=MS.gene57134.t1.exon1;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4093167 | 4093820 | 4093167 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4091131 | 4091653 | 4091131 | ID=MS.gene57134.t1.exon2;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4091131 | 4091653 | 4091131 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4090694 | 4090824 | 4090694 | ID=MS.gene57134.t1.exon3;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4090694 | 4090824 | 4090694 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4089479 | 4089754 | 4089479 | ID=MS.gene57134.t1.exon4;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4089479 | 4089754 | 4089479 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4089241 | 4089397 | 4089241 | ID=MS.gene57134.t1.exon5;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4089241 | 4089397 | 4089241 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4088802 | 4089094 | 4088802 | ID=MS.gene57134.t1.exon6;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4088802 | 4089094 | 4088802 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4087447 | 4087506 | 4087447 | ID=MS.gene57134.t1.exon7;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4087447 | 4087506 | 4087447 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4087309 | 4087362 | 4087309 | ID=MS.gene57134.t1.exon8;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4087309 | 4087362 | 4087309 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4086115 | 4086255 | 4086115 | ID=MS.gene57134.t1.exon9;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4086115 | 4086255 | 4086115 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4085420 | 4085648 | 4085420 | ID=MS.gene57134.t1.exon10;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4085420 | 4085648 | 4085420 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4084856 | 4084986 | 4084856 | ID=MS.gene57134.t1.exon11;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4084856 | 4084986 | 4084856 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
chr6.2 | exon | 4084553 | 4084738 | 4084553 | ID=MS.gene57134.t1.exon12;Parent=MS.gene57134.t1 |
chr6.2 | CDS | 4084553 | 4084738 | 4084553 | ID=cds.MS.gene57134.t1;Parent=MS.gene57134.t1 |
Gene Sequence |
Protein sequence |