Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57364.t1 | XP_013456242.1 | 97.1 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.00E+00 | 1817 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57364.t1 | O24370 | 62.8 | 858 | 304 | 7 | 52 | 906 | 54 | 899 | 0.0e+00 | 1124.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57364.t1 | A0A072UMH4 | 97.1 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.0e+00 | 1817.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050502 | MS.gene57364 | 0.859122 | 5.14E-63 | -1.69E-46 |
MS.gene052346 | MS.gene57364 | 0.872526 | 2.97E-67 | -1.69E-46 |
MS.gene053318 | MS.gene57364 | 0.821404 | 4.11E-53 | -1.69E-46 |
MS.gene053436 | MS.gene57364 | 0.82866 | 7.95E-55 | -1.69E-46 |
MS.gene055909 | MS.gene57364 | 0.833691 | 4.61E-56 | -1.69E-46 |
MS.gene055911 | MS.gene57364 | 0.839757 | 1.31E-57 | -1.69E-46 |
MS.gene056346 | MS.gene57364 | 0.988084 | 1.19E-172 | -1.69E-46 |
MS.gene056514 | MS.gene57364 | 0.808193 | 3.49E-50 | -1.69E-46 |
MS.gene059303 | MS.gene57364 | 0.820685 | 6.02E-53 | -1.69E-46 |
MS.gene059517 | MS.gene57364 | 0.828737 | 7.61E-55 | -1.69E-46 |
MS.gene060372 | MS.gene57364 | 0.80398 | 2.69E-49 | -1.69E-46 |
MS.gene060485 | MS.gene57364 | 0.806154 | 9.44E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57364.t1 | MTR_4g066170 | 97.130 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.0 | 1835 |
MS.gene57364.t1 | MTR_3g479460 | 60.844 | 853 | 318 | 7 | 59 | 906 | 62 | 903 | 0.0 | 1114 |
MS.gene57364.t1 | MTR_3g079450 | 59.096 | 885 | 346 | 8 | 27 | 906 | 29 | 902 | 0.0 | 1092 |
MS.gene57364.t1 | MTR_3g079420 | 62.352 | 842 | 308 | 8 | 70 | 906 | 28 | 865 | 0.0 | 1063 |
MS.gene57364.t1 | MTR_8g020970 | 48.636 | 843 | 416 | 11 | 74 | 905 | 90 | 926 | 0.0 | 824 |
MS.gene57364.t1 | MTR_8g080230 | 47.580 | 847 | 425 | 11 | 72 | 906 | 77 | 916 | 0.0 | 820 |
MS.gene57364.t1 | MTR_3g079450 | 55.696 | 632 | 265 | 7 | 27 | 653 | 29 | 650 | 0.0 | 719 |
MS.gene57364.t1 | MTR_1g104650 | 44.245 | 834 | 432 | 17 | 98 | 906 | 31 | 856 | 0.0 | 691 |
MS.gene57364.t1 | MTR_8g018420 | 44.282 | 822 | 435 | 15 | 98 | 906 | 45 | 856 | 0.0 | 677 |
MS.gene57364.t1 | MTR_8g018690 | 44.135 | 827 | 424 | 15 | 98 | 906 | 59 | 865 | 0.0 | 674 |
MS.gene57364.t1 | MTR_8g020990 | 44.214 | 821 | 437 | 13 | 98 | 906 | 57 | 868 | 0.0 | 673 |
MS.gene57364.t1 | MTR_2g099560 | 42.580 | 876 | 460 | 18 | 52 | 906 | 10 | 863 | 0.0 | 667 |
MS.gene57364.t1 | MTR_8g018510 | 43.349 | 842 | 437 | 16 | 84 | 906 | 49 | 869 | 0.0 | 666 |
MS.gene57364.t1 | MTR_2g099570 | 41.705 | 868 | 477 | 15 | 52 | 906 | 10 | 861 | 0.0 | 665 |
MS.gene57364.t1 | MTR_8g018730 | 43.489 | 837 | 442 | 15 | 85 | 906 | 44 | 864 | 0.0 | 664 |
MS.gene57364.t1 | MTR_5g024020 | 42.063 | 882 | 470 | 19 | 48 | 906 | 4 | 867 | 0.0 | 661 |
MS.gene57364.t1 | MTR_8g018570 | 42.630 | 882 | 468 | 19 | 46 | 906 | 6 | 870 | 0.0 | 660 |
MS.gene57364.t1 | MTR_1g083020 | 44.178 | 833 | 426 | 15 | 98 | 906 | 41 | 858 | 0.0 | 659 |
MS.gene57364.t1 | MTR_8g018735 | 43.256 | 823 | 438 | 14 | 99 | 906 | 57 | 865 | 0.0 | 655 |
MS.gene57364.t1 | MTR_8g018520 | 42.389 | 854 | 455 | 16 | 74 | 906 | 31 | 868 | 0.0 | 651 |
MS.gene57364.t1 | MTR_4g088810 | 43.086 | 810 | 418 | 14 | 109 | 905 | 115 | 894 | 0.0 | 648 |
MS.gene57364.t1 | MTR_8g018430 | 42.271 | 828 | 443 | 15 | 98 | 906 | 50 | 861 | 0.0 | 648 |
MS.gene57364.t1 | MTR_8g018550 | 42.694 | 876 | 470 | 18 | 48 | 906 | 8 | 868 | 0.0 | 646 |
MS.gene57364.t1 | MTR_8g018730 | 42.926 | 834 | 421 | 15 | 85 | 906 | 44 | 834 | 0.0 | 644 |
MS.gene57364.t1 | MTR_7g113410 | 42.099 | 829 | 453 | 16 | 98 | 906 | 46 | 867 | 0.0 | 637 |
MS.gene57364.t1 | MTR_8g018690 | 42.563 | 827 | 417 | 16 | 98 | 906 | 59 | 845 | 0.0 | 636 |
MS.gene57364.t1 | MTR_8g018450 | 42.663 | 811 | 421 | 15 | 102 | 906 | 56 | 828 | 0.0 | 632 |
MS.gene57364.t1 | MTR_5g024020 | 40.363 | 882 | 449 | 19 | 48 | 906 | 4 | 831 | 0.0 | 623 |
MS.gene57364.t1 | MTR_3g081130 | 39.796 | 882 | 481 | 23 | 48 | 906 | 4 | 858 | 0.0 | 605 |
MS.gene57364.t1 | MTR_3g081130 | 42.487 | 772 | 420 | 16 | 145 | 906 | 29 | 786 | 0.0 | 597 |
MS.gene57364.t1 | MTR_8g018590 | 41.585 | 820 | 429 | 16 | 106 | 906 | 35 | 823 | 0.0 | 592 |
MS.gene57364.t1 | MTR_8g018650 | 43.158 | 760 | 377 | 13 | 152 | 906 | 98 | 807 | 0.0 | 581 |
MS.gene57364.t1 | MTR_8g018620 | 42.500 | 760 | 382 | 13 | 152 | 906 | 98 | 807 | 0.0 | 576 |
MS.gene57364.t1 | MTR_8g020970 | 47.458 | 590 | 297 | 8 | 74 | 653 | 90 | 676 | 0.0 | 556 |
MS.gene57364.t1 | MTR_8g011340 | 37.437 | 796 | 452 | 18 | 106 | 872 | 55 | 833 | 1.34e-169 | 514 |
MS.gene57364.t1 | MTR_8g018730 | 45.424 | 590 | 308 | 8 | 322 | 906 | 4 | 584 | 2.74e-169 | 505 |
MS.gene57364.t1 | MTR_8g018735 | 42.105 | 570 | 304 | 12 | 99 | 653 | 57 | 615 | 6.24e-136 | 421 |
MS.gene57364.t1 | MTR_6g452500 | 35.981 | 617 | 364 | 14 | 285 | 889 | 8 | 605 | 2.39e-122 | 384 |
MS.gene57364.t1 | MTR_8g021020 | 45.476 | 420 | 222 | 5 | 490 | 906 | 16 | 431 | 1.95e-116 | 362 |
MS.gene57364.t1 | MTR_7g012030 | 68.908 | 119 | 37 | 0 | 555 | 673 | 85 | 203 | 8.67e-54 | 186 |
MS.gene57364.t1 | MTR_8g463810 | 44.000 | 225 | 62 | 3 | 465 | 689 | 197 | 357 | 5.93e-50 | 182 |
MS.gene57364.t1 | MTR_6g046330 | 62.308 | 130 | 38 | 1 | 555 | 673 | 75 | 204 | 2.91e-48 | 174 |
MS.gene57364.t1 | MTR_4g088805 | 47.253 | 91 | 47 | 1 | 816 | 905 | 1 | 91 | 4.90e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57364.t1 | AT3G45140 | 56.905 | 840 | 344 | 8 | 71 | 906 | 71 | 896 | 0.0 | 1003 |
MS.gene57364.t1 | AT3G45140 | 59.605 | 760 | 297 | 6 | 151 | 906 | 1 | 754 | 0.0 | 961 |
MS.gene57364.t1 | AT1G72520 | 48.815 | 844 | 413 | 12 | 74 | 906 | 91 | 926 | 0.0 | 833 |
MS.gene57364.t1 | AT1G17420 | 48.951 | 858 | 412 | 12 | 63 | 906 | 74 | 919 | 0.0 | 826 |
MS.gene57364.t1 | AT1G67560 | 46.416 | 851 | 428 | 14 | 72 | 906 | 79 | 917 | 0.0 | 784 |
MS.gene57364.t1 | AT1G55020 | 45.301 | 830 | 420 | 16 | 98 | 906 | 43 | 859 | 0.0 | 679 |
MS.gene57364.t1 | AT3G22400 | 43.578 | 872 | 448 | 18 | 70 | 906 | 24 | 886 | 0.0 | 677 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTTGACCCTAAAATTTA+TGG | 0.171306 | 4.4:+39976937 | MS.gene57364:CDS |
CAAATGATGGTCTTATTCTT+TGG | 0.204203 | 4.4:+39977938 | MS.gene57364:CDS |
ACAACCTCCTTTGTTTCTTT+TGG | 0.222665 | 4.4:-39970135 | None:intergenic |
CATCATGCTGCGGTGAATTT+TGG | 0.226534 | 4.4:+39978174 | MS.gene57364:CDS |
GGATAATGATGAAACCTTAT+TGG | 0.262122 | 4.4:-39973583 | None:intergenic |
ATAAAGCAAATTGTTCTTGA+TGG | 0.271031 | 4.4:+39973474 | MS.gene57364:CDS |
CTTGAAGGCACAACATTATA+TGG | 0.278755 | 4.4:+39977250 | MS.gene57364:CDS |
CGTGCAATGGCCGGTCTATT+AGG | 0.281859 | 4.4:-39978222 | None:intergenic |
TTTGAAGTACCAGGAAGTTT+TGG | 0.287906 | 4.4:+39973402 | MS.gene57364:CDS |
TTTAGGCCATGTGGGGCATT+TGG | 0.297732 | 4.4:-39977889 | None:intergenic |
TGGTTTAGGGATGAAGAATT+TGG | 0.299482 | 4.4:+39976721 | MS.gene57364:CDS |
GTAAAGACTTGCCTCCATTC+TGG | 0.301347 | 4.4:-39977358 | None:intergenic |
AGAAACAAAGGAGGTTGTTT+AGG | 0.305076 | 4.4:+39970140 | MS.gene57364:CDS |
CATTCTGGCTTTCCGCCAAT+TGG | 0.310117 | 4.4:-39977343 | None:intergenic |
CTTGGCACTCAACTGGTGTT+TGG | 0.311025 | 4.4:+39977386 | MS.gene57364:CDS |
CTTAACCTTATCAATCCTTC+TGG | 0.318156 | 4.4:-39975824 | None:intergenic |
GTTCTACAACGCCTAGGATA+TGG | 0.322916 | 4.4:-39975995 | None:intergenic |
AAATGATGGTCTTATTCTTT+GGG | 0.323159 | 4.4:+39977939 | MS.gene57364:CDS |
ACTCAACTGGTGTTTGGCTT+TGG | 0.325509 | 4.4:+39977392 | MS.gene57364:CDS |
TACCAAGAGGGAGAGTTGTT+TGG | 0.336952 | 4.4:-39977779 | None:intergenic |
ACATCAGAGCCTGGTGTAAC+AGG | 0.346010 | 4.4:+39978579 | MS.gene57364:CDS |
CAACTGGTGTTTGGCTTTGG+AGG | 0.346039 | 4.4:+39977395 | MS.gene57364:CDS |
TTTGGGATACTATCAAATCT+TGG | 0.346372 | 4.4:+39977956 | MS.gene57364:CDS |
GAACTTAAACGACCTGTTCT+TGG | 0.346682 | 4.4:+39975959 | MS.gene57364:CDS |
TTCATTGAAAAGGTCATCTA+TGG | 0.347003 | 4.4:-39976328 | None:intergenic |
TCAAAAGCAGCTTTAATCAT+TGG | 0.348931 | 4.4:-39978441 | None:intergenic |
TTGTTCAAGATGAGACAATT+TGG | 0.358818 | 4.4:-39970040 | None:intergenic |
ACCAAGAGGGAGAGTTGTTT+GGG | 0.361033 | 4.4:-39977778 | None:intergenic |
TTAAGTTCGGGATCGCTGTC+TGG | 0.374623 | 4.4:-39975944 | None:intergenic |
AAATAGTGACGACCATTGTT+TGG | 0.375344 | 4.4:+39978139 | MS.gene57364:CDS |
CTGTTTGTTGCTATAATGTA+AGG | 0.375603 | 4.4:-39977628 | None:intergenic |
CCTCTATGAATGAGGTCATT+TGG | 0.378176 | 4.4:-39977850 | None:intergenic |
ATCCAACATGAAAACATGTT+TGG | 0.381038 | 4.4:-39970090 | None:intergenic |
TTGTGGAAAATGAGCATAGA+AGG | 0.384517 | 4.4:+39973442 | MS.gene57364:CDS |
ACCATTGTTTGGATTACATC+GGG | 0.389981 | 4.4:+39978150 | MS.gene57364:CDS |
TGGCAGAGGACAGATTCTTT+TGG | 0.392055 | 4.4:+39976701 | MS.gene57364:intron |
TATCCTAGGCGTTGTAGAAC+TGG | 0.394768 | 4.4:+39975998 | MS.gene57364:CDS |
GGAATGCTAATATGAAGTTC+AGG | 0.395431 | 4.4:+39978511 | MS.gene57364:CDS |
TCTCAAATAGAGACACTATA+TGG | 0.403294 | 4.4:-39978612 | None:intergenic |
AAGAACAGGTCGTTTAAGTT+CGG | 0.403315 | 4.4:-39975957 | None:intergenic |
CCAATATCTCCAAAACTTCC+TGG | 0.404847 | 4.4:-39973411 | None:intergenic |
CACTTCAACAATGTAACTTC+CGG | 0.406092 | 4.4:-39978303 | None:intergenic |
TTGGGATACTATCAAATCTT+GGG | 0.406679 | 4.4:+39977957 | MS.gene57364:CDS |
ACACCTACTTGGCACTCAAC+TGG | 0.407754 | 4.4:+39977379 | MS.gene57364:CDS |
GTTCTTGATGGCTTTCTCAC+TGG | 0.412239 | 4.4:+39973486 | MS.gene57364:CDS |
ATCATCAGGGTTGTCATGCT+TGG | 0.413714 | 4.4:-39973544 | None:intergenic |
CTGTGTTGCCAAGGTTGGTC+AGG | 0.418531 | 4.4:+39976394 | MS.gene57364:CDS |
TGATGACATAACCGATTTGT+TGG | 0.420284 | 4.4:+39970306 | MS.gene57364:CDS |
GTTGGGTAAATCAATTCTCT+TGG | 0.421329 | 4.4:+39970324 | MS.gene57364:CDS |
AAAGTTTAAAGGGAGGTTGA+TGG | 0.425696 | 4.4:+39978464 | MS.gene57364:CDS |
GGAAGACCTCGTTGCGATAC+AGG | 0.429976 | 4.4:+39976019 | MS.gene57364:CDS |
ATAAGACCATCATTTGCATA+AGG | 0.432398 | 4.4:-39977931 | None:intergenic |
AAAATGACCCTCTTATCATC+AGG | 0.437774 | 4.4:-39973558 | None:intergenic |
TAATCCTTGTTGCATCCAAT+TGG | 0.438384 | 4.4:+39976765 | MS.gene57364:CDS |
AAGCCATGTCTCCATGGTAT+TGG | 0.449477 | 4.4:+39970061 | MS.gene57364:CDS |
TGTTCTTTGCCACCAAGAAC+AGG | 0.450316 | 4.4:-39975971 | None:intergenic |
GAGTTAGCTCGGCCGCCAAT+TGG | 0.451009 | 4.4:+39977328 | MS.gene57364:CDS |
GGCAAGTCTTTACACCTACT+TGG | 0.451346 | 4.4:+39977368 | MS.gene57364:CDS |
GATGACATAACCGATTTGTT+GGG | 0.451366 | 4.4:+39970307 | MS.gene57364:CDS |
AGAACAGGTCGTTTAAGTTC+GGG | 0.451858 | 4.4:-39975956 | None:intergenic |
GCTGTAGTGGACAAGAATCT+TGG | 0.452160 | 4.4:+39976288 | MS.gene57364:CDS |
ACCAGTGACTAACAAGTTGA+TGG | 0.456313 | 4.4:-39977456 | None:intergenic |
CATGTCCTTGCTCATGACTC+TGG | 0.457266 | 4.4:+39977430 | MS.gene57364:CDS |
GTTGGCTTCAAAAGCTCATA+AGG | 0.458492 | 4.4:-39978558 | None:intergenic |
AGTTAAATCCTTCATTGAAA+AGG | 0.459003 | 4.4:-39976338 | None:intergenic |
TTCAGCAAATACCTTACAAT+CGG | 0.459678 | 4.4:+39976233 | MS.gene57364:CDS |
AGTAGTATACCGTGACCAAT+TGG | 0.462083 | 4.4:-39976780 | None:intergenic |
AATTGATTTACCCAACAAAT+CGG | 0.464268 | 4.4:-39970317 | None:intergenic |
GTGGTTATTGCTGATTCAGC+AGG | 0.464570 | 4.4:-39976961 | None:intergenic |
GTCAAGTCATTCGCCGGATG+AGG | 0.467476 | 4.4:+39978377 | MS.gene57364:CDS |
TCTGGCTTTCCGCCAATTGG+CGG | 0.468670 | 4.4:-39977340 | None:intergenic |
TCGCCGGATGAGGAATATCT+TGG | 0.470343 | 4.4:+39978387 | MS.gene57364:CDS |
ATGAAGTTCAGGAATAGAAA+TGG | 0.474519 | 4.4:+39978522 | MS.gene57364:CDS |
ATGAGCAAGGACATGAGCTT+TGG | 0.474874 | 4.4:-39977422 | None:intergenic |
AACAAAGGAGGTTGTTTAGG+AGG | 0.475654 | 4.4:+39970143 | MS.gene57364:CDS |
GGAAGTAATAGTTTGTAGAT+TGG | 0.475694 | 4.4:-39977670 | None:intergenic |
TTGCCTCCGCAAGCTGAGAA+AGG | 0.479865 | 4.4:+39976360 | MS.gene57364:CDS |
AAATTGCCAATGCTTATCAT+AGG | 0.480247 | 4.4:-39977812 | None:intergenic |
TCTCCAAGATATTCCTCATC+CGG | 0.481001 | 4.4:-39978390 | None:intergenic |
TGCGTCTGTGTTGCCAAGGT+TGG | 0.481745 | 4.4:+39976389 | MS.gene57364:CDS |
GTTACACCAGGCTCTGATGT+TGG | 0.481878 | 4.4:-39978576 | None:intergenic |
GAGCCTGGTGTAACAGGAAA+AGG | 0.483878 | 4.4:+39978585 | MS.gene57364:CDS |
GAGAAACGATTGAGCCGGCT+TGG | 0.485512 | 4.4:+39978409 | MS.gene57364:CDS |
TGCCTCCGCAAGCTGAGAAA+GGG | 0.489278 | 4.4:+39976361 | MS.gene57364:CDS |
CTTCCACTGATCTATGCGTC+TGG | 0.491600 | 4.4:-39973359 | None:intergenic |
GTTAGCTCCGAGCTAGATCC+CGG | 0.491907 | 4.4:+39970352 | MS.gene57364:CDS |
TGCGTGGAAAGCCGATTGTA+AGG | 0.492059 | 4.4:-39976244 | None:intergenic |
TAAGACCATCATTTGCATAA+GGG | 0.494543 | 4.4:-39977930 | None:intergenic |
ATGACAACCCTGATGATAAG+AGG | 0.495085 | 4.4:+39973550 | MS.gene57364:CDS |
GAGACAAAATTGGAGAAGGA+AGG | 0.497417 | 4.4:+39973318 | MS.gene57364:intron |
ATTGATAAGGTTAAGAGAAG+AGG | 0.497584 | 4.4:+39975832 | MS.gene57364:CDS |
GGGAGGTTGATGGAGCTTGA+AGG | 0.499581 | 4.4:+39978474 | MS.gene57364:CDS |
TCTGAGAAGGATTCGTCCCT+CGG | 0.504722 | 4.4:-39976192 | None:intergenic |
ACGGTCTCAATGTGCTATCA+TGG | 0.506109 | 4.4:-39977297 | None:intergenic |
CTGCTAGTCCTCTATGAATG+AGG | 0.508752 | 4.4:-39977858 | None:intergenic |
TTCAGGAATAGAAATGGTGC+TGG | 0.509228 | 4.4:+39978528 | MS.gene57364:CDS |
AAGACCCTTCGGACAGCGAA+TGG | 0.509994 | 4.4:+39978262 | MS.gene57364:CDS |
TTGACTCATTGTTATAGTAG+TGG | 0.511572 | 4.4:-39977996 | None:intergenic |
GAGAAAAGTCCTCCAACTGT+TGG | 0.515763 | 4.4:-39970259 | None:intergenic |
ATGTTGTTTCGTGCAATGGC+CGG | 0.516262 | 4.4:-39978231 | None:intergenic |
TTCTTGCGTCTGTGTTGCCA+AGG | 0.521427 | 4.4:+39976385 | MS.gene57364:CDS |
TTGAAGCCAACATCAGAGCC+TGG | 0.522494 | 4.4:+39978570 | MS.gene57364:CDS |
TTTGGAAGACAGACTATAGC+AGG | 0.522688 | 4.4:+39976739 | MS.gene57364:CDS |
ATCTTACTGTCCATTGTGGC+GGG | 0.524956 | 4.4:-39976459 | None:intergenic |
AGGCATGTTGTTTCGTGCAA+TGG | 0.525554 | 4.4:-39978235 | None:intergenic |
GCAAAGAACATCCATATCCT+AGG | 0.527336 | 4.4:+39975984 | MS.gene57364:CDS |
AGACCCTTCGGACAGCGAAT+GGG | 0.527739 | 4.4:+39978263 | MS.gene57364:CDS |
ATTGGTTCCTCTTGCCAAGC+CGG | 0.531139 | 4.4:-39978423 | None:intergenic |
TCCCAAACAACTCTCCCTCT+TGG | 0.531245 | 4.4:+39977777 | MS.gene57364:CDS |
TCAGAAATGGCTATAGAAAG+AGG | 0.531378 | 4.4:+39970280 | MS.gene57364:CDS |
CTTAAACGACCTGTTCTTGG+TGG | 0.533575 | 4.4:+39975962 | MS.gene57364:CDS |
TTGACAAGCCTGACCAACCT+TGG | 0.535049 | 4.4:-39976402 | None:intergenic |
ACCATCAACTTGTTAGTCAC+TGG | 0.535909 | 4.4:+39977455 | MS.gene57364:CDS |
AATCCTTCTGGTGTTTCAGA+TGG | 0.536422 | 4.4:-39975812 | None:intergenic |
GCACAACATTATATGGATCA+AGG | 0.536766 | 4.4:+39977257 | MS.gene57364:CDS |
ACTGTTCAACCAACAGTTGG+AGG | 0.537630 | 4.4:+39970250 | MS.gene57364:CDS |
TCCATTGTGTATCTAAAATG+TGG | 0.538918 | 4.4:-39977691 | None:intergenic |
TTAGCTCGGCCGCCAATTGG+CGG | 0.540332 | 4.4:+39977331 | MS.gene57364:CDS |
TCATCTATGGCTGAGAAAAG+AGG | 0.540800 | 4.4:-39976315 | None:intergenic |
GATTACCCTTATGCAAATGA+TGG | 0.542032 | 4.4:+39977925 | MS.gene57364:CDS |
AAACACCAGAAGGATTGATA+AGG | 0.546240 | 4.4:+39975819 | MS.gene57364:CDS |
CTGTCCGAAGGGTCTTCTGT+AGG | 0.547242 | 4.4:-39978255 | None:intergenic |
TATGAATGAGGTCATTTGGA+AGG | 0.549816 | 4.4:-39977846 | None:intergenic |
GAGGAAGTCAGAAAACTTGA+AGG | 0.554158 | 4.4:+39977235 | MS.gene57364:CDS |
TTTGGTTACTTCCAATACCA+TGG | 0.556225 | 4.4:-39970072 | None:intergenic |
CATCTATGGCTGAGAAAAGA+GGG | 0.557786 | 4.4:-39976314 | None:intergenic |
AGAAACCCTTTCTCAGCTTG+CGG | 0.559756 | 4.4:-39976366 | None:intergenic |
TTGGAGAAGGAAGGAATCAA+AGG | 0.560037 | 4.4:+39973327 | MS.gene57364:CDS |
CAATAGCCTATGATAAGCAT+TGG | 0.560181 | 4.4:+39977806 | MS.gene57364:CDS |
CTTCCAATACCATGGAGACA+TGG | 0.561407 | 4.4:-39970064 | None:intergenic |
TCTTGGAGAAACGATTGAGC+CGG | 0.561911 | 4.4:+39978404 | MS.gene57364:CDS |
AGATATTGGTGCAGTTCTTG+TGG | 0.562515 | 4.4:+39973425 | MS.gene57364:CDS |
AAAAGAGACAAAATTGGAGA+AGG | 0.563624 | 4.4:+39973314 | MS.gene57364:intron |
CTGAAAACTTTACGAGGCAA+TGG | 0.564230 | 4.4:+39975857 | MS.gene57364:CDS |
GAAGCACTTATAAATGCAGA+TGG | 0.564500 | 4.4:+39977733 | MS.gene57364:CDS |
GAGTTGCTTTAATTCTGAGA+AGG | 0.565436 | 4.4:-39976205 | None:intergenic |
CGTTGGCGATCGAGTTAGCT+CGG | 0.566042 | 4.4:+39977317 | MS.gene57364:CDS |
AACCCTTTCTCAGCTTGCGG+AGG | 0.566717 | 4.4:-39976363 | None:intergenic |
GTCATAGCTTGAATTTGCGA+AGG | 0.572643 | 4.4:-39978330 | None:intergenic |
ATGAATGAGGTCATTTGGAA+GGG | 0.573787 | 4.4:-39977845 | None:intergenic |
AGTTCCCATTCGCTGTCCGA+AGG | 0.574184 | 4.4:-39978267 | None:intergenic |
CCAAATGACCTCATTCATAG+AGG | 0.574379 | 4.4:+39977850 | MS.gene57364:CDS |
GACCATTGTTTGGATTACAT+CGG | 0.574726 | 4.4:+39978149 | MS.gene57364:CDS |
TGACTTACCGGGATCTAGCT+CGG | 0.577812 | 4.4:-39970359 | None:intergenic |
TTTCTGACTTCCTCGACCAA+CGG | 0.578983 | 4.4:-39977226 | None:intergenic |
CAGAAATGGCTATAGAAAGA+GGG | 0.580132 | 4.4:+39970281 | MS.gene57364:CDS |
CAATTGGCGGAAAGCCAGAA+TGG | 0.580426 | 4.4:+39977344 | MS.gene57364:CDS |
TTGTTGCTCAATCATTTCAG+TGG | 0.580753 | 4.4:-39976980 | None:intergenic |
ACACCAGTTGAGTGCCAAGT+AGG | 0.585215 | 4.4:-39977382 | None:intergenic |
TTGAACAAGCCATGTCTCCA+TGG | 0.586444 | 4.4:+39970055 | MS.gene57364:CDS |
GTTACTGTTCAACCAACAGT+TGG | 0.586551 | 4.4:+39970247 | MS.gene57364:CDS |
GATTGAGCCGGCTTGGCAAG+AGG | 0.589180 | 4.4:+39978416 | MS.gene57364:CDS |
TATCTTACTGTCCATTGTGG+CGG | 0.591570 | 4.4:-39976460 | None:intergenic |
GGTTGTGAAAACAGCTGTAG+TGG | 0.595530 | 4.4:+39976275 | MS.gene57364:CDS |
GTTGGTCAGGCTTGTCAATG+AGG | 0.596030 | 4.4:+39976407 | MS.gene57364:CDS |
GTTCCCATTCGCTGTCCGAA+GGG | 0.597179 | 4.4:-39978266 | None:intergenic |
TTTGGTCAGTATACTTACGC+TGG | 0.598381 | 4.4:+39978192 | MS.gene57364:CDS |
TGCTATAATGTAAGGCTCTG+TGG | 0.599707 | 4.4:-39977620 | None:intergenic |
CATGCCTACAGAAGACCCTT+CGG | 0.600883 | 4.4:+39978251 | MS.gene57364:CDS |
CCACTGATCTATGCGTCTGG+TGG | 0.602891 | 4.4:-39973356 | None:intergenic |
TGGTATGAGATTAGAAATGT+TGG | 0.603834 | 4.4:+39978054 | MS.gene57364:CDS |
AAATGACCCTCTTATCATCA+GGG | 0.603935 | 4.4:-39973557 | None:intergenic |
TTGAAGGTATAATAGATGAG+AGG | 0.604595 | 4.4:+39978490 | MS.gene57364:CDS |
AAATATCTTACTGTCCATTG+TGG | 0.606843 | 4.4:-39976463 | None:intergenic |
TTCGCAAATTCAAGCTATGA+CGG | 0.607036 | 4.4:+39978332 | MS.gene57364:CDS |
CGAGCTAACTCGATCGCCAA+CGG | 0.607861 | 4.4:-39977316 | None:intergenic |
TCAGGCTTGTCAATGAGGCT+AGG | 0.608501 | 4.4:+39976412 | MS.gene57364:CDS |
TGTGGAAAATGAGCATAGAA+GGG | 0.608699 | 4.4:+39973443 | MS.gene57364:CDS |
TCACAACCGGTAAAAGTGCG+TGG | 0.609810 | 4.4:-39976260 | None:intergenic |
AGGACATGCTACAGTTGAAG+AGG | 0.610205 | 4.4:+39977008 | MS.gene57364:CDS |
GGCTATTGAACTTACCAAGA+GGG | 0.610590 | 4.4:-39977791 | None:intergenic |
GAAGCTGAATTTGAAGTACC+AGG | 0.611074 | 4.4:+39973393 | MS.gene57364:CDS |
CTTCCAGTTCTACAACGCCT+AGG | 0.613399 | 4.4:-39976001 | None:intergenic |
TTGTTGCATCCAATTGGTCA+CGG | 0.613442 | 4.4:+39976771 | MS.gene57364:CDS |
TGATAGCACATTGAGACCGT+TGG | 0.613528 | 4.4:+39977300 | MS.gene57364:CDS |
TCATAGCTTGAATTTGCGAA+GGG | 0.614455 | 4.4:-39978329 | None:intergenic |
GAGATTAGAAATGTTGGTCA+CGG | 0.614978 | 4.4:+39978060 | MS.gene57364:CDS |
CGGATAAAGAATTACAAGCA+TGG | 0.616013 | 4.4:+39978031 | MS.gene57364:CDS |
TTGTGGCGGGAGTCTCGAAA+CGG | 0.619459 | 4.4:-39976446 | None:intergenic |
ACTTTACGAGGCAATGGACA+AGG | 0.619463 | 4.4:+39975863 | MS.gene57364:CDS |
ATGATTGAGCAACAAATCAG+AGG | 0.621173 | 4.4:+39976988 | MS.gene57364:CDS |
TGACAACCCTGATGATAAGA+GGG | 0.622995 | 4.4:+39973551 | MS.gene57364:CDS |
AAAGATCCAAATGCCCCACA+TGG | 0.624536 | 4.4:+39977883 | MS.gene57364:CDS |
TTTCGAGACTCCCGCCACAA+TGG | 0.628813 | 4.4:+39976449 | MS.gene57364:CDS |
TCATAAACCAAAAGAAACAA+AGG | 0.629237 | 4.4:+39970128 | MS.gene57364:CDS |
CCCCGATGTAATCCAAACAA+TGG | 0.629499 | 4.4:-39978151 | None:intergenic |
TGAGTCAAGAACTGTTGAGT+CGG | 0.633371 | 4.4:+39978011 | MS.gene57364:CDS |
TACATCGGGGCATCATGCTG+CGG | 0.637437 | 4.4:+39978164 | MS.gene57364:CDS |
TACGATGTGTATAATGACCT+CGG | 0.643812 | 4.4:+39975917 | MS.gene57364:CDS |
GTAACAATGTCTATGTTCCG+AGG | 0.644422 | 4.4:+39976175 | MS.gene57364:CDS |
CCACCAGACGCATAGATCAG+TGG | 0.649521 | 4.4:+39973356 | MS.gene57364:CDS |
GTGACCAATTGGATGCAACA+AGG | 0.655202 | 4.4:-39976769 | None:intergenic |
CCATTGTTTGGATTACATCG+GGG | 0.657108 | 4.4:+39978151 | MS.gene57364:CDS |
TAACAATGTCTATGTTCCGA+GGG | 0.658588 | 4.4:+39976176 | MS.gene57364:CDS |
TTACCATCTGAAACACCAGA+AGG | 0.662031 | 4.4:+39975809 | MS.gene57364:CDS |
TTGGCGGAAAGCCAGAATGG+AGG | 0.667120 | 4.4:+39977347 | MS.gene57364:CDS |
GGTAGCCAGAGTCATGAGCA+AGG | 0.680144 | 4.4:-39977435 | None:intergenic |
TAAACCAAAAGAAACAAAGG+AGG | 0.689233 | 4.4:+39970131 | MS.gene57364:CDS |
GTGACAAGAAAGACGAACCA+TGG | 0.691218 | 4.4:+39978082 | MS.gene57364:CDS |
AGGCTATTGAACTTACCAAG+AGG | 0.696886 | 4.4:-39977792 | None:intergenic |
GGCCTACCTGTATCGCAACG+AGG | 0.706133 | 4.4:-39976025 | None:intergenic |
ACTTGACAAAATATCCAACA+CGG | 0.724220 | 4.4:-39978361 | None:intergenic |
ATAAAGAATTACAAGCATGG+TGG | 0.729305 | 4.4:+39978034 | MS.gene57364:CDS |
ACAAGAAAGACGAACCATGG+TGG | 0.729803 | 4.4:+39978085 | MS.gene57364:CDS |
GAGGAACTGAAAACTTTACG+AGG | 0.731350 | 4.4:+39975851 | MS.gene57364:CDS |
TATGACGGTGATGACCGTGT+TGG | 0.742214 | 4.4:+39978347 | MS.gene57364:CDS |
TGTTGGTTGAACAGTAACTG+TGG | 0.746011 | 4.4:-39970242 | None:intergenic |
GATCGCTGTCTGGATCACCG+AGG | 0.820366 | 4.4:-39975934 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 39970013 | 39978632 | 39970013 | ID=MS.gene57364 |
chr4.4 | mRNA | 39970013 | 39978632 | 39970013 | ID=MS.gene57364.t1;Parent=MS.gene57364 |
chr4.4 | exon | 39970013 | 39970373 | 39970013 | ID=MS.gene57364.t1.exon1;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39970013 | 39970373 | 39970013 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39973319 | 39973590 | 39973319 | ID=MS.gene57364.t1.exon2;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39973319 | 39973590 | 39973319 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39975803 | 39976040 | 39975803 | ID=MS.gene57364.t1.exon3;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39975803 | 39976040 | 39975803 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39976154 | 39976474 | 39976154 | ID=MS.gene57364.t1.exon4;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39976154 | 39976474 | 39976154 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39976707 | 39976792 | 39976707 | ID=MS.gene57364.t1.exon5;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39976707 | 39976792 | 39976707 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39976919 | 39977029 | 39976919 | ID=MS.gene57364.t1.exon6;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39976919 | 39977029 | 39976919 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39977175 | 39977476 | 39977175 | ID=MS.gene57364.t1.exon7;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39977175 | 39977476 | 39977175 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
chr4.4 | exon | 39977603 | 39978632 | 39977603 | ID=MS.gene57364.t1.exon8;Parent=MS.gene57364.t1 |
chr4.4 | CDS | 39977603 | 39978632 | 39977603 | ID=cds.MS.gene57364.t1;Parent=MS.gene57364.t1 |
Gene Sequence |
Protein sequence |