Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57601.t1 | XP_024637181.1 | 98 | 355 | 7 | 0 | 2 | 356 | 130 | 484 | 2.20E-208 | 734.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57601.t1 | Q9M2U3 | 28.4 | 324 | 193 | 9 | 16 | 312 | 53 | 364 | 3.4e-32 | 140.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57601.t1 | A0A396IIE8 | 98.0 | 355 | 7 | 0 | 2 | 356 | 130 | 484 | 1.6e-208 | 734.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene57601 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene051226 | MS.gene57601 | 0.849786 | 2.59E-60 | -1.69E-46 |
| MS.gene051837 | MS.gene57601 | 0.983663 | 2.31E-158 | -1.69E-46 |
| MS.gene053499 | MS.gene57601 | 0.815318 | 9.83E-52 | -1.69E-46 |
| MS.gene054617 | MS.gene57601 | 0.8361 | 1.14E-56 | -1.69E-46 |
| MS.gene057093 | MS.gene57601 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene057432 | MS.gene57601 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene06061 | MS.gene57601 | 0.834631 | 2.68E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57601.t1 | AT5G12010 | 65.352 | 355 | 122 | 1 | 3 | 356 | 147 | 501 | 1.47e-180 | 510 |
| MS.gene57601.t1 | AT4G29780 | 65.722 | 353 | 120 | 1 | 2 | 353 | 184 | 536 | 6.22e-178 | 505 |
| MS.gene57601.t1 | AT3G63270 | 30.159 | 315 | 185 | 10 | 16 | 303 | 43 | 349 | 4.95e-38 | 140 |
| MS.gene57601.t1 | AT3G55350 | 28.395 | 324 | 193 | 9 | 16 | 312 | 53 | 364 | 7.21e-38 | 140 |
| MS.gene57601.t1 | AT3G19120 | 24.839 | 310 | 193 | 8 | 28 | 315 | 114 | 405 | 5.92e-24 | 102 |
Find 93 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGATGGATGGAATTT+TGG | 0.058357 | 8.2:+6847076 | MS.gene57601:CDS |
| TCTTGGGTTGTTGGAAATTC+TGG | 0.088510 | 8.2:+6847050 | MS.gene57601:CDS |
| CTCTTTGAAACCAGCCTTAA+AGG | 0.137684 | 8.2:-6846624 | None:intergenic |
| TTGCCACCGGTGATCCTTTA+AGG | 0.178844 | 8.2:+6846610 | MS.gene57601:CDS |
| CATTTCTGCCACCAGTCTTT+TGG | 0.195355 | 8.2:-6846420 | None:intergenic |
| AACTCTTCCTCCGGAAATTC+TGG | 0.218374 | 8.2:-6846450 | None:intergenic |
| TTGGACTTAGGTGCAATTAT+TGG | 0.242423 | 8.2:-6846831 | None:intergenic |
| GAGGAGTTGCCTGGTGTTCT+TGG | 0.249284 | 8.2:+6847242 | MS.gene57601:CDS |
| AAACAGCTGATTCAAGTTCT+TGG | 0.262964 | 8.2:-6846518 | None:intergenic |
| TTCACCCATAACCGTCTTAC+TGG | 0.272495 | 8.2:-6846390 | None:intergenic |
| GTCAAATTCTGATGTGTATA+AGG | 0.284658 | 8.2:-6847101 | None:intergenic |
| CAGGGAATTTGAAAGATTCT+TGG | 0.293250 | 8.2:+6847033 | MS.gene57601:CDS |
| TTGCTAAGGGATGCAATTCC+CGG | 0.296879 | 8.2:+6846555 | MS.gene57601:CDS |
| CGAACGTTGCTTTGCTCATC+CGG | 0.309148 | 8.2:-6846485 | None:intergenic |
| CTTGGGTTGTTGGAAATTCT+GGG | 0.311033 | 8.2:+6847051 | MS.gene57601:CDS |
| TTATAATGATGATCAGGTTT+TGG | 0.315416 | 8.2:+6846980 | MS.gene57601:CDS |
| AAGAGTTCAGGAGATGTTTC+CGG | 0.316563 | 8.2:+6846466 | MS.gene57601:CDS |
| AGCGCGTGGCGGTTTGTATC+TGG | 0.334097 | 8.2:+6846583 | MS.gene57601:CDS |
| AAATTCTGGGTTCCCTTTGA+TGG | 0.337782 | 8.2:+6847064 | MS.gene57601:CDS |
| ATGCAGCAGTCCAGAATTTC+CGG | 0.340952 | 8.2:+6846440 | MS.gene57601:CDS |
| AACCGCCACGCGCTGCCGCC+CGG | 0.343618 | 8.2:-6846574 | None:intergenic |
| TGAATTCTTATTTCAATAAG+AGG | 0.366055 | 8.2:+6846856 | MS.gene57601:CDS |
| TTGAAAGATTCTTGGGTTGT+TGG | 0.375328 | 8.2:+6847041 | MS.gene57601:CDS |
| TACATTGAACCACCAACATT+TGG | 0.379629 | 8.2:-6846795 | None:intergenic |
| ACCGCCACGCGCTGCCGCCC+GGG | 0.388713 | 8.2:-6846573 | None:intergenic |
| GGTTTCAAAGAGGTTCGGTT+TGG | 0.398582 | 8.2:+6846635 | MS.gene57601:CDS |
| GCATACTCTGTTACTGTTCA+AGG | 0.400851 | 8.2:+6846903 | MS.gene57601:CDS |
| TTATGCCAAAGTTTATTACT+TGG | 0.406688 | 8.2:+6846715 | MS.gene57601:CDS |
| AATTTCCGGAGGAAGAGTTC+AGG | 0.409085 | 8.2:+6846454 | MS.gene57601:CDS |
| TGGTTCTTATAATGATGATC+AGG | 0.413194 | 8.2:+6846974 | MS.gene57601:CDS |
| AGGGAATTTGAAAGATTCTT+GGG | 0.414339 | 8.2:+6847034 | MS.gene57601:CDS |
| GTTTCAAAGAGGTTCGGTTT+GGG | 0.421074 | 8.2:+6846636 | MS.gene57601:CDS |
| CACCGGTGATCCTTTAAGGC+TGG | 0.435269 | 8.2:+6846614 | MS.gene57601:CDS |
| CAGCAAGCACCAAGAACACC+AGG | 0.435403 | 8.2:-6847251 | None:intergenic |
| AAGGTGTGGTTGATACTAAA+GGG | 0.444687 | 8.2:+6846922 | MS.gene57601:CDS |
| TAAGAATTCACATTGGACTT+AGG | 0.445097 | 8.2:-6846843 | None:intergenic |
| AGGTCCAGTAAGACGGTTAT+GGG | 0.445279 | 8.2:+6846386 | MS.gene57601:CDS |
| GAGGTCCAGTAAGACGGTTA+TGG | 0.447310 | 8.2:+6846385 | MS.gene57601:CDS |
| TTTGATTAAACAAGAGTTTG+AGG | 0.451818 | 8.2:+6846758 | MS.gene57601:CDS |
| CAAGGTGTGGTTGATACTAA+AGG | 0.464115 | 8.2:+6846921 | MS.gene57601:CDS |
| TCCCGGGCGGCAGCGCGTGG+CGG | 0.468360 | 8.2:+6846572 | MS.gene57601:CDS |
| GAGGATAGAGGTGAAGATTG+AGG | 0.471283 | 8.2:+6847223 | MS.gene57601:CDS |
| CTGTTGCTGCTGTTCAAGCT+AGG | 0.480095 | 8.2:+6847375 | MS.gene57601:CDS |
| TCTGGGTTCCCTTTGATGGA+TGG | 0.480100 | 8.2:+6847068 | MS.gene57601:CDS |
| TCAGGCCAAGTAATAAACTT+TGG | 0.480951 | 8.2:-6846720 | None:intergenic |
| AGGCTGGTTTCAAAGAGGTT+CGG | 0.481630 | 8.2:+6846630 | MS.gene57601:CDS |
| GGTGGTCTTGTTTGCAGAAG+AGG | 0.482578 | 8.2:+6847204 | MS.gene57601:CDS |
| TTGATTAAACAAGAGTTTGA+GGG | 0.485947 | 8.2:+6846759 | MS.gene57601:CDS |
| TGAAAGAACGTCCAAAAGAC+TGG | 0.511704 | 8.2:+6846409 | MS.gene57601:CDS |
| ACCAAAATTCCATCCATCAA+AGG | 0.513056 | 8.2:-6847077 | None:intergenic |
| GGATATTCAGAAGCTGTGTA+AGG | 0.523114 | 8.2:+6847157 | MS.gene57601:CDS |
| CTCTGTTACTGTTCAAGGTG+TGG | 0.523511 | 8.2:+6846908 | MS.gene57601:CDS |
| CCAAAATTCCATCCATCAAA+GGG | 0.523543 | 8.2:-6847076 | None:intergenic |
| TTGTTTGCAGAAGAGGATAG+AGG | 0.524424 | 8.2:+6847211 | MS.gene57601:CDS |
| CATCTCCTGAACTCTTCCTC+CGG | 0.527345 | 8.2:-6846459 | None:intergenic |
| TTTGGAATGCCAAATGTTGG+TGG | 0.527866 | 8.2:+6846786 | MS.gene57601:CDS |
| TGAAATGAGAAATGAGAAGA+TGG | 0.532464 | 8.2:+6847292 | MS.gene57601:CDS |
| TATATCCACCTGTCATAAGC+TGG | 0.547796 | 8.2:+6846659 | MS.gene57601:CDS |
| AAAAGTTCAAAATTCCATGC+AGG | 0.556616 | 8.2:-6847317 | None:intergenic |
| TGCTAAGGGATGCAATTCCC+GGG | 0.559385 | 8.2:+6846556 | MS.gene57601:CDS |
| CTCGAGAACCAGCTTATGAC+AGG | 0.564326 | 8.2:-6846667 | None:intergenic |
| AATTCCCGGGCGGCAGCGCG+TGG | 0.564819 | 8.2:+6846569 | MS.gene57601:CDS |
| ATGTATCAGAGAGCTATGAC+AGG | 0.567243 | 8.2:+6847014 | MS.gene57601:CDS |
| GATGAAATGGTTGCTGAGAA+TGG | 0.571501 | 8.2:+6847344 | MS.gene57601:CDS |
| CTTTAAGGCTGGTTTCAAAG+AGG | 0.577123 | 8.2:+6846625 | MS.gene57601:CDS |
| CTGTCATAAGCTGGTTCTCG+AGG | 0.578653 | 8.2:+6846668 | MS.gene57601:CDS |
| ATGAGAAGATGGATCCTGCA+TGG | 0.580887 | 8.2:+6847303 | MS.gene57601:CDS |
| TGATCATCATTATAAGAACC+AGG | 0.582500 | 8.2:-6846972 | None:intergenic |
| TGTTGCTGCTGTTCAAGCTA+GGG | 0.584860 | 8.2:+6847376 | MS.gene57601:CDS |
| GATGCGTTTGCAAAGGTGAA+AGG | 0.587098 | 8.2:+6847179 | MS.gene57601:CDS |
| ATACACATCAGAATTTGACT+TGG | 0.591529 | 8.2:+6847105 | MS.gene57601:CDS |
| AACCAGCCTTAAAGGATCAC+CGG | 0.593167 | 8.2:-6846616 | None:intergenic |
| TTATTGCATCGTGGTCGTGT+TGG | 0.605444 | 8.2:+6847416 | MS.gene57601:CDS |
| ATTGAAATAAGAATTCACAT+TGG | 0.606107 | 8.2:-6846850 | None:intergenic |
| CAATGGGAGGTCCAGTAAGA+CGG | 0.606401 | 8.2:+6846379 | None:intergenic |
| GCACGCGTTTAATGAGAAAG+TGG | 0.606857 | 8.2:+6847133 | MS.gene57601:CDS |
| GTGAAGATTGAGGAGTTGCC+TGG | 0.615794 | 8.2:+6847233 | MS.gene57601:CDS |
| GCTCATGATTTATTGCATCG+TGG | 0.641202 | 8.2:+6847407 | MS.gene57601:CDS |
| TGCAATTATTGGAATATGTG+TGG | 0.641263 | 8.2:-6846820 | None:intergenic |
| TGTATCTGGAGACTTGCCAC+CGG | 0.646276 | 8.2:+6846597 | MS.gene57601:CDS |
| CGTTTGCAAAGGTGAAAGGA+AGG | 0.647177 | 8.2:+6847183 | MS.gene57601:CDS |
| TCAATAAGAGGCAGACTCAG+AGG | 0.654570 | 8.2:+6846868 | MS.gene57601:CDS |
| CGCGTTTAATGAGAAAGTGG+AGG | 0.659194 | 8.2:+6847136 | MS.gene57601:CDS |
| GAGAACCAGCTTATGACAGG+TGG | 0.660646 | 8.2:-6846664 | None:intergenic |
| GTGTAAGGATGCGTTTGCAA+AGG | 0.672985 | 8.2:+6847172 | MS.gene57601:CDS |
| GATCATCATTATAAGAACCA+GGG | 0.676277 | 8.2:-6846971 | None:intergenic |
| TTGCAAAGGTGAAAGGAAGG+TGG | 0.690826 | 8.2:+6847186 | MS.gene57601:CDS |
| GCAACTTCTTCAGCAATGGG+AGG | 0.707088 | 8.2:+6846366 | None:intergenic |
| AAGAACGTCCAAAAGACTGG+TGG | 0.708336 | 8.2:+6846412 | MS.gene57601:CDS |
| CAGCCTTAAAGGATCACCGG+TGG | 0.709341 | 8.2:-6846613 | None:intergenic |
| TGTATCAGAGAGCTATGACA+GGG | 0.716009 | 8.2:+6847015 | MS.gene57601:CDS |
| CAGCAGTCCAGAATTTCCGG+AGG | 0.724581 | 8.2:+6846443 | MS.gene57601:CDS |
| TAAGGGATGCAATTCCCGGG+CGG | 0.733518 | 8.2:+6846559 | MS.gene57601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATAAGAATTCACAT+TGG | - | chr8.2:6846853-6846872 | None:intergenic | 20.0% |
| !!! | AAATTCATCTTATTTTCATC+AGG | - | chr8.2:6846741-6846760 | None:intergenic | 20.0% |
| !!! | TGAATTCTTATTTCAATAAG+AGG | + | chr8.2:6846856-6846875 | MS.gene57601:CDS | 20.0% |
| ! | AAAGAAAAACACTTTGCTAA+GGG | + | chr8.2:6846542-6846561 | MS.gene57601:CDS | 25.0% |
| ! | TTATGCCAAAGTTTATTACT+TGG | + | chr8.2:6846715-6846734 | MS.gene57601:CDS | 25.0% |
| ! | TTGATTAAACAAGAGTTTGA+GGG | + | chr8.2:6846759-6846778 | MS.gene57601:CDS | 25.0% |
| ! | TTTGATTAAACAAGAGTTTG+AGG | + | chr8.2:6846758-6846777 | MS.gene57601:CDS | 25.0% |
| !! | ATTTTCACTGATGTTTTTCT+TGG | + | chr8.2:6846945-6846964 | MS.gene57601:CDS | 25.0% |
| !! | TTATAATGATGATCAGGTTT+TGG | + | chr8.2:6846980-6846999 | MS.gene57601:CDS | 25.0% |
| !!! | TGAACTTTTTGATGATGAAA+TGG | + | chr8.2:6847331-6847350 | MS.gene57601:CDS | 25.0% |
| AAAAGTTCAAAATTCCATGC+AGG | - | chr8.2:6847320-6847339 | None:intergenic | 30.0% | |
| AGGGAATTTGAAAGATTCTT+GGG | + | chr8.2:6847034-6847053 | MS.gene57601:CDS | 30.0% | |
| ATACACATCAGAATTTGACT+TGG | + | chr8.2:6847105-6847124 | MS.gene57601:CDS | 30.0% | |
| CAAAGAAAAACACTTTGCTA+AGG | + | chr8.2:6846541-6846560 | MS.gene57601:CDS | 30.0% | |
| GATCATCATTATAAGAACCA+GGG | - | chr8.2:6846974-6846993 | None:intergenic | 30.0% | |
| GTCAAATTCTGATGTGTATA+AGG | - | chr8.2:6847104-6847123 | None:intergenic | 30.0% | |
| TAAGAATTCACATTGGACTT+AGG | - | chr8.2:6846846-6846865 | None:intergenic | 30.0% | |
| TGAAATGAGAAATGAGAAGA+TGG | + | chr8.2:6847292-6847311 | MS.gene57601:CDS | 30.0% | |
| TGATCATCATTATAAGAACC+AGG | - | chr8.2:6846975-6846994 | None:intergenic | 30.0% | |
| TGCAATTATTGGAATATGTG+TGG | - | chr8.2:6846823-6846842 | None:intergenic | 30.0% | |
| TGGTTCTTATAATGATGATC+AGG | + | chr8.2:6846974-6846993 | MS.gene57601:CDS | 30.0% | |
| ACCAAAATTCCATCCATCAA+AGG | - | chr8.2:6847080-6847099 | None:intergenic | 35.0% | |
| CAGGGAATTTGAAAGATTCT+TGG | + | chr8.2:6847033-6847052 | MS.gene57601:CDS | 35.0% | |
| CCAAAATTCCATCCATCAAA+GGG | - | chr8.2:6847079-6847098 | None:intergenic | 35.0% | |
| TACATTGAACCACCAACATT+TGG | - | chr8.2:6846798-6846817 | None:intergenic | 35.0% | |
| TCAGGCCAAGTAATAAACTT+TGG | - | chr8.2:6846723-6846742 | None:intergenic | 35.0% | |
| TTGGACTTAGGTGCAATTAT+TGG | - | chr8.2:6846834-6846853 | None:intergenic | 35.0% | |
| ! | AAACAGCTGATTCAAGTTCT+TGG | - | chr8.2:6846521-6846540 | None:intergenic | 35.0% |
| ! | AAGGTGTGGTTGATACTAAA+GGG | + | chr8.2:6846922-6846941 | MS.gene57601:CDS | 35.0% |
| ! | TAACAGAGTATGCAGTTTTC+TGG | - | chr8.2:6846896-6846915 | None:intergenic | 35.0% |
| ! | TTGAAAGATTCTTGGGTTGT+TGG | + | chr8.2:6847041-6847060 | MS.gene57601:CDS | 35.0% |
| !!! | CTTTTTGGAATGCCAAATGT+TGG | + | chr8.2:6846783-6846802 | MS.gene57601:CDS | 35.0% |
| AAATTCTGGGTTCCCTTTGA+TGG | + | chr8.2:6847064-6847083 | MS.gene57601:CDS | 40.0% | |
| AAGAGTTCAGGAGATGTTTC+CGG | + | chr8.2:6846466-6846485 | MS.gene57601:CDS | 40.0% | |
| ATGTATCAGAGAGCTATGAC+AGG | + | chr8.2:6847014-6847033 | MS.gene57601:CDS | 40.0% | |
| GATGAAATGGTTGCTGAGAA+TGG | + | chr8.2:6847344-6847363 | MS.gene57601:CDS | 40.0% | |
| GCATACTCTGTTACTGTTCA+AGG | + | chr8.2:6846903-6846922 | MS.gene57601:CDS | 40.0% | |
| GCTCATGATTTATTGCATCG+TGG | + | chr8.2:6847407-6847426 | MS.gene57601:CDS | 40.0% | |
| GGATATTCAGAAGCTGTGTA+AGG | + | chr8.2:6847157-6847176 | MS.gene57601:CDS | 40.0% | |
| TATATCCACCTGTCATAAGC+TGG | + | chr8.2:6846659-6846678 | MS.gene57601:CDS | 40.0% | |
| TGAAAGAACGTCCAAAAGAC+TGG | + | chr8.2:6846409-6846428 | MS.gene57601:CDS | 40.0% | |
| TGTATCAGAGAGCTATGACA+GGG | + | chr8.2:6847015-6847034 | MS.gene57601:CDS | 40.0% | |
| TTGTTTGCAGAAGAGGATAG+AGG | + | chr8.2:6847211-6847230 | MS.gene57601:CDS | 40.0% | |
| ! | CAAGAGTTTGAGGGTCTTTT+TGG | + | chr8.2:6846768-6846787 | MS.gene57601:CDS | 40.0% |
| ! | CAAGGTGTGGTTGATACTAA+AGG | + | chr8.2:6846921-6846940 | MS.gene57601:CDS | 40.0% |
| ! | CTTGGGTTGTTGGAAATTCT+GGG | + | chr8.2:6847051-6847070 | MS.gene57601:CDS | 40.0% |
| ! | GATGTTTTTCTTGGTTACCC+TGG | + | chr8.2:6846954-6846973 | MS.gene57601:CDS | 40.0% |
| ! | GTTTCAAAGAGGTTCGGTTT+GGG | + | chr8.2:6846636-6846655 | MS.gene57601:CDS | 40.0% |
| ! | TCTTGGGTTGTTGGAAATTC+TGG | + | chr8.2:6847050-6847069 | MS.gene57601:CDS | 40.0% |
| ! | TTTGGAATGCCAAATGTTGG+TGG | + | chr8.2:6846786-6846805 | MS.gene57601:CDS | 40.0% |
| !! | CCCTTTGATGGATGGAATTT+TGG | + | chr8.2:6847076-6847095 | MS.gene57601:CDS | 40.0% |
| !! | CTCTTTGAAACCAGCCTTAA+AGG | - | chr8.2:6846627-6846646 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTGGTTTCAAAG+AGG | + | chr8.2:6846625-6846644 | MS.gene57601:CDS | 40.0% |
| AACCAGCCTTAAAGGATCAC+CGG | - | chr8.2:6846619-6846638 | None:intergenic | 45.0% | |
| AACTCTTCCTCCGGAAATTC+TGG | - | chr8.2:6846453-6846472 | None:intergenic | 45.0% | |
| AAGAACGTCCAAAAGACTGG+TGG | + | chr8.2:6846412-6846431 | MS.gene57601:CDS | 45.0% | |
| AATTTCCGGAGGAAGAGTTC+AGG | + | chr8.2:6846454-6846473 | MS.gene57601:CDS | 45.0% | |
| AGGTCCAGTAAGACGGTTAT+GGG | + | chr8.2:6846386-6846405 | MS.gene57601:CDS | 45.0% | |
| ATGAGAAGATGGATCCTGCA+TGG | + | chr8.2:6847303-6847322 | MS.gene57601:CDS | 45.0% | |
| ATGCAGCAGTCCAGAATTTC+CGG | + | chr8.2:6846440-6846459 | MS.gene57601:CDS | 45.0% | |
| CGCGTTTAATGAGAAAGTGG+AGG | + | chr8.2:6847136-6847155 | MS.gene57601:CDS | 45.0% | |
| CGTTTGCAAAGGTGAAAGGA+AGG | + | chr8.2:6847183-6847202 | MS.gene57601:CDS | 45.0% | |
| CTCTGTTACTGTTCAAGGTG+TGG | + | chr8.2:6846908-6846927 | MS.gene57601:CDS | 45.0% | |
| GAGGATAGAGGTGAAGATTG+AGG | + | chr8.2:6847223-6847242 | MS.gene57601:CDS | 45.0% | |
| GATGCGTTTGCAAAGGTGAA+AGG | + | chr8.2:6847179-6847198 | MS.gene57601:CDS | 45.0% | |
| GCACGCGTTTAATGAGAAAG+TGG | + | chr8.2:6847133-6847152 | MS.gene57601:CDS | 45.0% | |
| GTGTAAGGATGCGTTTGCAA+AGG | + | chr8.2:6847172-6847191 | MS.gene57601:CDS | 45.0% | |
| TCAATAAGAGGCAGACTCAG+AGG | + | chr8.2:6846868-6846887 | MS.gene57601:CDS | 45.0% | |
| TGTTGCTGCTGTTCAAGCTA+GGG | + | chr8.2:6847376-6847395 | MS.gene57601:CDS | 45.0% | |
| TTATTGCATCGTGGTCGTGT+TGG | + | chr8.2:6847416-6847435 | MS.gene57601:CDS | 45.0% | |
| TTCACCCATAACCGTCTTAC+TGG | - | chr8.2:6846393-6846412 | None:intergenic | 45.0% | |
| TTGCAAAGGTGAAAGGAAGG+TGG | + | chr8.2:6847186-6847205 | MS.gene57601:CDS | 45.0% | |
| TTGCTAAGGGATGCAATTCC+CGG | + | chr8.2:6846555-6846574 | MS.gene57601:CDS | 45.0% | |
| ! | CATTTCTGCCACCAGTCTTT+TGG | - | chr8.2:6846423-6846442 | None:intergenic | 45.0% |
| ! | GGTTTCAAAGAGGTTCGGTT+TGG | + | chr8.2:6846635-6846654 | MS.gene57601:CDS | 45.0% |
| !! | AGGCTGGTTTCAAAGAGGTT+CGG | + | chr8.2:6846630-6846649 | MS.gene57601:CDS | 45.0% |
| CATCTCCTGAACTCTTCCTC+CGG | - | chr8.2:6846462-6846481 | None:intergenic | 50.0% | |
| CTCGAGAACCAGCTTATGAC+AGG | - | chr8.2:6846670-6846689 | None:intergenic | 50.0% | |
| CTGTTGCTGCTGTTCAAGCT+AGG | + | chr8.2:6847375-6847394 | MS.gene57601:CDS | 50.0% | |
| GAGAACCAGCTTATGACAGG+TGG | - | chr8.2:6846667-6846686 | None:intergenic | 50.0% | |
| GAGGTCCAGTAAGACGGTTA+TGG | + | chr8.2:6846385-6846404 | MS.gene57601:CDS | 50.0% | |
| GTGAAGATTGAGGAGTTGCC+TGG | + | chr8.2:6847233-6847252 | MS.gene57601:CDS | 50.0% | |
| TCTGGGTTCCCTTTGATGGA+TGG | + | chr8.2:6847068-6847087 | MS.gene57601:CDS | 50.0% | |
| TGCTAAGGGATGCAATTCCC+GGG | + | chr8.2:6846556-6846575 | MS.gene57601:CDS | 50.0% | |
| TGTATCTGGAGACTTGCCAC+CGG | + | chr8.2:6846597-6846616 | MS.gene57601:CDS | 50.0% | |
| TTGCCACCGGTGATCCTTTA+AGG | + | chr8.2:6846610-6846629 | MS.gene57601:CDS | 50.0% | |
| ! | CGAACGTTGCTTTGCTCATC+CGG | - | chr8.2:6846488-6846507 | None:intergenic | 50.0% |
| ! | CTGTCATAAGCTGGTTCTCG+AGG | + | chr8.2:6846668-6846687 | MS.gene57601:CDS | 50.0% |
| !! | GGTGGTCTTGTTTGCAGAAG+AGG | + | chr8.2:6847204-6847223 | MS.gene57601:CDS | 50.0% |
| CAGCAAGCACCAAGAACACC+AGG | - | chr8.2:6847254-6847273 | None:intergenic | 55.0% | |
| CAGCAGTCCAGAATTTCCGG+AGG | + | chr8.2:6846443-6846462 | MS.gene57601:CDS | 55.0% | |
| CAGCCTTAAAGGATCACCGG+TGG | - | chr8.2:6846616-6846635 | None:intergenic | 55.0% | |
| GAGGAGTTGCCTGGTGTTCT+TGG | + | chr8.2:6847242-6847261 | MS.gene57601:CDS | 55.0% | |
| TAAGGGATGCAATTCCCGGG+CGG | + | chr8.2:6846559-6846578 | MS.gene57601:CDS | 55.0% | |
| !! | CACCGGTGATCCTTTAAGGC+TGG | + | chr8.2:6846614-6846633 | MS.gene57601:CDS | 55.0% |
| AGCGCGTGGCGGTTTGTATC+TGG | + | chr8.2:6846583-6846602 | MS.gene57601:CDS | 60.0% | |
| AATTCCCGGGCGGCAGCGCG+TGG | + | chr8.2:6846569-6846588 | MS.gene57601:CDS | 75.0% | |
| ! | AACCGCCACGCGCTGCCGCC+CGG | - | chr8.2:6846577-6846596 | None:intergenic | 80.0% |
| ! | ACCGCCACGCGCTGCCGCCC+GGG | - | chr8.2:6846576-6846595 | None:intergenic | 85.0% |
| ! | TCCCGGGCGGCAGCGCGTGG+CGG | + | chr8.2:6846572-6846591 | MS.gene57601:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6846381 | 6847451 | 6846381 | ID=MS.gene57601 |
| chr8.2 | mRNA | 6846381 | 6847451 | 6846381 | ID=MS.gene57601.t1;Parent=MS.gene57601 |
| chr8.2 | exon | 6846381 | 6847451 | 6846381 | ID=MS.gene57601.t1.exon1;Parent=MS.gene57601.t1 |
| chr8.2 | CDS | 6846381 | 6847451 | 6846381 | ID=cds.MS.gene57601.t1;Parent=MS.gene57601.t1 |
| Gene Sequence |
| Protein sequence |