Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57721.t1 | XP_013458177.1 | 99.4 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57721.t1 | P50651 | 80.3 | 319 | 63 | 0 | 1 | 319 | 23 | 341 | 4.3e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57721.t1 | A0A072USZ2 | 99.4 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene57721 | 0.812747 | 3.63E-51 | -1.69E-46 |
| MS.gene050813 | MS.gene57721 | 0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene051064 | MS.gene57721 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene57721 | 0.852106 | 5.74E-61 | -1.69E-46 |
| MS.gene052309 | MS.gene57721 | -0.84778 | 9.31E-60 | -1.69E-46 |
| MS.gene052358 | MS.gene57721 | -0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene57721 | 0.811653 | 6.29E-51 | -1.69E-46 |
| MS.gene058498 | MS.gene57721 | 0.815921 | 7.22E-52 | -1.69E-46 |
| MS.gene058500 | MS.gene57721 | 0.807223 | 5.62E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene57721 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene57721 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene57721 | -0.834909 | 2.28E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57721.t1 | MTR_4g117370 | 99.373 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 0.0 | 659 |
| MS.gene57721.t1 | MTR_8g469010 | 77.287 | 317 | 68 | 1 | 3 | 319 | 13 | 325 | 0.0 | 521 |
| MS.gene57721.t1 | MTR_1g050472 | 76.730 | 318 | 73 | 1 | 3 | 319 | 13 | 330 | 0.0 | 520 |
| MS.gene57721.t1 | MTR_0268s0080 | 76.730 | 318 | 73 | 1 | 3 | 319 | 13 | 330 | 0.0 | 518 |
| MS.gene57721.t1 | MTR_7g029110 | 76.803 | 319 | 73 | 1 | 2 | 319 | 12 | 330 | 2.34e-180 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57721.t1 | AT3G23580 | 80.251 | 319 | 63 | 0 | 1 | 319 | 23 | 341 | 0.0 | 548 |
| MS.gene57721.t1 | AT3G27060 | 75.710 | 317 | 74 | 2 | 6 | 319 | 16 | 332 | 4.83e-176 | 490 |
Find 61 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTTCTGTGCCATATTC+TGG | 0.174738 | 8.3:+8822338 | MS.gene57721:intron |
| AAAAGGCTGAAGCCAGTTTC+TGG | 0.208732 | 8.3:+8820382 | MS.gene57721:CDS |
| TGATAGGCTCGGGCATTCTA+TGG | 0.295173 | 8.3:+8821633 | MS.gene57721:intron |
| TTGCCCTTTCAGGTTTCCTT+GGG | 0.310825 | 8.3:+8822819 | MS.gene57721:intron |
| TTTGCCCTTTCAGGTTTCCT+TGG | 0.319161 | 8.3:+8822818 | MS.gene57721:intron |
| GGGCATTGAGTTGGATTAAC+AGG | 0.324433 | 8.3:+8821875 | MS.gene57721:CDS |
| TCTGAATGATGTTCAAATTC+CGG | 0.339797 | 8.3:+8821249 | MS.gene57721:CDS |
| TACATCTGATGGAATCGTTT+TGG | 0.341636 | 8.3:+8821207 | MS.gene57721:CDS |
| AAAGTTGTTTGTAGCGAATA+GGG | 0.351905 | 8.3:-8820347 | None:intergenic |
| GCCCTCCCTTGTGCATTGAT+TGG | 0.362088 | 8.3:+8822652 | MS.gene57721:CDS |
| CAAAGTTGTTTGTAGCGAAT+AGG | 0.369374 | 8.3:-8820348 | None:intergenic |
| GTATGTACCGGTCCAGAAAC+TGG | 0.373363 | 8.3:-8820394 | None:intergenic |
| ATTTGTCGCTGACAGGCTAT+TGG | 0.379699 | 8.3:+8822708 | MS.gene57721:CDS |
| GCAATCGAGAATATTCATTC+TGG | 0.401015 | 8.3:+8821666 | MS.gene57721:CDS |
| CAAAGTTCTTCCCATCATCT+TGG | 0.402459 | 8.3:-8823299 | None:intergenic |
| TATTCGCTACAAACAACTTT+GGG | 0.404981 | 8.3:+8820350 | MS.gene57721:CDS |
| TCATTTGCGGAGAGACTTGT+TGG | 0.417465 | 8.3:+8822157 | MS.gene57721:CDS |
| CTATTCGCTACAAACAACTT+TGG | 0.419868 | 8.3:+8820349 | MS.gene57721:CDS |
| GTTGGCTTTGCATGTGTTGA+AGG | 0.420322 | 8.3:+8822175 | MS.gene57721:CDS |
| ACGTGGAAAATCCCTTTGAT+TGG | 0.420885 | 8.3:+8822859 | MS.gene57721:CDS |
| CTGCAGTTCCACTTCATTTG+CGG | 0.421908 | 8.3:+8822144 | MS.gene57721:intron |
| ACTTTGGGAGATGTACAAAA+AGG | 0.422922 | 8.3:+8820365 | MS.gene57721:CDS |
| TATGTATTGGCTCATAAGCT+TGG | 0.458646 | 8.3:-8822683 | None:intergenic |
| TCTTCCTTGTGTTGCAAGGA+AGG | 0.470108 | 8.3:+8821846 | MS.gene57721:CDS |
| AGGCTGAATGGGCATTGAGT+TGG | 0.487477 | 8.3:+8821866 | MS.gene57721:CDS |
| GGAAAATCCCTTTGATTGGA+TGG | 0.494213 | 8.3:+8822863 | MS.gene57721:CDS |
| ACATAAAATTTGTCGCTGAC+AGG | 0.498315 | 8.3:+8822701 | MS.gene57721:CDS |
| AATAAAGTCCATCCAATCAA+AGG | 0.508574 | 8.3:-8822871 | None:intergenic |
| CTCCTATGATGTACAACACT+GGG | 0.518556 | 8.3:+8821129 | MS.gene57721:CDS |
| AGTTCTTCCCATCATCTTGG+AGG | 0.524128 | 8.3:-8823296 | None:intergenic |
| GAGACAGCTAGATTTCGAAC+GGG | 0.536560 | 8.3:+8822576 | MS.gene57721:CDS |
| ATAAAGTCCATCCAATCAAA+GGG | 0.536591 | 8.3:-8822870 | None:intergenic |
| TGCCCAGTGTTGTACATCAT+AGG | 0.537246 | 8.3:-8821131 | None:intergenic |
| ATGTCAAGCCTCCAAGATGA+TGG | 0.539662 | 8.3:+8823288 | MS.gene57721:CDS |
| AAAATCTTCCTTGTGTTGCA+AGG | 0.541514 | 8.3:+8821842 | MS.gene57721:CDS |
| GTGTTGCAAGGAAGGCTGAA+TGG | 0.543120 | 8.3:+8821854 | MS.gene57721:CDS |
| AAGTCTCTCCGCAAATGAAG+TGG | 0.544352 | 8.3:-8822152 | None:intergenic |
| GCCAATCAATGCACAAGGGA+GGG | 0.550023 | 8.3:-8822653 | None:intergenic |
| TGTTGCAAGGAAGGCTGAAT+GGG | 0.552298 | 8.3:+8821855 | MS.gene57721:CDS |
| TTGGCTTTGCATGTGTTGAA+GGG | 0.555305 | 8.3:+8822176 | MS.gene57721:CDS |
| TGAGACAGCTAGATTTCGAA+CGG | 0.575367 | 8.3:+8822575 | MS.gene57721:CDS |
| TCAGCCTTCCTTGCAACACA+AGG | 0.584139 | 8.3:-8821850 | None:intergenic |
| AGAGATGTATAGCTTGCTGT+TGG | 0.591810 | 8.3:+8821768 | MS.gene57721:intron |
| TGCCAATCAATGCACAAGGG+AGG | 0.592084 | 8.3:-8822654 | None:intergenic |
| TCTCCTATGATGTACAACAC+TGG | 0.592747 | 8.3:+8821128 | MS.gene57721:CDS |
| TGCCCTTTCAGGTTTCCTTG+GGG | 0.594621 | 8.3:+8822820 | MS.gene57721:intron |
| AAGTTGGTTGACAGCTGAAG+AGG | 0.595614 | 8.3:+8821099 | MS.gene57721:intron |
| GCTGAAGCCAGTTTCTGGAC+CGG | 0.596341 | 8.3:+8820387 | MS.gene57721:CDS |
| AACATGATTGAGCAGAGGAA+AGG | 0.603731 | 8.3:+8823218 | MS.gene57721:intron |
| TGTCAAGCCTCCAAGATGAT+GGG | 0.607267 | 8.3:+8823289 | MS.gene57721:CDS |
| TTCATGCCAATCAATGCACA+AGG | 0.618751 | 8.3:-8822658 | None:intergenic |
| TATGAAGTGCTTCTCAGAGT+CGG | 0.621934 | 8.3:-8821161 | None:intergenic |
| AAGGGTGGGTGATTATCAGA+AGG | 0.633466 | 8.3:+8823257 | MS.gene57721:CDS |
| GTGCTTCTCAGAGTCGGACA+AGG | 0.636420 | 8.3:-8821155 | None:intergenic |
| GAGGGCATCACAGACAAACT+CGG | 0.641352 | 8.3:-8822635 | None:intergenic |
| TCATTTGAGAATGTCAGACC+CGG | 0.642175 | 8.3:-8822382 | None:intergenic |
| GAATGATGTTCAAATTCCGG+AGG | 0.652575 | 8.3:+8821252 | MS.gene57721:CDS |
| GAGCTAATCTCTAGAGACGA+GGG | 0.653908 | 8.3:+8822403 | MS.gene57721:CDS |
| TGAGCTAATCTCTAGAGACG+AGG | 0.689131 | 8.3:+8822402 | MS.gene57721:CDS |
| TACTAATGAAACAAACACAG+AGG | 0.751367 | 8.3:+8820313 | None:intergenic |
| TCATGCCAATCAATGCACAA+GGG | 0.758595 | 8.3:-8822657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATTATATTTATTGAT+AGG | + | chr8.3:8821617-8821636 | MS.gene57721:intron | 10.0% |
| !! | GTAATTAAATCATATTAAAT+TGG | + | chr8.3:8820639-8820658 | MS.gene57721:intron | 10.0% |
| !! | TTATTAAAATTGAATGATCA+AGG | - | chr8.3:8821076-8821095 | None:intergenic | 15.0% |
| !!! | GAAAAAATTAAATTGTTGTT+TGG | - | chr8.3:8820609-8820628 | None:intergenic | 15.0% |
| !!! | TAATGTTTTGATATTAGTTT+TGG | + | chr8.3:8822515-8822534 | MS.gene57721:intron | 15.0% |
| !!! | TTATGTTAATTCTTCTTTTA+AGG | + | chr8.3:8821430-8821449 | MS.gene57721:intron | 15.0% |
| !! | AAAAGAAAAAATGTATGTAC+CGG | - | chr8.3:8820409-8820428 | None:intergenic | 20.0% |
| !! | AATAGTACAAAATTGAAGTT+TGG | - | chr8.3:8820495-8820514 | None:intergenic | 20.0% |
| !! | AATTTGTAATAGTAAAAGTC+TGG | + | chr8.3:8821950-8821969 | MS.gene57721:intron | 20.0% |
| !! | ATTATATTTATTGATAGGCT+CGG | + | chr8.3:8821622-8821641 | MS.gene57721:intron | 20.0% |
| !!! | AACTTTTGAAAAAGAAACAA+GGG | - | chr8.3:8822257-8822276 | None:intergenic | 20.0% |
| !!! | ACTTTTTCATTCATTAGTTT+TGG | + | chr8.3:8822473-8822492 | MS.gene57721:intron | 20.0% |
| !!! | TCAATTTTAATAACTGAAGT+TGG | + | chr8.3:8821083-8821102 | MS.gene57721:intron | 20.0% |
| !!! | TCTTGAAAAAATATTGACTT+AGG | + | chr8.3:8822956-8822975 | MS.gene57721:intron | 20.0% |
| !!! | TTAATTTTCGTAGTACTTTT+TGG | + | chr8.3:8821459-8821478 | MS.gene57721:intron | 20.0% |
| !!! | TTTTGAATGTATTTTGAAGA+TGG | + | chr8.3:8820897-8820916 | MS.gene57721:intron | 20.0% |
| ! | AAGGCAAAAATGATAAATCT+CGG | + | chr8.3:8822046-8822065 | MS.gene57721:intron | 25.0% |
| ! | AAGTAGTATGTGAAACTAAT+CGG | - | chr8.3:8821340-8821359 | None:intergenic | 25.0% |
| ! | AATTGTTAAAAAGTTAACCC+AGG | - | chr8.3:8821601-8821620 | None:intergenic | 25.0% |
| ! | ATCATGTACCAAAAATTGAT+TGG | + | chr8.3:8821977-8821996 | MS.gene57721:intron | 25.0% |
| ! | ATTGAATGATCAAGGTAAAA+AGG | - | chr8.3:8821068-8821087 | None:intergenic | 25.0% |
| ! | CAAAAATAAAACCACAAATC+AGG | - | chr8.3:8821746-8821765 | None:intergenic | 25.0% |
| ! | CAAACCATAATTGAAAAGAA+GGG | - | chr8.3:8822315-8822334 | None:intergenic | 25.0% |
| ! | GAAATATTATGATAAGGAAG+AGG | - | chr8.3:8821715-8821734 | None:intergenic | 25.0% |
| ! | TAGATGACAGAGAAAAATAA+TGG | - | chr8.3:8820456-8820475 | None:intergenic | 25.0% |
| ! | TATCCAATCACATAATACAA+TGG | + | chr8.3:8823181-8823200 | MS.gene57721:intron | 25.0% |
| ! | TCAATTATAGTTTCCAAAAG+TGG | - | chr8.3:8821009-8821028 | None:intergenic | 25.0% |
| ! | TTACTATTACAAATTGCAAC+AGG | - | chr8.3:8821945-8821964 | None:intergenic | 25.0% |
| ! | TTATATTTATTGATAGGCTC+GGG | + | chr8.3:8821623-8821642 | MS.gene57721:intron | 25.0% |
| !! | AATTTTCAGTGAAAGATTAG+AGG | + | chr8.3:8820845-8820864 | MS.gene57721:intron | 25.0% |
| !! | ATTTTATTCATCCCTTTCTT+TGG | + | chr8.3:8820512-8820531 | MS.gene57721:intron | 25.0% |
| !! | GAAAAATAATGGAAAAACAG+AGG | - | chr8.3:8820445-8820464 | None:intergenic | 25.0% |
| !! | TAGTGCAGTTATCTTTTAAA+GGG | + | chr8.3:8822079-8822098 | MS.gene57721:intron | 25.0% |
| !! | TATTAAATTGGTTTCTCTGA+AGG | + | chr8.3:8820651-8820670 | MS.gene57721:intron | 25.0% |
| !! | TGAGATATTTTCCAAAGAAA+GGG | - | chr8.3:8820526-8820545 | None:intergenic | 25.0% |
| !! | TTAGTGCAGTTATCTTTTAA+AGG | + | chr8.3:8822078-8822097 | MS.gene57721:intron | 25.0% |
| !! | TTGAGATATTTTCCAAAGAA+AGG | - | chr8.3:8820527-8820546 | None:intergenic | 25.0% |
| !! | TTTCCACGTTGTAAATTTTT+AGG | - | chr8.3:8822848-8822867 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGAACAACAATC+TGG | + | chr8.3:8820731-8820750 | MS.gene57721:intron | 25.0% |
| !!! | ATCAATTTTTGGTACATGAT+AGG | - | chr8.3:8821977-8821996 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTGGATGATTCAA+TGG | + | chr8.3:8822527-8822546 | MS.gene57721:intron | 25.0% |
| !!! | ATTTATCATTTTTGCCTTTC+TGG | - | chr8.3:8822044-8822063 | None:intergenic | 25.0% |
| !!! | CAAAAATTGATTGGTTTGAT+GGG | + | chr8.3:8821986-8822005 | MS.gene57721:intron | 25.0% |
| !!! | CAACTTTTGAAAAAGAAACA+AGG | - | chr8.3:8822258-8822277 | None:intergenic | 25.0% |
| !!! | GTTAATTCTTCTTTTAAGGA+TGG | + | chr8.3:8821434-8821453 | MS.gene57721:intron | 25.0% |
| !!! | TCAATTTTTGGTACATGATA+GGG | - | chr8.3:8821976-8821995 | None:intergenic | 25.0% |
| !!! | TCTTTGGTTTTATTCATATG+TGG | + | chr8.3:8821567-8821586 | MS.gene57721:intron | 25.0% |
| AAAGTTGTTTGTAGCGAATA+GGG | - | chr8.3:8820350-8820369 | None:intergenic | 30.0% | |
| AAGCCATTGTATTATGTGAT+TGG | - | chr8.3:8823187-8823206 | None:intergenic | 30.0% | |
| AATAAAGTCCATCCAATCAA+AGG | - | chr8.3:8822874-8822893 | None:intergenic | 30.0% | |
| AATAGCTTCTCATAATGCAT+GGG | + | chr8.3:8822121-8822140 | MS.gene57721:intron | 30.0% | |
| AGGGGAGAAATATTATGATA+AGG | - | chr8.3:8821721-8821740 | None:intergenic | 30.0% | |
| ATAAAGTCCATCCAATCAAA+GGG | - | chr8.3:8822873-8822892 | None:intergenic | 30.0% | |
| ATAAGTTCTTCTCCCAAAAT+TGG | + | chr8.3:8822776-8822795 | MS.gene57721:intron | 30.0% | |
| ATATTATGATAAGGAAGAGG+AGG | - | chr8.3:8821712-8821731 | None:intergenic | 30.0% | |
| CAAAACAAAATCACAACTCT+AGG | - | chr8.3:8821543-8821562 | None:intergenic | 30.0% | |
| GAAACTAATCGGTAAATTGA+GGG | - | chr8.3:8821329-8821348 | None:intergenic | 30.0% | |
| GAACAAACAATCAAAAGACA+AGG | - | chr8.3:8821521-8821540 | None:intergenic | 30.0% | |
| GAATGATAAAACAGATGTAG+TGG | - | chr8.3:8822938-8822957 | None:intergenic | 30.0% | |
| GCAAACCATAATTGAAAAGA+AGG | - | chr8.3:8822316-8822335 | None:intergenic | 30.0% | |
| GGCAAACTAGTTAAGTAAAT+AGG | - | chr8.3:8822294-8822313 | None:intergenic | 30.0% | |
| GTGTTTGTATCATGAAATAC+AGG | - | chr8.3:8822987-8823006 | None:intergenic | 30.0% | |
| TAAAAAGAGAGGATTAATGC+CGG | + | chr8.3:8822363-8822382 | MS.gene57721:CDS | 30.0% | |
| TAATAGCTTCTCATAATGCA+TGG | + | chr8.3:8822120-8822139 | MS.gene57721:intron | 30.0% | |
| TATTCGCTACAAACAACTTT+GGG | + | chr8.3:8820350-8820369 | MS.gene57721:CDS | 30.0% | |
| TCTGAATGATGTTCAAATTC+CGG | + | chr8.3:8821249-8821268 | MS.gene57721:CDS | 30.0% | |
| TGAAACTAATCGGTAAATTG+AGG | - | chr8.3:8821330-8821349 | None:intergenic | 30.0% | |
| TTAACATAAAGTACAGCCTA+AGG | - | chr8.3:8821419-8821438 | None:intergenic | 30.0% | |
| TTATAATTCCCATGTTACCA+AGG | - | chr8.3:8822760-8822779 | None:intergenic | 30.0% | |
| TTTGATGAGATTCTGATGAA+TGG | + | chr8.3:8820933-8820952 | MS.gene57721:intron | 30.0% | |
| ! | AAAATGTTTTCGTTTTGCCT+TGG | + | chr8.3:8822740-8822759 | MS.gene57721:intron | 30.0% |
| ! | AAAGACAAGGTGCTAAAATA+AGG | - | chr8.3:8821508-8821527 | None:intergenic | 30.0% |
| ! | AACAGATGTAGTGGAATAAA+TGG | - | chr8.3:8822929-8822948 | None:intergenic | 30.0% |
| ! | AGAGACACTAATTTGTGTAA+AGG | - | chr8.3:8820684-8820703 | None:intergenic | 30.0% |
| ! | CAGCGACAAATTTTATGTAT+TGG | - | chr8.3:8822699-8822718 | None:intergenic | 30.0% |
| ! | CCATCAAACCAATCAATTTT+TGG | - | chr8.3:8821988-8822007 | None:intergenic | 30.0% |
| ! | TTTGCCCTTCTTTTCAATTA+TGG | + | chr8.3:8822308-8822327 | MS.gene57721:intron | 30.0% |
| !! | ATATTCTGGCTTAAAAAGAG+AGG | + | chr8.3:8822352-8822371 | MS.gene57721:CDS | 30.0% |
| !! | CCAAAAATTGATTGGTTTGA+TGG | + | chr8.3:8821985-8822004 | MS.gene57721:intron | 30.0% |
| !! | TCTCTTTTTAAGCCAGAATA+TGG | - | chr8.3:8822353-8822372 | None:intergenic | 30.0% |
| !!! | GATTTTGTTTTGCTTCTCTT+TGG | + | chr8.3:8821551-8821570 | MS.gene57721:intron | 30.0% |
| AAAAAGAGAGGATTAATGCC+GGG | + | chr8.3:8822364-8822383 | MS.gene57721:CDS | 35.0% | |
| AAAATCTTCCTTGTGTTGCA+AGG | + | chr8.3:8821842-8821861 | MS.gene57721:CDS | 35.0% | |
| AAAGGGCAAAAAAGAAAAGC+GGG | - | chr8.3:8822808-8822827 | None:intergenic | 35.0% | |
| AATCTGATGTTGTACACCTT+AGG | + | chr8.3:8821400-8821419 | MS.gene57721:intron | 35.0% | |
| AATGCTTAAAACACTACCTC+CGG | - | chr8.3:8821271-8821290 | None:intergenic | 35.0% | |
| ACATAAAATTTGTCGCTGAC+AGG | + | chr8.3:8822701-8822720 | MS.gene57721:CDS | 35.0% | |
| ATAAAACCACAAATCAGGCA+AGG | - | chr8.3:8821741-8821760 | None:intergenic | 35.0% | |
| ATAAATTGAAGACTGAGCAG+TGG | + | chr8.3:8821377-8821396 | MS.gene57721:intron | 35.0% | |
| CAAAGTTGTTTGTAGCGAAT+AGG | - | chr8.3:8820351-8820370 | None:intergenic | 35.0% | |
| CATGCTATACAGGTAGTATT+TGG | + | chr8.3:8822447-8822466 | MS.gene57721:intron | 35.0% | |
| CTATGAATAAACTGCCAAGT+AGG | + | chr8.3:8821919-8821938 | MS.gene57721:intron | 35.0% | |
| CTATTCGCTACAAACAACTT+TGG | + | chr8.3:8820349-8820368 | MS.gene57721:CDS | 35.0% | |
| GAAAGGGCAAAAAAGAAAAG+CGG | - | chr8.3:8822809-8822828 | None:intergenic | 35.0% | |
| GACAATGAACACATGATGTT+TGG | + | chr8.3:8820783-8820802 | MS.gene57721:intron | 35.0% | |
| GCAATCGAGAATATTCATTC+TGG | + | chr8.3:8821666-8821685 | MS.gene57721:CDS | 35.0% | |
| GTGAAAGATTAGAGGATTTC+CGG | + | chr8.3:8820853-8820872 | MS.gene57721:intron | 35.0% | |
| GTGCCTAAAAATTTACAACG+TGG | + | chr8.3:8822842-8822861 | MS.gene57721:CDS | 35.0% | |
| GTTTCACATACTACTTGCTT+TGG | + | chr8.3:8821344-8821363 | MS.gene57721:intron | 35.0% | |
| TAAAACCACAAATCAGGCAA+GGG | - | chr8.3:8821740-8821759 | None:intergenic | 35.0% | |
| TCCATCAGATGTAGCAAAAA+AGG | - | chr8.3:8821200-8821219 | None:intergenic | 35.0% | |
| TTATAGTTTCCAAAAGTGGC+TGG | - | chr8.3:8821005-8821024 | None:intergenic | 35.0% | |
| ! | AAGGGATATTTTTCTCAGGA+AGG | + | chr8.3:8822194-8822213 | MS.gene57721:CDS | 35.0% |
| ! | ACTTTGGGAGATGTACAAAA+AGG | + | chr8.3:8820365-8820384 | MS.gene57721:CDS | 35.0% |
| ! | ATTTTGCTTGCATGCTATAC+AGG | + | chr8.3:8822437-8822456 | MS.gene57721:CDS | 35.0% |
| ! | GTTGAAGGGATATTTTTCTC+AGG | + | chr8.3:8822190-8822209 | MS.gene57721:CDS | 35.0% |
| ! | TACATCTGATGGAATCGTTT+TGG | + | chr8.3:8821207-8821226 | MS.gene57721:CDS | 35.0% |
| !! | CTTTTCTTTTTTGCCCTTTC+AGG | + | chr8.3:8822809-8822828 | MS.gene57721:intron | 35.0% |
| !! | GTTTTGGATGACGTTGTATA+AGG | + | chr8.3:8822489-8822508 | MS.gene57721:intron | 35.0% |
| !! | TATGTATTGGCTCATAAGCT+TGG | - | chr8.3:8822686-8822705 | None:intergenic | 35.0% |
| !!! | AACTTTTTTGAGAGAAGGGT+GGG | + | chr8.3:8823243-8823262 | MS.gene57721:CDS | 35.0% |
| !!! | CTTTGTTTTCAAGCTTGATG+AGG | + | chr8.3:8823317-8823336 | MS.gene57721:CDS | 35.0% |
| !!! | TGGAATCGTTTTGGAGAATT+TGG | + | chr8.3:8821216-8821235 | MS.gene57721:CDS | 35.0% |
| AAAACCACAAATCAGGCAAG+GGG | - | chr8.3:8821739-8821758 | None:intergenic | 40.0% | |
| AACATGATTGAGCAGAGGAA+AGG | + | chr8.3:8823218-8823237 | MS.gene57721:intron | 40.0% | |
| AATGATAAATCTCGGCGTTC+TGG | + | chr8.3:8822054-8822073 | MS.gene57721:intron | 40.0% | |
| ACGTGGAAAATCCCTTTGAT+TGG | + | chr8.3:8822859-8822878 | MS.gene57721:CDS | 40.0% | |
| AGTTCTTCTCCCAAAATTGG+TGG | + | chr8.3:8822779-8822798 | MS.gene57721:intron | 40.0% | |
| CAAAGTTCTTCCCATCATCT+TGG | - | chr8.3:8823302-8823321 | None:intergenic | 40.0% | |
| CACCCTTCTCTCAAAAAAGT+TGG | - | chr8.3:8823244-8823263 | None:intergenic | 40.0% | |
| CAGATGTAGCAAAAAAGGCA+AGG | - | chr8.3:8821195-8821214 | None:intergenic | 40.0% | |
| CTCCTATGATGTACAACACT+GGG | + | chr8.3:8821129-8821148 | MS.gene57721:CDS | 40.0% | |
| GAATGATGTTCAAATTCCGG+AGG | + | chr8.3:8821252-8821271 | MS.gene57721:CDS | 40.0% | |
| GGAAAATCCCTTTGATTGGA+TGG | + | chr8.3:8822863-8822882 | MS.gene57721:CDS | 40.0% | |
| TATGCAACATGATTGAGCAG+AGG | + | chr8.3:8823213-8823232 | MS.gene57721:intron | 40.0% | |
| TCATGCCAATCAATGCACAA+GGG | - | chr8.3:8822660-8822679 | None:intergenic | 40.0% | |
| TCATTTGAGAATGTCAGACC+CGG | - | chr8.3:8822385-8822404 | None:intergenic | 40.0% | |
| TCTCCTATGATGTACAACAC+TGG | + | chr8.3:8821128-8821147 | MS.gene57721:CDS | 40.0% | |
| TGAGACAGCTAGATTTCGAA+CGG | + | chr8.3:8822575-8822594 | MS.gene57721:CDS | 40.0% | |
| TTCAAAAGACACTCTGCAGT+CGG | - | chr8.3:8820827-8820846 | None:intergenic | 40.0% | |
| TTCATGCCAATCAATGCACA+AGG | - | chr8.3:8822661-8822680 | None:intergenic | 40.0% | |
| ! | TATGAAGTGCTTCTCAGAGT+CGG | - | chr8.3:8821164-8821183 | None:intergenic | 40.0% |
| !! | AGAGATGTATAGCTTGCTGT+TGG | + | chr8.3:8821768-8821787 | MS.gene57721:intron | 40.0% |
| !! | CATGTGTTCAAGTTGTACAC+CGG | - | chr8.3:8820875-8820894 | None:intergenic | 40.0% |
| !! | GTAAATTTTTAGGCACCCCA+AGG | - | chr8.3:8822838-8822857 | None:intergenic | 40.0% |
| !! | TCGTTTTGCCTTGGTAACAT+GGG | + | chr8.3:8822749-8822768 | MS.gene57721:intron | 40.0% |
| !! | TTCGTTTTGCCTTGGTAACA+TGG | + | chr8.3:8822748-8822767 | MS.gene57721:intron | 40.0% |
| !! | TTGGCTTTGCATGTGTTGAA+GGG | + | chr8.3:8822176-8822195 | MS.gene57721:CDS | 40.0% |
| !! | TTTTGGAGAATTTGGCTGCA+AGG | + | chr8.3:8821224-8821243 | MS.gene57721:CDS | 40.0% |
| !!! | AGGCCAACTTTTTTGAGAGA+AGG | + | chr8.3:8823238-8823257 | MS.gene57721:CDS | 40.0% |
| !!! | CAACTTTTTTGAGAGAAGGG+TGG | + | chr8.3:8823242-8823261 | MS.gene57721:CDS | 40.0% |
| !!! | GCCTTTTTTGCTACATCTGA+TGG | + | chr8.3:8821196-8821215 | MS.gene57721:CDS | 40.0% |
| !!! | GGCCAACTTTTTTGAGAGAA+GGG | + | chr8.3:8823239-8823258 | MS.gene57721:CDS | 40.0% |
| AAAAGGCTGAAGCCAGTTTC+TGG | + | chr8.3:8820382-8820401 | MS.gene57721:CDS | 45.0% | |
| AAGGGTGGGTGATTATCAGA+AGG | + | chr8.3:8823257-8823276 | MS.gene57721:CDS | 45.0% | |
| AAGTCTCTCCGCAAATGAAG+TGG | - | chr8.3:8822155-8822174 | None:intergenic | 45.0% | |
| AGTTCTTCCCATCATCTTGG+AGG | - | chr8.3:8823299-8823318 | None:intergenic | 45.0% | |
| ATACACTGGCAACACCAGAA+AGG | + | chr8.3:8822027-8822046 | MS.gene57721:intron | 45.0% | |
| ATGTCAAGCCTCCAAGATGA+TGG | + | chr8.3:8823288-8823307 | MS.gene57721:CDS | 45.0% | |
| ATTTGTCGCTGACAGGCTAT+TGG | + | chr8.3:8822708-8822727 | MS.gene57721:CDS | 45.0% | |
| CAAATTGCAACAGGCCTACT+TGG | - | chr8.3:8821936-8821955 | None:intergenic | 45.0% | |
| CGGTGTACAACTTGAACACA+TGG | + | chr8.3:8820873-8820892 | MS.gene57721:intron | 45.0% | |
| CTGCAGTTCCACTTCATTTG+CGG | + | chr8.3:8822144-8822163 | MS.gene57721:intron | 45.0% | |
| GAGACAGCTAGATTTCGAAC+GGG | + | chr8.3:8822576-8822595 | MS.gene57721:CDS | 45.0% | |
| TCAGCTTCTGTGCCATATTC+TGG | + | chr8.3:8822338-8822357 | MS.gene57721:intron | 45.0% | |
| TCATTTGCGGAGAGACTTGT+TGG | + | chr8.3:8822157-8822176 | MS.gene57721:CDS | 45.0% | |
| TCTTCCTTGTGTTGCAAGGA+AGG | + | chr8.3:8821846-8821865 | MS.gene57721:CDS | 45.0% | |
| TGCCCAGTGTTGTACATCAT+AGG | - | chr8.3:8821134-8821153 | None:intergenic | 45.0% | |
| TGTCAAGCCTCCAAGATGAT+GGG | + | chr8.3:8823289-8823308 | MS.gene57721:CDS | 45.0% | |
| TGTTGCAAGGAAGGCTGAAT+GGG | + | chr8.3:8821855-8821874 | MS.gene57721:CDS | 45.0% | |
| ! | AAGCGGGTAACCACCAATTT+TGG | - | chr8.3:8822792-8822811 | None:intergenic | 45.0% |
| ! | AAGTTGGTTGACAGCTGAAG+AGG | + | chr8.3:8821099-8821118 | MS.gene57721:intron | 45.0% |
| ! | AGCGGGTAACCACCAATTTT+GGG | - | chr8.3:8822791-8822810 | None:intergenic | 45.0% |
| ! | GAGCTAATCTCTAGAGACGA+GGG | + | chr8.3:8822403-8822422 | MS.gene57721:CDS | 45.0% |
| ! | TGAGCTAATCTCTAGAGACG+AGG | + | chr8.3:8822402-8822421 | MS.gene57721:CDS | 45.0% |
| !! | GGGCATTGAGTTGGATTAAC+AGG | + | chr8.3:8821875-8821894 | MS.gene57721:CDS | 45.0% |
| !! | GTTGGCTTTGCATGTGTTGA+AGG | + | chr8.3:8822175-8822194 | MS.gene57721:CDS | 45.0% |
| !! | TTGCCCTTTCAGGTTTCCTT+GGG | + | chr8.3:8822819-8822838 | MS.gene57721:intron | 45.0% |
| !! | TTTCCAAAAGTGGCTGGCTT+TGG | - | chr8.3:8820999-8821018 | None:intergenic | 45.0% |
| !! | TTTGCCCTTTCAGGTTTCCT+TGG | + | chr8.3:8822818-8822837 | MS.gene57721:intron | 45.0% |
| !!! | CTGGTGTTGCCAGTGTATTT+TGG | - | chr8.3:8822025-8822044 | None:intergenic | 45.0% |
| CACCCCAAGGAAACCTGAAA+GGG | - | chr8.3:8822825-8822844 | None:intergenic | 50.0% | |
| CATATGTGGCAGCACTTCCT+GGG | + | chr8.3:8821581-8821600 | MS.gene57721:intron | 50.0% | |
| CTGTCTCAGTAACAAGCTGC+AGG | - | chr8.3:8822563-8822582 | None:intergenic | 50.0% | |
| GCCAATCAATGCACAAGGGA+GGG | - | chr8.3:8822656-8822675 | None:intergenic | 50.0% | |
| GTGTTGCAAGGAAGGCTGAA+TGG | + | chr8.3:8821854-8821873 | MS.gene57721:CDS | 50.0% | |
| TCAGCCTTCCTTGCAACACA+AGG | - | chr8.3:8821853-8821872 | None:intergenic | 50.0% | |
| TCATATGTGGCAGCACTTCC+TGG | + | chr8.3:8821580-8821599 | MS.gene57721:intron | 50.0% | |
| TGATAGGCTCGGGCATTCTA+TGG | + | chr8.3:8821633-8821652 | MS.gene57721:intron | 50.0% | |
| TGCCAATCAATGCACAAGGG+AGG | - | chr8.3:8822657-8822676 | None:intergenic | 50.0% | |
| ! | GTATGTACCGGTCCAGAAAC+TGG | - | chr8.3:8820397-8820416 | None:intergenic | 50.0% |
| ! | TTCTCCCCTTGCCTGATTTG+TGG | + | chr8.3:8821732-8821751 | MS.gene57721:intron | 50.0% |
| !! | AGGCTGAATGGGCATTGAGT+TGG | + | chr8.3:8821866-8821885 | MS.gene57721:CDS | 50.0% |
| !! | GAGGGCATCACAGACAAACT+CGG | - | chr8.3:8822638-8822657 | None:intergenic | 50.0% |
| !! | TGCCCTTTCAGGTTTCCTTG+GGG | + | chr8.3:8822820-8822839 | MS.gene57721:intron | 50.0% |
| !! | TTGCCAAAGCCAGCCACTTT+TGG | + | chr8.3:8820993-8821012 | MS.gene57721:intron | 50.0% |
| !!! | GTTGCCAGTGTATTTTGGCC+TGG | - | chr8.3:8822020-8822039 | None:intergenic | 50.0% |
| CCTGCCAGGCCAAAATACAC+TGG | + | chr8.3:8822013-8822032 | MS.gene57721:intron | 55.0% | |
| GCACCCCAAGGAAACCTGAA+AGG | - | chr8.3:8822826-8822845 | None:intergenic | 55.0% | |
| GTGCTTCTCAGAGTCGGACA+AGG | - | chr8.3:8821158-8821177 | None:intergenic | 55.0% | |
| ! | GCCCTCCCTTGTGCATTGAT+TGG | + | chr8.3:8822652-8822671 | MS.gene57721:CDS | 55.0% |
| ! | GCTGAAGCCAGTTTCTGGAC+CGG | + | chr8.3:8820387-8820406 | MS.gene57721:CDS | 55.0% |
| !!! | CCAGTGTATTTTGGCCTGGC+AGG | - | chr8.3:8822016-8822035 | None:intergenic | 55.0% |
| !!! | TGTATTTTGGCCTGGCAGGC+TGG | - | chr8.3:8822012-8822031 | None:intergenic | 55.0% |
| CACTCTGCAGTCGGAGACGT+AGG | - | chr8.3:8820818-8820837 | None:intergenic | 60.0% | |
| ! | GTTTGATGGGCCAGCCTGCC+AGG | + | chr8.3:8821999-8822018 | MS.gene57721:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8820318 | 8823347 | 8820318 | ID=MS.gene57721 |
| chr8.3 | mRNA | 8820318 | 8823347 | 8820318 | ID=MS.gene57721.t1;Parent=MS.gene57721 |
| chr8.3 | exon | 8820318 | 8820408 | 8820318 | ID=MS.gene57721.t1.exon1;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8820318 | 8820408 | 8820318 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8821113 | 8821273 | 8821113 | ID=MS.gene57721.t1.exon2;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8821113 | 8821273 | 8821113 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8821639 | 8821687 | 8821639 | ID=MS.gene57721.t1.exon3;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8821639 | 8821687 | 8821639 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8821770 | 8821896 | 8821770 | ID=MS.gene57721.t1.exon4;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8821770 | 8821896 | 8821770 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8822150 | 8822215 | 8822150 | ID=MS.gene57721.t1.exon5;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8822150 | 8822215 | 8822150 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8822342 | 8822458 | 8822342 | ID=MS.gene57721.t1.exon6;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8822342 | 8822458 | 8822342 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8822567 | 8822729 | 8822567 | ID=MS.gene57721.t1.exon7;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8822567 | 8822729 | 8822567 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8822831 | 8822901 | 8822831 | ID=MS.gene57721.t1.exon8;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8822831 | 8822901 | 8822831 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| chr8.3 | exon | 8823233 | 8823347 | 8823233 | ID=MS.gene57721.t1.exon9;Parent=MS.gene57721.t1 |
| chr8.3 | CDS | 8823233 | 8823347 | 8823233 | ID=cds.MS.gene57721.t1;Parent=MS.gene57721.t1 |
| Gene Sequence |
| Protein sequence |
