AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58030.t1 MTR_4g115460 94.388 392 22 0 1 392 73 464 0.0 782
MS.gene58030.t1 MTR_4g115540 62.755 392 140 3 3 390 235 624 0.0 523
MS.gene58030.t1 MTR_4g115530 58.524 393 156 4 4 392 3 392 6.19e-165 468
MS.gene58030.t1 MTR_4g115530 59.706 340 131 3 57 392 1 338 7.15e-145 415
MS.gene58030.t1 MTR_7g103260 52.591 386 175 5 5 390 20 397 6.82e-142 409
MS.gene58030.t1 MTR_7g103270 51.671 389 178 6 3 390 19 398 2.10e-141 408
MS.gene58030.t1 MTR_3g097310 53.093 388 174 5 5 390 110 491 7.37e-139 405
MS.gene58030.t1 MTR_3g081240 52.174 391 175 6 4 388 60 444 4.50e-138 401
MS.gene58030.t1 MTR_3g080690 51.276 392 181 6 1 388 57 442 5.60e-138 401
MS.gene58030.t1 MTR_1g061760 51.671 389 175 6 5 390 106 484 1.65e-134 394
MS.gene58030.t1 MTR_4g115540 60.396 303 114 3 3 301 235 535 2.09e-132 390
MS.gene58030.t1 MTR_3g106690 53.936 343 153 3 50 390 52 391 5.25e-130 379
MS.gene58030.t1 MTR_1g006600 42.119 387 197 7 8 386 216 583 1.89e-94 294
MS.gene58030.t1 MTR_3g110198 40.568 387 203 8 8 386 223 590 5.64e-94 293
MS.gene58030.t1 MTR_7g103150 40.885 384 206 8 8 386 114 481 1.66e-92 286
MS.gene58030.t1 MTR_4g100730 41.919 396 210 10 1 387 149 533 6.00e-91 284
MS.gene58030.t1 MTR_1g090733 42.297 357 182 8 43 390 208 549 8.09e-90 281
MS.gene58030.t1 MTR_3g110200 41.880 351 187 9 43 386 247 587 1.94e-88 279
MS.gene58030.t1 MTR_8g102840 39.386 391 214 8 7 389 237 612 5.02e-88 278
MS.gene58030.t1 MTR_5g031480 35.393 356 208 10 41 389 74 414 1.11e-68 223
MS.gene58030.t1 MTR_5g049790 35.795 352 196 11 41 389 110 434 4.51e-65 214
MS.gene58030.t1 MTR_8g102840 36.027 297 170 7 7 298 237 518 3.71e-56 193
MS.gene58030.t1 MTR_7g085840 32.865 356 192 12 57 392 1 329 1.93e-49 170
MS.gene58030.t1 MTR_5g031480 34.926 272 155 10 41 305 74 330 3.24e-41 148
MS.gene58030.t1 MTR_5g031480 34.520 281 158 11 41 314 74 335 1.80e-40 147
MS.gene58030.t1 MTR_5g049790 34.821 224 128 9 41 261 110 318 9.18e-31 120
MS.gene58030.t1 MTR_5g049790 34.821 224 128 9 41 261 127 335 1.11e-30 120
MS.gene58030.t1 MTR_8g096140 27.063 303 194 8 98 381 90 384 8.10e-29 116
MS.gene58030.t1 MTR_8g096160 27.063 303 194 8 98 381 90 384 1.93e-28 115
MS.gene58030.t1 MTR_2g084245 26.420 352 224 13 56 381 84 426 6.16e-25 105
MS.gene58030.t1 MTR_4g057500 25.066 379 247 10 30 381 76 444 5.73e-23 100
MS.gene58030.t1 MTR_8g080490 29.032 310 182 13 104 392 117 409 3.01e-21 95.1
MS.gene58030.t1 MTR_4g077920 26.708 322 190 10 104 390 101 411 2.44e-20 92.8
MS.gene58030.t1 MTR_4g077920 28.571 252 159 7 154 390 224 469 6.33e-20 91.7
MS.gene58030.t1 MTR_4g077920 29.614 233 143 7 154 371 224 450 4.36e-19 89.0
MS.gene58030.t1 MTR_3g037720 29.289 239 151 6 154 381 239 470 1.95e-18 87.4
MS.gene58030.t1 MTR_3g085480 27.181 298 181 12 104 381 119 400 4.38e-18 85.9
MS.gene58030.t1 MTR_4g084200 24.359 312 189 12 104 392 163 450 4.40e-16 80.1
MS.gene58030.t1 MTR_6g027310 27.419 248 165 6 154 392 235 476 5.84e-16 79.7
MS.gene58030.t1 MTR_7g087100 26.804 291 189 10 104 381 191 470 2.01e-15 78.2
MS.gene58030.t1 MTR_1g029350 24.363 353 209 14 62 378 75 405 2.66e-14 74.3
MS.gene58030.t1 MTR_1g097090 24.839 310 207 8 80 365 116 423 2.46e-11 65.5
MS.gene58030.t1 MTR_1g097090 24.839 310 207 8 80 365 116 423 2.90e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58030.t1 AT5G20260 65.455 385 129 3 8 391 85 466 0.0 539
MS.gene58030.t1 AT5G20260 66.276 341 112 2 52 391 23 361 1.39e-172 486
MS.gene58030.t1 AT5G20260 66.369 336 110 2 57 391 1 334 1.61e-170 479
MS.gene58030.t1 AT3G42180 58.942 397 154 3 2 391 75 469 3.14e-168 479
MS.gene58030.t1 AT5G11130 56.777 391 161 3 7 392 91 478 3.11e-167 477
MS.gene58030.t1 AT3G42180 60.234 342 127 3 57 391 1 340 2.31e-154 439
MS.gene58030.t1 AT5G11130 57.738 336 140 1 57 392 1 334 5.39e-152 432
MS.gene58030.t1 AT5G33290 59.155 355 136 3 43 390 146 498 1.98e-150 435
MS.gene58030.t1 AT5G03795 52.564 390 173 5 3 390 136 515 7.07e-137 401
MS.gene58030.t1 AT3G07620 50.258 388 184 4 7 390 76 458 1.81e-134 393
MS.gene58030.t1 AT5G25310 47.970 394 179 6 8 390 101 479 4.28e-129 380
MS.gene58030.t1 AT4G16745 42.487 386 203 8 9 387 156 529 1.93e-98 303
MS.gene58030.t1 AT5G25820 43.143 350 187 6 43 386 306 649 1.31e-89 284
MS.gene58030.t1 AT5G19670 40.688 349 195 5 43 386 263 604 2.17e-88 279
MS.gene58030.t1 AT5G19670 40.688 349 195 5 43 386 263 604 2.17e-88 279
MS.gene58030.t1 AT4G16745 41.287 373 197 9 9 371 156 516 9.67e-88 277
MS.gene58030.t1 AT4G32790 40.115 349 197 6 43 386 249 590 2.25e-86 273
MS.gene58030.t1 AT4G32790 40.115 349 197 6 43 386 249 590 2.25e-86 273
MS.gene58030.t1 AT4G32790 40.115 349 197 6 43 386 249 590 2.25e-86 273
MS.gene58030.t1 AT5G11610 38.346 399 212 14 2 386 164 542 1.28e-84 268
MS.gene58030.t1 AT5G37000 36.082 388 217 8 9 386 182 548 1.25e-79 255
MS.gene58030.t1 AT4G38040 37.057 367 208 10 24 384 70 419 3.29e-74 237
MS.gene58030.t1 AT4G38040 35.860 343 197 10 24 360 70 395 5.51e-63 207
MS.gene58030.t1 AT5G11610 34.211 304 169 12 2 293 164 448 1.76e-46 165
MS.gene58030.t1 AT1G27440 29.703 303 186 8 98 381 86 380 1.92e-34 132
MS.gene58030.t1 AT5G61840 28.713 303 189 8 98 381 89 383 3.30e-32 126
MS.gene58030.t1 AT5G22940 27.848 316 186 11 102 389 153 454 1.89e-25 107
MS.gene58030.t1 AT5G22940 27.532 316 187 11 102 389 182 483 2.04e-25 108
MS.gene58030.t1 AT5G11610 33.898 177 98 7 2 170 164 329 2.33e-21 94.7
MS.gene58030.t1 AT2G28110 25.658 304 193 10 102 381 139 433 5.46e-21 94.7
MS.gene58030.t1 AT1G67410 28.076 317 199 10 83 381 101 406 2.89e-19 89.4
MS.gene58030.t1 AT5G16890 27.381 252 162 6 154 390 230 475 1.83e-17 84.3
MS.gene58030.t1 AT1G21480 25.575 348 213 15 61 378 89 420 1.10e-15 79.0
MS.gene58030.t1 AT1G74680 28.870 239 152 6 154 381 201 432 2.83e-15 77.8
MS.gene58030.t1 AT3G45400 25.939 293 193 11 102 381 155 436 1.19e-14 75.9
MS.gene58030.t1 AT1G21480 25.879 313 186 15 61 343 89 385 2.01e-13 71.6
MS.gene58030.t1 AT2G35100 25.076 327 188 15 92 392 117 412 2.93e-13 71.2
MS.gene58030.t1 AT3G03650 28.395 243 148 9 154 382 245 475 4.36e-13 70.9
MS.gene58030.t1 AT5G44930 24.918 305 188 13 104 392 129 408 7.12e-12 67.0
MS.gene58030.t1 AT5G44930 24.918 305 188 13 104 392 129 408 7.12e-12 67.0

Find 86 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATGCAATTTCAAGTATT+TGG 0.110818 8.3:-11163009 None:intergenic
TCTATACTTGCTTTCTTTGC+TGG 0.242144 8.3:+11162663 MS.gene58030:CDS
TAACCTCGTAGGTTCATTTC+AGG 0.252052 8.3:-11162597 None:intergenic
TCTGGATTGTGGGTCGAAAA+TGG 0.253263 8.3:-11162148 None:intergenic
AGCAAGTATAGAACGATTAT+TGG 0.276848 8.3:-11162652 None:intergenic
TGCTAGTATCTTGTCATGAT+TGG 0.291031 8.3:+11162341 MS.gene58030:CDS
GCAAGTATAGAACGATTATT+GGG 0.296669 8.3:-11162651 None:intergenic
ATTTCACTTATCCTCTTTGA+TGG 0.296990 8.3:-11162957 None:intergenic
ATATGATTCTTCATTCAATA+TGG 0.299138 8.3:+11163096 MS.gene58030:CDS
CCTTGACTATTATAACTTCA+TGG 0.304105 8.3:+11162776 MS.gene58030:CDS
CACGATGTTTGTAACACTTA+AGG 0.337609 8.3:-11162194 None:intergenic
TTGGGGTCTTGGCTTGGAAT+TGG 0.358055 8.3:-11162633 None:intergenic
GAAAGACATTACTAGATCAT+TGG 0.372966 8.3:+11162706 MS.gene58030:CDS
TAGAACGATTATTGGGGTCT+TGG 0.380572 8.3:-11162644 None:intergenic
ACAAATATACATACTGGAAT+AGG 0.400120 8.3:+11162299 MS.gene58030:CDS
CGATTATTGGGGTCTTGGCT+TGG 0.400208 8.3:-11162639 None:intergenic
GCTAGTATCTTGTCATGATT+GGG 0.406660 8.3:+11162342 MS.gene58030:CDS
ATGTGTCCCTGTGATTATTT+CGG 0.410414 8.3:+11162875 MS.gene58030:CDS
GAACTCTCTCTTGAGATATC+TGG 0.413598 8.3:-11162486 None:intergenic
GGCTTAGAAGACTTAATATC+AGG 0.413995 8.3:+11163117 MS.gene58030:CDS
AGGTGGTGAGAGGATTGTAT+AGG 0.417312 8.3:-11162222 None:intergenic
ATTTCTGTAAACACATCCTC+TGG 0.417360 8.3:-11160890 None:intergenic
ACGATGTTTGTAACACTTAA+GGG 0.422105 8.3:-11162193 None:intergenic
GTGAGAATTGAACAAGAGTT+GGG 0.423478 8.3:+11160790 MS.gene58030:CDS
TTCTTTGCTGGAGGGGAACA+TGG 0.426896 8.3:+11162675 MS.gene58030:CDS
CCTTTAGTGATGTTCTTGAT+TGG 0.432626 8.3:+11162913 MS.gene58030:CDS
TAGCTCACAAATATACATAC+TGG 0.446526 8.3:+11162293 MS.gene58030:CDS
GGACCCATGAGTTCAATTTA+CGG 0.449067 8.3:+11162082 MS.gene58030:CDS
AGTGAGAATTGAACAAGAGT+TGG 0.451478 8.3:+11160789 MS.gene58030:CDS
TTTATAGACTCCACAAGTCT+AGG 0.456468 8.3:-11162846 None:intergenic
ATGGGTCCATCATGGACTAA+TGG 0.462703 8.3:-11162067 None:intergenic
ATAAAGACATGAGCCTCATC+TGG 0.467668 8.3:-11162166 None:intergenic
ATCATATGGAACACATCAAA+TGG 0.468399 8.3:-11163080 None:intergenic
GATATCTCAAGAGAGAGTTC+AGG 0.482093 8.3:+11162489 MS.gene58030:CDS
CCAATCAAGAACATCACTAA+AGG 0.485979 8.3:-11162913 None:intergenic
TGCAATGCCAACACTTCTGA+AGG 0.487656 8.3:+11162546 MS.gene58030:CDS
CTTGACTATTATAACTTCAT+GGG 0.493869 8.3:+11162777 MS.gene58030:CDS
TACTTGCTTTCTTTGCTGGA+GGG 0.494336 8.3:+11162667 MS.gene58030:CDS
ACTTGCTTTCTTTGCTGGAG+GGG 0.497780 8.3:+11162668 MS.gene58030:CDS
ATACTTGCTTTCTTTGCTGG+AGG 0.505445 8.3:+11162666 MS.gene58030:CDS
AACACATCAAATGGTTTAGC+TGG 0.509660 8.3:-11163071 None:intergenic
GATGCCGTAAATTGAACTCA+TGG 0.512290 8.3:-11162086 None:intergenic
ATGAGCCTCATCTGGATTGT+GGG 0.513641 8.3:-11162158 None:intergenic
CAATCAAGAACATCACTAAA+GGG 0.519860 8.3:-11162912 None:intergenic
CATGAGCCTCATCTGGATTG+TGG 0.521580 8.3:-11162159 None:intergenic
ATCAAACCCTTCAGAAGTGT+TGG 0.526802 8.3:-11162553 None:intergenic
AATACTTGAAATTGCATAGG+AGG 0.530615 8.3:+11163012 MS.gene58030:CDS
ATCCTCTCACCACCTACTCT+AGG 0.536514 8.3:+11162230 MS.gene58030:CDS
TCCTCTCACCACCTACTCTA+GGG 0.546196 8.3:+11162231 MS.gene58030:CDS
TTGAACTCATGGGTCCATCA+TGG 0.546538 8.3:-11162075 None:intergenic
CCATGAAGTTATAATAGTCA+AGG 0.546984 8.3:-11162776 None:intergenic
ACATCAAATGGTTTAGCTGG+TGG 0.550230 8.3:-11163068 None:intergenic
CATTGCATATTCCATCAAAG+AGG 0.550546 8.3:+11162946 MS.gene58030:CDS
TTATAGACTCCACAAGTCTA+GGG 0.556414 8.3:-11162845 None:intergenic
ATATTGAATGAAGAATCATA+TGG 0.569350 8.3:-11163094 None:intergenic
TTTCTGTAAACACATCCTCT+GGG 0.571966 8.3:-11160889 None:intergenic
TATGATGTTGGTATAATCAA+TGG 0.573069 8.3:-11162272 None:intergenic
CTAGCTACTTCATAGCCACT+AGG 0.575455 8.3:-11162822 None:intergenic
ATGCCGTAAATTGAACTCAT+GGG 0.576487 8.3:-11162085 None:intergenic
AGTTCAATTTACGGCATCGA+GGG 0.576949 8.3:+11162091 MS.gene58030:CDS
TAGTTATCCGAAATAATCAC+AGG 0.577606 8.3:-11162882 None:intergenic
CCAAATACTTGAAATTGCAT+AGG 0.578554 8.3:+11163009 MS.gene58030:CDS
TATGTTACTTAACTGATGAA+AGG 0.584836 8.3:-11160920 None:intergenic
AGTAGCTAGCCCTAGACTTG+TGG 0.585836 8.3:+11162836 MS.gene58030:CDS
AATTTCAAGTATTTGGCATG+TGG 0.589637 8.3:-11163002 None:intergenic
GAACCACCATTAGTCCATGA+TGG 0.592867 8.3:+11162061 MS.gene58030:CDS
TGTTGAAGAGATTCAAAGTG+TGG 0.597057 8.3:+11162023 MS.gene58030:CDS
CAAATTGTCAAATATCAAAG+TGG 0.601264 8.3:-11163143 None:intergenic
CTTGTGGAGTCTATAAACAC+TGG 0.611159 8.3:+11162852 MS.gene58030:CDS
AAAGTGTGGACTTACAAAGA+AGG 0.614004 8.3:+11162037 MS.gene58030:CDS
ACATACTGGAATAGGAGCAA+AGG 0.616663 8.3:+11162307 MS.gene58030:CDS
GCAATGCCAACACTTCTGAA+GGG 0.617080 8.3:+11162547 MS.gene58030:CDS
CATGAGTTGATCCCTAGAGT+AGG 0.623286 8.3:-11162242 None:intergenic
TTCGACCCACAATCCAGATG+AGG 0.623560 8.3:+11162153 MS.gene58030:CDS
ATATTTGTGAGCTATGATGT+TGG 0.628553 8.3:-11162284 None:intergenic
ATACTTGAAATTGCATAGGA+GGG 0.629608 8.3:+11163013 MS.gene58030:CDS
TCCCTAGAGTAGGTGGTGAG+AGG 0.630441 8.3:-11162232 None:intergenic
GAGTTGATCCCTAGAGTAGG+TGG 0.634706 8.3:-11162239 None:intergenic
GGTCCATCATGGACTAATGG+TGG 0.652143 8.3:-11162064 None:intergenic
ACATTACTAGATCATTGGAA+AGG 0.655493 8.3:+11162711 MS.gene58030:CDS
GAGTTCAATTTACGGCATCG+AGG 0.664849 8.3:+11162090 MS.gene58030:CDS
AGCTCAACTTGTAACCTCGT+AGG 0.674415 8.3:-11162608 None:intergenic
TTCTGTAAACACATCCTCTG+GGG 0.683614 8.3:-11160888 None:intergenic
AGTTATCCGAAATAATCACA+GGG 0.706311 8.3:-11162881 None:intergenic
CAAGTATAGAACGATTATTG+GGG 0.712230 8.3:-11162650 None:intergenic
ATGCCTGAAATGAACCTACG+AGG 0.781179 8.3:+11162594 MS.gene58030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATATAAATAAATAAG+TGG - chr8.3:11161950-11161969 None:intergenic 10.0%
!!! AATTTTTTGAAATAAGAAAT+AGG - chr8.3:11161170-11161189 None:intergenic 10.0%
!!! ATACGTTTTTTTTTTTTTTA+AGG + chr8.3:11161121-11161140 MS.gene58030:intron 10.0%
!! TAATTTCAAACTCTTATAAT+TGG - chr8.3:11161356-11161375 None:intergenic 15.0%
!! TATATTGGTGAAATTAAAAT+AGG + chr8.3:11161305-11161324 MS.gene58030:intron 15.0%
!!! ATTATTTTCTTCAACATATA+TGG + chr8.3:11161431-11161450 MS.gene58030:intron 15.0%
!!! GATGTAAATTTAATTTATAG+TGG + chr8.3:11161277-11161296 MS.gene58030:intron 15.0%
!! AAAAATGTTTATTTGACTCT+TGG - chr8.3:11161635-11161654 None:intergenic 20.0%
!! AAATTTACATCAACTTAGTA+AGG - chr8.3:11161268-11161287 None:intergenic 20.0%
!! ATAAAAACGTTCACATTATA+AGG + chr8.3:11161527-11161546 MS.gene58030:intron 20.0%
!! ATAAATAAATAAGTGGTACA+TGG - chr8.3:11161943-11161962 None:intergenic 20.0%
!! ATATGATTCTTCATTCAATA+TGG + chr8.3:11163096-11163115 MS.gene58030:CDS 20.0%
!! ATATTGAATGAAGAATCATA+TGG - chr8.3:11163097-11163116 None:intergenic 20.0%
!! TTGCATTTAATGAAAAAAGA+TGG - chr8.3:11161684-11161703 None:intergenic 20.0%
!!! TTATAATAGTCAAGGTTTTT+AGG - chr8.3:11162771-11162790 None:intergenic 20.0%
! ACAAATATACATACTGGAAT+AGG + chr8.3:11162299-11162318 MS.gene58030:CDS 25.0%
! ATTTGATCAAGTTAATTGCA+AGG - chr8.3:11161056-11161075 None:intergenic 25.0%
! CTATGCATCATTAAAAAGTA+AGG - chr8.3:11162446-11162465 None:intergenic 25.0%
! CTTGACTATTATAACTTCAT+GGG + chr8.3:11162777-11162796 MS.gene58030:CDS 25.0%
! GTGAGTAAATATTCAACATT+TGG - chr8.3:11162387-11162406 None:intergenic 25.0%
! TATGATGTTGGTATAATCAA+TGG - chr8.3:11162275-11162294 None:intergenic 25.0%
! TTTATAGTGGCTACATATAT+TGG + chr8.3:11161290-11161309 MS.gene58030:intron 25.0%
!! TATGTTACTTAACTGATGAA+AGG - chr8.3:11160923-11160942 None:intergenic 25.0%
!! TGGTAATGACTTATGATATA+TGG - chr8.3:11161923-11161942 None:intergenic 25.0%
!!! AATATTCAACATTTGGTGTA+TGG - chr8.3:11162380-11162399 None:intergenic 25.0%
!!! CATAGTAATTAATTTGTTGC+AGG + chr8.3:11162461-11162480 MS.gene58030:intron 25.0%
!!! TTCATCATAGCGAATTTTTT+GGG - chr8.3:11161827-11161846 None:intergenic 25.0%
AATACTTGAAATTGCATAGG+AGG + chr8.3:11163012-11163031 MS.gene58030:CDS 30.0%
ACATTACTAGATCATTGGAA+AGG + chr8.3:11162711-11162730 MS.gene58030:CDS 30.0%
ACGATGTTTGTAACACTTAA+GGG - chr8.3:11162196-11162215 None:intergenic 30.0%
AGCAAGTATAGAACGATTAT+TGG - chr8.3:11162655-11162674 None:intergenic 30.0%
AGTTATCCGAAATAATCACA+GGG - chr8.3:11162884-11162903 None:intergenic 30.0%
ATACTTGAAATTGCATAGGA+GGG + chr8.3:11163013-11163032 MS.gene58030:CDS 30.0%
ATATATGGATATTTGTGTCG+TGG + chr8.3:11161446-11161465 MS.gene58030:intron 30.0%
ATATTTGTGAGCTATGATGT+TGG - chr8.3:11162287-11162306 None:intergenic 30.0%
ATCATATGGAACACATCAAA+TGG - chr8.3:11163083-11163102 None:intergenic 30.0%
ATTTCACTTATCCTCTTTGA+TGG - chr8.3:11162960-11162979 None:intergenic 30.0%
CAAGTATAGAACGATTATTG+GGG - chr8.3:11162653-11162672 None:intergenic 30.0%
CAATCAAGAACATCACTAAA+GGG - chr8.3:11162915-11162934 None:intergenic 30.0%
CCAAATACTTGAAATTGCAT+AGG + chr8.3:11163009-11163028 MS.gene58030:CDS 30.0%
CCATGAAGTTATAATAGTCA+AGG - chr8.3:11162779-11162798 None:intergenic 30.0%
CCTTGACTATTATAACTTCA+TGG + chr8.3:11162776-11162795 MS.gene58030:CDS 30.0%
GAAAGACATTACTAGATCAT+TGG + chr8.3:11162706-11162725 MS.gene58030:CDS 30.0%
GCAAGTATAGAACGATTATT+GGG - chr8.3:11162654-11162673 None:intergenic 30.0%
GGTGAAATTAAAATAGGTGT+TGG + chr8.3:11161311-11161330 MS.gene58030:intron 30.0%
TAGCTCACAAATATACATAC+TGG + chr8.3:11162293-11162312 MS.gene58030:CDS 30.0%
TAGTTATCCGAAATAATCAC+AGG - chr8.3:11162885-11162904 None:intergenic 30.0%
TGTGTGAGTTTAAATTTCAG+TGG - chr8.3:11160988-11161007 None:intergenic 30.0%
! AATTTCAAGTATTTGGCATG+TGG - chr8.3:11163005-11163024 None:intergenic 30.0%
! CCTATGCAATTTCAAGTATT+TGG - chr8.3:11163012-11163031 None:intergenic 30.0%
!! AGGTGTTGGAATAGTTAAAA+GGG + chr8.3:11161325-11161344 MS.gene58030:intron 30.0%
!! TAGGTGTTGGAATAGTTAAA+AGG + chr8.3:11161324-11161343 MS.gene58030:intron 30.0%
!!! GTTCATCATAGCGAATTTTT+TGG - chr8.3:11161828-11161847 None:intergenic 30.0%
AAAGTGTGGACTTACAAAGA+AGG + chr8.3:11162037-11162056 MS.gene58030:CDS 35.0%
AACACATCAAATGGTTTAGC+TGG - chr8.3:11163074-11163093 None:intergenic 35.0%
ACACAACAACTGTTAGATCT+GGG + chr8.3:11161005-11161024 MS.gene58030:intron 35.0%
AGTGAGAATTGAACAAGAGT+TGG + chr8.3:11160789-11160808 MS.gene58030:CDS 35.0%
ATGCCGTAAATTGAACTCAT+GGG - chr8.3:11162088-11162107 None:intergenic 35.0%
ATGTATAGGGACTACCAAAA+AGG - chr8.3:11161896-11161915 None:intergenic 35.0%
ATGTGTCCCTGTGATTATTT+CGG + chr8.3:11162875-11162894 MS.gene58030:CDS 35.0%
ATTTCTGTAAACACATCCTC+TGG - chr8.3:11160893-11160912 None:intergenic 35.0%
CACGATGTTTGTAACACTTA+AGG - chr8.3:11162197-11162216 None:intergenic 35.0%
CATTGCATATTCCATCAAAG+AGG + chr8.3:11162946-11162965 MS.gene58030:CDS 35.0%
CCAATCAAGAACATCACTAA+AGG - chr8.3:11162916-11162935 None:intergenic 35.0%
CCTTTAGTGATGTTCTTGAT+TGG + chr8.3:11162913-11162932 MS.gene58030:CDS 35.0%
GATATATGGTCCCATGTATA+GGG - chr8.3:11161909-11161928 None:intergenic 35.0%
GATCAAGTTAATTGCAAGGT+CGG - chr8.3:11161052-11161071 None:intergenic 35.0%
GCTAGTATCTTGTCATGATT+GGG + chr8.3:11162342-11162361 MS.gene58030:CDS 35.0%
GGCTTAGAAGACTTAATATC+AGG + chr8.3:11163117-11163136 MS.gene58030:CDS 35.0%
GTGAGAATTGAACAAGAGTT+GGG + chr8.3:11160790-11160809 MS.gene58030:CDS 35.0%
TCTATACTTGCTTTCTTTGC+TGG + chr8.3:11162663-11162682 MS.gene58030:CDS 35.0%
TGATATATGGTCCCATGTAT+AGG - chr8.3:11161910-11161929 None:intergenic 35.0%
TGCTAGTATCTTGTCATGAT+TGG + chr8.3:11162341-11162360 MS.gene58030:CDS 35.0%
TGTATAGGGACTACCAAAAA+GGG - chr8.3:11161895-11161914 None:intergenic 35.0%
TGTTGAAGAGATTCAAAGTG+TGG + chr8.3:11162023-11162042 MS.gene58030:CDS 35.0%
TTATAGACTCCACAAGTCTA+GGG - chr8.3:11162848-11162867 None:intergenic 35.0%
TTCGAAGAGCGATAAAAAGA+CGG + chr8.3:11160830-11160849 MS.gene58030:CDS 35.0%
TTTATAGACTCCACAAGTCT+AGG - chr8.3:11162849-11162868 None:intergenic 35.0%
TTTCTGTAAACACATCCTCT+GGG - chr8.3:11160892-11160911 None:intergenic 35.0%
! TCTTTTTATCGCTCTTCGAA+TGG - chr8.3:11160830-11160849 None:intergenic 35.0%
!! ATTCAACATTTGGTGTATGG+TGG - chr8.3:11162377-11162396 None:intergenic 35.0%
!! TTTTGGTAGTCCCTATACAT+GGG + chr8.3:11161896-11161915 MS.gene58030:intron 35.0%
!! TTTTTGGTAGTCCCTATACA+TGG + chr8.3:11161895-11161914 MS.gene58030:intron 35.0%
AATATCAGGCTACCACTTTG+AGG + chr8.3:11163131-11163150 MS.gene58030:CDS 40.0%
ACATACTGGAATAGGAGCAA+AGG + chr8.3:11162307-11162326 MS.gene58030:CDS 40.0%
ACATCAAATGGTTTAGCTGG+TGG - chr8.3:11163071-11163090 None:intergenic 40.0%
ATAAAGACATGAGCCTCATC+TGG - chr8.3:11162169-11162188 None:intergenic 40.0%
ATACTTGCTTTCTTTGCTGG+AGG + chr8.3:11162666-11162685 MS.gene58030:CDS 40.0%
ATATCAGGCTACCACTTTGA+GGG + chr8.3:11163132-11163151 MS.gene58030:CDS 40.0%
CACACAACAACTGTTAGATC+TGG + chr8.3:11161004-11161023 MS.gene58030:intron 40.0%
CTTGTGGAGTCTATAAACAC+TGG + chr8.3:11162852-11162871 MS.gene58030:CDS 40.0%
GAACTCTCTCTTGAGATATC+TGG - chr8.3:11162489-11162508 None:intergenic 40.0%
GATATCTCAAGAGAGAGTTC+AGG + chr8.3:11162489-11162508 MS.gene58030:CDS 40.0%
GATGCCGTAAATTGAACTCA+TGG - chr8.3:11162089-11162108 None:intergenic 40.0%
GGACCCATGAGTTCAATTTA+CGG + chr8.3:11162082-11162101 MS.gene58030:CDS 40.0%
TAACCTCGTAGGTTCATTTC+AGG - chr8.3:11162600-11162619 None:intergenic 40.0%
TAAGCGTGAAGAGTGAAGAA+TGG - chr8.3:11161865-11161884 None:intergenic 40.0%
TAAGGTTATGCACACTTGAG+AGG - chr8.3:11161250-11161269 None:intergenic 40.0%
TACTTGCTTTCTTTGCTGGA+GGG + chr8.3:11162667-11162686 MS.gene58030:CDS 40.0%
TAGAACGATTATTGGGGTCT+TGG - chr8.3:11162647-11162666 None:intergenic 40.0%
TTCACTCTTCACGCTTATGA+AGG + chr8.3:11161868-11161887 MS.gene58030:intron 40.0%
TTCTGTAAACACATCCTCTG+GGG - chr8.3:11160891-11160910 None:intergenic 40.0%
! AAGATTTCAAGTGCAATGCC+GGG - chr8.3:11161787-11161806 None:intergenic 40.0%
! AAGTTTTGCTTGTGTCCTAG+TGG + chr8.3:11162807-11162826 MS.gene58030:CDS 40.0%
! AGTTCAATTTACGGCATCGA+GGG + chr8.3:11162091-11162110 MS.gene58030:CDS 40.0%
! ATAGAAGATTTTGTCCCCAG+AGG + chr8.3:11160874-11160893 MS.gene58030:CDS 40.0%
! ATCAAACCCTTCAGAAGTGT+TGG - chr8.3:11162556-11162575 None:intergenic 40.0%
! GAAGATTTCAAGTGCAATGC+CGG - chr8.3:11161788-11161807 None:intergenic 40.0%
! TTTTATCGCTCTTCGAATGG+CGG - chr8.3:11160827-11160846 None:intergenic 40.0%
!! GGCATTGAGACATCTCTTTT+AGG - chr8.3:11162579-11162598 None:intergenic 40.0%
ACTTGCTTTCTTTGCTGGAG+GGG + chr8.3:11162668-11162687 MS.gene58030:CDS 45.0%
AGCTCAACTTGTAACCTCGT+AGG - chr8.3:11162611-11162630 None:intergenic 45.0%
AGGTGGTGAGAGGATTGTAT+AGG - chr8.3:11162225-11162244 None:intergenic 45.0%
ATGAGCCTCATCTGGATTGT+GGG - chr8.3:11162161-11162180 None:intergenic 45.0%
ATGCCTGAAATGAACCTACG+AGG + chr8.3:11162594-11162613 MS.gene58030:CDS 45.0%
CTAGCTACTTCATAGCCACT+AGG - chr8.3:11162825-11162844 None:intergenic 45.0%
GAACCACCATTAGTCCATGA+TGG + chr8.3:11162061-11162080 MS.gene58030:CDS 45.0%
GAGTTCAATTTACGGCATCG+AGG + chr8.3:11162090-11162109 MS.gene58030:CDS 45.0%
GCAATGCCAACACTTCTGAA+GGG + chr8.3:11162547-11162566 MS.gene58030:CDS 45.0%
TCTGGATTGTGGGTCGAAAA+TGG - chr8.3:11162151-11162170 None:intergenic 45.0%
TGCAATGCCAACACTTCTGA+AGG + chr8.3:11162546-11162565 MS.gene58030:CDS 45.0%
TTGAACTCATGGGTCCATCA+TGG - chr8.3:11162078-11162097 None:intergenic 45.0%
! ATGGGTCCATCATGGACTAA+TGG - chr8.3:11162070-11162089 None:intergenic 45.0%
! CGCTTATGAAGGTCCCTTTT+TGG + chr8.3:11161879-11161898 MS.gene58030:intron 45.0%
!! ACGAGAAGGCATCACTCAAA+AGG - chr8.3:11161746-11161765 None:intergenic 45.0%
!! CATGAGTTGATCCCTAGAGT+AGG - chr8.3:11162245-11162264 None:intergenic 45.0%
!!! TTATTTATTTATATTTTTCA+TGG + chr8.3:11161951-11161970 MS.gene58030:intron 5.0%
AGTAGCTAGCCCTAGACTTG+TGG + chr8.3:11162836-11162855 MS.gene58030:CDS 50.0%
ATAATCCACCGTGCACGAGA+AGG - chr8.3:11161760-11161779 None:intergenic 50.0%
ATCCTCTCACCACCTACTCT+AGG + chr8.3:11162230-11162249 MS.gene58030:CDS 50.0%
CATGAGCCTCATCTGGATTG+TGG - chr8.3:11162162-11162181 None:intergenic 50.0%
CGATTATTGGGGTCTTGGCT+TGG - chr8.3:11162642-11162661 None:intergenic 50.0%
TCCTCTCACCACCTACTCTA+GGG + chr8.3:11162231-11162250 MS.gene58030:CDS 50.0%
TTCGACCCACAATCCAGATG+AGG + chr8.3:11162153-11162172 MS.gene58030:CDS 50.0%
TTCTTTGCTGGAGGGGAACA+TGG + chr8.3:11162675-11162694 MS.gene58030:CDS 50.0%
! GAGTTGATCCCTAGAGTAGG+TGG - chr8.3:11162242-11162261 None:intergenic 50.0%
! GGTCCATCATGGACTAATGG+TGG - chr8.3:11162067-11162086 None:intergenic 50.0%
!! GCACGGTGGATTATTAGTCC+CGG + chr8.3:11161766-11161785 MS.gene58030:intron 50.0%
!! TTGGGGTCTTGGCTTGGAAT+TGG - chr8.3:11162636-11162655 None:intergenic 50.0%
GAGTGATGCCTTCTCGTGCA+CGG + chr8.3:11161749-11161768 MS.gene58030:intron 55.0%
TCCCTAGAGTAGGTGGTGAG+AGG - chr8.3:11162235-11162254 None:intergenic 55.0%
AAGGTCGGACGTCGTGACAC+AGG - chr8.3:11161037-11161056 None:intergenic 60.0%
TGATGCCTTCTCGTGCACGG+TGG + chr8.3:11161752-11161771 MS.gene58030:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 11160775 11163151 11160775 ID=MS.gene58030
chr8.3 mRNA 11160775 11163151 11160775 ID=MS.gene58030.t1;Parent=MS.gene58030
chr8.3 exon 11160775 11160929 11160775 ID=MS.gene58030.t1.exon1;Parent=MS.gene58030.t1
chr8.3 CDS 11160775 11160929 11160775 ID=cds.MS.gene58030.t1;Parent=MS.gene58030.t1
chr8.3 exon 11162009 11162363 11162009 ID=MS.gene58030.t1.exon2;Parent=MS.gene58030.t1
chr8.3 CDS 11162009 11162363 11162009 ID=cds.MS.gene58030.t1;Parent=MS.gene58030.t1
chr8.3 exon 11162483 11163151 11162483 ID=MS.gene58030.t1.exon3;Parent=MS.gene58030.t1
chr8.3 CDS 11162483 11163151 11162483 ID=cds.MS.gene58030.t1;Parent=MS.gene58030.t1
Gene Sequence

>MS.gene58030

GGGAAGAACAGTTTAGTGAGAATTGAACAAGAGTTGGGTGAAGCAAGAGCCGCCATTCGAAGAGCGATAAAAAGACGGAACTTCACAATCACATCAGAGATAGAAGATTTTGTCCCCAGAGGATGTGTTTACAGAAATGCTTTTGCCTTTCATCAGTTAAGTAACATATACATACATACATACACTTTTTTTTTTGTCTTAGAGTGTAATCCACTGAAATTTAAACTCACACACAACAACTGTTAGATCTGGGTTCGAACCTGTGTCACGACGTCCGACCTTGCAATTAACTTGATCAAATTATTAATTTCATATATATGTTTTTATTGTTTCATCAAAAAAAGATATACGTTTTTTTTTTTTTTAAGGAATATATACTTTGTTATTGTTGACCTATTTCTTATTTCAAAAAATTTCATGTGTGCGTGTCTGATACTCTTTTTTTTTGTTGTTGATGAAACGTGTTTCTCATCCTCTCAAGTGTGCATAACCTTACTAAGTTGATGTAAATTTAATTTATAGTGGCTACATATATTGGTGAAATTAAAATAGGTGTTGGAATAGTTAAAAGGGCTACACCAATTATAAGAGTTTGAAATTACTTTTTTTCTCAAACAAAATTGTATTTGTATGTATTACTAGCTAGTACTACAATCATTATTTTCTTCAACATATATGGATATTTGTGTCGTGGATATATTTTAGATCAAATAGCAAAATGTCATTGATGTGTGATTTAATTTGAAGTGTATATAAAAACGTTCACATTATAAGGTTTCTTATTGTAATGTGATGAACGTTTTTTATACTATTGTAACGTTATTTTGTTACGTTTCAATTATCTTTTTCTTTATTGACCAAGAGTCAAATAAACATTTTTTATCACAGTTTTTATGCAAATATTAACCATCTTTTTTCATTAAATGCAATTGATTAAAAATATTTTTTTATTCAAAATATCTTTTCTTCCTTTTGAGTGATGCCTTCTCGTGCACGGTGGATTATTAGTCCCGGCATTGCACTTGAAATCTTCATCATAAATATTTTGTCCCAAAAAATTCGCTATGATGAACATTAAAAAAAGTCACCATTCTTCACTCTTCACGCTTATGAAGGTCCCTTTTTGGTAGTCCCTATACATGGGACCATATATCATAAGTCATTACCATGTACCACTTATTTATTTATATTTTTCATGGATGTAACTTTCATAGCATGTTCTAAAATTCTTCAGAAGTCACAAAGAGATGTTGAAGAGATTCAAAGTGTGGACTTACAAAGAAGGTGAACCACCATTAGTCCATGATGGACCCATGAGTTCAATTTACGGCATCGAGGGACATTTCATGACTGAAATTGAGAATAGATTGAGTCCATTTTCGACCCACAATCCAGATGAGGCTCATGTCTTTATGCTACCCTTAAGTGTTACAAACATCGTGCACTACCTATACAATCCTCTCACCACCTACTCTAGGGATCAACTCATGAATGTCACCATTGATTATACCAACATCATAGCTCACAAATATACATACTGGAATAGGAGCAAAGGAGCAGATCATTTGCTAGTATCTTGTCATGATTGGGTAACAATTGCCACCATACACCAAATGTTGAATATTTACTCACTTTAAAGACTAATGTGCTACTACTATATTGCTAGATCCTTACTTTTTAATGATGCATAGTAATTAATTTGTTGCAGGCACCAGATATCTCAAGAGAGAGTTCAGGCAAAGAGCTTTTCAAGAACTTAATAAGAGTGTTATGCAATGCCAACACTTCTGAAGGGTTTGATCCTAAAAGAGATGTCTCAATGCCTGAAATGAACCTACGAGGTTACAAGTTGAGCTCACCAATTCCAAGCCAAGACCCCAATAATCGTTCTATACTTGCTTTCTTTGCTGGAGGGGAACATGGTATGATTAGAAAGACATTACTAGATCATTGGAAAGGAAAAGATAAAGAAGTTCAAGTGTATGAATATCTTCCTAAAAACCTTGACTATTATAACTTCATGGGAAAAAGCAAGTTTTGCTTGTGTCCTAGTGGCTATGAAGTAGCTAGCCCTAGACTTGTGGAGTCTATAAACACTGGATGTGTCCCTGTGATTATTTCGGATAACTATCAATTGCCCTTTAGTGATGTTCTTGATTGGAGTAAATTTTCATTGCATATTCCATCAAAGAGGATAAGTGAAATCAAGACAATATTAAGAAGTGTTCCACATGCCAAATACTTGAAATTGCATAGGAGGGTGTTGAAAGTTCAAAGACATTTTGTGTTGAATCCACCAGCTAAACCATTTGATGTGTTCCATATGATTCTTCATTCAATATGGCTTAGAAGACTTAATATCAGGCTACCACTTTGA
Protein sequence

>MS.gene58030.t1

GKNSLVRIEQELGEARAAIRRAIKRRNFTITSEIEDFVPRGCVYRNAFAFHQSHKEMLKRFKVWTYKEGEPPLVHDGPMSSIYGIEGHFMTEIENRLSPFSTHNPDEAHVFMLPLSVTNIVHYLYNPLTTYSRDQLMNVTIDYTNIIAHKYTYWNRSKGADHLLVSCHDWAPDISRESSGKELFKNLIRVLCNANTSEGFDPKRDVSMPEMNLRGYKLSSPIPSQDPNNRSILAFFAGGEHGMIRKTLLDHWKGKDKEVQVYEYLPKNLDYYNFMGKSKFCLCPSGYEVASPRLVESINTGCVPVIISDNYQLPFSDVLDWSKFSLHIPSKRISEIKTILRSVPHAKYLKLHRRVLKVQRHFVLNPPAKPFDVFHMILHSIWLRRLNIRLPL