Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58122.t1 | RHN43062.1 | 76.6 | 299 | 30 | 5 | 1 | 299 | 1 | 259 | 2.00E-32 | 149.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58122.t1 | A0A396GPN1 | 76.6 | 299 | 30 | 5 | 1 | 299 | 1 | 259 | 1.5e-32 | 149.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene58122 | 0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene58122 | 0.808585 | 2.88E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene58122 | 0.806217 | 9.16E-50 | -1.69E-46 |
| MS.gene050238 | MS.gene58122 | 0.80183 | 7.48E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene58122 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene58122 | 0.830805 | 2.39E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene58122 | 0.809544 | 1.80E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene58122 | 0.800084 | 1.70E-48 | -1.69E-46 |
| MS.gene054178 | MS.gene58122 | 0.827262 | 1.72E-54 | -1.69E-46 |
| MS.gene055221 | MS.gene58122 | 0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene58122 | 0.817021 | 4.09E-52 | -1.69E-46 |
| MS.gene058492 | MS.gene58122 | 0.819304 | 1.25E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene58122 | 0.819829 | 9.46E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene58122 | 0.825651 | 4.17E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58122.t1 | MTR_8g092670 | 71.951 | 164 | 16 | 6 | 136 | 299 | 17 | 150 | 6.50e-55 | 176 |
| MS.gene58122.t1 | MTR_8g092675 | 97.436 | 78 | 2 | 0 | 1 | 78 | 1 | 78 | 7.25e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGTGCAATATCATTT+TGG | 0.207097 | 4.2:-9616277 | None:intergenic |
| ACCTGTTCTGGTTCAGGTTC+AGG | 0.218393 | 4.2:-9612208 | None:intergenic |
| GTGTCTTCTTTAACCTGTTC+TGG | 0.244428 | 4.2:-9612220 | None:intergenic |
| TCTTTAACCTGTTCTGGTTC+AGG | 0.251241 | 4.2:-9612214 | None:intergenic |
| ACAAGAATCTACAGTTATTA+AGG | 0.256810 | 4.2:+9616100 | MS.gene58122:CDS |
| TCTGGTTCAGGTTCAGGTTC+AGG | 0.293929 | 4.2:-9612202 | None:intergenic |
| GTAGATTCTTGTTCTGTAGA+TGG | 0.312343 | 4.2:-9616089 | None:intergenic |
| GTCTTCACCACAGTTACTTC+AGG | 0.341416 | 4.2:-9616293 | None:intergenic |
| GGAGATTCATGTTTCAAAGT+TGG | 0.408662 | 4.2:-9616023 | None:intergenic |
| TTCACAACAGTTTCTTCAGC+TGG | 0.423038 | 4.2:-9616248 | None:intergenic |
| ACCTGAACCTGAACCAGAAC+AGG | 0.429850 | 4.2:+9612207 | MS.gene58122:CDS |
| TTCTGTCTTCACAATCTCTT+CGG | 0.442450 | 4.2:-9616174 | None:intergenic |
| TTCTCTTCTATGCTAGATGT+TGG | 0.446295 | 4.2:-9616500 | None:intergenic |
| ATTAGAAACAGAGAAACCTT+TGG | 0.449166 | 4.2:+9615980 | MS.gene58122:CDS |
| AAACCAAAGGTTACGAAGGA+TGG | 0.459100 | 4.2:+9612160 | MS.gene58122:CDS |
| ACTGTCAGCATCAGAAGCCT+TGG | 0.483191 | 4.2:-9616555 | None:intergenic |
| ATCTGTAGAGAACAAAATAG+TGG | 0.491264 | 4.2:+9616475 | MS.gene58122:CDS |
| ATCACTTTCTCCGCAGGTGG+AGG | 0.497231 | 4.2:-9616428 | None:intergenic |
| AAGCTTGTTGTTCAACAAAG+AGG | 0.514250 | 4.2:+9612354 | MS.gene58122:CDS |
| AGTTATTAAGGTTGATGTTG+AGG | 0.515319 | 4.2:+9616112 | MS.gene58122:CDS |
| AACCAAAGGTTACGAAGGAT+GGG | 0.516776 | 4.2:+9612161 | MS.gene58122:CDS |
| TCAATCACTTTCTCCGCAGG+TGG | 0.530836 | 4.2:-9616431 | None:intergenic |
| ACTTCAATCACTTTCTCCGC+AGG | 0.536439 | 4.2:-9616434 | None:intergenic |
| TATTCTCATTGAAAATGTTG+TGG | 0.553494 | 4.2:+9616403 | MS.gene58122:CDS |
| AGAAGGTGAGAAAGCTTCAG+AGG | 0.560763 | 4.2:+9616325 | MS.gene58122:CDS |
| AGAAACAGAGAAACCTTTGG+AGG | 0.576894 | 4.2:+9615983 | MS.gene58122:CDS |
| ACCAAAGGTTACGAAGGATG+GGG | 0.594184 | 4.2:+9612162 | MS.gene58122:CDS |
| GAATGAAGATACAATTACAA+AGG | 0.619093 | 4.2:+9615905 | MS.gene58122:intron |
| CACTGTTGAAACCAAAGTGG+AGG | 0.620060 | 4.2:+9612240 | MS.gene58122:CDS |
| TGCGGAGAAAGTGATTGAAG+TGG | 0.637663 | 4.2:+9616436 | MS.gene58122:CDS |
| AACTAAACCAAAGGTTACGA+AGG | 0.648382 | 4.2:+9612156 | MS.gene58122:CDS |
| GGGTTGTGCAACTAAACCAA+AGG | 0.654419 | 4.2:+9612147 | MS.gene58122:CDS |
| TGGGGTAGAGCATATATCCA+AGG | 0.654752 | 4.2:+9616538 | MS.gene58122:CDS |
| TGTTGTGGTTCCTCCACCTG+CGG | 0.669044 | 4.2:+9616418 | MS.gene58122:CDS |
| AGACACTGTTGAAACCAAAG+TGG | 0.670371 | 4.2:+9612237 | MS.gene58122:CDS |
| CAAGAGCAATTGTTGCAGAG+TGG | 0.680159 | 4.2:+9612271 | MS.gene58122:CDS |
| GTGAAGACAGAAACACAAGA+AGG | 0.686055 | 4.2:+9616308 | MS.gene58122:CDS |
| CCAAAGGTTACGAAGGATGG+GGG | 0.695094 | 4.2:+9612163 | MS.gene58122:CDS |
| TATTGCACCTGAAGTAACTG+TGG | 0.731781 | 4.2:+9616286 | MS.gene58122:CDS |
| TGATTGAAAGAACCAATGGG+GGG | 0.787943 | 4.2:+9612127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAAAAATATCAAA+CGG | + | chr4.2:9614800-9614819 | MS.gene58122:intron | 10.0% |
| !!! | TCATTTTATTAAAATAGATA+TGG | + | chr4.2:9615235-9615254 | MS.gene58122:intron | 10.0% |
| !! | AAAAAAAATGTAAACAGATA+TGG | - | chr4.2:9615048-9615067 | None:intergenic | 15.0% |
| !! | AAAAAAATGTAAACAGATAT+GGG | - | chr4.2:9615047-9615066 | None:intergenic | 15.0% |
| !! | AAATAAAAGGAATATTGTTA+GGG | - | chr4.2:9614214-9614233 | None:intergenic | 15.0% |
| !! | TCTAACAAAAATTAAAACAT+TGG | + | chr4.2:9614515-9614534 | MS.gene58122:intron | 15.0% |
| !! | TTTATTAAAATAGATATGGT+TGG | + | chr4.2:9615239-9615258 | MS.gene58122:intron | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr4.2:9614087-9614106 | MS.gene58122:intron | 15.0% |
| !!! | CATTATTTATTTGTTAAGAA+GGG | - | chr4.2:9613931-9613950 | None:intergenic | 15.0% |
| !!! | TCATTATTTATTTGTTAAGA+AGG | - | chr4.2:9613932-9613951 | None:intergenic | 15.0% |
| !! | AACAAAAATTAAAACATTGG+CGG | + | chr4.2:9614518-9614537 | MS.gene58122:intron | 20.0% |
| !! | ATATGAAGTCACAATATTTA+AGG | - | chr4.2:9613348-9613367 | None:intergenic | 20.0% |
| !! | ATCAAGAATTTATCAAGAAA+AGG | + | chr4.2:9614060-9614079 | MS.gene58122:intron | 20.0% |
| !! | CATAAATTAAATGTAATGCA+TGG | + | chr4.2:9614354-9614373 | MS.gene58122:intron | 20.0% |
| !! | GAAATAAAAGGAATATTGTT+AGG | - | chr4.2:9614215-9614234 | None:intergenic | 20.0% |
| !! | GAAATTCTTAAAATTGATCT+TGG | + | chr4.2:9612829-9612848 | MS.gene58122:intron | 20.0% |
| !! | GTATGAAAATGAGTTTATAT+GGG | + | chr4.2:9613096-9613115 | MS.gene58122:intron | 20.0% |
| !! | TTAGTTGTTGAACTATAAAA+TGG | - | chr4.2:9615335-9615354 | None:intergenic | 20.0% |
| !!! | ACTAAATTTTTTTCATTCAG+AGG | + | chr4.2:9615705-9615724 | MS.gene58122:intron | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr4.2:9614090-9614109 | MS.gene58122:intron | 20.0% |
| !!! | GTTCAAATCACTTTTTAAAT+TGG | + | chr4.2:9614772-9614791 | MS.gene58122:intron | 20.0% |
| !!! | GTTGTGAACTTTAATTATTT+TGG | + | chr4.2:9613608-9613627 | MS.gene58122:intron | 20.0% |
| !!! | TTACTTAGAAGTCAATTTTA+AGG | + | chr4.2:9615542-9615561 | MS.gene58122:intron | 20.0% |
| !!! | TTTGTTTTTTTCATTTTGAG+TGG | - | chr4.2:9615934-9615953 | None:intergenic | 20.0% |
| ! | AAAATGTCCTAATGTATGTT+TGG | + | chr4.2:9612658-9612677 | MS.gene58122:intron | 25.0% |
| ! | AAATGAAAAAAACAAAGCTG+AGG | + | chr4.2:9615938-9615957 | MS.gene58122:CDS | 25.0% |
| ! | AACAAGTAATGTGATAAAAG+AGG | - | chr4.2:9615126-9615145 | None:intergenic | 25.0% |
| ! | AACTCGTTTAAATGTATATG+TGG | + | chr4.2:9612615-9612634 | MS.gene58122:intron | 25.0% |
| ! | ACAAAAGAAAAAATTCACCA+AGG | - | chr4.2:9613490-9613509 | None:intergenic | 25.0% |
| ! | ACAAGAATCTACAGTTATTA+AGG | + | chr4.2:9616100-9616119 | MS.gene58122:CDS | 25.0% |
| ! | AGAAAAATCATGTTGATGTT+GGG | + | chr4.2:9616519-9616538 | MS.gene58122:CDS | 25.0% |
| ! | AGAATCTTCGAAAACAAATT+AGG | - | chr4.2:9613643-9613662 | None:intergenic | 25.0% |
| ! | CAAATCAACTTACTAGTTAT+CGG | + | chr4.2:9615465-9615484 | MS.gene58122:intron | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr4.2:9614092-9614111 | None:intergenic | 25.0% |
| ! | GAATGAAGATACAATTACAA+AGG | + | chr4.2:9615905-9615924 | MS.gene58122:intron | 25.0% |
| ! | GGTATGAAAATGAGTTTATA+TGG | + | chr4.2:9613095-9613114 | MS.gene58122:intron | 25.0% |
| ! | GTAAATTTGTGAAGTTAACA+TGG | - | chr4.2:9613449-9613468 | None:intergenic | 25.0% |
| ! | GTTAAAATGAGATTCATACA+TGG | - | chr4.2:9615857-9615876 | None:intergenic | 25.0% |
| ! | GTTTAAATGTATATGTGGAT+TGG | + | chr4.2:9612620-9612639 | MS.gene58122:intron | 25.0% |
| ! | GTTTGAATATGACTATAAGA+GGG | + | chr4.2:9613888-9613907 | MS.gene58122:intron | 25.0% |
| ! | TACCAAATTTGGGAAATAAA+AGG | - | chr4.2:9614227-9614246 | None:intergenic | 25.0% |
| ! | TATAATAACGACAAGAAAAG+TGG | - | chr4.2:9613986-9614005 | None:intergenic | 25.0% |
| ! | TATTCTCATTGAAAATGTTG+TGG | + | chr4.2:9616403-9616422 | MS.gene58122:CDS | 25.0% |
| ! | TGAAAATTTAGTAGACACAA+GGG | + | chr4.2:9614587-9614606 | MS.gene58122:intron | 25.0% |
| ! | TGTAGGATTATGAAACTAAA+TGG | - | chr4.2:9613546-9613565 | None:intergenic | 25.0% |
| ! | TTGAAAATTTAGTAGACACA+AGG | + | chr4.2:9614586-9614605 | MS.gene58122:intron | 25.0% |
| ! | TTGAATCATTGACAAAGAAA+AGG | + | chr4.2:9614294-9614313 | MS.gene58122:intron | 25.0% |
| ! | TTTGAATATGACTATAAGAG+GGG | + | chr4.2:9613889-9613908 | MS.gene58122:intron | 25.0% |
| !! | ATTCTTTTTACTTGCCATTA+AGG | - | chr4.2:9612558-9612577 | None:intergenic | 25.0% |
| !! | CGTGAACTTTTATCAAATAA+TGG | + | chr4.2:9615276-9615295 | MS.gene58122:intron | 25.0% |
| !! | TATTGATATGAAGTATCCAT+CGG | + | chr4.2:9615617-9615636 | MS.gene58122:intron | 25.0% |
| !! | TGGTAAAATAGTTTAAAGCA+GGG | + | chr4.2:9612849-9612868 | MS.gene58122:intron | 25.0% |
| !! | TTGGTAAAATAGTTTAAAGC+AGG | + | chr4.2:9612848-9612867 | MS.gene58122:intron | 25.0% |
| !!! | ACTTTTTCAACTACCAAATT+TGG | - | chr4.2:9614238-9614257 | None:intergenic | 25.0% |
| !!! | CACAAACTTTTTTTTTTCAG+AGG | + | chr4.2:9612517-9612536 | MS.gene58122:intron | 25.0% |
| !!! | CTTTTTCAACTACCAAATTT+GGG | - | chr4.2:9614237-9614256 | None:intergenic | 25.0% |
| !!! | GAACTTTAATTATTTTGGCA+AGG | + | chr4.2:9613613-9613632 | MS.gene58122:intron | 25.0% |
| !!! | GATGATTTTTCTAGTTTGAT+TGG | - | chr4.2:9616377-9616396 | None:intergenic | 25.0% |
| !!! | TCTCTATTTTTTGTGTATGT+TGG | + | chr4.2:9612455-9612474 | MS.gene58122:intron | 25.0% |
| !!! | TTCCTTTTATTTCCCAAATT+TGG | + | chr4.2:9614222-9614241 | MS.gene58122:intron | 25.0% |
| AAAACTGTTGTCCAAAAAAG+GGG | - | chr4.2:9614554-9614573 | None:intergenic | 30.0% | |
| AAAGTCATTACGACTAAACA+TGG | - | chr4.2:9613322-9613341 | None:intergenic | 30.0% | |
| AACGGTAACTAACTATTGTT+CGG | + | chr4.2:9614818-9614837 | MS.gene58122:intron | 30.0% | |
| AATATCAGATTCTGACATCA+AGG | - | chr4.2:9614973-9614992 | None:intergenic | 30.0% | |
| AATGGTGTGTAATTAAGGAA+AGG | + | chr4.2:9614127-9614146 | MS.gene58122:intron | 30.0% | |
| AATTCCTCCAAACATACATT+AGG | - | chr4.2:9612668-9612687 | None:intergenic | 30.0% | |
| AGATAGTAGATTGGAATGTT+TGG | - | chr4.2:9615000-9615019 | None:intergenic | 30.0% | |
| ATACACTCTCACTATTGATA+CGG | + | chr4.2:9613197-9613216 | MS.gene58122:intron | 30.0% | |
| ATACATGGATATAATTCGTG+TGG | - | chr4.2:9615842-9615861 | None:intergenic | 30.0% | |
| ATAGCGGTTAACAAAATCAA+TGG | - | chr4.2:9613749-9613768 | None:intergenic | 30.0% | |
| ATCTGTAGAGAACAAAATAG+TGG | + | chr4.2:9616475-9616494 | MS.gene58122:CDS | 30.0% | |
| ATTAAGACAATTGCTAGAGT+AGG | - | chr4.2:9613425-9613444 | None:intergenic | 30.0% | |
| ATTAGAAACAGAGAAACCTT+TGG | + | chr4.2:9615980-9615999 | MS.gene58122:CDS | 30.0% | |
| ATTATATGATCACCCGATAT+GGG | + | chr4.2:9613013-9613032 | MS.gene58122:intron | 30.0% | |
| ATTATCCATGTCAATTTGGA+TGG | - | chr4.2:9612728-9612747 | None:intergenic | 30.0% | |
| CAAATAATGGTTGAGCTTAT+AGG | + | chr4.2:9615289-9615308 | MS.gene58122:intron | 30.0% | |
| CGTTTGAATATGACTATAAG+AGG | + | chr4.2:9613887-9613906 | MS.gene58122:intron | 30.0% | |
| CTCAATTAAGTTAGACTAGT+TGG | - | chr4.2:9615501-9615520 | None:intergenic | 30.0% | |
| GAAAAAAATTTAGTTGCGAG+AGG | - | chr4.2:9615699-9615718 | None:intergenic | 30.0% | |
| GAAAAATCATGTTGATGTTG+GGG | + | chr4.2:9616520-9616539 | MS.gene58122:CDS | 30.0% | |
| GAAAACTGTTGTCCAAAAAA+GGG | - | chr4.2:9614555-9614574 | None:intergenic | 30.0% | |
| GAAAATTTAGTAGACACAAG+GGG | + | chr4.2:9614588-9614607 | MS.gene58122:intron | 30.0% | |
| GACAATGCATAATACATACA+AGG | - | chr4.2:9614687-9614706 | None:intergenic | 30.0% | |
| GAGAAAAATCATGTTGATGT+TGG | + | chr4.2:9616518-9616537 | MS.gene58122:CDS | 30.0% | |
| GTTACAAACATCATGAATGA+TGG | + | chr4.2:9613817-9613836 | MS.gene58122:intron | 30.0% | |
| TACATGGATATAATTCGTGT+GGG | - | chr4.2:9615841-9615860 | None:intergenic | 30.0% | |
| TAGCGGTTAACAAAATCAAT+GGG | - | chr4.2:9613748-9613767 | None:intergenic | 30.0% | |
| TATTATATGATCACCCGATA+TGG | + | chr4.2:9613012-9613031 | MS.gene58122:intron | 30.0% | |
| TGAAAACTGTTGTCCAAAAA+AGG | - | chr4.2:9614556-9614575 | None:intergenic | 30.0% | |
| TGATGTCAGAATCTGATATT+GGG | + | chr4.2:9614973-9614992 | MS.gene58122:intron | 30.0% | |
| TGATTACTGTCAATTGTCTT+AGG | + | chr4.2:9614890-9614909 | MS.gene58122:intron | 30.0% | |
| TGTAGTAGAATGTCAATTCT+TGG | + | chr4.2:9612960-9612979 | MS.gene58122:intron | 30.0% | |
| TTAAGACAATTGCTAGAGTA+GGG | - | chr4.2:9613424-9613443 | None:intergenic | 30.0% | |
| TTATCCATGTCAATTTGGAT+GGG | - | chr4.2:9612727-9612746 | None:intergenic | 30.0% | |
| TTCGATTATCCATGTCAATT+TGG | - | chr4.2:9612732-9612751 | None:intergenic | 30.0% | |
| TTGATGTCAGAATCTGATAT+TGG | + | chr4.2:9614972-9614991 | MS.gene58122:intron | 30.0% | |
| ! | ACAAGAAAAGTGGTTTTCTT+GGG | - | chr4.2:9613976-9613995 | None:intergenic | 30.0% |
| ! | CAAATTTTTATGCTGCATAG+AGG | + | chr4.2:9612481-9612500 | MS.gene58122:intron | 30.0% |
| ! | CACATTCCAAATTCTAAGAA+GGG | + | chr4.2:9612884-9612903 | MS.gene58122:intron | 30.0% |
| ! | GCGTTGAAATGTAACTTTTA+TGG | - | chr4.2:9613242-9613261 | None:intergenic | 30.0% |
| ! | GGTAAAATAGTTTAAAGCAG+GGG | + | chr4.2:9612850-9612869 | MS.gene58122:intron | 30.0% |
| ! | TAATCGAACATGAGATTTTG+AGG | + | chr4.2:9612744-9612763 | MS.gene58122:intron | 30.0% |
| !! | ACTAGTAAGTTGATTGATCA+TGG | - | chr4.2:9615422-9615441 | None:intergenic | 30.0% |
| !! | AGTTATTAAGGTTGATGTTG+AGG | + | chr4.2:9616112-9616131 | MS.gene58122:CDS | 30.0% |
| !! | AGTTGCATGATTTGTTGATT+TGG | + | chr4.2:9614430-9614449 | MS.gene58122:intron | 30.0% |
| !! | ATCCTCTCTTTTTGTTTGTA+AGG | + | chr4.2:9615178-9615197 | MS.gene58122:intron | 30.0% |
| !! | TTTTATGGATTAATGCCGAT+TGG | - | chr4.2:9613227-9613246 | None:intergenic | 30.0% |
| !!! | AATTGCTCTTTTTTTTGTGG+TGG | + | chr4.2:9614642-9614661 | MS.gene58122:intron | 30.0% |
| !!! | CACTTTACAAACTAGTTTTG+TGG | + | chr4.2:9613131-9613150 | MS.gene58122:intron | 30.0% |
| !!! | GACAATTGCTCTTTTTTTTG+TGG | + | chr4.2:9614639-9614658 | MS.gene58122:intron | 30.0% |
| !!! | TTGTTTTTAGTTTCCTGAGT+TGG | - | chr4.2:9616065-9616084 | None:intergenic | 30.0% |
| AACTAAACCAAAGGTTACGA+AGG | + | chr4.2:9612156-9612175 | MS.gene58122:CDS | 35.0% | |
| ACATGAATCTCCAAAAACAG+AGG | + | chr4.2:9616034-9616053 | MS.gene58122:CDS | 35.0% | |
| ACCTAAGACAGTTGATCTAT+AGG | - | chr4.2:9614871-9614890 | None:intergenic | 35.0% | |
| ACGATCAAGCTAACTCAAAT+GGG | + | chr4.2:9612796-9612815 | MS.gene58122:intron | 35.0% | |
| ACTAAATGCATGGCAAACAA+AGG | + | chr4.2:9613682-9613701 | MS.gene58122:intron | 35.0% | |
| ACTACTGGTAGTAAGGAATA+TGG | + | chr4.2:9614915-9614934 | MS.gene58122:intron | 35.0% | |
| AGATGGTAGGATAAATATGC+TGG | - | chr4.2:9614947-9614966 | None:intergenic | 35.0% | |
| AGCATATTTATCCTACCATC+TGG | + | chr4.2:9614946-9614965 | MS.gene58122:intron | 35.0% | |
| AGCGGTTAACAAAATCAATG+GGG | - | chr4.2:9613747-9613766 | None:intergenic | 35.0% | |
| ATCTATTTGATCACCCACTA+TGG | + | chr4.2:9612923-9612942 | MS.gene58122:intron | 35.0% | |
| ATGTCCTAATGTATGTTTGG+AGG | + | chr4.2:9612661-9612680 | MS.gene58122:intron | 35.0% | |
| ATTCATGATGTTTGTAACCG+TGG | - | chr4.2:9613815-9613834 | None:intergenic | 35.0% | |
| CAATTGTCTTAGGTAACTAC+TGG | + | chr4.2:9614900-9614919 | MS.gene58122:intron | 35.0% | |
| CATAATACATACAAGGTACG+AGG | - | chr4.2:9614680-9614699 | None:intergenic | 35.0% | |
| CATTAAGGTTTGTATCAAGG+GGG | - | chr4.2:9612543-9612562 | None:intergenic | 35.0% | |
| CCATTAAGGTTTGTATCAAG+GGG | - | chr4.2:9612544-9612563 | None:intergenic | 35.0% | |
| CTACTGGTAGTAAGGAATAT+GGG | + | chr4.2:9614916-9614935 | MS.gene58122:intron | 35.0% | |
| GACCTTACAAACAAAAAGAG+AGG | - | chr4.2:9615183-9615202 | None:intergenic | 35.0% | |
| GCATATTTATCCTACCATCT+GGG | + | chr4.2:9614947-9614966 | MS.gene58122:intron | 35.0% | |
| GCCATTAAGGTTTGTATCAA+GGG | - | chr4.2:9612545-9612564 | None:intergenic | 35.0% | |
| GGAGATTCATGTTTCAAAGT+TGG | - | chr4.2:9616026-9616045 | None:intergenic | 35.0% | |
| GTAGATTCTTGTTCTGTAGA+TGG | - | chr4.2:9616092-9616111 | None:intergenic | 35.0% | |
| TACATCATGCACTAAATGCA+TGG | + | chr4.2:9613672-9613691 | MS.gene58122:intron | 35.0% | |
| TACCCAACAAAAGTTTACCT+TGG | + | chr4.2:9613470-9613489 | MS.gene58122:intron | 35.0% | |
| TATTGATACGGTAGTCCAAT+CGG | + | chr4.2:9613209-9613228 | MS.gene58122:intron | 35.0% | |
| TCTATTTGATCACCCACTAT+GGG | + | chr4.2:9612924-9612943 | MS.gene58122:intron | 35.0% | |
| TCTCATCCCTTCTTAGAATT+TGG | - | chr4.2:9612893-9612912 | None:intergenic | 35.0% | |
| TGCCATTAAGGTTTGTATCA+AGG | - | chr4.2:9612546-9612565 | None:intergenic | 35.0% | |
| TTAACAAAATCAATGGGGGT+GGG | - | chr4.2:9613742-9613761 | None:intergenic | 35.0% | |
| TTAATTATTGACGAAGCCGA+TGG | - | chr4.2:9615636-9615655 | None:intergenic | 35.0% | |
| TTAGGTAACTACTGGTAGTA+AGG | + | chr4.2:9614908-9614927 | MS.gene58122:intron | 35.0% | |
| TTCATGATGTTTGTAACCGT+GGG | - | chr4.2:9613814-9613833 | None:intergenic | 35.0% | |
| TTCGTCGAAACAAACTAATG+AGG | + | chr4.2:9613287-9613306 | MS.gene58122:intron | 35.0% | |
| TTCTCTTCTATGCTAGATGT+TGG | - | chr4.2:9616503-9616522 | None:intergenic | 35.0% | |
| TTCTGTCTTCACAATCTCTT+CGG | - | chr4.2:9616177-9616196 | None:intergenic | 35.0% | |
| TTTAGTAGATGCCAATGCTT+AGG | + | chr4.2:9613046-9613065 | MS.gene58122:intron | 35.0% | |
| ! | AAGAAAAGTGGTTTTCTTGG+GGG | - | chr4.2:9613974-9613993 | None:intergenic | 35.0% |
| ! | ATATGGGTTATTGTCCTCTA+GGG | - | chr4.2:9615031-9615050 | None:intergenic | 35.0% |
| ! | ATTTTTATGCTGCATAGAGG+AGG | + | chr4.2:9612484-9612503 | MS.gene58122:intron | 35.0% |
| ! | CAAGAAAAGTGGTTTTCTTG+GGG | - | chr4.2:9613975-9613994 | None:intergenic | 35.0% |
| ! | CACCAAGGTAAACTTTTGTT+GGG | - | chr4.2:9613475-9613494 | None:intergenic | 35.0% |
| ! | CTTCAGGTGCAATATCATTT+TGG | - | chr4.2:9616280-9616299 | None:intergenic | 35.0% |
| ! | GAAGTTTTCTTAGCTTCTTC+TGG | - | chr4.2:9616203-9616222 | None:intergenic | 35.0% |
| ! | GACAAGAAAAGTGGTTTTCT+TGG | - | chr4.2:9613977-9613996 | None:intergenic | 35.0% |
| ! | GACTTTTTGTACCCCTTTTT+TGG | + | chr4.2:9614540-9614559 | MS.gene58122:intron | 35.0% |
| ! | GAGGTAATGGTGTGTAATTA+AGG | + | chr4.2:9614122-9614141 | MS.gene58122:intron | 35.0% |
| ! | GCACATTCCAAATTCTAAGA+AGG | + | chr4.2:9612883-9612902 | MS.gene58122:intron | 35.0% |
| ! | TCACCAAGGTAAACTTTTGT+TGG | - | chr4.2:9613476-9613495 | None:intergenic | 35.0% |
| ! | TGCTCTTAGCATCTTTTCTT+AGG | - | chr4.2:9614407-9614426 | None:intergenic | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | chr4.2:9614100-9614119 | MS.gene58122:intron | 35.0% |
| !! | AAGCTTGTTGTTCAACAAAG+AGG | + | chr4.2:9612354-9612373 | MS.gene58122:CDS | 35.0% |
| !! | GGGCGAGTTGATAAAATATA+AGG | + | chr4.2:9613074-9613093 | MS.gene58122:intron | 35.0% |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | chr4.2:9614099-9614118 | MS.gene58122:intron | 35.0% |
| !!! | ATGTTTTTAGCATCCTCCAA+AGG | - | chr4.2:9615999-9616018 | None:intergenic | 35.0% |
| !!! | GAGGTTCAAACTCTTGTTTT+AGG | + | chr4.2:9615724-9615743 | MS.gene58122:intron | 35.0% |
| !!! | GAGTAGGGAAGTGTTTTATA+TGG | - | chr4.2:9613409-9613428 | None:intergenic | 35.0% |
| !!! | GTTGGTTTTTCCTCTGTTTT+TGG | - | chr4.2:9616047-9616066 | None:intergenic | 35.0% |
| AAACATGAGTGATGAGTGGT+AGG | + | chr4.2:9614321-9614340 | MS.gene58122:intron | 40.0% | |
| AAACATGAGTGGTCCCATAT+CGG | - | chr4.2:9613029-9613048 | None:intergenic | 40.0% | |
| AAACCAAAGGTTACGAAGGA+TGG | + | chr4.2:9612160-9612179 | MS.gene58122:CDS | 40.0% | |
| AACAGAGGAAAAACCAACTC+AGG | + | chr4.2:9616049-9616068 | MS.gene58122:CDS | 40.0% | |
| AACCAAAGGTTACGAAGGAT+GGG | + | chr4.2:9612161-9612180 | MS.gene58122:CDS | 40.0% | |
| AACTTAAGTGACCCCATAGT+GGG | - | chr4.2:9612939-9612958 | None:intergenic | 40.0% | |
| ACTTGTCTGACCACCTTTAA+TGG | + | chr4.2:9615669-9615688 | MS.gene58122:intron | 40.0% | |
| AGAAACAGAGAAACCTTTGG+AGG | + | chr4.2:9615983-9616002 | MS.gene58122:CDS | 40.0% | |
| AGACACTGTTGAAACCAAAG+TGG | + | chr4.2:9612237-9612256 | MS.gene58122:CDS | 40.0% | |
| AGCTAAACATGAGTGATGAG+TGG | + | chr4.2:9614317-9614336 | MS.gene58122:intron | 40.0% | |
| CACGATCAAGCTAACTCAAA+TGG | + | chr4.2:9612795-9612814 | MS.gene58122:intron | 40.0% | |
| CCCCTTGATACAAACCTTAA+TGG | + | chr4.2:9612541-9612560 | MS.gene58122:intron | 40.0% | |
| CTAACCCATCCAAATTGACA+TGG | + | chr4.2:9612720-9612739 | MS.gene58122:intron | 40.0% | |
| CTATTTGATCACCCACTATG+GGG | + | chr4.2:9612925-9612944 | MS.gene58122:intron | 40.0% | |
| CTTGTCTGACCACCTTTAAT+GGG | + | chr4.2:9615670-9615689 | MS.gene58122:intron | 40.0% | |
| GAATATGACTATAAGAGGGG+TGG | + | chr4.2:9613892-9613911 | MS.gene58122:intron | 40.0% | |
| GAGCATGAGAACAATGATAG+CGG | - | chr4.2:9613765-9613784 | None:intergenic | 40.0% | |
| GATGGCAAAGTGCAAACAAA+AGG | + | chr4.2:9613835-9613854 | MS.gene58122:intron | 40.0% | |
| GATTTGGAGAGATAGTGAGA+GGG | + | chr4.2:9614446-9614465 | MS.gene58122:intron | 40.0% | |
| GCCTATAGATCAACTGTCTT+AGG | + | chr4.2:9614867-9614886 | MS.gene58122:intron | 40.0% | |
| GCGAAAATCACTGCTTGATT+AGG | + | chr4.2:9614612-9614631 | MS.gene58122:intron | 40.0% | |
| GCGGTTAACAAAATCAATGG+GGG | - | chr4.2:9613746-9613765 | None:intergenic | 40.0% | |
| GTAACTAACTATTGTTCGGC+AGG | + | chr4.2:9614822-9614841 | MS.gene58122:intron | 40.0% | |
| GTGAAGACAGAAACACAAGA+AGG | + | chr4.2:9616308-9616327 | MS.gene58122:CDS | 40.0% | |
| GTGTCTTCTTTAACCTGTTC+TGG | - | chr4.2:9612223-9612242 | None:intergenic | 40.0% | |
| GTTAACAAAATCAATGGGGG+TGG | - | chr4.2:9613743-9613762 | None:intergenic | 40.0% | |
| TAACTTAAGTGACCCCATAG+TGG | - | chr4.2:9612940-9612959 | None:intergenic | 40.0% | |
| TATTGCACCTGAAGTAACTG+TGG | + | chr4.2:9616286-9616305 | MS.gene58122:CDS | 40.0% | |
| TGGCATCTACTAAACATGAG+TGG | - | chr4.2:9613040-9613059 | None:intergenic | 40.0% | |
| TTCAACTTACGCGCACAATT+TGG | - | chr4.2:9613160-9613179 | None:intergenic | 40.0% | |
| TTCACAACAGTTTCTTCAGC+TGG | - | chr4.2:9616251-9616270 | None:intergenic | 40.0% | |
| ! | GATATGGGTTATTGTCCTCT+AGG | - | chr4.2:9615032-9615051 | None:intergenic | 40.0% |
| ! | GCTTTGTTACTACTGCTTGT+AGG | - | chr4.2:9613563-9613582 | None:intergenic | 40.0% |
| ! | TATGGGTTATTGTCCTCTAG+GGG | - | chr4.2:9615030-9615049 | None:intergenic | 40.0% |
| ! | TGAACTTAGCTCAGTTGGTA+GGG | - | chr4.2:9614709-9614728 | None:intergenic | 40.0% |
| ! | TGATTTGGAGAGATAGTGAG+AGG | + | chr4.2:9614445-9614464 | MS.gene58122:intron | 40.0% |
| ! | TTGAGTTAGCTTGATCGTGT+TGG | - | chr4.2:9612794-9612813 | None:intergenic | 40.0% |
| !! | AAACAAAGGTGCAACCCTTT+TGG | + | chr4.2:9613696-9613715 | MS.gene58122:intron | 40.0% |
| !! | TCGAACATGAGATTTTGAGG+AGG | + | chr4.2:9612747-9612766 | MS.gene58122:intron | 40.0% |
| !! | TCTTTAACCTGTTCTGGTTC+AGG | - | chr4.2:9612217-9612236 | None:intergenic | 40.0% |
| !! | TGAGTTTGAGTTGACTGTGA+TGG | + | chr4.2:9614269-9614288 | MS.gene58122:intron | 40.0% |
| !! | TTGTTTTTCTGCCTCCACTT+TGG | - | chr4.2:9612254-9612273 | None:intergenic | 40.0% |
| AACAAATAGGGGCCTCCAAA+AGG | - | chr4.2:9613714-9613733 | None:intergenic | 45.0% | |
| AACATGAGTGGTCCCATATC+GGG | - | chr4.2:9613028-9613047 | None:intergenic | 45.0% | |
| AATGTCAATTCTTGGCTGCG+AGG | + | chr4.2:9612968-9612987 | MS.gene58122:intron | 45.0% | |
| ACAAATAGGGGCCTCCAAAA+GGG | - | chr4.2:9613713-9613732 | None:intergenic | 45.0% | |
| ACCAAAGGTTACGAAGGATG+GGG | + | chr4.2:9612162-9612181 | MS.gene58122:CDS | 45.0% | |
| ACTTCAATCACTTTCTCCGC+AGG | - | chr4.2:9616437-9616456 | None:intergenic | 45.0% | |
| AGAAGGTGAGAAAGCTTCAG+AGG | + | chr4.2:9616325-9616344 | MS.gene58122:CDS | 45.0% | |
| AGTGATGAGTGGTAGGTAGT+GGG | + | chr4.2:9614328-9614347 | MS.gene58122:intron | 45.0% | |
| ATGCCAATGCTTAGGTGTGA+GGG | + | chr4.2:9613054-9613073 | MS.gene58122:intron | 45.0% | |
| ATGTCAATTCTTGGCTGCGA+GGG | + | chr4.2:9612969-9612988 | MS.gene58122:intron | 45.0% | |
| CAAGAGCAATTGTTGCAGAG+TGG | + | chr4.2:9612271-9612290 | MS.gene58122:CDS | 45.0% | |
| CACTGTTGAAACCAAAGTGG+AGG | + | chr4.2:9612240-9612259 | MS.gene58122:CDS | 45.0% | |
| GAGAGGAAACCCATTAAAGG+TGG | - | chr4.2:9615682-9615701 | None:intergenic | 45.0% | |
| GGGTGGGATCTGAACAAATA+GGG | - | chr4.2:9613726-9613745 | None:intergenic | 45.0% | |
| GGGTTGTGCAACTAAACCAA+AGG | + | chr4.2:9612147-9612166 | MS.gene58122:CDS | 45.0% | |
| GGTAGTAAGGAATATGGGCT+GGG | + | chr4.2:9614921-9614940 | MS.gene58122:intron | 45.0% | |
| GGTGGGATCTGAACAAATAG+GGG | - | chr4.2:9613725-9613744 | None:intergenic | 45.0% | |
| GTCTTCACCACAGTTACTTC+AGG | - | chr4.2:9616296-9616315 | None:intergenic | 45.0% | |
| GTGAACTTAGCTCAGTTGGT+AGG | - | chr4.2:9614710-9614729 | None:intergenic | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | + | chr4.2:9614103-9614122 | MS.gene58122:intron | 45.0% | |
| TGCGAGAGGAAACCCATTAA+AGG | - | chr4.2:9615685-9615704 | None:intergenic | 45.0% | |
| TGCGGAGAAAGTGATTGAAG+TGG | + | chr4.2:9616436-9616455 | MS.gene58122:CDS | 45.0% | |
| TGGGGTAGAGCATATATCCA+AGG | + | chr4.2:9616538-9616557 | MS.gene58122:CDS | 45.0% | |
| TGGTAGTAAGGAATATGGGC+TGG | + | chr4.2:9614920-9614939 | MS.gene58122:intron | 45.0% | |
| !! | ATCGTGTTGGCTTAGGACAT+AGG | - | chr4.2:9612781-9612800 | None:intergenic | 45.0% |
| !! | TAGCTTGATCGTGTTGGCTT+AGG | - | chr4.2:9612788-9612807 | None:intergenic | 45.0% |
| !!! | CTCTTTTTTTTGTGGTGGCC+GGG | + | chr4.2:9614647-9614666 | MS.gene58122:intron | 45.0% |
| !!! | GCTCTTTTTTTTGTGGTGGC+CGG | + | chr4.2:9614646-9614665 | MS.gene58122:intron | 45.0% |
| !!! | TCTTTTTTTTGTGGTGGCCG+GGG | + | chr4.2:9614648-9614667 | MS.gene58122:intron | 45.0% |
| AAGGTACGAGGTTCAAACCC+CGG | - | chr4.2:9614668-9614687 | None:intergenic | 50.0% | |
| ACCTGAACCTGAACCAGAAC+AGG | + | chr4.2:9612207-9612226 | MS.gene58122:CDS | 50.0% | |
| ACTGTCAGCATCAGAAGCCT+TGG | - | chr4.2:9616558-9616577 | None:intergenic | 50.0% | |
| CCAAAGGTTACGAAGGATGG+GGG | + | chr4.2:9612163-9612182 | MS.gene58122:CDS | 50.0% | |
| CCAACTGAGCTAAGTTCACG+AGG | + | chr4.2:9614711-9614730 | MS.gene58122:intron | 50.0% | |
| CCTCGTGAACTTAGCTCAGT+TGG | - | chr4.2:9614714-9614733 | None:intergenic | 50.0% | |
| GAGTGATGAGTGGTAGGTAG+TGG | + | chr4.2:9614327-9614346 | MS.gene58122:intron | 50.0% | |
| GATGCCAATGCTTAGGTGTG+AGG | + | chr4.2:9613053-9613072 | MS.gene58122:intron | 50.0% | |
| GCGGAAATCAAGGGAGGTAA+TGG | + | chr4.2:9614109-9614128 | MS.gene58122:intron | 50.0% | |
| GGGGTGGGATCTGAACAAAT+AGG | - | chr4.2:9613727-9613746 | None:intergenic | 50.0% | |
| GGTGGGTGGAGATAGTAGAT+TGG | - | chr4.2:9615009-9615028 | None:intergenic | 50.0% | |
| TAACTAGTGTGCGTGTCCCA+CGG | + | chr4.2:9613795-9613814 | MS.gene58122:intron | 50.0% | |
| TCAATCACTTTCTCCGCAGG+TGG | - | chr4.2:9616434-9616453 | None:intergenic | 50.0% | |
| TGAGCTAAGTTCACGAGGAC+AGG | + | chr4.2:9614716-9614735 | MS.gene58122:intron | 50.0% | |
| TTCTGACATCAAGGCCCAGA+TGG | - | chr4.2:9614964-9614983 | None:intergenic | 50.0% | |
| ! | GGTTATTGTCCTCTAGGGGT+GGG | - | chr4.2:9615026-9615045 | None:intergenic | 50.0% |
| ! | TCTGGTTCAGGTTCAGGTTC+AGG | - | chr4.2:9612205-9612224 | None:intergenic | 50.0% |
| !! | ACCTGTTCTGGTTCAGGTTC+AGG | - | chr4.2:9612211-9612230 | None:intergenic | 50.0% |
| !! | CAAAGGTGCAACCCTTTTGG+AGG | + | chr4.2:9613699-9613718 | MS.gene58122:intron | 50.0% |
| ATCACTTTCTCCGCAGGTGG+AGG | - | chr4.2:9616431-9616450 | None:intergenic | 55.0% | |
| CCCCCATCCTTCGTAACCTT+TGG | - | chr4.2:9612166-9612185 | None:intergenic | 55.0% | |
| GACATCAAGGCCCAGATGGT+AGG | - | chr4.2:9614960-9614979 | None:intergenic | 55.0% | |
| TCGCCCTCACACCTAAGCAT+TGG | - | chr4.2:9613060-9613079 | None:intergenic | 55.0% | |
| TGCATGGAGCTGCTCACTGA+TGG | + | chr4.2:9614370-9614389 | MS.gene58122:intron | 55.0% | |
| TGTTGTGGTTCCTCCACCTG+CGG | + | chr4.2:9616418-9616437 | MS.gene58122:CDS | 55.0% | |
| ! | GGGTTATTGTCCTCTAGGGG+TGG | - | chr4.2:9615027-9615046 | None:intergenic | 55.0% |
| ! | TATTGTCCTCTAGGGGTGGG+TGG | - | chr4.2:9615023-9615042 | None:intergenic | 55.0% |
| !! | GGATGGGGGTGTTGATGTGA+AGG | + | chr4.2:9612177-9612196 | MS.gene58122:CDS | 55.0% |
| CTATCTCCACCCACCCCTAG+AGG | + | chr4.2:9615014-9615033 | MS.gene58122:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 9612142 | 9616598 | 9612142 | ID=MS.gene58122 |
| chr4.2 | mRNA | 9612142 | 9616598 | 9612142 | ID=MS.gene58122.t1;Parent=MS.gene58122 |
| chr4.2 | exon | 9612142 | 9612375 | 9612142 | ID=MS.gene58122.t1.exon1;Parent=MS.gene58122.t1 |
| chr4.2 | CDS | 9612142 | 9612375 | 9612142 | ID=cds.MS.gene58122.t1;Parent=MS.gene58122.t1 |
| chr4.2 | exon | 9615906 | 9616598 | 9615906 | ID=MS.gene58122.t1.exon2;Parent=MS.gene58122.t1 |
| chr4.2 | CDS | 9615906 | 9616598 | 9615906 | ID=cds.MS.gene58122.t1;Parent=MS.gene58122.t1 |
| Gene Sequence |
| Protein sequence |
