Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58549.t1 | XP_003613486.1 | 85.7 | 189 | 27 | 0 | 1 | 189 | 4 | 192 | 4.00E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58549.t1 | F4I3V6 | 63.3 | 90 | 33 | 0 | 89 | 178 | 97 | 186 | 3.4e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58549.t1 | G7K712 | 85.7 | 189 | 27 | 0 | 1 | 189 | 4 | 192 | 2.9e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene58549 | 0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene58549 | 0.818072 | 2.37E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene58549 | 0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene58549 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene58549 | 0.808261 | 3.38E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene58549 | 0.829961 | 3.84E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene58549 | 0.818802 | 1.62E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene58549 | 0.836045 | 1.18E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene58549 | 0.800285 | 1.55E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene58549 | 0.807835 | 4.16E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene58549 | 0.815118 | 1.09E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene58549 | 0.825413 | 4.75E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene58549 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene056719 | MS.gene58549 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene057927 | MS.gene58549 | 0.800189 | 1.62E-48 | -1.69E-46 |
| MS.gene058082 | MS.gene58549 | 0.837656 | 4.57E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene58549 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene05959 | MS.gene58549 | 0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene58549 | 0.849962 | 2.31E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene58549 | 0.810845 | 9.41E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene58549 | 0.820359 | 7.15E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene58549 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene58549 | 0.802786 | 4.76E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene58549 | -0.807127 | 5.88E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene58549 | 0.809008 | 2.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTATTTGCTGCAATTT+TGG | 0.129989 | 5.3:-60376894 | MS.gene58549:CDS |
| TGTTTAAGAAAATGTCTAAA+AGG | 0.262129 | 5.3:-60379639 | MS.gene58549:CDS |
| AATGTCTAAAAGGGCTAAAA+AGG | 0.323229 | 5.3:-60379629 | MS.gene58549:CDS |
| GTAGTAGAGTTTGGAAGAAA+AGG | 0.351001 | 5.3:+60379961 | None:intergenic |
| ACGATGGTTGTAGTAGAGTT+TGG | 0.361096 | 5.3:+60379952 | None:intergenic |
| TTGCAGGTCATCTGCAACAT+TGG | 0.387086 | 5.3:-60376920 | MS.gene58549:intron |
| TAGTAGAGTTTGGAAGAAAA+GGG | 0.416897 | 5.3:+60379962 | None:intergenic |
| TTCTGAGAAGTGGTGAAGAT+TGG | 0.421457 | 5.3:+60380012 | None:intergenic |
| AATCAAGGGAACAATTCCTT+TGG | 0.435782 | 5.3:-60376815 | MS.gene58549:CDS |
| ACACCTTCATCAATCTCATA+TGG | 0.466013 | 5.3:+60379751 | None:intergenic |
| TTGATTGAAACTATTCCCAT+TGG | 0.473388 | 5.3:+60376832 | None:intergenic |
| TTTGGCCCTGCGTGTGATAT+GGG | 0.475980 | 5.3:-60376876 | MS.gene58549:CDS |
| GTTTCTCACTTCCAGTCCAA+TGG | 0.484407 | 5.3:-60376848 | MS.gene58549:CDS |
| TTTCTCACTTCCAGTCCAAT+GGG | 0.491752 | 5.3:-60376847 | MS.gene58549:CDS |
| AATGGGAATAGTTTCAATCA+AGG | 0.493079 | 5.3:-60376830 | MS.gene58549:CDS |
| GTTTAAGAAAATGTCTAAAA+GGG | 0.503270 | 5.3:-60379638 | MS.gene58549:CDS |
| TGAAACTATTCCCATTGGAC+TGG | 0.507228 | 5.3:+60376837 | None:intergenic |
| AAGGAGAAACTTACGAGTTG+AGG | 0.534806 | 5.3:+60379574 | None:intergenic |
| AGAGTTTGGAAGAAAAGGGT+TGG | 0.542234 | 5.3:+60379966 | None:intergenic |
| AAGTGGTGAAGATTGGAGCA+TGG | 0.552992 | 5.3:+60380019 | None:intergenic |
| CAGGTCATCTGCAACATTGG+AGG | 0.554407 | 5.3:-60376917 | MS.gene58549:CDS |
| ATGGGAATAGTTTCAATCAA+GGG | 0.569470 | 5.3:-60376829 | MS.gene58549:CDS |
| AATCATCAATTGCAATAGCA+AGG | 0.575080 | 5.3:-60379918 | MS.gene58549:intron |
| TGTCTAGGCTATAGCACCAA+AGG | 0.578357 | 5.3:+60376799 | None:intergenic |
| TGTTGTCAAAGCACTTCTTG+AGG | 0.596810 | 5.3:-60377935 | MS.gene58549:intron |
| AGCTGCCCATATCACACGCA+GGG | 0.602607 | 5.3:+60376871 | None:intergenic |
| GAACCATATGAGATTGATGA+AGG | 0.606231 | 5.3:-60379754 | MS.gene58549:CDS |
| TAGCTGAATAACTCAAGTGG+TGG | 0.614691 | 5.3:-60379778 | MS.gene58549:CDS |
| TTGTAGCTGAATAACTCAAG+TGG | 0.616039 | 5.3:-60379781 | MS.gene58549:intron |
| AGTTGAGGAGATATCACTGT+AGG | 0.617126 | 5.3:+60379589 | None:intergenic |
| GTGAAGATTGGAGCATGGAG+AGG | 0.628672 | 5.3:+60380024 | None:intergenic |
| CAGCTGCCCATATCACACGC+AGG | 0.644863 | 5.3:+60376870 | None:intergenic |
| GGGATATGATGGGATTGAAG+AGG | 0.656878 | 5.3:-60379722 | MS.gene58549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAAAAAAGAAAATAG+CGG | + | chr5.3:60379012-60379031 | None:intergenic | 10.0% |
| !!! | AAAAAATTGTTTTTAGAAAA+TGG | - | chr5.3:60377011-60377030 | MS.gene58549:intron | 10.0% |
| !!! | AAAAATTGTTTTTAGAAAAT+GGG | - | chr5.3:60377012-60377031 | MS.gene58549:intron | 10.0% |
| !!! | TTAGATTATTCTTATATTTT+TGG | - | chr5.3:60379775-60379794 | MS.gene58549:CDS | 10.0% |
| !!! | ATGATAGTAATTTAAAATGA+AGG | + | chr5.3:60378207-60378226 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAATTTTAAGATT+GGG | - | chr5.3:60378574-60378593 | MS.gene58549:intron | 15.0% |
| !!! | ATTTTTTATTACAGGTAATA+TGG | + | chr5.3:60377995-60378014 | None:intergenic | 15.0% |
| !!! | TTAAAATTTGAAACATGAAA+AGG | + | chr5.3:60378570-60378589 | None:intergenic | 15.0% |
| !! | AATCTAAACATACATTAACA+TGG | + | chr5.3:60377582-60377601 | None:intergenic | 20.0% |
| !! | GCATTTACTATAGTAAATAT+AGG | - | chr5.3:60377648-60377667 | MS.gene58549:intron | 20.0% |
| !! | GTTTAAGAAAATGTCTAAAA+GGG | - | chr5.3:60377221-60377240 | MS.gene58549:intron | 20.0% |
| !! | TACTATAGTAAATATAGGTT+AGG | - | chr5.3:60377653-60377672 | MS.gene58549:intron | 20.0% |
| !! | TATTTCATTTAAATGCTCTT+GGG | - | chr5.3:60377933-60377952 | MS.gene58549:intron | 20.0% |
| !! | TGTTTAAGAAAATGTCTAAA+AGG | - | chr5.3:60377220-60377239 | MS.gene58549:intron | 20.0% |
| !! | TTAATGTATGTTTAGATTTG+TGG | - | chr5.3:60377584-60377603 | MS.gene58549:intron | 20.0% |
| !! | TTAATTCTCTTTCTAGATAA+TGG | - | chr5.3:60379625-60379644 | MS.gene58549:CDS | 20.0% |
| !! | TTATTTCATTTAAATGCTCT+TGG | - | chr5.3:60377932-60377951 | MS.gene58549:intron | 20.0% |
| !! | TTTAAAAGTGATAAGCAATT+GGG | + | chr5.3:60377517-60377536 | None:intergenic | 20.0% |
| !!! | ACTCTTACACTTTTTATTAT+TGG | + | chr5.3:60378352-60378371 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTGTTCAGTACA+AGG | + | chr5.3:60378406-60378425 | None:intergenic | 20.0% |
| !!! | CATGTTTCAAATTTTAAGAT+TGG | - | chr5.3:60378573-60378592 | MS.gene58549:intron | 20.0% |
| !!! | TGTTTCAAATTTTAAGATTG+GGG | - | chr5.3:60378575-60378594 | MS.gene58549:intron | 20.0% |
| !!! | TTTTCATTTTGCTTCTTATT+TGG | - | chr5.3:60378843-60378862 | MS.gene58549:intron | 20.0% |
| ! | ATATAAGCTAACCAAAAGTA+TGG | - | chr5.3:60379813-60379832 | MS.gene58549:intron | 25.0% |
| ! | CTAGTGTTTAGAAATCAAAA+TGG | + | chr5.3:60378737-60378756 | None:intergenic | 25.0% |
| ! | GAAAATGTTGACAAAGTAAA+CGG | + | chr5.3:60379111-60379130 | None:intergenic | 25.0% |
| ! | GAATTTCTTTGCTTTATAAC+TGG | - | chr5.3:60379865-60379884 | MS.gene58549:intron | 25.0% |
| ! | GTTTAAAAGTGATAAGCAAT+TGG | + | chr5.3:60377518-60377537 | None:intergenic | 25.0% |
| ! | TAAGAAGCAAAATGAAAAAG+CGG | + | chr5.3:60378841-60378860 | None:intergenic | 25.0% |
| ! | TCTAGAAAGAGAATTAAGAA+AGG | + | chr5.3:60379622-60379641 | None:intergenic | 25.0% |
| ! | TGATTATTCATGATCACTAA+TGG | + | chr5.3:60377679-60377698 | None:intergenic | 25.0% |
| ! | TTTCCTACTTATTCAACTTA+AGG | - | chr5.3:60378086-60378105 | MS.gene58549:intron | 25.0% |
| !! | ATGACATTTTTGTATAAACC+GGG | - | chr5.3:60377775-60377794 | MS.gene58549:intron | 25.0% |
| !! | CATGACATTTTTGTATAAAC+CGG | - | chr5.3:60377774-60377793 | MS.gene58549:intron | 25.0% |
| !! | CATTTAAATTGACTTCTTAG+AGG | - | chr5.3:60378321-60378340 | MS.gene58549:intron | 25.0% |
| !! | GTTTGATTCTGCTTAATTTT+TGG | + | chr5.3:60378688-60378707 | None:intergenic | 25.0% |
| !!! | AAACACTACACTCTTTTTTT+TGG | + | chr5.3:60378140-60378159 | None:intergenic | 25.0% |
| !!! | AACACTACACTCTTTTTTTT+GGG | + | chr5.3:60378139-60378158 | None:intergenic | 25.0% |
| !!! | AACGCTACATTTTTTATTAC+AGG | + | chr5.3:60378003-60378022 | None:intergenic | 25.0% |
| !!! | AATTATCACATTCTGAAGTT+TGG | - | chr5.3:60378178-60378197 | MS.gene58549:intron | 25.0% |
| !!! | ATTTTGCTTCTTATTTGGAT+CGG | - | chr5.3:60378848-60378867 | MS.gene58549:intron | 25.0% |
| !!! | CATTTTGATTTCTAAACACT+AGG | - | chr5.3:60378735-60378754 | MS.gene58549:intron | 25.0% |
| !!! | GGTGCTTTTTTTAAAAGTTT+AGG | - | chr5.3:60378784-60378803 | MS.gene58549:intron | 25.0% |
| AAACAATTATTGTTCCTTGG+TGG | - | chr5.3:60377472-60377491 | MS.gene58549:intron | 30.0% | |
| AAAGCAAAGAAATTCTGTGA+AGG | + | chr5.3:60379860-60379879 | None:intergenic | 30.0% | |
| AACCATCACAAAATTCACTA+AGG | + | chr5.3:60378518-60378537 | None:intergenic | 30.0% | |
| AAGTAGTAGCTAACAACAAT+CGG | - | chr5.3:60379900-60379919 | MS.gene58549:intron | 30.0% | |
| AATCATCAATTGCAATAGCA+AGG | - | chr5.3:60376941-60376960 | MS.gene58549:intron | 30.0% | |
| AATGGGAATAGTTTCAATCA+AGG | - | chr5.3:60380029-60380048 | MS.gene58549:CDS | 30.0% | |
| AATGTCTAAAAGGGCTAAAA+AGG | - | chr5.3:60377230-60377249 | MS.gene58549:intron | 30.0% | |
| AGTGAACTTGAACAGTTATT+GGG | - | chr5.3:60379745-60379764 | MS.gene58549:CDS | 30.0% | |
| AGTTGAATAAGTAGGAAATC+CGG | + | chr5.3:60378084-60378103 | None:intergenic | 30.0% | |
| ATGGGAATAGTTTCAATCAA+GGG | - | chr5.3:60380030-60380049 | MS.gene58549:CDS | 30.0% | |
| CAACTAATTTAAACGCTCTT+GGG | - | chr5.3:60378285-60378304 | MS.gene58549:intron | 30.0% | |
| CCAAGGAACAATAATTGTTT+AGG | + | chr5.3:60377472-60377491 | None:intergenic | 30.0% | |
| CCTAAACAATTATTGTTCCT+TGG | - | chr5.3:60377469-60377488 | MS.gene58549:intron | 30.0% | |
| GATAACATTTGTGTAGTTTG+AGG | - | chr5.3:60379688-60379707 | MS.gene58549:CDS | 30.0% | |
| GTACATCACTAGTAATTAGT+CGG | - | chr5.3:60378428-60378447 | MS.gene58549:intron | 30.0% | |
| TAGAATATAAATGTGCTGCA+TGG | - | chr5.3:60378763-60378782 | MS.gene58549:intron | 30.0% | |
| TAGTAGAGTTTGGAAGAAAA+GGG | + | chr5.3:60376900-60376919 | None:intergenic | 30.0% | |
| TCAACTAATTTAAACGCTCT+TGG | - | chr5.3:60378284-60378303 | MS.gene58549:intron | 30.0% | |
| TCATTTCCTAAAACTTGTGT+TGG | - | chr5.3:60379136-60379155 | MS.gene58549:intron | 30.0% | |
| TCCTGACCATTAAATCAAAT+CGG | - | chr5.3:60379334-60379353 | MS.gene58549:intron | 30.0% | |
| TTGATTGAAACTATTCCCAT+TGG | + | chr5.3:60380030-60380049 | None:intergenic | 30.0% | |
| ! | AAGAGTCTCTTTTCTCATAT+TGG | - | chr5.3:60379504-60379523 | MS.gene58549:intron | 30.0% |
| ! | ATTTTTGTGTGTTAACCCTT+CGG | - | chr5.3:60377342-60377361 | MS.gene58549:intron | 30.0% |
| ! | CAAACATGCAATTTTTCATG+AGG | - | chr5.3:60378703-60378722 | MS.gene58549:intron | 30.0% |
| ! | CTTTTAAACGAGTTATCCTT+AGG | - | chr5.3:60377529-60377548 | MS.gene58549:intron | 30.0% |
| ! | GTAAAACCAACACAAGTTTT+AGG | + | chr5.3:60379145-60379164 | None:intergenic | 30.0% |
| ! | TTCCTAGGTGAAACAATTTT+TGG | + | chr5.3:60377434-60377453 | None:intergenic | 30.0% |
| !! | TCACCTTAAGTTGAATAAGT+AGG | + | chr5.3:60378092-60378111 | None:intergenic | 30.0% |
| !! | TGTGATAGTTTTACAGAGAA+TGG | + | chr5.3:60377733-60377752 | None:intergenic | 30.0% |
| !! | TTTTGCTTCTTATTTGGATC+GGG | - | chr5.3:60378849-60378868 | MS.gene58549:intron | 30.0% |
| !!! | AGATTGATGAAGGTGTTTTT+GGG | - | chr5.3:60377115-60377134 | MS.gene58549:intron | 30.0% |
| !!! | GAACTCAGTTTTTTATCCTA+AGG | + | chr5.3:60377548-60377567 | None:intergenic | 30.0% |
| !!! | TGATTTTGAGATTTGAACGA+TGG | + | chr5.3:60376926-60376945 | None:intergenic | 30.0% |
| !!! | TTTAAGATTGGGGTTTTGTT+TGG | - | chr5.3:60378585-60378604 | MS.gene58549:intron | 30.0% |
| AATCAAGGGAACAATTCCTT+TGG | - | chr5.3:60380044-60380063 | MS.gene58549:CDS | 35.0% | |
| AATGCATGTTTGACAGAATC+AGG | + | chr5.3:60377633-60377652 | None:intergenic | 35.0% | |
| AATGTTGACAAAGTAAACGG+AGG | + | chr5.3:60379108-60379127 | None:intergenic | 35.0% | |
| AATTTAAACGCTCTTGGGTT+GGG | - | chr5.3:60378290-60378309 | MS.gene58549:intron | 35.0% | |
| ACACCTTCATCAATCTCATA+TGG | + | chr5.3:60377111-60377130 | None:intergenic | 35.0% | |
| AGTAGTAGCTAACAACAATC+GGG | - | chr5.3:60379901-60379920 | MS.gene58549:intron | 35.0% | |
| CAACAATAAAACTCATGAGC+AGG | + | chr5.3:60377857-60377876 | None:intergenic | 35.0% | |
| CTTAGTGAAGACTGAAGAAA+AGG | + | chr5.3:60377307-60377326 | None:intergenic | 35.0% | |
| GAACCATATGAGATTGATGA+AGG | - | chr5.3:60377105-60377124 | MS.gene58549:intron | 35.0% | |
| GACCATTAAATCAAATCGGA+CGG | - | chr5.3:60379338-60379357 | MS.gene58549:intron | 35.0% | |
| GAGTGAACTTGAACAGTTAT+TGG | - | chr5.3:60379744-60379763 | MS.gene58549:CDS | 35.0% | |
| GTAGTAGAGTTTGGAAGAAA+AGG | + | chr5.3:60376901-60376920 | None:intergenic | 35.0% | |
| GTCGCTTCTAACTTAATCAA+AGG | + | chr5.3:60377907-60377926 | None:intergenic | 35.0% | |
| GTTGAATAAGTAGGAAATCC+GGG | + | chr5.3:60378083-60378102 | None:intergenic | 35.0% | |
| TAATTTAAACGCTCTTGGGT+TGG | - | chr5.3:60378289-60378308 | MS.gene58549:intron | 35.0% | |
| TGAGTTCGAACTCTCAAAAA+TGG | + | chr5.3:60378233-60378252 | None:intergenic | 35.0% | |
| TTATTTGGATCGGGAAATTC+AGG | - | chr5.3:60378858-60378877 | MS.gene58549:intron | 35.0% | |
| TTCACTAAGGAGTTACAAAG+AGG | + | chr5.3:60378505-60378524 | None:intergenic | 35.0% | |
| TTCTTCAGTCTTCACTAAGT+TGG | - | chr5.3:60377308-60377327 | MS.gene58549:intron | 35.0% | |
| TTGAATAAGTAGGAAATCCG+GGG | + | chr5.3:60378082-60378101 | None:intergenic | 35.0% | |
| TTGTAGCTGAATAACTCAAG+TGG | - | chr5.3:60377078-60377097 | MS.gene58549:intron | 35.0% | |
| ! | AAAGAAGATAAAGTGCTAGC+TGG | - | chr5.3:60379209-60379228 | MS.gene58549:intron | 35.0% |
| ! | ATGCAATTTTTCATGAGGCA+TGG | - | chr5.3:60378708-60378727 | MS.gene58549:intron | 35.0% |
| ! | ATTGTTTCTTCACTACTGTG+TGG | - | chr5.3:60378948-60378967 | MS.gene58549:intron | 35.0% |
| ! | CAATTCCAGAACCATACTTT+TGG | + | chr5.3:60379827-60379846 | None:intergenic | 35.0% |
| ! | CTCCTTAGTGAATTTTGTGA+TGG | - | chr5.3:60378513-60378532 | MS.gene58549:intron | 35.0% |
| ! | GAATATTGACTGTGAATTGC+AGG | - | chr5.3:60379923-60379942 | MS.gene58549:CDS | 35.0% |
| ! | TCCGATTTGATTTAATGGTC+AGG | + | chr5.3:60379338-60379357 | None:intergenic | 35.0% |
| ! | TTTTTGTATAAACCGGGCTT+CGG | - | chr5.3:60377781-60377800 | MS.gene58549:intron | 35.0% |
| !! | CACTGTATTTGCTGCAATTT+TGG | - | chr5.3:60379965-60379984 | MS.gene58549:CDS | 35.0% |
| !! | GAACATTGTTTTCTGAGAAG+TGG | + | chr5.3:60376860-60376879 | None:intergenic | 35.0% |
| !! | GTTTGGATTAGCTAATCTTG+TGG | - | chr5.3:60378602-60378621 | MS.gene58549:intron | 35.0% |
| !! | TTTTGGGTCAATTAGCATAG+TGG | + | chr5.3:60378123-60378142 | None:intergenic | 35.0% |
| !! | TTTTTGAGAGTTCGAACTCA+AGG | - | chr5.3:60378233-60378252 | MS.gene58549:intron | 35.0% |
| !!! | AGGTTTCTTTTGCTGTTGAT+GGG | - | chr5.3:60378878-60378897 | MS.gene58549:intron | 35.0% |
| !!! | ATTGATGAAGGTGTTTTTGG+GGG | - | chr5.3:60377117-60377136 | MS.gene58549:intron | 35.0% |
| !!! | GAGATTGATGAAGGTGTTTT+TGG | - | chr5.3:60377114-60377133 | MS.gene58549:intron | 35.0% |
| !!! | GATTGATGAAGGTGTTTTTG+GGG | - | chr5.3:60377116-60377135 | MS.gene58549:intron | 35.0% |
| !!! | TAGGTGAAACAATTTTTGGC+CGG | + | chr5.3:60377430-60377449 | None:intergenic | 35.0% |
| AAGAGGAGAAGGAAACTTGA+AGG | + | chr5.3:60378488-60378507 | None:intergenic | 40.0% | |
| AAGGAGAAACTTACGAGTTG+AGG | + | chr5.3:60377288-60377307 | None:intergenic | 40.0% | |
| AAGGAGTTACAAAGAGGAGA+AGG | + | chr5.3:60378499-60378518 | None:intergenic | 40.0% | |
| ACCGTTCGATGTGATATCAA+TGG | + | chr5.3:60379290-60379309 | None:intergenic | 40.0% | |
| ACGATGGTTGTAGTAGAGTT+TGG | + | chr5.3:60376910-60376929 | None:intergenic | 40.0% | |
| ACTTGAACAGTTATTGGGAC+TGG | - | chr5.3:60379750-60379769 | MS.gene58549:CDS | 40.0% | |
| AGAGTTTGGAAGAAAAGGGT+TGG | + | chr5.3:60376896-60376915 | None:intergenic | 40.0% | |
| AGCTAGGGATGTTGTATTTC+AGG | - | chr5.3:60379415-60379434 | MS.gene58549:intron | 40.0% | |
| AGTTGAGGAGATATCACTGT+AGG | + | chr5.3:60377273-60377292 | None:intergenic | 40.0% | |
| GCAAAATGAAAAAGCGGTCA+AGG | + | chr5.3:60378835-60378854 | None:intergenic | 40.0% | |
| GCCATTGATATCACATCGAA+CGG | - | chr5.3:60379286-60379305 | MS.gene58549:intron | 40.0% | |
| GGCCAAAAATTGTTTCACCT+AGG | - | chr5.3:60377429-60377448 | MS.gene58549:intron | 40.0% | |
| GGGTTAACACACAAAAATGC+CGG | + | chr5.3:60377340-60377359 | None:intergenic | 40.0% | |
| TAGCTGAATAACTCAAGTGG+TGG | - | chr5.3:60377081-60377100 | MS.gene58549:intron | 40.0% | |
| TGAAACTATTCCCATTGGAC+TGG | + | chr5.3:60380025-60380044 | None:intergenic | 40.0% | |
| TTTATTACAGCAGGGAATCC+TGG | + | chr5.3:60379236-60379255 | None:intergenic | 40.0% | |
| TTTCACCTAGGAATCGAACT+CGG | - | chr5.3:60377441-60377460 | MS.gene58549:intron | 40.0% | |
| TTTCTCACTTCCAGTCCAAT+GGG | - | chr5.3:60380012-60380031 | MS.gene58549:CDS | 40.0% | |
| ! | AGGACGAGTCATTGTGATTT+TGG | + | chr5.3:60377613-60377632 | None:intergenic | 40.0% |
| ! | GACCCTTGTAATCTAGAGTT+CGG | - | chr5.3:60377386-60377405 | MS.gene58549:intron | 40.0% |
| ! | GCTAACCAAAAGTATGGTTC+TGG | - | chr5.3:60379819-60379838 | MS.gene58549:intron | 40.0% |
| ! | TGTTAACCCTTCGGTTTTCA+GGG | - | chr5.3:60377351-60377370 | MS.gene58549:intron | 40.0% |
| ! | TGTTGTCAAAGCACTTCTTG+AGG | - | chr5.3:60378924-60378943 | MS.gene58549:intron | 40.0% |
| ! | TTAAATGCTCTTGGGTTGCA+TGG | - | chr5.3:60377941-60377960 | MS.gene58549:CDS | 40.0% |
| ! | TTCACTAAGTTGGCGAAATC+CGG | - | chr5.3:60377318-60377337 | MS.gene58549:intron | 40.0% |
| ! | TTCTGAGAAGTGGTGAAGAT+TGG | + | chr5.3:60376850-60376869 | None:intergenic | 40.0% |
| ! | TTTTGTATAAACCGGGCTTC+GGG | - | chr5.3:60377782-60377801 | MS.gene58549:intron | 40.0% |
| !!! | CAGGTTTCTTTTGCTGTTGA+TGG | - | chr5.3:60378877-60378896 | MS.gene58549:intron | 40.0% |
| !!! | CTCAAGGTTTTTAGTCGAAC+TGG | - | chr5.3:60378249-60378268 | MS.gene58549:intron | 40.0% |
| !!! | GTGTTTTTGGGGGATATGAT+GGG | - | chr5.3:60377127-60377146 | MS.gene58549:intron | 40.0% |
| AAAGGGCTAAAAAGGCTTCG+AGG | - | chr5.3:60377238-60377257 | MS.gene58549:intron | 45.0% | |
| AAGTGGTGAAGATTGGAGCA+TGG | + | chr5.3:60376843-60376862 | None:intergenic | 45.0% | |
| ATATCCCTACCAACTGCTCA+CGG | + | chr5.3:60378032-60378051 | None:intergenic | 45.0% | |
| GATAAGCAATTGGGCTCAAG+TGG | + | chr5.3:60377508-60377527 | None:intergenic | 45.0% | |
| GGCCGAACTCTAGATTACAA+GGG | + | chr5.3:60377391-60377410 | None:intergenic | 45.0% | |
| GTTTCTCACTTCCAGTCCAA+TGG | - | chr5.3:60380011-60380030 | MS.gene58549:CDS | 45.0% | |
| TAACAGCAGGAAATCCAGTC+CGG | - | chr5.3:60379387-60379406 | MS.gene58549:intron | 45.0% | |
| TGGCCGAACTCTAGATTACA+AGG | + | chr5.3:60377392-60377411 | None:intergenic | 45.0% | |
| TTCACCTAGGAATCGAACTC+GGG | - | chr5.3:60377442-60377461 | MS.gene58549:intron | 45.0% | |
| TTGCAGGTCATCTGCAACAT+TGG | - | chr5.3:60379939-60379958 | MS.gene58549:CDS | 45.0% | |
| ! | ACTGCGTGCTTTATTACAGC+AGG | + | chr5.3:60379245-60379264 | None:intergenic | 45.0% |
| ! | CTGCGTGCTTTATTACAGCA+GGG | + | chr5.3:60379244-60379263 | None:intergenic | 45.0% |
| ! | GGCCGTCCGATTTGATTTAA+TGG | + | chr5.3:60379343-60379362 | None:intergenic | 45.0% |
| ! | GGGATATGATGGGATTGAAG+AGG | - | chr5.3:60377137-60377156 | MS.gene58549:intron | 45.0% |
| ! | GTGTTAACCCTTCGGTTTTC+AGG | - | chr5.3:60377350-60377369 | MS.gene58549:intron | 45.0% |
| ! | GTTAACCCTTCGGTTTTCAG+GGG | - | chr5.3:60377352-60377371 | MS.gene58549:intron | 45.0% |
| !! | AGCAGTTGGTAGGGATATTG+CGG | - | chr5.3:60378034-60378053 | MS.gene58549:intron | 45.0% |
| !!! | GGTGTTTTTGGGGGATATGA+TGG | - | chr5.3:60377126-60377145 | MS.gene58549:intron | 45.0% |
| AGAACCCGAGTTCGATTCCT+AGG | + | chr5.3:60377449-60377468 | None:intergenic | 50.0% | |
| AGCGGTCAAGGACACATTGA+AGG | + | chr5.3:60378823-60378842 | None:intergenic | 50.0% | |
| ATATTGCGGTATGCAGGAGC+TGG | - | chr5.3:60378048-60378067 | MS.gene58549:intron | 50.0% | |
| ATCGGAATGCAACCCTGAGT+CGG | - | chr5.3:60377806-60377825 | MS.gene58549:intron | 50.0% | |
| CAACATCCCTAGCTAAGCAC+CGG | + | chr5.3:60379409-60379428 | None:intergenic | 50.0% | |
| CACCGTAGGCTGAGTTATGT+GGG | - | chr5.3:60379660-60379679 | MS.gene58549:CDS | 50.0% | |
| CAGGACGCTGTAACAGATCA+GGG | + | chr5.3:60379364-60379383 | None:intergenic | 50.0% | |
| CAGGTCATCTGCAACATTGG+AGG | - | chr5.3:60379942-60379961 | MS.gene58549:CDS | 50.0% | |
| CCTATCCCCTGAAAACCGAA+GGG | + | chr5.3:60377360-60377379 | None:intergenic | 50.0% | |
| CTCCCACATAACTCAGCCTA+CGG | + | chr5.3:60379665-60379684 | None:intergenic | 50.0% | |
| GGATTTCCTGCTGTTACAGC+AGG | + | chr5.3:60379383-60379402 | None:intergenic | 50.0% | |
| GTAGGCTGAGTTATGTGGGA+GGG | - | chr5.3:60379664-60379683 | MS.gene58549:CDS | 50.0% | |
| GTAGGGATATTGCGGTATGC+AGG | - | chr5.3:60378042-60378061 | MS.gene58549:intron | 50.0% | |
| GTGAAGATTGGAGCATGGAG+AGG | + | chr5.3:60376838-60376857 | None:intergenic | 50.0% | |
| GTGGTTAATGAGCTCCACCA+AGG | + | chr5.3:60377489-60377508 | None:intergenic | 50.0% | |
| TATCCCTACCAACTGCTCAC+GGG | + | chr5.3:60378031-60378050 | None:intergenic | 50.0% | |
| TATTGCGGTATGCAGGAGCT+GGG | - | chr5.3:60378049-60378068 | MS.gene58549:intron | 50.0% | |
| TTTGGCCCTGCGTGTGATAT+GGG | - | chr5.3:60379983-60380002 | MS.gene58549:CDS | 50.0% | |
| ! | CAGGAGTTTTGCCACTCATG+TGG | + | chr5.3:60377838-60377857 | None:intergenic | 50.0% |
| ! | GATAAAGTGCTAGCTGGACC+AGG | - | chr5.3:60379215-60379234 | MS.gene58549:intron | 50.0% |
| ! | TTTTGGCCCTGCGTGTGATA+TGG | - | chr5.3:60379982-60380001 | MS.gene58549:CDS | 50.0% |
| !! | CCTTCGGTTTTCAGGGGATA+GGG | - | chr5.3:60377358-60377377 | MS.gene58549:intron | 50.0% |
| AATGCAACCCTGAGTCGGGT+GGG | - | chr5.3:60377811-60377830 | MS.gene58549:intron | 55.0% | |
| AGCTGCCCATATCACACGCA+GGG | + | chr5.3:60379991-60380010 | None:intergenic | 55.0% | |
| ATAAACCGGGCTTCGGGCAT+CGG | - | chr5.3:60377788-60377807 | MS.gene58549:intron | 55.0% | |
| ATCCAGTCCGGTGCTTAGCT+AGG | - | chr5.3:60379399-60379418 | MS.gene58549:intron | 55.0% | |
| ATCCCTACCAACTGCTCACG+GGG | + | chr5.3:60378030-60378049 | None:intergenic | 55.0% | |
| ATTGCGGTATGCAGGAGCTG+GGG | - | chr5.3:60378050-60378069 | MS.gene58549:intron | 55.0% | |
| CCCTATCCCCTGAAAACCGA+AGG | + | chr5.3:60377361-60377380 | None:intergenic | 55.0% | |
| CGTAGGCTGAGTTATGTGGG+AGG | - | chr5.3:60379663-60379682 | MS.gene58549:CDS | 55.0% | |
| GCACCGTAGGCTGAGTTATG+TGG | - | chr5.3:60379659-60379678 | MS.gene58549:CDS | 55.0% | |
| GCAGGACGCTGTAACAGATC+AGG | + | chr5.3:60379365-60379384 | None:intergenic | 55.0% | |
| GCCACGAGCTAAGTTAGGTC+CGG | - | chr5.3:60377408-60377427 | MS.gene58549:intron | 55.0% | |
| GTTCGGCCACGAGCTAAGTT+AGG | - | chr5.3:60377403-60377422 | MS.gene58549:intron | 55.0% | |
| GTTTAGTCCCCGTGAGCAGT+TGG | - | chr5.3:60378020-60378039 | MS.gene58549:intron | 55.0% | |
| TCCAGTCCGGTGCTTAGCTA+GGG | - | chr5.3:60379400-60379419 | MS.gene58549:intron | 55.0% | |
| TCGGAATGCAACCCTGAGTC+GGG | - | chr5.3:60377807-60377826 | MS.gene58549:intron | 55.0% | |
| !! | CCCTTCGGTTTTCAGGGGAT+AGG | - | chr5.3:60377357-60377376 | MS.gene58549:intron | 55.0% |
| AGTCCCCGTGAGCAGTTGGT+AGG | - | chr5.3:60378024-60378043 | MS.gene58549:intron | 60.0% | |
| ATGTGGTCCCACCCGACTCA+GGG | + | chr5.3:60377821-60377840 | None:intergenic | 60.0% | |
| CAGCGTCCTGCTGTAACAGC+AGG | - | chr5.3:60379374-60379393 | MS.gene58549:intron | 60.0% | |
| CAGCTGCCCATATCACACGC+AGG | + | chr5.3:60379992-60380011 | None:intergenic | 60.0% | |
| GAATGCAACCCTGAGTCGGG+TGG | - | chr5.3:60377810-60377829 | MS.gene58549:intron | 60.0% | |
| GCCGGACCTAACTTAGCTCG+TGG | + | chr5.3:60377412-60377431 | None:intergenic | 60.0% | |
| GGACTTGCGTGATGCACCGT+AGG | - | chr5.3:60379646-60379665 | MS.gene58549:CDS | 60.0% | |
| ! | GTCCCCGTGAGCAGTTGGTA+GGG | - | chr5.3:60378025-60378044 | MS.gene58549:intron | 60.0% |
| !! | TCCCTAGCTAAGCACCGGAC+TGG | + | chr5.3:60379404-60379423 | None:intergenic | 60.0% |
| AGGAGCTGGGGTTCGAACCC+CGG | - | chr5.3:60378062-60378081 | MS.gene58549:intron | 65.0% | |
| CATGTGGTCCCACCCGACTC+AGG | + | chr5.3:60377822-60377841 | None:intergenic | 65.0% | |
| GCATTCCGATGCCCGAAGCC+CGG | + | chr5.3:60377796-60377815 | None:intergenic | 65.0% | |
| GTCGGGTGGGACCACATGAG+TGG | - | chr5.3:60377824-60377843 | MS.gene58549:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 60376802 | 60380079 | 60376802 | ID=MS.gene58549 |
| chr5.3 | mRNA | 60376802 | 60380079 | 60376802 | ID=MS.gene58549.t1;Parent=MS.gene58549 |
| chr5.3 | exon | 60379919 | 60380079 | 60379919 | ID=MS.gene58549.t1.exon1;Parent=MS.gene58549.t1 |
| chr5.3 | CDS | 60379919 | 60380079 | 60379919 | ID=cds.MS.gene58549.t1;Parent=MS.gene58549.t1 |
| chr5.3 | exon | 60379588 | 60379797 | 60379588 | ID=MS.gene58549.t1.exon2;Parent=MS.gene58549.t1 |
| chr5.3 | CDS | 60379588 | 60379797 | 60379588 | ID=cds.MS.gene58549.t1;Parent=MS.gene58549.t1 |
| chr5.3 | exon | 60377936 | 60378001 | 60377936 | ID=MS.gene58549.t1.exon3;Parent=MS.gene58549.t1 |
| chr5.3 | CDS | 60377936 | 60378001 | 60377936 | ID=cds.MS.gene58549.t1;Parent=MS.gene58549.t1 |
| chr5.3 | exon | 60376802 | 60376936 | 60376802 | ID=MS.gene58549.t1.exon4;Parent=MS.gene58549.t1 |
| chr5.3 | CDS | 60376802 | 60376936 | 60376802 | ID=cds.MS.gene58549.t1;Parent=MS.gene58549.t1 |
| Gene Sequence |
| Protein sequence |
