Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58726.t1 | XP_013458177.1 | 99.4 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58726.t1 | P50651 | 80.3 | 319 | 63 | 0 | 1 | 319 | 23 | 341 | 4.3e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58726.t1 | A0A072USZ2 | 99.4 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene58726 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene051064 | MS.gene58726 | 0.823725 | 1.19E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene58726 | 0.848384 | 6.34E-60 | -1.69E-46 |
| MS.gene052309 | MS.gene58726 | -0.836559 | 8.72E-57 | -1.69E-46 |
| MS.gene052333 | MS.gene58726 | 0.800675 | 1.29E-48 | -1.69E-46 |
| MS.gene052358 | MS.gene58726 | -0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene58726 | 0.807173 | 5.75E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene58726 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene58726 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene58726 | 0.835576 | 1.55E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene58726 | -0.824048 | 9.97E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58726.t1 | MTR_4g117370 | 99.373 | 319 | 2 | 0 | 1 | 319 | 23 | 341 | 0.0 | 659 |
| MS.gene58726.t1 | MTR_8g469010 | 77.287 | 317 | 68 | 1 | 3 | 319 | 13 | 325 | 0.0 | 521 |
| MS.gene58726.t1 | MTR_1g050472 | 76.730 | 318 | 73 | 1 | 3 | 319 | 13 | 330 | 0.0 | 520 |
| MS.gene58726.t1 | MTR_0268s0080 | 76.730 | 318 | 73 | 1 | 3 | 319 | 13 | 330 | 0.0 | 518 |
| MS.gene58726.t1 | MTR_7g029110 | 76.803 | 319 | 73 | 1 | 2 | 319 | 12 | 330 | 2.34e-180 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58726.t1 | AT3G23580 | 80.251 | 319 | 63 | 0 | 1 | 319 | 23 | 341 | 0.0 | 548 |
| MS.gene58726.t1 | AT3G27060 | 75.710 | 317 | 74 | 2 | 6 | 319 | 16 | 332 | 4.83e-176 | 490 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTTCTGTGCCATATTC+TGG | 0.174738 | 8.1:+9912765 | MS.gene58726:intron |
| AAAAGGCTGAAGCCAGTTTC+TGG | 0.208732 | 8.1:+9910807 | MS.gene58726:CDS |
| TGATAGGCTCGGGCATTCTA+TGG | 0.295173 | 8.1:+9912060 | MS.gene58726:intron |
| TTGCCCTTTCAGGTTTCCTT+GGG | 0.310825 | 8.1:+9913245 | MS.gene58726:intron |
| TTTGCCCTTTCAGGTTTCCT+TGG | 0.319161 | 8.1:+9913244 | MS.gene58726:intron |
| GGGCATTGAGTTGGATTAAC+AGG | 0.324433 | 8.1:+9912302 | MS.gene58726:CDS |
| TCTGAATGATGTTCAAATTC+CGG | 0.339797 | 8.1:+9911676 | MS.gene58726:CDS |
| TACATCTGATGGAATCGTTT+TGG | 0.341636 | 8.1:+9911634 | MS.gene58726:CDS |
| AAAGTTGTTTGTAGCGAATA+GGG | 0.351905 | 8.1:-9910772 | None:intergenic |
| GCCCTCCCTTGTGCATTGAT+TGG | 0.362088 | 8.1:+9913078 | MS.gene58726:CDS |
| CAAAGTTGTTTGTAGCGAAT+AGG | 0.369374 | 8.1:-9910773 | None:intergenic |
| GTATGTACCGGTCCAGAAAC+TGG | 0.373363 | 8.1:-9910819 | None:intergenic |
| ATTTGTCGCTGACAGGCTAT+TGG | 0.379699 | 8.1:+9913134 | MS.gene58726:CDS |
| GCAATCGAGAATATTCATTC+TGG | 0.401015 | 8.1:+9912093 | MS.gene58726:CDS |
| CAAAGTTCTTCCCATCATCT+TGG | 0.402459 | 8.1:-9913725 | None:intergenic |
| TATTCGCTACAAACAACTTT+GGG | 0.404981 | 8.1:+9910775 | MS.gene58726:CDS |
| TCATTTGCGGAGAGACTTGT+TGG | 0.417465 | 8.1:+9912584 | MS.gene58726:CDS |
| CTATTCGCTACAAACAACTT+TGG | 0.419868 | 8.1:+9910774 | MS.gene58726:CDS |
| GTTGGCTTTGCATGTGTTGA+AGG | 0.420322 | 8.1:+9912602 | MS.gene58726:CDS |
| ACGTGGAAAATCCCTTTGAT+TGG | 0.420885 | 8.1:+9913285 | MS.gene58726:CDS |
| CTGCAGTTCCACTTCATTTG+CGG | 0.421908 | 8.1:+9912571 | MS.gene58726:intron |
| ACTTTGGGAGATGTACAAAA+AGG | 0.422922 | 8.1:+9910790 | MS.gene58726:CDS |
| TATGTATTGGCTCATAAGCT+TGG | 0.458646 | 8.1:-9913109 | None:intergenic |
| TCTTCCTTGTGTTGCAAGGA+AGG | 0.470108 | 8.1:+9912273 | MS.gene58726:CDS |
| AGGCTGAATGGGCATTGAGT+TGG | 0.487477 | 8.1:+9912293 | MS.gene58726:CDS |
| GGAAAATCCCTTTGATTGGA+TGG | 0.494213 | 8.1:+9913289 | MS.gene58726:CDS |
| ACATAAAATTTGTCGCTGAC+AGG | 0.498315 | 8.1:+9913127 | MS.gene58726:CDS |
| AATAAAGTCCATCCAATCAA+AGG | 0.508574 | 8.1:-9913297 | None:intergenic |
| CTCCTATGATGTACAACACT+GGG | 0.518556 | 8.1:+9911556 | MS.gene58726:CDS |
| AGTTCTTCCCATCATCTTGG+AGG | 0.524128 | 8.1:-9913722 | None:intergenic |
| GAGACAGCTAGATTTCGAAC+GGG | 0.536560 | 8.1:+9913002 | MS.gene58726:CDS |
| ATAAAGTCCATCCAATCAAA+GGG | 0.536591 | 8.1:-9913296 | None:intergenic |
| TGCCCAGTGTTGTACATCAT+AGG | 0.537246 | 8.1:-9911558 | None:intergenic |
| ATGTCAAGCCTCCAAGATGA+TGG | 0.539662 | 8.1:+9913714 | MS.gene58726:CDS |
| AAAATCTTCCTTGTGTTGCA+AGG | 0.541514 | 8.1:+9912269 | MS.gene58726:CDS |
| GTGTTGCAAGGAAGGCTGAA+TGG | 0.543120 | 8.1:+9912281 | MS.gene58726:CDS |
| AAGTCTCTCCGCAAATGAAG+TGG | 0.544352 | 8.1:-9912579 | None:intergenic |
| GCCAATCAATGCACAAGGGA+GGG | 0.550023 | 8.1:-9913079 | None:intergenic |
| TGTTGCAAGGAAGGCTGAAT+GGG | 0.552298 | 8.1:+9912282 | MS.gene58726:CDS |
| TTGGCTTTGCATGTGTTGAA+GGG | 0.555305 | 8.1:+9912603 | MS.gene58726:CDS |
| TGAGACAGCTAGATTTCGAA+CGG | 0.575367 | 8.1:+9913001 | MS.gene58726:CDS |
| TCAGCCTTCCTTGCAACACA+AGG | 0.584139 | 8.1:-9912277 | None:intergenic |
| AGAGATGTATAGCTTGCTGT+TGG | 0.591810 | 8.1:+9912195 | MS.gene58726:intron |
| TGCCAATCAATGCACAAGGG+AGG | 0.592084 | 8.1:-9913080 | None:intergenic |
| TCTCCTATGATGTACAACAC+TGG | 0.592747 | 8.1:+9911555 | MS.gene58726:CDS |
| TGCCCTTTCAGGTTTCCTTG+GGG | 0.594621 | 8.1:+9913246 | MS.gene58726:intron |
| AAGTTGGTTGACAGCTGAAG+AGG | 0.595614 | 8.1:+9911526 | MS.gene58726:intron |
| GCTGAAGCCAGTTTCTGGAC+CGG | 0.596341 | 8.1:+9910812 | MS.gene58726:CDS |
| AACATGATTGAGCAGAGGAA+AGG | 0.603731 | 8.1:+9913644 | MS.gene58726:intron |
| TGTCAAGCCTCCAAGATGAT+GGG | 0.607267 | 8.1:+9913715 | MS.gene58726:CDS |
| TTCATGCCAATCAATGCACA+AGG | 0.618751 | 8.1:-9913084 | None:intergenic |
| TATGAAGTGCTTCTCAGAGT+CGG | 0.621934 | 8.1:-9911588 | None:intergenic |
| AAGGGTGGGTGATTATCAGA+AGG | 0.633466 | 8.1:+9913683 | MS.gene58726:CDS |
| GTGCTTCTCAGAGTCGGACA+AGG | 0.636420 | 8.1:-9911582 | None:intergenic |
| GAGGGCATCACAGACAAACT+CGG | 0.641352 | 8.1:-9913061 | None:intergenic |
| TCATTTGAGAATGTCAGACC+CGG | 0.642175 | 8.1:-9912809 | None:intergenic |
| GAATGATGTTCAAATTCCGG+AGG | 0.652575 | 8.1:+9911679 | MS.gene58726:CDS |
| GAGCTAATCTCTAGAGACGA+GGG | 0.653908 | 8.1:+9912830 | MS.gene58726:CDS |
| TGAGCTAATCTCTAGAGACG+AGG | 0.689131 | 8.1:+9912829 | MS.gene58726:CDS |
| TACTAATGAAACAAACACAG+AGG | 0.751367 | 8.1:+9910738 | None:intergenic |
| TCATGCCAATCAATGCACAA+GGG | 0.758595 | 8.1:-9913083 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATTATATTTATTGAT+AGG | + | chr8.1:9912044-9912063 | MS.gene58726:intron | 10.0% |
| !! | GTAATTAAATCATATTAAAT+TGG | + | chr8.1:9911066-9911085 | MS.gene58726:intron | 10.0% |
| !!! | AAAAAAATTAAATTGTTGTT+TGG | - | chr8.1:9911035-9911054 | None:intergenic | 10.0% |
| !! | TAATTAAAATTGAATGATCA+AGG | - | chr8.1:9911503-9911522 | None:intergenic | 15.0% |
| !!! | TAATGTTTTGATATTAGTTT+TGG | + | chr8.1:9912941-9912960 | MS.gene58726:intron | 15.0% |
| !!! | TTAATTTTCATAGTACTTTT+TGG | + | chr8.1:9911886-9911905 | MS.gene58726:intron | 15.0% |
| !!! | TTATGTTAATTCTTCTTTTA+AGG | + | chr8.1:9911857-9911876 | MS.gene58726:intron | 15.0% |
| !! | AAAGAAAAAAATGTATGTAC+CGG | - | chr8.1:9910834-9910853 | None:intergenic | 20.0% |
| !! | AATAGTACAAAATTGAAGTT+TGG | - | chr8.1:9910921-9910940 | None:intergenic | 20.0% |
| !! | AATTTGTAATAGTAAAAGTC+TGG | + | chr8.1:9912377-9912396 | MS.gene58726:intron | 20.0% |
| !! | ATTATATTTATTGATAGGCT+CGG | + | chr8.1:9912049-9912068 | MS.gene58726:intron | 20.0% |
| !!! | AACTTTTGAAAAAGAAACAA+GGG | - | chr8.1:9912684-9912703 | None:intergenic | 20.0% |
| !!! | ACTTTTTCATTCATTAGTTT+TGG | + | chr8.1:9912899-9912918 | MS.gene58726:intron | 20.0% |
| !!! | TCAATTTTAATTACTGAAGT+TGG | + | chr8.1:9911510-9911529 | MS.gene58726:intron | 20.0% |
| !!! | TCTTGAAAAAATATTGACTT+AGG | + | chr8.1:9913382-9913401 | MS.gene58726:intron | 20.0% |
| !!! | TTTTGAATGTATTTTGAAGA+TGG | + | chr8.1:9911324-9911343 | MS.gene58726:intron | 20.0% |
| ! | AAGGCAAAAATGATAAATCT+CGG | + | chr8.1:9912473-9912492 | MS.gene58726:intron | 25.0% |
| ! | AAGTAGTATGTGAAACTAAT+CGG | - | chr8.1:9911767-9911786 | None:intergenic | 25.0% |
| ! | AATTGTTAAAAAGTTAACCC+AGG | - | chr8.1:9912028-9912047 | None:intergenic | 25.0% |
| ! | ATCATGTACCAAAAATTGAT+TGG | + | chr8.1:9912404-9912423 | MS.gene58726:intron | 25.0% |
| ! | ATTGAATGATCAAGGTAAAA+AGG | - | chr8.1:9911495-9911514 | None:intergenic | 25.0% |
| ! | CAAAAATAAAACCACAAATC+AGG | - | chr8.1:9912173-9912192 | None:intergenic | 25.0% |
| ! | CAAACCATAATTGAAAAGAA+GGG | - | chr8.1:9912742-9912761 | None:intergenic | 25.0% |
| ! | GAAATATTATGATAAGGAAG+AGG | - | chr8.1:9912142-9912161 | None:intergenic | 25.0% |
| ! | GAATGATAAAACAGATGTAA+TGG | - | chr8.1:9913364-9913383 | None:intergenic | 25.0% |
| ! | TAGATGACAGAGAAAAATAA+TGG | - | chr8.1:9910882-9910901 | None:intergenic | 25.0% |
| ! | TATCCAATCACATAATACAA+TGG | + | chr8.1:9913607-9913626 | MS.gene58726:intron | 25.0% |
| ! | TCAATTATAGTTTCCAAAAG+TGG | - | chr8.1:9911436-9911455 | None:intergenic | 25.0% |
| ! | TTACTATTACAAATTGCAAC+AGG | - | chr8.1:9912372-9912391 | None:intergenic | 25.0% |
| ! | TTATATTTATTGATAGGCTC+GGG | + | chr8.1:9912050-9912069 | MS.gene58726:intron | 25.0% |
| !! | AACAGATGTAATGGAATAAA+TGG | - | chr8.1:9913355-9913374 | None:intergenic | 25.0% |
| !! | AATTTTCAGTGAAAGATTAG+AGG | + | chr8.1:9911272-9911291 | MS.gene58726:intron | 25.0% |
| !! | ATTTTATTCATCCCTTTCTT+TGG | + | chr8.1:9910938-9910957 | MS.gene58726:intron | 25.0% |
| !! | GAAAAATAATGGAAAAACAG+AGG | - | chr8.1:9910871-9910890 | None:intergenic | 25.0% |
| !! | TAGTGCAGTTATCTTTTAAA+GGG | + | chr8.1:9912506-9912525 | MS.gene58726:intron | 25.0% |
| !! | TATTAAATTGGTTTCTCTGA+AGG | + | chr8.1:9911078-9911097 | MS.gene58726:intron | 25.0% |
| !! | TGAGATATTTTCCAAAGAAA+GGG | - | chr8.1:9910952-9910971 | None:intergenic | 25.0% |
| !! | TTAGTGCAGTTATCTTTTAA+AGG | + | chr8.1:9912505-9912524 | MS.gene58726:intron | 25.0% |
| !! | TTGAGATATTTTCCAAAGAA+AGG | - | chr8.1:9910953-9910972 | None:intergenic | 25.0% |
| !! | TTTCCACGTTGTAAATTTTT+AGG | - | chr8.1:9913274-9913293 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGAACAACAATC+TGG | + | chr8.1:9911158-9911177 | MS.gene58726:intron | 25.0% |
| !!! | ATCAATTTTTGGTACATGAT+AGG | - | chr8.1:9912404-9912423 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTGGATGATTCAA+TGG | + | chr8.1:9912953-9912972 | MS.gene58726:intron | 25.0% |
| !!! | ATTTATCATTTTTGCCTTTC+TGG | - | chr8.1:9912471-9912490 | None:intergenic | 25.0% |
| !!! | CAAAAATTGATTGGTTTGAT+GGG | + | chr8.1:9912413-9912432 | MS.gene58726:intron | 25.0% |
| !!! | CAACTTTTGAAAAAGAAACA+AGG | - | chr8.1:9912685-9912704 | None:intergenic | 25.0% |
| !!! | GTTAATTCTTCTTTTAAGGA+TGG | + | chr8.1:9911861-9911880 | MS.gene58726:intron | 25.0% |
| !!! | TCAATTTTTGGTACATGATA+GGG | - | chr8.1:9912403-9912422 | None:intergenic | 25.0% |
| AAAGTTGTTTGTAGCGAATA+GGG | - | chr8.1:9910775-9910794 | None:intergenic | 30.0% | |
| AAGCCATTGTATTATGTGAT+TGG | - | chr8.1:9913613-9913632 | None:intergenic | 30.0% | |
| AATAAAGTCCATCCAATCAA+AGG | - | chr8.1:9913300-9913319 | None:intergenic | 30.0% | |
| AATAGCTTCTCATAATGCAT+GGG | + | chr8.1:9912548-9912567 | MS.gene58726:intron | 30.0% | |
| AGGGGAGAAATATTATGATA+AGG | - | chr8.1:9912148-9912167 | None:intergenic | 30.0% | |
| ATAAAGTCCATCCAATCAAA+GGG | - | chr8.1:9913299-9913318 | None:intergenic | 30.0% | |
| ATATTATGATAAGGAAGAGG+AGG | - | chr8.1:9912139-9912158 | None:intergenic | 30.0% | |
| CAAAACAAAATCACAACTCT+AGG | - | chr8.1:9911970-9911989 | None:intergenic | 30.0% | |
| GAAACTAATCGGTAAATTGA+GGG | - | chr8.1:9911756-9911775 | None:intergenic | 30.0% | |
| GAACAAACAATCAAAAGACA+AGG | - | chr8.1:9911948-9911967 | None:intergenic | 30.0% | |
| GCAAACCATAATTGAAAAGA+AGG | - | chr8.1:9912743-9912762 | None:intergenic | 30.0% | |
| GGCAAACTAGTTAAGTAAAT+AGG | - | chr8.1:9912721-9912740 | None:intergenic | 30.0% | |
| GTGTTTGTATCATGAAATAC+AGG | - | chr8.1:9913413-9913432 | None:intergenic | 30.0% | |
| TAAAAAGAGAGGATTAATGC+CGG | + | chr8.1:9912790-9912809 | MS.gene58726:CDS | 30.0% | |
| TAATAGCTTCTCATAATGCA+TGG | + | chr8.1:9912547-9912566 | MS.gene58726:intron | 30.0% | |
| TATTCGCTACAAACAACTTT+GGG | + | chr8.1:9910775-9910794 | MS.gene58726:CDS | 30.0% | |
| TCTGAATGATGTTCAAATTC+CGG | + | chr8.1:9911676-9911695 | MS.gene58726:CDS | 30.0% | |
| TGAAACTAATCGGTAAATTG+AGG | - | chr8.1:9911757-9911776 | None:intergenic | 30.0% | |
| TTAACATAAAGTACAGCCTA+AGG | - | chr8.1:9911846-9911865 | None:intergenic | 30.0% | |
| TTATAATTCCCATGTTACCA+AGG | - | chr8.1:9913186-9913205 | None:intergenic | 30.0% | |
| TTTGATGAGATTCTGATGAA+TGG | + | chr8.1:9911360-9911379 | MS.gene58726:intron | 30.0% | |
| ! | AAAATGTTTTCGTTTTGCCT+TGG | + | chr8.1:9913166-9913185 | MS.gene58726:intron | 30.0% |
| ! | AAAGACAAGGTGCTAAAATA+AGG | - | chr8.1:9911935-9911954 | None:intergenic | 30.0% |
| ! | AGAGACACTAATTTGTGTAA+AGG | - | chr8.1:9911111-9911130 | None:intergenic | 30.0% |
| ! | CAGCGACAAATTTTATGTAT+TGG | - | chr8.1:9913125-9913144 | None:intergenic | 30.0% |
| ! | CCATCAAACCAATCAATTTT+TGG | - | chr8.1:9912415-9912434 | None:intergenic | 30.0% |
| ! | TTTGCCCTTCTTTTCAATTA+TGG | + | chr8.1:9912735-9912754 | MS.gene58726:intron | 30.0% |
| !! | ATATTCTGGCTTAAAAAGAG+AGG | + | chr8.1:9912779-9912798 | MS.gene58726:CDS | 30.0% |
| !! | CCAAAAATTGATTGGTTTGA+TGG | + | chr8.1:9912412-9912431 | MS.gene58726:intron | 30.0% |
| !! | TCTCTTTTTAAGCCAGAATA+TGG | - | chr8.1:9912780-9912799 | None:intergenic | 30.0% |
| !!! | GATTTTGTTTTGCTTCTCTT+TGG | + | chr8.1:9911978-9911997 | MS.gene58726:intron | 30.0% |
| AAAAAGAGAGGATTAATGCC+GGG | + | chr8.1:9912791-9912810 | MS.gene58726:CDS | 35.0% | |
| AAAATCTTCCTTGTGTTGCA+AGG | + | chr8.1:9912269-9912288 | MS.gene58726:CDS | 35.0% | |
| AAAGGGCAAAAAAGAAAAGC+GGG | - | chr8.1:9913234-9913253 | None:intergenic | 35.0% | |
| AATCTGATGTTGTACACCTT+AGG | + | chr8.1:9911827-9911846 | MS.gene58726:intron | 35.0% | |
| AATGCTTAAAACACTACCTC+CGG | - | chr8.1:9911698-9911717 | None:intergenic | 35.0% | |
| ACATAAAATTTGTCGCTGAC+AGG | + | chr8.1:9913127-9913146 | MS.gene58726:CDS | 35.0% | |
| ATAAAACCACAAATCAGGCA+AGG | - | chr8.1:9912168-9912187 | None:intergenic | 35.0% | |
| ATAAATTGAAGACTGAGCAG+TGG | + | chr8.1:9911804-9911823 | MS.gene58726:intron | 35.0% | |
| ATAAGTTCTTCTCCCAAGAT+TGG | + | chr8.1:9913202-9913221 | MS.gene58726:intron | 35.0% | |
| CAAAGTTGTTTGTAGCGAAT+AGG | - | chr8.1:9910776-9910795 | None:intergenic | 35.0% | |
| CTATGAATAAACTGCCAAGT+AGG | + | chr8.1:9912346-9912365 | MS.gene58726:intron | 35.0% | |
| CTATTCGCTACAAACAACTT+TGG | + | chr8.1:9910774-9910793 | MS.gene58726:CDS | 35.0% | |
| GAAAGGGCAAAAAAGAAAAG+CGG | - | chr8.1:9913235-9913254 | None:intergenic | 35.0% | |
| GCAATCGAGAATATTCATTC+TGG | + | chr8.1:9912093-9912112 | MS.gene58726:CDS | 35.0% | |
| GTGAAAGATTAGAGGATTTC+CGG | + | chr8.1:9911280-9911299 | MS.gene58726:intron | 35.0% | |
| GTGCCTAAAAATTTACAACG+TGG | + | chr8.1:9913268-9913287 | MS.gene58726:CDS | 35.0% | |
| GTTTCACATACTACTTGCTT+TGG | + | chr8.1:9911771-9911790 | MS.gene58726:intron | 35.0% | |
| TAAAACCACAAATCAGGCAA+GGG | - | chr8.1:9912167-9912186 | None:intergenic | 35.0% | |
| TCCATCAGATGTAGCAAAAA+AGG | - | chr8.1:9911627-9911646 | None:intergenic | 35.0% | |
| TTATAGTTTCCAAAAGTGGC+TGG | - | chr8.1:9911432-9911451 | None:intergenic | 35.0% | |
| ! | AAGGGATATTTTTCTCAGGA+AGG | + | chr8.1:9912621-9912640 | MS.gene58726:CDS | 35.0% |
| ! | ACTTTGGGAGATGTACAAAA+AGG | + | chr8.1:9910790-9910809 | MS.gene58726:CDS | 35.0% |
| ! | ATTTTGCTTGCATGCTATAC+AGG | + | chr8.1:9912864-9912883 | MS.gene58726:CDS | 35.0% |
| ! | GTTGAAGGGATATTTTTCTC+AGG | + | chr8.1:9912617-9912636 | MS.gene58726:CDS | 35.0% |
| ! | TACATCTGATGGAATCGTTT+TGG | + | chr8.1:9911634-9911653 | MS.gene58726:CDS | 35.0% |
| !! | CTTTTCTTTTTTGCCCTTTC+AGG | + | chr8.1:9913235-9913254 | MS.gene58726:intron | 35.0% |
| !! | GTTTTGGATGACGTTGTATA+AGG | + | chr8.1:9912915-9912934 | MS.gene58726:intron | 35.0% |
| !! | TATGTATTGGCTCATAAGCT+TGG | - | chr8.1:9913112-9913131 | None:intergenic | 35.0% |
| !!! | AACTTTTTTGAGAGAAGGGT+GGG | + | chr8.1:9913669-9913688 | MS.gene58726:CDS | 35.0% |
| !!! | CTTTGTTTTCAAGCTTGATG+AGG | + | chr8.1:9913743-9913762 | MS.gene58726:CDS | 35.0% |
| !!! | TGGAATCGTTTTGGAGAATT+TGG | + | chr8.1:9911643-9911662 | MS.gene58726:CDS | 35.0% |
| AAAACCACAAATCAGGCAAG+GGG | - | chr8.1:9912166-9912185 | None:intergenic | 40.0% | |
| AACATGATTGAGCAGAGGAA+AGG | + | chr8.1:9913644-9913663 | MS.gene58726:intron | 40.0% | |
| AATGATAAATCTCGGCGTTC+TGG | + | chr8.1:9912481-9912500 | MS.gene58726:intron | 40.0% | |
| ACGTGGAAAATCCCTTTGAT+TGG | + | chr8.1:9913285-9913304 | MS.gene58726:CDS | 40.0% | |
| CAAAGTTCTTCCCATCATCT+TGG | - | chr8.1:9913728-9913747 | None:intergenic | 40.0% | |
| CACCCTTCTCTCAAAAAAGT+TGG | - | chr8.1:9913670-9913689 | None:intergenic | 40.0% | |
| CAGATGTAGCAAAAAAGGCA+AGG | - | chr8.1:9911622-9911641 | None:intergenic | 40.0% | |
| CTCCTATGATGTACAACACT+GGG | + | chr8.1:9911556-9911575 | MS.gene58726:CDS | 40.0% | |
| GAATGATGTTCAAATTCCGG+AGG | + | chr8.1:9911679-9911698 | MS.gene58726:CDS | 40.0% | |
| GACAATGAACACGTGATGTT+TGG | + | chr8.1:9911210-9911229 | MS.gene58726:intron | 40.0% | |
| GCATGCTATACAGGTAGTAT+TGG | + | chr8.1:9912873-9912892 | MS.gene58726:intron | 40.0% | |
| GGAAAATCCCTTTGATTGGA+TGG | + | chr8.1:9913289-9913308 | MS.gene58726:CDS | 40.0% | |
| TATGCAACATGATTGAGCAG+AGG | + | chr8.1:9913639-9913658 | MS.gene58726:intron | 40.0% | |
| TCATGCCAATCAATGCACAA+GGG | - | chr8.1:9913086-9913105 | None:intergenic | 40.0% | |
| TCATTTGAGAATGTCAGACC+CGG | - | chr8.1:9912812-9912831 | None:intergenic | 40.0% | |
| TCTCCTATGATGTACAACAC+TGG | + | chr8.1:9911555-9911574 | MS.gene58726:CDS | 40.0% | |
| TGAGACAGCTAGATTTCGAA+CGG | + | chr8.1:9913001-9913020 | MS.gene58726:CDS | 40.0% | |
| TTCAAAAGACACTCTGCAGT+CGG | - | chr8.1:9911254-9911273 | None:intergenic | 40.0% | |
| TTCATGCCAATCAATGCACA+AGG | - | chr8.1:9913087-9913106 | None:intergenic | 40.0% | |
| ! | TATGAAGTGCTTCTCAGAGT+CGG | - | chr8.1:9911591-9911610 | None:intergenic | 40.0% |
| !! | AGAGATGTATAGCTTGCTGT+TGG | + | chr8.1:9912195-9912214 | MS.gene58726:intron | 40.0% |
| !! | CATGTGTTCAAGTTGTACAC+CGG | - | chr8.1:9911302-9911321 | None:intergenic | 40.0% |
| !! | GTAAATTTTTAGGCACCCCA+AGG | - | chr8.1:9913264-9913283 | None:intergenic | 40.0% |
| !! | TCGTTTTGCCTTGGTAACAT+GGG | + | chr8.1:9913175-9913194 | MS.gene58726:intron | 40.0% |
| !! | TTCGTTTTGCCTTGGTAACA+TGG | + | chr8.1:9913174-9913193 | MS.gene58726:intron | 40.0% |
| !! | TTGGCTTTGCATGTGTTGAA+GGG | + | chr8.1:9912603-9912622 | MS.gene58726:CDS | 40.0% |
| !! | TTTTGGAGAATTTGGCTGCA+AGG | + | chr8.1:9911651-9911670 | MS.gene58726:CDS | 40.0% |
| !!! | AGGCCAACTTTTTTGAGAGA+AGG | + | chr8.1:9913664-9913683 | MS.gene58726:CDS | 40.0% |
| !!! | CAACTTTTTTGAGAGAAGGG+TGG | + | chr8.1:9913668-9913687 | MS.gene58726:CDS | 40.0% |
| !!! | GCCTTTTTTGCTACATCTGA+TGG | + | chr8.1:9911623-9911642 | MS.gene58726:CDS | 40.0% |
| !!! | GGCCAACTTTTTTGAGAGAA+GGG | + | chr8.1:9913665-9913684 | MS.gene58726:CDS | 40.0% |
| AAAAGGCTGAAGCCAGTTTC+TGG | + | chr8.1:9910807-9910826 | MS.gene58726:CDS | 45.0% | |
| AAGGGTGGGTGATTATCAGA+AGG | + | chr8.1:9913683-9913702 | MS.gene58726:CDS | 45.0% | |
| AAGTCTCTCCGCAAATGAAG+TGG | - | chr8.1:9912582-9912601 | None:intergenic | 45.0% | |
| AGTTCTTCCCATCATCTTGG+AGG | - | chr8.1:9913725-9913744 | None:intergenic | 45.0% | |
| AGTTCTTCTCCCAAGATTGG+TGG | + | chr8.1:9913205-9913224 | MS.gene58726:intron | 45.0% | |
| ATACACTGGCAACACCAGAA+AGG | + | chr8.1:9912454-9912473 | MS.gene58726:intron | 45.0% | |
| ATGTCAAGCCTCCAAGATGA+TGG | + | chr8.1:9913714-9913733 | MS.gene58726:CDS | 45.0% | |
| ATTTGTCGCTGACAGGCTAT+TGG | + | chr8.1:9913134-9913153 | MS.gene58726:CDS | 45.0% | |
| CAAATTGCAACAGGCCTACT+TGG | - | chr8.1:9912363-9912382 | None:intergenic | 45.0% | |
| CATATGTGTCAGCACTTCCT+GGG | + | chr8.1:9912008-9912027 | MS.gene58726:intron | 45.0% | |
| CGGTGTACAACTTGAACACA+TGG | + | chr8.1:9911300-9911319 | MS.gene58726:intron | 45.0% | |
| CTGCAGTTCCACTTCATTTG+CGG | + | chr8.1:9912571-9912590 | MS.gene58726:intron | 45.0% | |
| GAGACAGCTAGATTTCGAAC+GGG | + | chr8.1:9913002-9913021 | MS.gene58726:CDS | 45.0% | |
| TCAGCTTCTGTGCCATATTC+TGG | + | chr8.1:9912765-9912784 | MS.gene58726:intron | 45.0% | |
| TCATATGTGTCAGCACTTCC+TGG | + | chr8.1:9912007-9912026 | MS.gene58726:intron | 45.0% | |
| TCATTTGCGGAGAGACTTGT+TGG | + | chr8.1:9912584-9912603 | MS.gene58726:CDS | 45.0% | |
| TCTTCCTTGTGTTGCAAGGA+AGG | + | chr8.1:9912273-9912292 | MS.gene58726:CDS | 45.0% | |
| TGCCCAGTGTTGTACATCAT+AGG | - | chr8.1:9911561-9911580 | None:intergenic | 45.0% | |
| TGTCAAGCCTCCAAGATGAT+GGG | + | chr8.1:9913715-9913734 | MS.gene58726:CDS | 45.0% | |
| TGTTGCAAGGAAGGCTGAAT+GGG | + | chr8.1:9912282-9912301 | MS.gene58726:CDS | 45.0% | |
| ! | AAGTTGGTTGACAGCTGAAG+AGG | + | chr8.1:9911526-9911545 | MS.gene58726:intron | 45.0% |
| ! | GAGCTAATCTCTAGAGACGA+GGG | + | chr8.1:9912830-9912849 | MS.gene58726:CDS | 45.0% |
| ! | TGAGCTAATCTCTAGAGACG+AGG | + | chr8.1:9912829-9912848 | MS.gene58726:CDS | 45.0% |
| !! | GGGCATTGAGTTGGATTAAC+AGG | + | chr8.1:9912302-9912321 | MS.gene58726:CDS | 45.0% |
| !! | GTTGGCTTTGCATGTGTTGA+AGG | + | chr8.1:9912602-9912621 | MS.gene58726:CDS | 45.0% |
| !! | TTGCCCTTTCAGGTTTCCTT+GGG | + | chr8.1:9913245-9913264 | MS.gene58726:intron | 45.0% |
| !! | TTTCCAAAAGTGGCTGGCTT+TGG | - | chr8.1:9911426-9911445 | None:intergenic | 45.0% |
| !! | TTTGCCCTTTCAGGTTTCCT+TGG | + | chr8.1:9913244-9913263 | MS.gene58726:intron | 45.0% |
| !!! | CTGGTGTTGCCAGTGTATTT+TGG | - | chr8.1:9912452-9912471 | None:intergenic | 45.0% |
| AAGCGGGTAACCACCAATCT+TGG | - | chr8.1:9913218-9913237 | None:intergenic | 50.0% | |
| AGCGGGTAACCACCAATCTT+GGG | - | chr8.1:9913217-9913236 | None:intergenic | 50.0% | |
| CACCCCAAGGAAACCTGAAA+GGG | - | chr8.1:9913251-9913270 | None:intergenic | 50.0% | |
| CTGTCTCAGTAACAAGCTGC+AGG | - | chr8.1:9912989-9913008 | None:intergenic | 50.0% | |
| GCCAATCAATGCACAAGGGA+GGG | - | chr8.1:9913082-9913101 | None:intergenic | 50.0% | |
| GTGTTGCAAGGAAGGCTGAA+TGG | + | chr8.1:9912281-9912300 | MS.gene58726:CDS | 50.0% | |
| TCAGCCTTCCTTGCAACACA+AGG | - | chr8.1:9912280-9912299 | None:intergenic | 50.0% | |
| TGATAGGCTCGGGCATTCTA+TGG | + | chr8.1:9912060-9912079 | MS.gene58726:intron | 50.0% | |
| TGCCAATCAATGCACAAGGG+AGG | - | chr8.1:9913083-9913102 | None:intergenic | 50.0% | |
| ! | GTATGTACCGGTCCAGAAAC+TGG | - | chr8.1:9910822-9910841 | None:intergenic | 50.0% |
| ! | TTCTCCCCTTGCCTGATTTG+TGG | + | chr8.1:9912159-9912178 | MS.gene58726:intron | 50.0% |
| !! | AGGCTGAATGGGCATTGAGT+TGG | + | chr8.1:9912293-9912312 | MS.gene58726:CDS | 50.0% |
| !! | GAGGGCATCACAGACAAACT+CGG | - | chr8.1:9913064-9913083 | None:intergenic | 50.0% |
| !! | TGCCCTTTCAGGTTTCCTTG+GGG | + | chr8.1:9913246-9913265 | MS.gene58726:intron | 50.0% |
| !! | TTGCCAAAGCCAGCCACTTT+TGG | + | chr8.1:9911420-9911439 | MS.gene58726:intron | 50.0% |
| !!! | GTTGCCAGTGTATTTTGGCC+TGG | - | chr8.1:9912447-9912466 | None:intergenic | 50.0% |
| CCTGCCAGGCCAAAATACAC+TGG | + | chr8.1:9912440-9912459 | MS.gene58726:intron | 55.0% | |
| GCACCCCAAGGAAACCTGAA+AGG | - | chr8.1:9913252-9913271 | None:intergenic | 55.0% | |
| GTGCTTCTCAGAGTCGGACA+AGG | - | chr8.1:9911585-9911604 | None:intergenic | 55.0% | |
| ! | GCCCTCCCTTGTGCATTGAT+TGG | + | chr8.1:9913078-9913097 | MS.gene58726:CDS | 55.0% |
| ! | GCTGAAGCCAGTTTCTGGAC+CGG | + | chr8.1:9910812-9910831 | MS.gene58726:CDS | 55.0% |
| !!! | CCAGTGTATTTTGGCCTGGC+AGG | - | chr8.1:9912443-9912462 | None:intergenic | 55.0% |
| !!! | TGTATTTTGGCCTGGCAGGC+TGG | - | chr8.1:9912439-9912458 | None:intergenic | 55.0% |
| CACTCTGCAGTCGGAGACGT+AGG | - | chr8.1:9911245-9911264 | None:intergenic | 60.0% | |
| ! | GTTTGATGGGCCAGCCTGCC+AGG | + | chr8.1:9912426-9912445 | MS.gene58726:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 9910743 | 9913773 | 9910743 | ID=MS.gene58726 |
| chr8.1 | mRNA | 9910743 | 9913773 | 9910743 | ID=MS.gene58726.t1;Parent=MS.gene58726 |
| chr8.1 | exon | 9910743 | 9910833 | 9910743 | ID=MS.gene58726.t1.exon1;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9910743 | 9910833 | 9910743 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9911540 | 9911700 | 9911540 | ID=MS.gene58726.t1.exon2;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9911540 | 9911700 | 9911540 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9912066 | 9912114 | 9912066 | ID=MS.gene58726.t1.exon3;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9912066 | 9912114 | 9912066 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9912197 | 9912323 | 9912197 | ID=MS.gene58726.t1.exon4;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9912197 | 9912323 | 9912197 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9912577 | 9912642 | 9912577 | ID=MS.gene58726.t1.exon5;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9912577 | 9912642 | 9912577 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9912769 | 9912885 | 9912769 | ID=MS.gene58726.t1.exon6;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9912769 | 9912885 | 9912769 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9912993 | 9913155 | 9912993 | ID=MS.gene58726.t1.exon7;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9912993 | 9913155 | 9912993 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9913257 | 9913327 | 9913257 | ID=MS.gene58726.t1.exon8;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9913257 | 9913327 | 9913257 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| chr8.1 | exon | 9913659 | 9913773 | 9913659 | ID=MS.gene58726.t1.exon9;Parent=MS.gene58726.t1 |
| chr8.1 | CDS | 9913659 | 9913773 | 9913659 | ID=cds.MS.gene58726.t1;Parent=MS.gene58726.t1 |
| Gene Sequence |
| Protein sequence |
