Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58848.t1 | XP_003624952.1 | 87.5 | 591 | 4 | 2 | 1 | 521 | 1 | 591 | 1.00E-262 | 915.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58848.t1 | Q67UL3 | 59.9 | 609 | 139 | 11 | 1 | 521 | 1 | 592 | 2.1e-163 | 577.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58848.t1 | Q673E5 | 87.5 | 591 | 4 | 2 | 1 | 521 | 1 | 591 | 7.5e-263 | 915.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene58848 | -0.823316 | 1.48E-53 | -1.69E-46 |
| MS.gene050790 | MS.gene58848 | 0.824496 | 7.82E-54 | -1.69E-46 |
| MS.gene050904 | MS.gene58848 | -0.845542 | 3.81E-59 | -1.69E-46 |
| MS.gene051317 | MS.gene58848 | -0.815852 | 7.48E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene58848 | -0.809866 | 1.53E-50 | -1.69E-46 |
| MS.gene054851 | MS.gene58848 | 0.874389 | 7.02E-68 | -1.69E-46 |
| MS.gene054999 | MS.gene58848 | 0.831666 | 1.47E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene58848 | -0.812516 | 4.08E-51 | -1.69E-46 |
| MS.gene055982 | MS.gene58848 | 0.805572 | 1.25E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene58848 | -0.807382 | 5.19E-50 | -1.69E-46 |
| MS.gene056618 | MS.gene58848 | 0.844302 | 8.22E-59 | -1.69E-46 |
| MS.gene057367 | MS.gene58848 | 0.823993 | 1.03E-53 | -1.69E-46 |
| MS.gene058853 | MS.gene58848 | 0.800733 | 1.25E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene58848 | -0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene58848 | 0.815136 | 1.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58848.t1 | MTR_7g089360 | 86.464 | 591 | 10 | 5 | 1 | 521 | 1 | 591 | 0.0 | 990 |
| MS.gene58848.t1 | MTR_7g089360 | 84.974 | 579 | 17 | 5 | 1 | 509 | 1 | 579 | 0.0 | 952 |
| MS.gene58848.t1 | MTR_6g069510 | 56.171 | 632 | 138 | 12 | 1 | 521 | 1 | 604 | 0.0 | 636 |
| MS.gene58848.t1 | MTR_4g084870 | 52.142 | 677 | 150 | 13 | 1 | 521 | 1 | 659 | 0.0 | 583 |
| MS.gene58848.t1 | MTR_1g030890 | 55.452 | 642 | 144 | 19 | 1 | 521 | 1 | 621 | 0.0 | 572 |
| MS.gene58848.t1 | MTR_4g127100 | 52.298 | 631 | 185 | 12 | 1 | 521 | 1 | 625 | 0.0 | 563 |
| MS.gene58848.t1 | MTR_8g107360 | 54.483 | 580 | 149 | 16 | 1 | 521 | 1 | 524 | 0.0 | 530 |
| MS.gene58848.t1 | MTR_4g127090 | 47.446 | 607 | 193 | 11 | 1 | 521 | 1 | 567 | 1.89e-164 | 478 |
| MS.gene58848.t1 | MTR_4g127100 | 47.191 | 534 | 166 | 12 | 1 | 424 | 1 | 528 | 1.02e-132 | 396 |
| MS.gene58848.t1 | MTR_1g030890 | 47.048 | 542 | 147 | 20 | 1 | 422 | 1 | 522 | 1.53e-116 | 354 |
| MS.gene58848.t1 | MTR_1g029190 | 41.709 | 585 | 219 | 19 | 1 | 521 | 1 | 527 | 4.15e-108 | 332 |
| MS.gene58848.t1 | MTR_2g038470 | 35.675 | 541 | 296 | 9 | 1 | 521 | 1 | 509 | 8.56e-105 | 323 |
| MS.gene58848.t1 | MTR_6g011400 | 55.729 | 192 | 76 | 3 | 333 | 521 | 176 | 361 | 1.35e-61 | 206 |
| MS.gene58848.t1 | MTR_6g011400 | 55.263 | 114 | 50 | 1 | 1 | 113 | 1 | 114 | 1.82e-32 | 128 |
| MS.gene58848.t1 | MTR_7g009370 | 62.658 | 158 | 59 | 0 | 364 | 521 | 200 | 357 | 1.84e-60 | 203 |
| MS.gene58848.t1 | MTR_7g009370 | 55.000 | 100 | 45 | 0 | 1 | 100 | 1 | 100 | 6.30e-29 | 117 |
| MS.gene58848.t1 | MTR_7g079720 | 49.438 | 178 | 85 | 1 | 342 | 519 | 187 | 359 | 1.17e-54 | 188 |
| MS.gene58848.t1 | MTR_7g079720 | 50.000 | 100 | 50 | 0 | 1 | 100 | 1 | 100 | 1.79e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58848.t1 | AT1G73590 | 55.694 | 641 | 145 | 15 | 1 | 521 | 1 | 622 | 0.0 | 598 |
| MS.gene58848.t1 | AT1G23080 | 55.167 | 629 | 164 | 16 | 1 | 521 | 1 | 619 | 0.0 | 578 |
| MS.gene58848.t1 | AT1G23080 | 55.040 | 625 | 167 | 15 | 1 | 521 | 1 | 615 | 0.0 | 575 |
| MS.gene58848.t1 | AT1G23080 | 55.040 | 625 | 167 | 15 | 1 | 521 | 1 | 615 | 0.0 | 575 |
| MS.gene58848.t1 | AT1G70940 | 52.527 | 653 | 165 | 15 | 1 | 521 | 1 | 640 | 0.0 | 568 |
| MS.gene58848.t1 | AT5G57090 | 51.608 | 653 | 178 | 15 | 1 | 521 | 1 | 647 | 0.0 | 565 |
| MS.gene58848.t1 | AT2G01420 | 51.805 | 637 | 166 | 14 | 1 | 521 | 1 | 612 | 0.0 | 558 |
| MS.gene58848.t1 | AT2G01420 | 51.482 | 641 | 166 | 14 | 1 | 521 | 1 | 616 | 0.0 | 558 |
| MS.gene58848.t1 | AT5G57090 | 52.811 | 498 | 152 | 13 | 101 | 521 | 56 | 547 | 1.81e-147 | 434 |
| MS.gene58848.t1 | AT1G23080 | 49.620 | 526 | 151 | 15 | 1 | 422 | 1 | 516 | 1.40e-140 | 416 |
| MS.gene58848.t1 | AT1G77110 | 39.052 | 612 | 240 | 14 | 1 | 521 | 1 | 570 | 2.74e-117 | 357 |
| MS.gene58848.t1 | AT2G01420 | 42.620 | 542 | 166 | 15 | 1 | 422 | 1 | 517 | 4.94e-114 | 347 |
| MS.gene58848.t1 | AT1G77110 | 38.136 | 590 | 232 | 14 | 1 | 499 | 1 | 548 | 3.45e-105 | 326 |
| MS.gene58848.t1 | AT5G15100 | 61.446 | 166 | 60 | 2 | 358 | 521 | 204 | 367 | 1.46e-59 | 201 |
| MS.gene58848.t1 | AT5G15100 | 56.962 | 79 | 34 | 0 | 1 | 79 | 1 | 79 | 1.29e-22 | 100 |
| MS.gene58848.t1 | AT5G16530 | 52.000 | 150 | 72 | 0 | 367 | 516 | 195 | 344 | 3.77e-50 | 176 |
| MS.gene58848.t1 | AT5G16530 | 56.000 | 100 | 44 | 0 | 1 | 100 | 1 | 100 | 2.73e-32 | 127 |
| MS.gene58848.t1 | AT5G16530 | 49.635 | 137 | 69 | 0 | 364 | 500 | 192 | 328 | 3.76e-42 | 154 |
| MS.gene58848.t1 | AT5G16530 | 56.000 | 100 | 44 | 0 | 1 | 100 | 1 | 100 | 1.37e-32 | 127 |
Find 0 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATAAAATATACCA+AGG | - | 50879:68526-68545 | None:intergenic | 10.0% |
| !! | AGATTCATTAATGTTAAAAA+AGG | + | 50879:69011-69030 | MS.gene58848:intron | 15.0% |
| !!! | ATATTTTTTCCTTTTTTTGT+TGG | + | 50879:68055-68074 | MS.gene58848:intron | 15.0% |
| !!! | ATTAGTTTATTACATTTTGT+TGG | + | 50879:69106-69125 | MS.gene58848:CDS | 15.0% |
| !!! | ATTTATTCTATTTTATTGCA+GGG | + | 50879:69049-69068 | MS.gene58848:intron | 15.0% |
| !!! | TTAGTTTATTACATTTTGTT+GGG | + | 50879:69107-69126 | MS.gene58848:CDS | 15.0% |
| !!! | TTTTACTCATGTTTTTTAAT+TGG | + | 50879:68025-68044 | MS.gene58848:intron | 15.0% |
| !!! | TTTTTAACATTAATGAATCT+AGG | - | 50879:69011-69030 | None:intergenic | 15.0% |
| !! | AATGTTATAAACATAACCAT+AGG | - | 50879:68583-68602 | None:intergenic | 20.0% |
| !! | ACATACATTCAATAAATCAA+TGG | - | 50879:68842-68861 | None:intergenic | 20.0% |
| !! | ATGAAAAAATAGTAAACTTC+TGG | - | 50879:68810-68829 | None:intergenic | 20.0% |
| !! | ATGTAATAAACTAATGTGAT+AGG | - | 50879:69101-69120 | None:intergenic | 20.0% |
| !!! | GATTTATTCTATTTTATTGC+AGG | + | 50879:69048-69067 | MS.gene58848:intron | 20.0% |
| !!! | GTTGTTTTTGTTTGAATATA+GGG | + | 50879:67107-67126 | MS.gene58848:intron | 20.0% |
| !!! | TAATGTTTTTGGATTTTTTG+TGG | + | 50879:67819-67838 | MS.gene58848:intron | 20.0% |
| !!! | TCATACTGATTTTTATTCTA+TGG | + | 50879:67440-67459 | MS.gene58848:CDS | 20.0% |
| !!! | TGTTGTTTTTGTTTGAATAT+AGG | + | 50879:67106-67125 | MS.gene58848:intron | 20.0% |
| !!! | TGTTTAGAATATGAAGAATT+TGG | + | 50879:68080-68099 | MS.gene58848:intron | 20.0% |
| !!! | TTGTTTTTGTTTGAATATAG+GGG | + | 50879:67108-67127 | MS.gene58848:intron | 20.0% |
| !!! | TTTAAAGTAGTAATCAATAG+AGG | - | 50879:68976-68995 | None:intergenic | 20.0% |
| !!! | TTTTATTCTATGGTGAATAA+TGG | + | 50879:67450-67469 | MS.gene58848:CDS | 20.0% |
| ! | AAACAACCAAATACTACTAA+TGG | - | 50879:67985-68004 | None:intergenic | 25.0% |
| ! | AACAACTATTTGAACCATAA+GGG | - | 50879:67058-67077 | None:intergenic | 25.0% |
| ! | AACATTAACCAAAAGTCAAA+AGG | - | 50879:67806-67825 | None:intergenic | 25.0% |
| ! | ACATTAACCAAAAGTCAAAA+GGG | - | 50879:67805-67824 | None:intergenic | 25.0% |
| ! | CATCAAAATCAATAAGCTTA+TGG | - | 50879:68557-68576 | None:intergenic | 25.0% |
| ! | CTAAACAAACCAACAAAAAA+AGG | - | 50879:68067-68086 | None:intergenic | 25.0% |
| ! | GAGACAAAAAATAACTCATT+AGG | - | 50879:67892-67911 | None:intergenic | 25.0% |
| ! | TATGGAAATGATCAACTTAA+TGG | + | 50879:67735-67754 | MS.gene58848:intron | 25.0% |
| ! | TTAGAAAATCAACTAGTTCA+AGG | + | 50879:67280-67299 | MS.gene58848:CDS | 25.0% |
| ! | TTGTTCTTCAATGTATCATT+TGG | + | 50879:67073-67092 | MS.gene58848:intron | 25.0% |
| ! | TTTATTGCAGGGTTATATTT+GGG | + | 50879:69060-69079 | MS.gene58848:intron | 25.0% |
| !! | GTCAAAAAACAAAACCTTTT+TGG | - | 50879:67770-67789 | None:intergenic | 25.0% |
| !! | TTTTATTGCAGGGTTATATT+TGG | + | 50879:69059-69078 | MS.gene58848:intron | 25.0% |
| !! | TTTTTGGATTTTTTGTGGTT+TGG | + | 50879:67824-67843 | MS.gene58848:intron | 25.0% |
| !!! | AAACTTCTGGTTTTGTTTAT+TGG | - | 50879:68797-68816 | None:intergenic | 25.0% |
| !!! | AATCTTTCATATTGTTTTGC+AGG | + | 50879:68420-68439 | MS.gene58848:intron | 25.0% |
| !!! | ATTGATTTTGATGTTTCCTA+TGG | + | 50879:68564-68583 | MS.gene58848:intron | 25.0% |
| !!! | TGACTTTTGGTTAATGTTTT+TGG | + | 50879:67808-67827 | MS.gene58848:intron | 25.0% |
| AACCAAATACTACTAATGGA+TGG | - | 50879:67981-68000 | None:intergenic | 30.0% | |
| AACTCCAAACAAACATATGA+AGG | - | 50879:67659-67678 | None:intergenic | 30.0% | |
| AAGACCTTCATATGTTTGTT+TGG | + | 50879:67652-67671 | MS.gene58848:CDS | 30.0% | |
| AGATAGAATTGCTATAGACT+TGG | - | 50879:68474-68493 | None:intergenic | 30.0% | |
| ATAAGGCTGGAATAAGTATT+AGG | - | 50879:68314-68333 | None:intergenic | 30.0% | |
| ATCCATCCATTAGTAGTATT+TGG | + | 50879:67976-67995 | MS.gene58848:intron | 30.0% | |
| ATTGGTTATAACCTGTACAA+TGG | - | 50879:68779-68798 | None:intergenic | 30.0% | |
| CATTAACCAAAAGTCAAAAG+GGG | - | 50879:67804-67823 | None:intergenic | 30.0% | |
| CCTTTGTTAAAAGGAATGTA+TGG | + | 50879:67018-67037 | MS.gene58848:intron | 30.0% | |
| GAACAACTATTTGAACCATA+AGG | - | 50879:67059-67078 | None:intergenic | 30.0% | |
| TCAGCATTAGTCAAATTAGA+AGG | - | 50879:67366-67385 | None:intergenic | 30.0% | |
| TGATTCTGATGTTCTTTCTT+TGG | + | 50879:67194-67213 | MS.gene58848:CDS | 30.0% | |
| TTAGTCAAATTAGAAGGTCT+TGG | - | 50879:67360-67379 | None:intergenic | 30.0% | |
| TTGTCTCTACTATTAGTACT+TGG | + | 50879:67905-67924 | MS.gene58848:intron | 30.0% | |
| TTGTTCTTGACCAAATGAAA+AGG | - | 50879:66921-66940 | None:intergenic | 30.0% | |
| ! | AATACTTATTCCAGCCTTAT+TGG | + | 50879:68314-68333 | MS.gene58848:CDS | 30.0% |
| ! | ACAATCTAACTTTGGAAGTT+TGG | + | 50879:67491-67510 | MS.gene58848:CDS | 30.0% |
| ! | CAATCTAACTTTGGAAGTTT+GGG | + | 50879:67492-67511 | MS.gene58848:CDS | 30.0% |
| ! | CCATACATTCCTTTTAACAA+AGG | - | 50879:67021-67040 | None:intergenic | 30.0% |
| ! | GTTGGTAAAGTTAATGGAAA+TGG | + | 50879:67534-67553 | MS.gene58848:CDS | 30.0% |
| ! | TGTGTGTTTTGTGTATTTCT+AGG | + | 50879:68859-68878 | MS.gene58848:intron | 30.0% |
| !! | TGTTTTGTTGTGTGTTTGTA+GGG | + | 50879:68608-68627 | MS.gene58848:intron | 30.0% |
| !! | TTGTTTTGTTGTGTGTTTGT+AGG | + | 50879:68607-68626 | MS.gene58848:intron | 30.0% |
| !!! | ATTTTTTCTAGAAGGTCTCA+TGG | + | 50879:67309-67328 | MS.gene58848:CDS | 30.0% |
| !!! | GACAAGACTCATTTTGATTA+TGG | + | 50879:68265-68284 | MS.gene58848:CDS | 30.0% |
| !!! | GCTTTTTCTTCATTTGTTGT+AGG | + | 50879:68727-68746 | MS.gene58848:CDS | 30.0% |
| ACCTGTGGCTAATAAGAAAA+AGG | + | 50879:67599-67618 | MS.gene58848:CDS | 35.0% | |
| AGGATGAACATTGTATTCCT+TGG | - | 50879:68921-68940 | None:intergenic | 35.0% | |
| AGTCCTAGACAATCTAACTT+TGG | + | 50879:67483-67502 | MS.gene58848:CDS | 35.0% | |
| ATAATAGAACCAGCAGTATC+AGG | - | 50879:67162-67181 | None:intergenic | 35.0% | |
| ATAGCAATTCTATCTGATGC+TGG | + | 50879:68479-68498 | MS.gene58848:CDS | 35.0% | |
| ATGAAATGGAATGAGAGTAG+TGG | - | 50879:66820-66839 | None:intergenic | 35.0% | |
| ATGGGCATTCCTTTGTTAAA+AGG | + | 50879:67009-67028 | MS.gene58848:intron | 35.0% | |
| ATTCCTTGGCAAACACAAAA+GGG | - | 50879:68907-68926 | None:intergenic | 35.0% | |
| CCTGTGGCTAATAAGAAAAA+GGG | + | 50879:67600-67619 | MS.gene58848:CDS | 35.0% | |
| CTTCCAAAGTTAGATTGTCT+AGG | - | 50879:67489-67508 | None:intergenic | 35.0% | |
| GGAAATAGAACTGTTGCTAA+TGG | + | 50879:68122-68141 | MS.gene58848:CDS | 35.0% | |
| GGTAAAGTTAATGGAAATGG+TGG | + | 50879:67537-67556 | MS.gene58848:CDS | 35.0% | |
| TATTCCTTGGCAAACACAAA+AGG | - | 50879:68908-68927 | None:intergenic | 35.0% | |
| TCTGATGTTCTTTCTTTGGA+TGG | + | 50879:67198-67217 | MS.gene58848:CDS | 35.0% | |
| TGAATTAGCATGGCTTAAGT+GGG | + | 50879:67932-67951 | MS.gene58848:intron | 35.0% | |
| TGATTAAAACTAGACCCTCT+TGG | - | 50879:67423-67442 | None:intergenic | 35.0% | |
| TGGTGTGGAGAAAATTGATT+AGG | + | 50879:68285-68304 | MS.gene58848:CDS | 35.0% | |
| TTGAATTAGCATGGCTTAAG+TGG | + | 50879:67931-67950 | MS.gene58848:intron | 35.0% | |
| TTGCCTATGGTTCAGTAAAA+TGG | + | 50879:66731-66750 | MS.gene58848:CDS | 35.0% | |
| TTTATGCCTGAACATTGATC+TGG | - | 50879:66772-66791 | None:intergenic | 35.0% | |
| TTTCCACAAGCAATAATCCT+TGG | - | 50879:68652-68671 | None:intergenic | 35.0% | |
| ! | ACTTCCTAACACACTTGTTA+TGG | + | 50879:66990-67009 | MS.gene58848:intron | 35.0% |
| ! | ACTTGGTAGTTGAATTAGCA+TGG | + | 50879:67922-67941 | MS.gene58848:intron | 35.0% |
| ! | ATTTTACTGAACCATAGGCA+AGG | - | 50879:66732-66751 | None:intergenic | 35.0% |
| ! | GATTGTTGGTTGAGATGAAA+TGG | - | 50879:66834-66853 | None:intergenic | 35.0% |
| ! | GTTAATGGAAATGGTGGAAA+TGG | + | 50879:67543-67562 | MS.gene58848:CDS | 35.0% |
| ! | TCCTAACACTCCTTTTCATT+TGG | + | 50879:66908-66927 | MS.gene58848:CDS | 35.0% |
| !! | ACCAAATGAAAAGGAGTGTT+AGG | - | 50879:66912-66931 | None:intergenic | 35.0% |
| !! | AGTGGTGTTGGTAAAGTTAA+TGG | + | 50879:67528-67547 | MS.gene58848:CDS | 35.0% |
| !! | CTGCAAAAAGTGCTACAAAA+CGG | - | 50879:66795-66814 | None:intergenic | 35.0% |
| !! | CTTCCTAACACACTTGTTAT+GGG | + | 50879:66991-67010 | MS.gene58848:intron | 35.0% |
| !! | CTTTCATATTGTTTTGCAGG+TGG | + | 50879:68423-68442 | MS.gene58848:intron | 35.0% |
| !! | TTCATTTGTTGTAGGACTCA+GGG | + | 50879:68735-68754 | MS.gene58848:CDS | 35.0% |
| !!! | GACTCATTTTGATTATGGTG+TGG | + | 50879:68270-68289 | MS.gene58848:CDS | 35.0% |
| !!! | GGAGTGAGATTTTTTCTAGA+AGG | + | 50879:67301-67320 | MS.gene58848:CDS | 35.0% |
| AACCTGTAGTTCATGGTGTA+AGG | - | 50879:66856-66875 | None:intergenic | 40.0% | |
| AAGAAAAAGCCATGACAGCA+GGG | - | 50879:68717-68736 | None:intergenic | 40.0% | |
| AATAAGAAAAAGGGCCATGG+TGG | + | 50879:67609-67628 | MS.gene58848:CDS | 40.0% | |
| AATGGAGTAGCTCACCAAAA+AGG | + | 50879:67753-67772 | MS.gene58848:intron | 40.0% | |
| ACAAAAGGGACTATTCCTTG+GGG | - | 50879:68893-68912 | None:intergenic | 40.0% | |
| ACACAAAAGGGACTATTCCT+TGG | - | 50879:68895-68914 | None:intergenic | 40.0% | |
| ACTTCAGCTTCAGTTTGAAG+TGG | - | 50879:67231-67250 | None:intergenic | 40.0% | |
| ATAGACTTGGCAACAATAGC+AGG | - | 50879:68461-68480 | None:intergenic | 40.0% | |
| ATCCTGACATTCTTAGCACT+GGG | + | 50879:68936-68955 | MS.gene58848:CDS | 40.0% | |
| ATCCTTACACCATGAACTAC+AGG | + | 50879:66851-66870 | MS.gene58848:CDS | 40.0% | |
| ATGCCCATAACAAGTGTGTT+AGG | - | 50879:66997-67016 | None:intergenic | 40.0% | |
| CACAAAAGGGACTATTCCTT+GGG | - | 50879:68894-68913 | None:intergenic | 40.0% | |
| CCTATGGTTCAGTAAAATGG+TGG | + | 50879:66734-66753 | MS.gene58848:CDS | 40.0% | |
| CTTCAAACTGAAGCTGAAGT+TGG | + | 50879:67231-67250 | MS.gene58848:CDS | 40.0% | |
| GAAAAAATCCCTGCACTATG+AGG | - | 50879:67579-67598 | None:intergenic | 40.0% | |
| GAATTAGCATGGCTTAAGTG+GGG | + | 50879:67933-67952 | MS.gene58848:intron | 40.0% | |
| GCTAATAAGAAAAAGGGCCA+TGG | + | 50879:67606-67625 | MS.gene58848:CDS | 40.0% | |
| GTTCATGGTGTAAGGATTGT+TGG | - | 50879:66848-66867 | None:intergenic | 40.0% | |
| TAGAACTGTTGCTAATGGTG+TGG | + | 50879:68127-68146 | MS.gene58848:CDS | 40.0% | |
| TGATGATTCTGGTACCCTTA+TGG | + | 50879:67041-67060 | MS.gene58848:intron | 40.0% | |
| TGCTATGAACCTGTAGTTCA+TGG | - | 50879:66863-66882 | None:intergenic | 40.0% | |
| TGTGTTTGTAGGGTTGTTCA+TGG | + | 50879:68618-68637 | MS.gene58848:intron | 40.0% | |
| TTCACACCAGATCAATGTTC+AGG | + | 50879:66763-66782 | MS.gene58848:CDS | 40.0% | |
| ! | AGTCTTGTCATAACACTAGC+AGG | - | 50879:68254-68273 | None:intergenic | 40.0% |
| ! | CCACCATTTTACTGAACCAT+AGG | - | 50879:66737-66756 | None:intergenic | 40.0% |
| ! | CCCTTTTTCTTATTAGCCAC+AGG | - | 50879:67603-67622 | None:intergenic | 40.0% |
| ! | GGAATGTATGGTGATGATTC+TGG | + | 50879:67030-67049 | MS.gene58848:intron | 40.0% |
| ! | GGTCATGATGAGTTTAGCTT+TGG | + | 50879:68101-68120 | MS.gene58848:CDS | 40.0% |
| ! | TTTAGAGGTGGTGGTGATTA+TGG | + | 50879:67717-67736 | MS.gene58848:intron | 40.0% |
| !! | CTTCATTTGTTGTAGGACTC+AGG | + | 50879:68734-68753 | MS.gene58848:CDS | 40.0% |
| !! | TCATTTGTTGTAGGACTCAG+GGG | + | 50879:68736-68755 | MS.gene58848:CDS | 40.0% |
| !! | TGTTTGAATATAGGGGTGCT+AGG | + | 50879:67115-67134 | MS.gene58848:intron | 40.0% |
| !!! | GATTTGCCCCTTTTGACTTT+TGG | + | 50879:67795-67814 | MS.gene58848:intron | 40.0% |
| AACCCAGTGCTAAGAATGTC+AGG | - | 50879:68941-68960 | None:intergenic | 45.0% | |
| ACTGAGCTTCATCCTAAAGC+TGG | + | 50879:68194-68213 | MS.gene58848:CDS | 45.0% | |
| AGGATCATCGCTACATAGAG+TGG | - | 50879:66712-66731 | None:intergenic | 45.0% | |
| AGTTGAGCTTGAACCAAGCT+TGG | - | 50879:68174-68193 | None:intergenic | 45.0% | |
| CAGCCAAGGATTATTGCTTG+TGG | + | 50879:68646-68665 | MS.gene58848:CDS | 45.0% | |
| CATCCTAAAGCTGGATCTCA+AGG | + | 50879:68203-68222 | MS.gene58848:CDS | 45.0% | |
| CATCCTGACATTCTTAGCAC+TGG | + | 50879:68935-68954 | MS.gene58848:CDS | 45.0% | |
| CTAGAAACCCTACACCAAGA+GGG | + | 50879:67406-67425 | MS.gene58848:CDS | 45.0% | |
| CTTGTCATAACACTAGCAGG+TGG | - | 50879:68251-68270 | None:intergenic | 45.0% | |
| GAACAGTTTCCTGATACTGC+TGG | + | 50879:67150-67169 | MS.gene58848:CDS | 45.0% | |
| GAAGAAAAAGCCATGACAGC+AGG | - | 50879:68718-68737 | None:intergenic | 45.0% | |
| GAGACCAAGTGAGACCAATA+AGG | - | 50879:68331-68350 | None:intergenic | 45.0% | |
| GCTAATGGTGTGGACAAAGA+AGG | + | 50879:68137-68156 | MS.gene58848:CDS | 45.0% | |
| GCTCAAGAGGGTCATTAGAA+TGG | + | 50879:66941-66960 | MS.gene58848:CDS | 45.0% | |
| GGAATGGCTATGTTTAGCCT+TGG | + | 50879:68506-68525 | MS.gene58848:CDS | 45.0% | |
| GGCTAAACATAGCCATTCCA+AGG | - | 50879:68505-68524 | None:intergenic | 45.0% | |
| GGTCAAGAACAAGCTCAAGA+GGG | + | 50879:66929-66948 | MS.gene58848:CDS | 45.0% | |
| GGTGGAATCCATGTCTTTAG+AGG | + | 50879:67702-67721 | MS.gene58848:CDS | 45.0% | |
| GTTGCACATTGCCATTGTAC+AGG | + | 50879:68765-68784 | MS.gene58848:CDS | 45.0% | |
| TCACCTTGAGATCCAGCTTT+AGG | - | 50879:68209-68228 | None:intergenic | 45.0% | |
| TCTAGAAACCCTACACCAAG+AGG | + | 50879:67405-67424 | MS.gene58848:CDS | 45.0% | |
| TGGATTCCACCTTCAGAAAC+AGG | - | 50879:67693-67712 | None:intergenic | 45.0% | |
| TGGTCAAGAACAAGCTCAAG+AGG | + | 50879:66928-66947 | MS.gene58848:CDS | 45.0% | |
| TTTGACGAGGAAAGTGGTGT+TGG | + | 50879:67516-67535 | MS.gene58848:CDS | 45.0% | |
| ! | AAACTAGACCCTCTTGGTGT+AGG | - | 50879:67417-67436 | None:intergenic | 45.0% |
| ! | AACTAGACCCTCTTGGTGTA+GGG | - | 50879:67416-67435 | None:intergenic | 45.0% |
| ! | AGGTCTCATGGTGTTAACTC+TGG | + | 50879:67321-67340 | MS.gene58848:CDS | 45.0% |
| ! | AGTCCCTTTTGTGTTTGCCA+AGG | + | 50879:68901-68920 | MS.gene58848:CDS | 45.0% |
| ! | ATCCATGTCTTTAGAGGTGG+TGG | + | 50879:67708-67727 | MS.gene58848:CDS | 45.0% |
| ! | ATTCTATCTGATGCTGGCCT+TGG | + | 50879:68485-68504 | MS.gene58848:CDS | 45.0% |
| ! | GGAATCCATGTCTTTAGAGG+TGG | + | 50879:67705-67724 | MS.gene58848:CDS | 45.0% |
| ! | TATTGGTCTCACTTGGTCTC+TGG | + | 50879:68331-68350 | MS.gene58848:CDS | 45.0% |
| !! | AGGGGTGCTAGGATTCTTAT+TGG | + | 50879:67126-67145 | MS.gene58848:intron | 45.0% |
| !! | AGTGCTTCACCTGTTTCTGA+AGG | + | 50879:67681-67700 | MS.gene58848:CDS | 45.0% |
| !! | GAAGCTGAAGTTGGTGAAGA+TGG | + | 50879:67240-67259 | MS.gene58848:CDS | 45.0% |
| !! | TGGAAGTTTGGGTTTTGACG+AGG | + | 50879:67503-67522 | MS.gene58848:CDS | 45.0% |
| !! | TTGGGTTTTGACGAGGAAAG+TGG | + | 50879:67510-67529 | MS.gene58848:CDS | 45.0% |
| !!! | TGCAGGGATTTTTTCACCTG+TGG | + | 50879:67584-67603 | MS.gene58848:CDS | 45.0% |
| AAGAAAAAGGGCCATGGTGG+TGG | + | 50879:67612-67631 | MS.gene58848:CDS | 50.0% | |
| AGAGTGGTACTACTGCAGTG+AGG | - | 50879:66696-66715 | None:intergenic | 50.0% | |
| CCAAGTGAGACCAATAAGGC+TGG | - | 50879:68327-68346 | None:intergenic | 50.0% | |
| CTAGCAGGTGGCATGTTTGT+TGG | - | 50879:68239-68258 | None:intergenic | 50.0% | |
| CTTGGTCTCTGGTCTCATTC+AGG | + | 50879:68342-68361 | MS.gene58848:CDS | 50.0% | |
| GAACCAAGCTTGGATAGCAC+TGG | - | 50879:68164-68183 | None:intergenic | 50.0% | |
| GTACTACTGCAGTGAGGACA+TGG | - | 50879:66690-66709 | None:intergenic | 50.0% | |
| GTAGCGATGATCCTTGCCTA+TGG | + | 50879:66718-66737 | MS.gene58848:CDS | 50.0% | |
| TGTTCATGGCATTGCAGCCA+AGG | + | 50879:68632-68651 | MS.gene58848:CDS | 50.0% | |
| ! | CACCACCACCTCTAAAGACA+TGG | - | 50879:67713-67732 | None:intergenic | 50.0% |
| !! | ATCTGATGCTGGCCTTGGAA+TGG | + | 50879:68490-68509 | MS.gene58848:CDS | 50.0% |
| !! | CCAGCCTTATTGGTCTCACT+TGG | + | 50879:68324-68343 | MS.gene58848:CDS | 50.0% |
| !! | GCTTCACCTGTTTCTGAAGG+TGG | + | 50879:67684-67703 | MS.gene58848:CDS | 50.0% |
| AAAAGCCATGACAGCAGGGC+CGG | - | 50879:68713-68732 | None:intergenic | 55.0% | |
| ACCCTGCTCCTCATAGTGCA+GGG | + | 50879:67568-67587 | MS.gene58848:CDS | 55.0% | |
| ATCCCTGCACTATGAGGAGC+AGG | - | 50879:67573-67592 | None:intergenic | 55.0% | |
| ATGGCGGTTCGCTTCCTTAC+CGG | + | 50879:68691-68710 | MS.gene58848:CDS | 55.0% | |
| CACCGTTGCTTCTTTCGCGA+TGG | + | 50879:68672-68691 | MS.gene58848:CDS | 55.0% | |
| CGCCATCGCGAAAGAAGCAA+CGG | - | 50879:68677-68696 | None:intergenic | 55.0% | |
| CGTTGCTTCTTTCGCGATGG+CGG | + | 50879:68675-68694 | MS.gene58848:CDS | 55.0% | |
| GGACCAGTGCTATCCAAGCT+TGG | + | 50879:68158-68177 | MS.gene58848:CDS | 55.0% | |
| TACCCTGCTCCTCATAGTGC+AGG | + | 50879:67567-67586 | MS.gene58848:CDS | 55.0% | |
| TCCCTGCACTATGAGGAGCA+GGG | - | 50879:67572-67591 | None:intergenic | 55.0% | |
| TTCTAGGCTGCTCTTCCCCA+AGG | + | 50879:68875-68894 | MS.gene58848:intron | 55.0% | |
| CATCACCAGCACCACCACCA+TGG | - | 50879:67626-67645 | None:intergenic | 60.0% | |
| !! | CATGGTGGTGGTGCTGGTGA+TGG | + | 50879:67624-67643 | MS.gene58848:CDS | 60.0% |
| CCATGACAGCAGGGCCGGTA+AGG | - | 50879:68708-68727 | None:intergenic | 65.0% | |
| CCTTACCGGCCCTGCTGTCA+TGG | + | 50879:68705-68724 | MS.gene58848:CDS | 65.0% | |
| !! | AAGGGCCATGGTGGTGGTGC+TGG | + | 50879:67618-67637 | MS.gene58848:CDS | 65.0% |
| !! | GGTGGTGGTGCTGGTGATGG+TGG | + | 50879:67627-67646 | MS.gene58848:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50879 | gene | 66664 | 69136 | 66664 | ID=MS.gene58848 |
| 50879 | mRNA | 66664 | 69136 | 66664 | ID=MS.gene58848.t1;Parent=MS.gene58848 |
| 50879 | exon | 66664 | 66962 | 66664 | ID=MS.gene58848.t1.exon1;Parent=MS.gene58848.t1 |
| 50879 | CDS | 66664 | 66962 | 66664 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 67128 | 67729 | 67128 | ID=MS.gene58848.t1.exon2;Parent=MS.gene58848.t1 |
| 50879 | CDS | 67128 | 67729 | 67128 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 68087 | 68363 | 68087 | ID=MS.gene58848.t1.exon3;Parent=MS.gene58848.t1 |
| 50879 | CDS | 68087 | 68363 | 68087 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 68442 | 68527 | 68442 | ID=MS.gene58848.t1.exon4;Parent=MS.gene58848.t1 |
| 50879 | CDS | 68442 | 68527 | 68442 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 68629 | 68786 | 68629 | ID=MS.gene58848.t1.exon5;Parent=MS.gene58848.t1 |
| 50879 | CDS | 68629 | 68786 | 68629 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 68881 | 68957 | 68881 | ID=MS.gene58848.t1.exon6;Parent=MS.gene58848.t1 |
| 50879 | CDS | 68881 | 68957 | 68881 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| 50879 | exon | 69070 | 69136 | 69070 | ID=MS.gene58848.t1.exon7;Parent=MS.gene58848.t1 |
| 50879 | CDS | 69070 | 69136 | 69070 | ID=cds.MS.gene58848.t1;Parent=MS.gene58848.t1 |
| Gene Sequence |
| Protein sequence |
