AlfalfaGEDB | MS.gene59914

M. sativa cultivar XinJiangDaYe / MS.gene59914

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59914.t1	KEH27958.1	86.8	197	3	2	1	174	39	235	1.20E-90	342.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59914.t1	Q9FV52	71.4	196	33	2	2	174	77	272	2.0e-73	276.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59914.t1	G7JY96	86.8	197	3	2	1	174	63	259	8.9e-91	342.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene59914	0.806733	7.13E-50	-1.69E-46
MS.gene050301	MS.gene59914	0.815303	9.91E-52	-1.69E-46
MS.gene050812	MS.gene59914	0.806467	8.11E-50	-1.69E-46
MS.gene051471	MS.gene59914	0.822217	2.67E-53	-1.69E-46
MS.gene051582	MS.gene59914	0.800488	1.41E-48	-1.69E-46
MS.gene053836	MS.gene59914	0.811075	8.39E-51	-1.69E-46
MS.gene053907	MS.gene59914	0.876282	1.58E-68	-1.69E-46
MS.gene053971	MS.gene59914	0.850074	2.15E-60	-1.69E-46
MS.gene054942	MS.gene59914	0.81511	1.09E-51	-1.69E-46
MS.gene055422	MS.gene59914	0.804943	1.69E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 47 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGCCTCCATTAAGGCG+TGG	0.649969	5.1:+42362321	MS.gene59914:CDS
ACATCTGAGCCTACATAAGG+AGG	0.644417	5.1:-42362387	None:intergenic
ACCGAAGAGTGCTTGGAGAA+AGG	0.543493	5.1:+42366262	MS.gene59914:CDS
ACCTGATTCACGGCAGTTAC+AGG	0.325575	5.1:+42365006	MS.gene59914:CDS
ACCTGTAACTGCCGTGAATC+AGG	0.336343	5.1:-42365007	None:intergenic
ACTTCGCAGGAACTTTGGTT+AGG	0.412046	5.1:+42362502	MS.gene59914:CDS
AGGGGTACCATCTTTGCAAA+CGG	0.547784	5.1:-42366290	None:intergenic
AGTACATCTGAGCCTACATA+AGG	0.545561	5.1:-42362390	None:intergenic
ATACTAAAGCCTCCTTATGT+AGG	0.510983	5.1:+42362378	MS.gene59914:CDS
ATAGAAAAGGGCCTCCATTA+AGG	0.411437	5.1:+42362316	MS.gene59914:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATACTAAGGAACTAAC+AGG	-	chr5.1:42365440-42365459	None:intergenic	30.0%
ACTAGGGTAAAATCATGATA+CGG	-	chr5.1:42363662-42363681	None:intergenic	30.0%
AGGAATTGAATTTCGTGTAT+GGG	-	chr5.1:42366171-42366190	None:intergenic	30.0%
ATACACAGGTGAAAACTAAT+AGG	-	chr5.1:42365842-42365861	None:intergenic	30.0%
ATCAGAATCAAATTAAGCCT+AGG	+	chr5.1:42365337-42365356	MS.gene59914:intron	30.0%
ATGTAGTGAATCCTAGTTTA+AGG	-	chr5.1:42364327-42364346	None:intergenic	30.0%
CAATGGATCATACAAGTAAT+AGG	-	chr5.1:42364616-42364635	None:intergenic	30.0%
CATGTAAGCGTTCAATTATA+AGG	-	chr5.1:42364032-42364051	None:intergenic	30.0%
CATTTAAGCATGACTATGTA+AGG	-	chr5.1:42363747-42363766	None:intergenic	30.0%
CATTTAGTGGTTTAATGTTG+AGG	+	chr5.1:42365910-42365929	MS.gene59914:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	42362287	42366348	42362287	ID=MS.gene59914
chr5.1	mRNA	42362287	42366348	42362287	ID=MS.gene59914.t1;Parent=MS.gene59914
chr5.1	exon	42362287	42362524	42362287	ID=MS.gene59914.t1.exon1;Parent=MS.gene59914.t1
chr5.1	CDS	42362287	42362524	42362287	ID=cds.MS.gene59914.t1;Parent=MS.gene59914.t1
chr5.1	exon	42364866	42365027	42364866	ID=MS.gene59914.t1.exon2;Parent=MS.gene59914.t1
chr5.1	CDS	42364866	42365027	42364866	ID=cds.MS.gene59914.t1;Parent=MS.gene59914.t1
chr5.1	exon	42365972	42366016	42365972	ID=MS.gene59914.t1.exon3;Parent=MS.gene59914.t1
chr5.1	CDS	42365972	42366016	42365972	ID=cds.MS.gene59914.t1;Parent=MS.gene59914.t1
chr5.1	exon	42366259	42366348	42366259	ID=MS.gene59914.t1.exon4;Parent=MS.gene59914.t1
chr5.1	CDS	42366259	42366348	42366259	ID=cds.MS.gene59914.t1;Parent=MS.gene59914.t1

Gene Sequence

>MS.gene59914

AGAACGTGAACTTCAGGTTGTGAAGAAGGATAGAAAAGGGCCTCCATTAAGGCGTGGAAAAGTATCGCCACGTCTACCTGTCCCTGATGATATACTAAAGCCTCCTTATGTAGGCTCAGATGTACTTCCAGAAATGGGAACTGAATATCAAATTCATGATTCTGAAGGTATAGCTAAAATGAGGGCTGCAGGTGAGCTTGCAGCACGTGTCTTGAACTTCGCAGGAACTTTGGTTAGGGTAAGTTTTCCTCCTTCTAGCATATACTTCGGGTGTGTTTGGCCTAGCTTACTTTGTGCTTCTCTTAATAATTTTTTTTTCTTCATAATTTTTTATTTTATTCATTAAATATTTCATTTAGTTTTAATGAGATTTATTTCTTTACATAAATATACTTTACACAGTCATTTATAATATGATGTTACCATAGAAAATGATCTAAATATACCAAACAACTTTTACTTTATTTATAGAAGTCTTATTTTTAGCTTTAGCTTTATTATAGCTTTTGAGAATCTTCGTAAACACGTGGAGCTTCCATAGACTTGACTTTTAAACTCATAAGAGTTTATTTAATATGTAAACTAATTCTAAAACATCCTATTAATGACATACATACATTATGTAACACCATTAACAAAATATAACTCAGCATTCTAACTCTATGGTAAAGCTAAGTTTGAAATTGAAATCTAAAGCAACAAAACAACAGTGCTGGGAAGGGTGTGAAACAGAGTACGAAATTAATTTTAAGTCATATTAAGTTGTGAAACTGGATGAATATAATTGTAAAGGAAGTTTCATATTAAATGGTGTAACTGCAAGAATAAAAAGAAAAGAATGTAATCACATGCACAAAATAAAATGTTAAATGGCAAAATTGAAAACCAATAGTGATTAGAGATTCAGATTTAAACCGTGTTGCTTTGTGCAGCAGCAAGTTCTAAGTGAAGGTCGAAACGAAAAGGGATTTGTTGCATTGCTTGCACAACACCTTACTCTACCCACTGTTGGAGATTTGTTGGTCGAAGGTTTCTGGAAAAGGAGAGGTTTTTCTTAAAGGGAACCTAGGATAAGTGTCGAAGAGTCTCAGAGGTTTTGCTCTAAGGTCTTTACTTCAGTCAAGCTTCGAACGTATCGTAAACACAATAACACACGAAACAGACAAAAGAAACATGCTTAGAACTTTAGAAGTTGTCGTTTTAGGCCTTTTTCTTACCATAGTACTCACTAACTTGTGGGTCTTAGCAATTTACCCAAATTTATCTGAGGCTACGTATGTGTGTTAACTAGATTTGTATGCGAGTTAACTAGTATATCTACCTAGACTCGTAAACTCAGACTAGTCTACAAGTTAACTAGAAAGTTTGACATCCGTATCATGATTTTACCCTAGTTTGGGGTTTCGAGGGAGGTGTTAAAACTTTGAACTCCTATTACCACTTGGATGCATTGGTTTCCTTACATAGTCATGCTTAAATGTAAACAAGGTCAATAGCAGCCCAGGGAGTGCAAAACATGCCGATGCAGAACAGTGGCTAGCCACCCCTTCATGCATCGATGCTGCACAAAATGGAGTTGTAGCCGCGTTTGCACCTACAAATCGCGTCGTATTTACTGATTGGTTTACCTGTACAAGAGCACGTATGATTTTAGGGGTTGAAAACCCTATAATCCTCATTTCGTAATTGGTTTACCGCAACAGGAGCGCGTATGATTTTAGGGGTTGAAACCCCTAAAATTCCCTTATAATTGAACGCTTACATGGGTATTTTAAGGTTTTTGTGCAGAAAAAAGTCTATTACCCTCTTCTCTTCTGCAACCAACACCCGTTCTCTCTTTTCATTTATCCTCTCTCTCTCTCTCTCTCACTCACTTTTCCATATGATGTGCCATCCGCGGCCGCTATTCTAGCCCTTTGCCAACATGTATCTTACCGTCTTTCTTCACATTCGAAAAACCATTAACTCATACTCTCTCTCAAATAGGGGCCATCTCGCGCACTATGCAATCTCAGTTTTTGCGTCGGCTGGATCGCTCCTTAAACTAGGATTCACTACATAGGAAACATGTTCAGAAGTTGTCATTTTGGGACTTTTTCTTACACCATTAGATTCACTAAATTGATATTCTATGAGAGTTTGGCCAAGTTTAATTGATTCTTCTCATGTGAGTTAAATATATTTTGTATGCAAGTTAATTAGATTTTGCTTGCTGGACACTTAAGCTCGGATGAGTGTAGGAGTCAACTAACAGGTTTGACAACCATAACATGCTTTTATTTGAGTATGGGATTTTGAGAGGTGTCAGGTTTGAAAATTTTGAACTCCTATTACTTGTATGATCCATTGATTTTCTTACGTACACGGTACAGGCAACATCAACAAAGTTTGTAATGTATGAGCATTTTTTTACTGTGAATGGTTAAGAACATAAAATCGATAATATTTGAAGCTTAATGTCCGTAACCTTGATTATATGTTATTTGATTATCCAAATGCTAAACTTTATGTTTGTTTTGGAATGATAACTTACTTGGCACCACTTTCTTGTCTGACTTGATCTTGGTTTACATTGCCAGCCTTCTGTAACAACTAATGAAATTGATAAAGCAGTGCACCAGATGATAATTGATGCTGGTGCTTATCCCTCACCCCTTGGTTATGGTGGATTTCCGAAAAGTGTATGCACATCAGTTAATGAGTGCATGTGCCATGGGATACCTGATTCACGGCAGTTACAGGTTTTATTAGCTTTGTTTTTCAATTTTTTTATCCCTTGTAAATGCATATAACTCATAATTGTTTACAATTATATGCATCTTTTGCAGAATGGTGATATATCAACATTGATGTGACAGTCTACCTGAATGTATGCTTCTCAACTCTTATTGATATTTTTAGTTGAAATTGATCCAACATTTTTTCCAACTTGGATGTTTTCTACAAATTACAGCAATATTTTGGTTGAATCTGAATATTTTCCACTGATTATTCACAAGGGATTTACTAGGATATATATAACAAAGCAAATACAAACATGTTCCCATAATATCAGAATCAAATTAAGCCTAGGTTGCTCCATAATATCATTATCCCAGCCATACTTTCATACCTAAATTTCATCCTCATTGACACCTTAACCAGTGGTCTCCTGTTAGTTCCTTAGTATAGTTACTTAGAATTAGTTGATGAAACTGTCGAAGATGTAGGATGGTGATATACATGAGCGGAATGGATGAGTAGGATATAATTAAGAGAGGTTTTTCCTTTATCTTTGTAATACAATGCCATGTTCCCATCAGTCTGTTTATGCGCAAGGAAATGAACATAAGTTCGCTTTTAGTCTGCTGAAACACCACCTGGTTAGTAAAGGAATGAGAATTCATTACCATGTTTCTCTCAAAAATTATTTGGTTATCTGTTATCAATGGATATAATTACTGATGATTTCTCTCATGCATATTATTTTTGACTGGGAATTTTATGATACTCCATGGTAGTTATTTTTTTCAAACATATCAGTTTTTTCATTCTATTTTTGACTTGTTCAAACCTATTAGTTTTCACCTGTGTATAATGAATTATTGGCACCAAGCTAGTTGCCAATATTCTGTGCTTTATGACATTTAGTGGTTTAATGTTGAGGATCAAGTAATAATGTCGCCTTCTACATTCGCTTTGTTAGGGATATCATGGAGACACGTCAAAGACTTTTTTTTGTGGGATGTCAGTGATGCAATGAAAAACCTTGTTAAGGTAAAAAATAGTCTGCTTATATGATACATTTGAAGAAAAAGAAACTTCGCTGCAATTTTTTGTTTTCTTTGTACTACAAGCTGTACTTCATTGATGACACATTACTTTATGTATTTGTATGTTTTCCCATACACGAAATTCAATTCCTCAGCAAGCATTTGTGCAATTACATGGAACATTCATTAGTCTTGAGCATATTGTTTATCCTGTTGATAGGTAACCGAAGAGTGCTTGGAGAAAGGAATAGCCGTTTGCAAAGATGGTACCCCTTTTAAGAAAATTGGAAAAAGAATCAGGTATAATTTT

Protein sequence

>MS.gene59914.t1

RTUTSGCEEGUKRASIKAWKSIATSTCPUUYTKASLCRLRCTSRNGNUISNSUFURYSUNEGCRUACSTCLELRRNFGUAFCNNUUNUUSSAPDDNUCWCLSLTPWLWWISEKCMHISUUVHVPWDTUFTAVTGISWRHVKDFFLWDVSNRRVLGERNSRLQRWYPFUENWKKNQVUF