AlfalfaGEDB | MS.gene056451

M. sativa cultivar XinJiangDaYe / MS.gene056451

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056451.t1	XP_024629673.1	100	79	0	0	2	80	26	104	1.10E-39	172.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056451.t1	A0A396GKL3	100.0	79	0	0	2	80	26	104	8.0e-40	172.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050076	MS.gene056451	0.829474	5.04E-55	-1.69E-46
MS.gene050397	MS.gene056451	0.827562	1.46E-54	-1.69E-46
MS.gene050404	MS.gene056451	0.827612	1.42E-54	-1.69E-46
MS.gene050406	MS.gene056451	0.858683	6.96E-63	-1.69E-46
MS.gene050464	MS.gene056451	0.804766	1.84E-49	-1.69E-46
MS.gene050529	MS.gene056451	0.821249	4.46E-53	-1.69E-46
MS.gene05101	MS.gene056451	0.825866	3.71E-54	-1.69E-46
MS.gene051240	MS.gene056451	0.804713	1.89E-49	-1.69E-46
MS.gene051242	MS.gene056451	0.81598	7.00E-52	-1.69E-46
MS.gene051471	MS.gene056451	0.812263	4.63E-51	-1.69E-46
MS.gene051582	MS.gene056451	0.83235	9.94E-56	-1.69E-46
MS.gene052078	MS.gene056451	0.803619	3.20E-49	-1.69E-46
MS.gene053330	MS.gene056451	0.81481	1.27E-51	-1.69E-46
MS.gene053836	MS.gene056451	0.842442	2.58E-58	-1.69E-46
MS.gene053907	MS.gene056451	0.829807	4.19E-55	-1.69E-46
MS.gene053971	MS.gene056451	0.876668	1.16E-68	-1.69E-46
MS.gene054983	MS.gene056451	0.803659	3.14E-49	-1.69E-46
MS.gene055277	MS.gene056451	0.800477	1.42E-48	-1.69E-46
MS.gene055422	MS.gene056451	0.802751	4.84E-49	-1.69E-46
MS.gene055428	MS.gene056451	0.835051	2.10E-56	-1.69E-46
MS.gene05553	MS.gene056451	0.812033	5.20E-51	-1.69E-46
MS.gene056451	MS.gene056612	0.836785	7.63E-57	-1.69E-46
MS.gene056451	MS.gene05702	0.833032	6.73E-56	-1.69E-46
MS.gene056451	MS.gene057121	0.821235	4.50E-53	-1.69E-46
MS.gene056451	MS.gene058002	0.836532	8.85E-57	-1.69E-46
MS.gene056451	MS.gene058233	0.866841	2.12E-65	-1.69E-46
MS.gene056451	MS.gene058276	0.825844	3.76E-54	-1.69E-46
MS.gene056451	MS.gene058746	0.828883	7.02E-55	-1.69E-46
MS.gene056451	MS.gene05907	0.805453	1.32E-49	-1.69E-46
MS.gene056451	MS.gene059894	0.841685	4.09E-58	-1.69E-46
MS.gene056451	MS.gene060407	0.820689	6.01E-53	-1.69E-46
MS.gene056451	MS.gene061049	0.84556	3.76E-59	-1.69E-46
MS.gene056451	MS.gene061679	0.841681	4.10E-58	-1.69E-46
MS.gene056451	MS.gene061788	0.825952	3.54E-54	-1.69E-46
MS.gene056451	MS.gene061837	-0.804225	2.39E-49	-1.69E-46
MS.gene056451	MS.gene061838	-0.801155	1.03E-48	-1.69E-46
MS.gene056451	MS.gene062252	0.809137	2.20E-50	-1.69E-46
MS.gene056451	MS.gene062356	0.807021	6.20E-50	-1.69E-46
MS.gene056451	MS.gene062853	0.818046	2.40E-52	-1.69E-46
MS.gene056451	MS.gene062882	0.808698	2.73E-50	-1.69E-46
MS.gene056451	MS.gene062883	0.808783	2.61E-50	-1.69E-46
MS.gene056451	MS.gene063114	0.824989	5.98E-54	-1.69E-46
MS.gene056451	MS.gene063196	0.811798	5.85E-51	-1.69E-46
MS.gene056451	MS.gene063426	0.808535	2.95E-50	-1.69E-46
MS.gene056451	MS.gene064919	0.874789	5.13E-68	-1.69E-46
MS.gene056451	MS.gene065042	0.824024	1.01E-53	-1.69E-46
MS.gene056451	MS.gene065133	0.861309	1.12E-63	-1.69E-46
MS.gene056451	MS.gene065137	0.838542	2.70E-57	-1.69E-46
MS.gene056451	MS.gene065138	0.835694	1.45E-56	-1.69E-46
MS.gene056451	MS.gene065389	0.820806	5.65E-53	-1.69E-46
MS.gene056451	MS.gene06691	0.818818	1.61E-52	-1.69E-46
MS.gene056451	MS.gene067594	0.80319	3.92E-49	-1.69E-46
MS.gene056451	MS.gene067596	0.802272	6.07E-49	-1.69E-46
MS.gene056451	MS.gene067599	0.800637	1.31E-48	-1.69E-46
MS.gene056451	MS.gene06821	0.804135	2.50E-49	-1.69E-46
MS.gene056451	MS.gene068589	0.809558	1.78E-50	-1.69E-46
MS.gene056451	MS.gene068905	0.803514	3.36E-49	-1.69E-46
MS.gene056451	MS.gene06900	0.823876	1.09E-53	-1.69E-46
MS.gene056451	MS.gene069559	0.805834	1.10E-49	-1.69E-46
MS.gene056451	MS.gene069859	0.818038	2.41E-52	-1.69E-46
MS.gene056451	MS.gene07014	0.812604	3.90E-51	-1.69E-46
MS.gene056451	MS.gene07016	0.844184	8.85E-59	-1.69E-46
MS.gene056451	MS.gene070283	0.814484	1.50E-51	-1.69E-46
MS.gene056451	MS.gene07055	0.854157	1.48E-61	-1.69E-46
MS.gene056451	MS.gene070694	0.816221	6.18E-52	-1.69E-46
MS.gene056451	MS.gene070697	0.806614	7.55E-50	-1.69E-46
MS.gene056451	MS.gene070879	0.814319	1.64E-51	-1.69E-46
MS.gene056451	MS.gene071148	0.837498	5.02E-57	-1.69E-46
MS.gene056451	MS.gene071529	0.811711	6.11E-51	-1.69E-46
MS.gene056451	MS.gene072888	0.805647	1.21E-49	-1.69E-46
MS.gene056451	MS.gene072900	0.85616	3.88E-62	-1.69E-46
MS.gene056451	MS.gene073317	0.805026	1.63E-49	-1.69E-46
MS.gene056451	MS.gene073438	0.813964	1.96E-51	-1.69E-46
MS.gene056451	MS.gene073723	0.839406	1.61E-57	-1.69E-46
MS.gene056451	MS.gene073926	0.800695	1.28E-48	-1.69E-46
MS.gene056451	MS.gene07431	0.809378	1.95E-50	-1.69E-46
MS.gene056451	MS.gene07862	0.827885	1.22E-54	-1.69E-46
MS.gene056451	MS.gene08041	0.802856	4.60E-49	-1.69E-46
MS.gene056451	MS.gene08664	0.812496	4.12E-51	-1.69E-46
MS.gene056451	MS.gene08665	0.817891	2.61E-52	-1.69E-46
MS.gene056451	MS.gene08674	0.818174	2.25E-52	-1.69E-46
MS.gene056451	MS.gene20612	0.833949	3.97E-56	-1.69E-46
MS.gene056451	MS.gene21271	0.806262	8.96E-50	-1.69E-46
MS.gene056451	MS.gene22251	0.80566	1.20E-49	-1.69E-46
MS.gene056451	MS.gene22411	0.801915	7.19E-49	-1.69E-46
MS.gene056451	MS.gene22504	0.841263	5.28E-58	-1.69E-46
MS.gene056451	MS.gene22505	0.852511	4.40E-61	-1.69E-46
MS.gene056451	MS.gene22764	0.820748	5.82E-53	-1.69E-46
MS.gene056451	MS.gene22943	0.82202	2.96E-53	-1.69E-46
MS.gene056451	MS.gene23002	0.801035	1.09E-48	-1.69E-46
MS.gene056451	MS.gene23088	0.846478	2.12E-59	-1.69E-46
MS.gene056451	MS.gene23147	0.82424	8.98E-54	-1.69E-46
MS.gene056451	MS.gene23261	0.80683	6.80E-50	-1.69E-46
MS.gene056451	MS.gene23566	0.803009	4.28E-49	-1.69E-46
MS.gene056451	MS.gene23912	0.814267	1.68E-51	-1.69E-46
MS.gene056451	MS.gene23923	0.821326	4.29E-53	-1.69E-46
MS.gene056451	MS.gene24226	0.816041	6.78E-52	-1.69E-46
MS.gene056451	MS.gene24247	0.822064	2.89E-53	-1.69E-46
MS.gene056451	MS.gene25171	0.836579	8.62E-57	-1.69E-46
MS.gene056451	MS.gene25829	0.80864	2.80E-50	-1.69E-46
MS.gene056451	MS.gene25988	0.828747	7.57E-55	-1.69E-46
MS.gene056451	MS.gene27009	0.815336	9.74E-52	-1.69E-46
MS.gene056451	MS.gene27272	0.80758	4.72E-50	-1.69E-46
MS.gene056451	MS.gene27725	0.833186	6.16E-56	-1.69E-46
MS.gene056451	MS.gene28067	0.824257	8.90E-54	-1.69E-46
MS.gene056451	MS.gene28113	0.81974	9.91E-53	-1.69E-46
MS.gene056451	MS.gene28311	0.805656	1.20E-49	-1.69E-46
MS.gene056451	MS.gene29250	0.820152	7.98E-53	-1.69E-46
MS.gene056451	MS.gene29381	0.807618	4.63E-50	-1.69E-46
MS.gene056451	MS.gene29515	0.812983	3.22E-51	-1.69E-46
MS.gene056451	MS.gene29751	0.810655	1.03E-50	-1.69E-46
MS.gene056451	MS.gene29790	0.806247	9.03E-50	-1.69E-46
MS.gene056451	MS.gene30520	-0.804389	2.21E-49	-1.69E-46
MS.gene056451	MS.gene30928	0.801882	7.30E-49	-1.69E-46
MS.gene056451	MS.gene31030	0.824823	6.55E-54	-1.69E-46
MS.gene056451	MS.gene31117	0.826722	2.32E-54	-1.69E-46
MS.gene056451	MS.gene31665	0.802429	5.63E-49	-1.69E-46
MS.gene056451	MS.gene31671	0.804499	2.10E-49	-1.69E-46
MS.gene056451	MS.gene33475	0.821566	3.77E-53	-1.69E-46
MS.gene056451	MS.gene33571	0.803107	4.08E-49	-1.69E-46
MS.gene056451	MS.gene35394	-0.817091	3.95E-52	-1.69E-46
MS.gene056451	MS.gene35485	0.808843	2.54E-50	-1.69E-46
MS.gene056451	MS.gene36864	0.804247	2.37E-49	-1.69E-46
MS.gene056451	MS.gene38339	0.806331	8.66E-50	-1.69E-46
MS.gene056451	MS.gene38351	0.806722	7.17E-50	-1.69E-46
MS.gene056451	MS.gene38712	0.804959	1.68E-49	-1.69E-46
MS.gene056451	MS.gene39104	0.800161	1.64E-48	-1.69E-46
MS.gene056451	MS.gene39679	0.805899	1.07E-49	-1.69E-46
MS.gene056451	MS.gene40684	0.815874	7.39E-52	-1.69E-46
MS.gene056451	MS.gene41558	0.801794	7.61E-49	-1.69E-46
MS.gene056451	MS.gene42798	0.836757	7.76E-57	-1.69E-46
MS.gene056451	MS.gene43053	-0.819049	1.42E-52	-1.69E-46
MS.gene056451	MS.gene43945	0.867271	1.55E-65	-1.69E-46
MS.gene056451	MS.gene43954	0.820231	7.65E-53	-1.69E-46
MS.gene056451	MS.gene45532	0.821786	3.35E-53	-1.69E-46
MS.gene056451	MS.gene45921	0.814777	1.30E-51	-1.69E-46
MS.gene056451	MS.gene46176	0.808653	2.79E-50	-1.69E-46
MS.gene056451	MS.gene46299	0.835357	1.76E-56	-1.69E-46
MS.gene056451	MS.gene46352	0.808983	2.37E-50	-1.69E-46
MS.gene056451	MS.gene47758	0.804036	2.62E-49	-1.69E-46
MS.gene056451	MS.gene48195	0.813635	2.32E-51	-1.69E-46
MS.gene056451	MS.gene49050	0.806072	9.82E-50	-1.69E-46
MS.gene056451	MS.gene49767	0.808173	3.53E-50	-1.69E-46
MS.gene056451	MS.gene50134	0.818008	2.45E-52	-1.69E-46
MS.gene056451	MS.gene50644	0.822027	2.95E-53	-1.69E-46
MS.gene056451	MS.gene50859	0.827464	1.54E-54	-1.69E-46
MS.gene056451	MS.gene51540	0.802917	4.47E-49	-1.69E-46
MS.gene056451	MS.gene52238	0.834687	2.60E-56	-1.69E-46
MS.gene056451	MS.gene53143	0.805851	1.09E-49	-1.69E-46
MS.gene056451	MS.gene53201	0.815034	1.14E-51	-1.69E-46
MS.gene056451	MS.gene53281	0.807297	5.42E-50	-1.69E-46
MS.gene056451	MS.gene53556	0.821849	3.24E-53	-1.69E-46
MS.gene056451	MS.gene53843	0.80018	1.63E-48	-1.69E-46
MS.gene056451	MS.gene54387	0.836645	8.29E-57	-1.69E-46
MS.gene056451	MS.gene54606	0.830212	3.34E-55	-1.69E-46
MS.gene056451	MS.gene54700	0.824906	6.26E-54	-1.69E-46
MS.gene056451	MS.gene55349	0.821693	3.52E-53	-1.69E-46
MS.gene056451	MS.gene55695	0.822826	1.92E-53	-1.69E-46
MS.gene056451	MS.gene56100	0.843378	1.45E-58	-1.69E-46
MS.gene056451	MS.gene57121	0.806617	7.54E-50	-1.69E-46
MS.gene056451	MS.gene57299	0.832152	1.11E-55	-1.69E-46
MS.gene056451	MS.gene57853	0.80674	7.10E-50	-1.69E-46
MS.gene056451	MS.gene58160	0.805277	1.44E-49	-1.69E-46
MS.gene056451	MS.gene58480	0.828025	1.13E-54	-1.69E-46
MS.gene056451	MS.gene58500	0.807638	4.58E-50	-1.69E-46
MS.gene056451	MS.gene59035	0.825709	4.04E-54	-1.69E-46
MS.gene056451	MS.gene59564	0.835813	1.35E-56	-1.69E-46
MS.gene056451	MS.gene59648	0.854138	1.50E-61	-1.69E-46
MS.gene056451	MS.gene59649	0.846015	2.83E-59	-1.69E-46
MS.gene056451	MS.gene59730	0.819535	1.10E-52	-1.69E-46
MS.gene056451	MS.gene59906	0.844999	5.34E-59	-1.69E-46
MS.gene056451	MS.gene59914	0.80927	2.06E-50	-1.69E-46
MS.gene056451	MS.gene60909	0.834776	2.46E-56	-1.69E-46
MS.gene056451	MS.gene61507	0.849698	2.74E-60	-1.69E-46
MS.gene056451	MS.gene61958	0.813742	2.19E-51	-1.69E-46
MS.gene056451	MS.gene62169	0.801165	1.02E-48	-1.69E-46
MS.gene056451	MS.gene62419	0.846703	1.84E-59	-1.69E-46
MS.gene056451	MS.gene63009	0.804009	2.65E-49	-1.69E-46
MS.gene056451	MS.gene63820	0.858076	1.06E-62	-1.69E-46
MS.gene056451	MS.gene64424	0.865137	7.34E-65	-1.69E-46
MS.gene056451	MS.gene64426	0.881271	2.76E-70	-1.69E-46
MS.gene056451	MS.gene64621	0.840916	6.52E-58	-1.69E-46
MS.gene056451	MS.gene64679	0.81153	6.69E-51	-1.69E-46
MS.gene056451	MS.gene64961	0.837211	5.94E-57	-1.69E-46
MS.gene056451	MS.gene65552	0.810049	1.40E-50	-1.69E-46
MS.gene056451	MS.gene65665	0.830787	2.41E-55	-1.69E-46
MS.gene056451	MS.gene65851	0.826423	2.74E-54	-1.69E-46
MS.gene056451	MS.gene66064	0.817212	3.71E-52	-1.69E-46
MS.gene056451	MS.gene66292	0.825826	3.79E-54	-1.69E-46
MS.gene056451	MS.gene66332	0.807989	3.86E-50	-1.69E-46
MS.gene056451	MS.gene66702	0.822016	2.97E-53	-1.69E-46
MS.gene056451	MS.gene66847	0.826157	3.16E-54	-1.69E-46
MS.gene056451	MS.gene66922	0.817221	3.69E-52	-1.69E-46
MS.gene056451	MS.gene66972	0.841092	5.86E-58	-1.69E-46
MS.gene056451	MS.gene67054	0.854601	1.10E-61	-1.69E-46
MS.gene056451	MS.gene68393	0.811477	6.87E-51	-1.69E-46
MS.gene056451	MS.gene68937	0.807631	4.60E-50	-1.69E-46
MS.gene056451	MS.gene69798	0.839948	1.17E-57	-1.69E-46
MS.gene056451	MS.gene70118	0.803439	3.49E-49	-1.69E-46
MS.gene056451	MS.gene70652	0.802363	5.81E-49	-1.69E-46
MS.gene056451	MS.gene71024	0.800497	1.40E-48	-1.69E-46
MS.gene056451	MS.gene71558	0.857452	1.62E-62	-1.69E-46
MS.gene056451	MS.gene71604	0.817083	3.96E-52	-1.69E-46
MS.gene056451	MS.gene71833	0.871015	9.42E-67	-1.69E-46
MS.gene056451	MS.gene72242	0.814771	1.30E-51	-1.69E-46
MS.gene056451	MS.gene74325	0.800473	1.42E-48	-1.69E-46
MS.gene056451	MS.gene74671	0.828536	8.52E-55	-1.69E-46
MS.gene056451	MS.gene74914	0.877525	5.86E-69	-1.69E-46
MS.gene056451	MS.gene74922	0.817194	3.74E-52	-1.69E-46
MS.gene056451	MS.gene75021	0.838078	3.56E-57	-1.69E-46
MS.gene056451	MS.gene75346	0.819782	9.69E-53	-1.69E-46
MS.gene056451	MS.gene76043	-0.809595	1.75E-50	-1.69E-46
MS.gene056451	MS.gene76302	0.83562	1.51E-56	-1.69E-46
MS.gene056451	MS.gene77660	0.835333	1.78E-56	-1.69E-46
MS.gene056451	MS.gene77877	0.831755	1.39E-55	-1.69E-46
MS.gene056451	MS.gene78129	0.838125	3.46E-57	-1.69E-46
MS.gene056451	MS.gene78778	0.872409	3.25E-67	-1.69E-46
MS.gene056451	MS.gene79179	0.803771	2.97E-49	-1.69E-46
MS.gene056451	MS.gene80157	0.804834	1.79E-49	-1.69E-46
MS.gene056451	MS.gene81435	0.855266	7.08E-62	-1.69E-46
MS.gene056451	MS.gene81436	0.81069	1.02E-50	-1.69E-46
MS.gene056451	MS.gene81680	0.814229	1.71E-51	-1.69E-46
MS.gene056451	MS.gene82364	0.800635	1.31E-48	-1.69E-46
MS.gene056451	MS.gene82572	0.811975	5.35E-51	-1.69E-46
MS.gene056451	MS.gene82769	0.852847	3.53E-61	-1.69E-46
MS.gene056451	MS.gene83053	0.832032	1.19E-55	-1.69E-46
MS.gene056451	MS.gene83563	-0.808785	2.61E-50	-1.69E-46
MS.gene056451	MS.gene84159	0.822034	2.94E-53	-1.69E-46
MS.gene056451	MS.gene84390	0.822292	2.56E-53	-1.69E-46
MS.gene056451	MS.gene85579	0.811985	5.32E-51	-1.69E-46
MS.gene056451	MS.gene86003	0.857242	1.87E-62	-1.69E-46
MS.gene056451	MS.gene86055	0.843211	1.61E-58	-1.69E-46
MS.gene056451	MS.gene86445	-0.803671	3.12E-49	-1.69E-46
MS.gene056451	MS.gene86932	0.832133	1.12E-55	-1.69E-46
MS.gene056451	MS.gene87268	0.871946	4.64E-67	-1.69E-46
MS.gene056451	MS.gene88577	0.831609	1.51E-55	-1.69E-46
MS.gene056451	MS.gene89325	0.808416	3.13E-50	-1.69E-46
MS.gene056451	MS.gene89652	0.829624	4.64E-55	-1.69E-46
MS.gene056451	MS.gene89914	0.847102	1.43E-59	-1.69E-46
MS.gene056451	MS.gene90444	0.81491	1.21E-51	-1.69E-46
MS.gene056451	MS.gene90730	0.812122	4.97E-51	-1.69E-46
MS.gene056451	MS.gene91098	0.814573	1.44E-51	-1.69E-46
MS.gene056451	MS.gene91159	0.856391	3.32E-62	-1.69E-46
MS.gene056451	MS.gene91319	0.804478	2.12E-49	-1.69E-46
MS.gene056451	MS.gene91325	0.819767	9.77E-53	-1.69E-46
MS.gene056451	MS.gene91761	0.860665	1.76E-63	-1.69E-46
MS.gene056451	MS.gene91845	0.822405	2.41E-53	-1.69E-46
MS.gene056451	MS.gene92051	0.800883	1.17E-48	-1.69E-46
MS.gene056451	MS.gene92668	0.823116	1.65E-53	-1.69E-46
MS.gene056451	MS.gene92871	0.814436	1.54E-51	-1.69E-46
MS.gene056451	MS.gene93743	0.822274	2.59E-53	-1.69E-46
MS.gene056451	MS.gene94277	0.870423	1.48E-66	-1.69E-46
MS.gene056451	MS.gene94440	0.844005	9.88E-59	-1.69E-46
MS.gene056451	MS.gene94661	0.854842	9.40E-62	-1.69E-46
MS.gene056451	MS.gene95277	0.845811	3.22E-59	-1.69E-46
MS.gene056451	MS.gene96276	0.803902	2.79E-49	-1.69E-46
MS.gene056451	MS.gene96371	0.82036	7.15E-53	-1.69E-46
MS.gene056451	MS.gene96680	0.859995	2.81E-63	-1.69E-46
MS.gene056451	MS.gene96681	0.876923	9.49E-69	-1.69E-46
MS.gene056451	MS.gene96705	0.832076	1.16E-55	-1.69E-46
MS.gene056451	MS.gene96945	0.815189	1.05E-51	-1.69E-46
MS.gene056451	MS.gene97456	0.84343	1.41E-58	-1.69E-46
MS.gene056451	MS.gene97706	0.838503	2.77E-57	-1.69E-46
MS.gene056451	MS.gene98523	0.811364	7.26E-51	-1.69E-46
MS.gene056451	MS.gene99139	0.80491	1.72E-49	-1.69E-46
MS.gene056451	MS.gene99622	0.804064	2.58E-49	-1.69E-46
MS.gene056451	MS.gene99806	0.80745	5.02E-50	-1.69E-46
MS.gene056451	MS.gene99819	0.840139	1.04E-57	-1.69E-46
MS.gene056451	MS.gene99854	0.837453	5.15E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 17 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCCACTTGTTACTCTTAC+AGG	0.198423	8.3:+32951758	MS.gene056451:CDS
CTTCTAGTGCCTTTATGCAT+TGG	0.385653	8.3:-32951721	None:intergenic
AGATCATGCATCTCTCTATC+AGG	0.411660	8.3:-32951682	None:intergenic
TTTACGTACGTGAACGAGCT+TGG	0.432955	8.3:-32951941	None:intergenic
ACAAACAAGGAAGAGGGTAT+TGG	0.476829	8.3:-32951478	None:intergenic
GAGTCAAGACCAATGCATAA+AGG	0.483045	8.3:+32951712	MS.gene056451:CDS
CGTACGTGAACGAGCTTGGA+GGG	0.493662	8.3:-32951937	None:intergenic
TCCACATAGCTATATTAGAA+TGG	0.532785	8.3:+32951508	MS.gene056451:CDS
ACGTACGTGAACGAGCTTGG+AGG	0.547000	8.3:-32951938	None:intergenic
TGACAATACAAACAAGGAAG+AGG	0.554518	8.3:-32951485	None:intergenic
AAGGCACTAGAAGAACATGC+AGG	0.583674	8.3:+32951731	MS.gene056451:CDS
AGTGTGGAGAGAGTTGCAAA+AGG	0.597912	8.3:+32951875	MS.gene056451:intron
GACAATACAAACAAGGAAGA+GGG	0.614485	8.3:-32951484	None:intergenic
AGGCACTAGAAGAACATGCA+GGG	0.629832	8.3:+32951732	MS.gene056451:CDS
ACCATTCTAATATAGCTATG+TGG	0.637830	8.3:-32951509	None:intergenic
AGACCTGTAAGAGTAACAAG+TGG	0.663372	8.3:-32951761	None:intergenic
TGTGGATGACAATACAAACA+AGG	0.679966	8.3:-32951491	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAAAAAATATTATTATTTTA+TGG	+	chr8.3:32951587-32951606	MS.gene056451:intron	0.0%
!!	TTATTATGATATTGAAAACA+AGG	-	chr8.3:32951622-32951641	None:intergenic	15.0%
!	TGAAACTTATGTTACACTTT+GGG	+	chr8.3:32951810-32951829	MS.gene056451:intron	25.0%
!	TTGAAACTTATGTTACACTT+TGG	+	chr8.3:32951809-32951828	MS.gene056451:intron	25.0%
	ACCATTCTAATATAGCTATG+TGG	-	chr8.3:32951512-32951531	None:intergenic	30.0%
	TCCACATAGCTATATTAGAA+TGG	+	chr8.3:32951508-32951527	MS.gene056451:CDS	30.0%
	TTTCATGCATGGAAAAATGT+AGG	+	chr8.3:32951652-32951671	MS.gene056451:intron	30.0%
!	TACACTTTGGGAAACATATA+TGG	+	chr8.3:32951822-32951841	MS.gene056451:intron	30.0%
!	TGTATATTCATTTTGCAGTG+TGG	+	chr8.3:32951859-32951878	MS.gene056451:intron	30.0%
!	TTTTCCATGCATGAAAGTTT+TGG	-	chr8.3:32951648-32951667	None:intergenic	30.0%
	GACAATACAAACAAGGAAGA+GGG	-	chr8.3:32951487-32951506	None:intergenic	35.0%
	TGACAATACAAACAAGGAAG+AGG	-	chr8.3:32951488-32951507	None:intergenic	35.0%
	TGCATTGTGCTTAATTCTGT+TGG	-	chr8.3:32951446-32951465	None:intergenic	35.0%
	TGTGGATGACAATACAAACA+AGG	-	chr8.3:32951494-32951513	None:intergenic	35.0%
	AGACCTGTAAGAGTAACAAG+TGG	-	chr8.3:32951764-32951783	None:intergenic	40.0%
	AGATCATGCATCTCTCTATC+AGG	-	chr8.3:32951685-32951704	None:intergenic	40.0%
	AGCTCCAAAACTTTCATGCA+TGG	+	chr8.3:32951641-32951660	MS.gene056451:intron	40.0%
	CTTCTAGTGCCTTTATGCAT+TGG	-	chr8.3:32951724-32951743	None:intergenic	40.0%
	GAGTCAAGACCAATGCATAA+AGG	+	chr8.3:32951712-32951731	MS.gene056451:CDS	40.0%
!	ACAAACAAGGAAGAGGGTAT+TGG	-	chr8.3:32951481-32951500	None:intergenic	40.0%
	AGGCACTAGAAGAACATGCA+GGG	+	chr8.3:32951732-32951751	MS.gene056451:CDS	45.0%
	AGTGTGGAGAGAGTTGCAAA+AGG	+	chr8.3:32951875-32951894	MS.gene056451:intron	45.0%
!	AAGGCACTAGAAGAACATGC+AGG	+	chr8.3:32951731-32951750	MS.gene056451:CDS	45.0%
!	CAGCCACTTGTTACTCTTAC+AGG	+	chr8.3:32951758-32951777	MS.gene056451:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	32951444	32951954	32951444	ID=MS.gene056451
chr8.3	mRNA	32951444	32951954	32951444	ID=MS.gene056451.t1;Parent=MS.gene056451
chr8.3	exon	32951444	32951529	32951444	ID=MS.gene056451.t1.exon1;Parent=MS.gene056451.t1
chr8.3	CDS	32951444	32951529	32951444	ID=cds.MS.gene056451.t1;Parent=MS.gene056451.t1
chr8.3	exon	32951674	32951779	32951674	ID=MS.gene056451.t1.exon2;Parent=MS.gene056451.t1
chr8.3	CDS	32951674	32951779	32951674	ID=cds.MS.gene056451.t1;Parent=MS.gene056451.t1
chr8.3	exon	32951877	32951954	32951877	ID=MS.gene056451.t1.exon3;Parent=MS.gene056451.t1
chr8.3	CDS	32951877	32951954	32951877	ID=cds.MS.gene056451.t1;Parent=MS.gene056451.t1

Gene Sequence

>MS.gene056451

CAACAGAATTAAGCACAATGCATGATCACACTCACCAATACCCTCTTCCTTGTTTGTATTGTCATCCACATAGCTATATTAGAATGGTAATATTAAGCTACTATATTATAATATACATGTTGAGCACTTTTTATAATTTACTTTAAAAAATATTATTATTTTATGGTATGTGTTTCCTTGTTTTCAATATCATAATAAGCTCCAAAACTTTCATGCATGGAAAAATGTAGGTTCAAAACCTGATAGAGAGATGCATGATCTTTCACATGAGTCAAGACCAATGCATAAAGGCACTAGAAGAACATGCAGGGATTCAGCCACTTGTTACTCTTACAGGTCTTTTGATTATAGTCTTTTCATTAGTCTTGAAACTTATGTTACACTTTGGGAAACATATATGGTTATGTGAATTAAATGTATATTCATTTTGCAGTGTGGAGAGAGTTGCAAAAGGAGAATGAAGAGTTCTTTAGAGCATATTTGCACAATTTATCCCTCCAAGCTCGTTCAC

Protein sequence

>MS.gene056451.t1

QQNUAQCMITLTNTLFLVCIVIHIAILEWFKTUURDAUSFTUVKTNAURHUKNMQGFSHLLLLQCGESCKRRMKSSLEHICTIYPSKLVH