Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59947.t1 | RHN63957.1 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59947.t1 | Q8GW46 | 75.8 | 165 | 34 | 2 | 8 | 172 | 5 | 163 | 8.1e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59947.t1 | A0A396IM32 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 2.5e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59947.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene59947 | 0.814774 | 1.30E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene59947 | 0.801772 | 7.69E-49 | -1.69E-46 |
| MS.gene050581 | MS.gene59947 | 0.832402 | 9.65E-56 | -1.69E-46 |
| MS.gene056611 | MS.gene59947 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene058459 | MS.gene59947 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene058903 | MS.gene59947 | 0.837601 | 4.72E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene59947 | 0.835381 | 1.73E-56 | -1.69E-46 |
| MS.gene060005 | MS.gene59947 | 0.848506 | 5.87E-60 | -1.69E-46 |
| MS.gene060799 | MS.gene59947 | 0.966232 | 1.20E-125 | -1.69E-46 |
| MS.gene060800 | MS.gene59947 | 0.958549 | 1.79E-116 | -1.69E-46 |
| MS.gene060801 | MS.gene59947 | 0.983682 | 2.05E-158 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59947.t1 | MTR_4g114730 | 95.288 | 191 | 7 | 1 | 1 | 189 | 1 | 191 | 5.41e-136 | 378 |
| MS.gene59947.t1 | MTR_2g087740 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 4.45e-60 | 186 |
| MS.gene59947.t1 | MTR_4g025900 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.64e-54 | 172 |
| MS.gene59947.t1 | MTR_4g050300 | 56.000 | 175 | 61 | 6 | 5 | 173 | 2 | 166 | 1.27e-52 | 166 |
| MS.gene59947.t1 | MTR_4g101660 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 2.31e-50 | 162 |
| MS.gene59947.t1 | MTR_5g034030 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 5.58e-45 | 148 |
| MS.gene59947.t1 | MTR_5g046230 | 41.875 | 160 | 72 | 3 | 5 | 155 | 8 | 155 | 1.10e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59947.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene59947.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene59947.t1 | AT1G08465 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.25e-56 | 175 |
| MS.gene59947.t1 | AT2G45190 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.23e-54 | 172 |
| MS.gene59947.t1 | AT4G00180 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.41e-47 | 155 |
| MS.gene59947.t1 | AT4G00180 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.75e-39 | 133 |
| MS.gene59947.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.01e-38 | 132 |
| MS.gene59947.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 2.96e-38 | 132 |
| MS.gene59947.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.29e-34 | 119 |
| MS.gene59947.t1 | AT1G69180 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 3.92e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.3:-12689331 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.3:-12689847 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.3:-12689330 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.3:+12688076 | MS.gene59947:CDS |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.3:+12688024 | MS.gene59947:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.3:-12689652 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.3:-12689988 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.3:+12689371 | MS.gene59947:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.3:+12690017 | MS.gene59947:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.3:-12689366 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.3:+12689289 | MS.gene59947:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.3:-12689651 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.3:-12689374 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.3:+12690148 | MS.gene59947:CDS |
| ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8.3:-12686929 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.3:-12689325 | None:intergenic |
| ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8.3:-12686953 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.3:+12689640 | MS.gene59947:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.3:+12688037 | MS.gene59947:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.3:+12688063 | MS.gene59947:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.3:-12689282 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.3:-12689300 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.3:+12689816 | MS.gene59947:CDS |
| CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8.3:-12686952 | None:intergenic |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.3:+12689370 | MS.gene59947:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.3:-12689672 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.3:+12689325 | MS.gene59947:CDS |
| AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8.3:+12686898 | None:intergenic |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.3:-12687987 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.3:+12689809 | MS.gene59947:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.3:-12689373 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.3:-12689287 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.3:-12688015 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.3:+12689365 | MS.gene59947:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.3:+12688005 | MS.gene59947:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.3:-12689370 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.3:-12688063 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.3:-12688060 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+AGG | - | chr8.3:12688797-12688816 | None:intergenic | 10.0% |
| !! | AGAAAAATGTATAAATAAAA+GGG | - | chr8.3:12688796-12688815 | None:intergenic | 10.0% |
| !! | TTTATATTTATATATATGCA+GGG | + | chr8.3:12689795-12689814 | MS.gene59947:intron | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | + | chr8.3:12689956-12689975 | MS.gene59947:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | + | chr8.3:12690121-12690140 | MS.gene59947:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | + | chr8.3:12689957-12689976 | MS.gene59947:intron | 10.0% |
| !!! | TTTTATATTTATATATATGC+AGG | + | chr8.3:12689794-12689813 | MS.gene59947:intron | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr8.3:12688732-12688751 | None:intergenic | 15.0% |
| !! | TAAACAAGAGAAAATTAATT+AGG | - | chr8.3:12687669-12687688 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr8.3:12688733-12688752 | None:intergenic | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | - | chr8.3:12689436-12689455 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTAATTGCAAGA+AGG | + | chr8.3:12687080-12687099 | MS.gene59947:intron | 15.0% |
| !! | AATTTAGAAAATAAACTACG+TGG | - | chr8.3:12689538-12689557 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | - | chr8.3:12689250-12689269 | None:intergenic | 20.0% |
| !! | TGTTTAAACTTAAACATACA+AGG | + | chr8.3:12687683-12687702 | MS.gene59947:intron | 20.0% |
| !!! | AGTTTTGATGATAAACATAA+TGG | + | chr8.3:12687524-12687543 | MS.gene59947:intron | 20.0% |
| !!! | ATATACTTGATAGTTTTCTT+TGG | + | chr8.3:12687124-12687143 | MS.gene59947:intron | 20.0% |
| !!! | ATATTTTAATTCTCTCTTTC+TGG | + | chr8.3:12687279-12687298 | MS.gene59947:intron | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | + | chr8.3:12689983-12690002 | MS.gene59947:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8.3:12688663-12688682 | None:intergenic | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | + | chr8.3:12689734-12689753 | MS.gene59947:intron | 20.0% |
| !!! | TATCATTTAGTGATTTGTTT+TGG | - | chr8.3:12687569-12687588 | None:intergenic | 20.0% |
| !!! | TATTTTAATTCTCTCTTTCT+GGG | + | chr8.3:12687280-12687299 | MS.gene59947:intron | 20.0% |
| ! | AAAACTCCTTATAGTTTACT+TGG | + | chr8.3:12687004-12687023 | MS.gene59947:intron | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | - | chr8.3:12688431-12688450 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | - | chr8.3:12689246-12689265 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr8.3:12688774-12688793 | None:intergenic | 25.0% |
| ! | GCTAGTTAGTAATTAATCAA+AGG | + | chr8.3:12687936-12687955 | MS.gene59947:intron | 25.0% |
| ! | TAGGAAAAGTTCATATATCT+AGG | + | chr8.3:12688558-12688577 | MS.gene59947:intron | 25.0% |
| ! | TGAATGAATTCCTTTATACT+TGG | - | chr8.3:12687192-12687211 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAAGGGAAAG+TGG | - | chr8.3:12688789-12688808 | None:intergenic | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | - | chr8.3:12688481-12688500 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | + | chr8.3:12689982-12690001 | MS.gene59947:CDS | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | - | chr8.3:12688486-12688505 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | - | chr8.3:12689570-12689589 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr8.3:12688686-12688705 | None:intergenic | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | - | chr8.3:12688415-12688434 | None:intergenic | 25.0% |
| !!! | ATTCTTTATTTTCTACCTCT+TGG | + | chr8.3:12687632-12687651 | MS.gene59947:intron | 25.0% |
| !!! | GATGTGGATTTTTTTTTTGT+GGG | + | chr8.3:12687801-12687820 | MS.gene59947:intron | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | - | chr8.3:12688418-12688437 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8.3:12688664-12688683 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr8.3:12688685-12688704 | None:intergenic | 25.0% |
| !!! | TGATGTGGATTTTTTTTTTG+TGG | + | chr8.3:12687800-12687819 | MS.gene59947:intron | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | + | chr8.3:12689257-12689276 | MS.gene59947:intron | 25.0% |
| AAAACAAGGCATATAGAGAA+AGG | + | chr8.3:12687453-12687472 | MS.gene59947:intron | 30.0% | |
| AAAATAGATCTATCCTAGCT+AGG | + | chr8.3:12688173-12688192 | MS.gene59947:intron | 30.0% | |
| AAACAAGGCATATAGAGAAA+GGG | + | chr8.3:12687454-12687473 | MS.gene59947:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | + | chr8.3:12688037-12688056 | MS.gene59947:CDS | 30.0% | |
| AATTCATTCAGATCCTGAAA+AGG | + | chr8.3:12687202-12687221 | MS.gene59947:intron | 30.0% | |
| ACAATATTGCAAAAGTTGCA+AGG | - | chr8.3:12686956-12686975 | None:intergenic | 30.0% | |
| ACAGTTCTTTCTTGTTAAGT+TGG | - | chr8.3:12689195-12689214 | None:intergenic | 30.0% | |
| ATATATATGTAGCATGCAAG+AGG | - | chr8.3:12687043-12687062 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | - | chr8.3:12689675-12689694 | None:intergenic | 30.0% | |
| CAATATTGCAAAAGTTGCAA+GGG | - | chr8.3:12686955-12686974 | None:intergenic | 30.0% | |
| CTTTCTTTCAAGCTAAAACA+AGG | + | chr8.3:12687439-12687458 | MS.gene59947:intron | 30.0% | |
| GAAAGAAAGAGAAAGAGAAA+GGG | - | chr8.3:12687428-12687447 | None:intergenic | 30.0% | |
| GTGTACATATCCAAGTATAA+AGG | + | chr8.3:12687179-12687198 | MS.gene59947:intron | 30.0% | |
| TAAAGAATAGAGAAGAAGAG+AGG | - | chr8.3:12687620-12687639 | None:intergenic | 30.0% | |
| TCAGATCCAAGTAAACTATA+AGG | - | chr8.3:12687013-12687032 | None:intergenic | 30.0% | |
| TGAAAGAAAGAGAAAGAGAA+AGG | - | chr8.3:12687429-12687448 | None:intergenic | 30.0% | |
| ! | AAAATCGAAGTATCTTGGTT+TGG | + | chr8.3:12688256-12688275 | MS.gene59947:intron | 30.0% |
| ! | ATCACATTTCACACTTGTTA+TGG | - | chr8.3:12687784-12687803 | None:intergenic | 30.0% |
| ! | ATTTGATAACCTTGATGAGA+GGG | - | chr8.3:12687379-12687398 | None:intergenic | 30.0% |
| ! | CTTTTGCAATATTGTTCTTG+CGG | + | chr8.3:12686961-12686980 | MS.gene59947:CDS | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | - | chr8.3:12689407-12689426 | None:intergenic | 30.0% |
| ! | TATTTGATAACCTTGATGAG+AGG | - | chr8.3:12687380-12687399 | None:intergenic | 30.0% |
| ! | TCTTTGAAAAAGAGTTGAGA+AGG | - | chr8.3:12687734-12687753 | None:intergenic | 30.0% |
| ! | TTGAGAAAATCGAAGTATCT+TGG | + | chr8.3:12688251-12688270 | MS.gene59947:intron | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | - | chr8.3:12689185-12689204 | None:intergenic | 30.0% |
| !! | TCACATTTCACACTTGTTAT+GGG | - | chr8.3:12687783-12687802 | None:intergenic | 30.0% |
| !! | TGATAGTTTTCTTTGGTCTT+TGG | + | chr8.3:12687131-12687150 | MS.gene59947:intron | 30.0% |
| !!! | AATCCTCATTTTTCAAGATC+AGG | + | chr8.3:12687756-12687775 | MS.gene59947:intron | 30.0% |
| AACAAGTGTGAAATGTGATG+TGG | + | chr8.3:12687785-12687804 | MS.gene59947:intron | 35.0% | |
| ACACACACACAAAAAGTCAA+CGG | - | chr8.3:12687862-12687881 | None:intergenic | 35.0% | |
| ACAGTTGTTGGTATGAATGA+AGG | - | chr8.3:12689011-12689030 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+TGG | - | chr8.3:12688650-12688669 | None:intergenic | 35.0% | |
| AGCTACAAAGCTAGTTAGTT+AGG | + | chr8.3:12688287-12688306 | MS.gene59947:intron | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | - | chr8.3:12689404-12689423 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | - | chr8.3:12689132-12689151 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | - | chr8.3:12689991-12690010 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | - | chr8.3:12687990-12688009 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | + | chr8.3:12689016-12689035 | MS.gene59947:intron | 35.0% | |
| GAAAATGGGTCAGTTATTCT+GGG | - | chr8.3:12688649-12688668 | None:intergenic | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | - | chr8.3:12689527-12689546 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | + | chr8.3:12689015-12689034 | MS.gene59947:intron | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | - | chr8.3:12688439-12688458 | None:intergenic | 35.0% | |
| TTGAAAAAGAGTTGAGAAGG+TGG | - | chr8.3:12687731-12687750 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | + | chr8.3:12688507-12688526 | MS.gene59947:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | + | chr8.3:12688508-12688527 | MS.gene59947:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | - | chr8.3:12688539-12688558 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | + | chr8.3:12689993-12690012 | MS.gene59947:CDS | 35.0% |
| !! | AAGTATCTTGGTTTGGCTTT+GGG | + | chr8.3:12688263-12688282 | MS.gene59947:intron | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | - | chr8.3:12688476-12688495 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | + | chr8.3:12688539-12688558 | MS.gene59947:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | + | chr8.3:12688985-12689004 | MS.gene59947:intron | 35.0% |
| AAAGTCATACCCTCTCATCA+AGG | + | chr8.3:12687367-12687386 | MS.gene59947:intron | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | - | chr8.3:12689376-12689395 | None:intergenic | 40.0% | |
| AATACACACACACACTCACA+TGG | + | chr8.3:12687396-12687415 | MS.gene59947:intron | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | + | chr8.3:12689289-12689308 | MS.gene59947:CDS | 40.0% | |
| ATCAAAACTAGCAAGCTCAG+TGG | - | chr8.3:12687513-12687532 | None:intergenic | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | - | chr8.3:12689303-12689322 | None:intergenic | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | - | chr8.3:12688189-12688208 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | - | chr8.3:12688521-12688540 | None:intergenic | 40.0% | |
| GACTGCAAAAGAAAAGTCCA+GGG | - | chr8.3:12687341-12687360 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | + | chr8.3:12690017-12690036 | MS.gene59947:CDS | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | - | chr8.3:12689333-12689352 | None:intergenic | 40.0% | |
| GGACCTGATCTTGAAAAATG+AGG | - | chr8.3:12687762-12687781 | None:intergenic | 40.0% | |
| TAGGTCATATAGTAGCCAAG+AGG | - | chr8.3:12687650-12687669 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | - | chr8.3:12689290-12689309 | None:intergenic | 40.0% | |
| TGACTGCAAAAGAAAAGTCC+AGG | - | chr8.3:12687342-12687361 | None:intergenic | 40.0% | |
| TGAGAAGGTGGAATGATCAA+GGG | - | chr8.3:12687719-12687738 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | - | chr8.3:12689334-12689353 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | - | chr8.3:12689003-12689022 | None:intergenic | 40.0% | |
| TTGAGAAGGTGGAATGATCA+AGG | - | chr8.3:12687720-12687739 | None:intergenic | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | - | chr8.3:12689004-12689023 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | + | chr8.3:12688189-12688208 | MS.gene59947:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | - | chr8.3:12688222-12688241 | None:intergenic | 40.0% |
| ! | CACAACATGCTTTCCTTTTC+AGG | - | chr8.3:12687218-12687237 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | - | chr8.3:12688403-12688422 | None:intergenic | 40.0% |
| !! | AGGTTGATTTGACTTGATGC+AGG | + | chr8.3:12687956-12687975 | MS.gene59947:intron | 40.0% |
| !! | AGTATCTTGGTTTGGCTTTG+GGG | + | chr8.3:12688264-12688283 | MS.gene59947:intron | 40.0% |
| !! | GAAGTATCTTGGTTTGGCTT+TGG | + | chr8.3:12688262-12688281 | MS.gene59947:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | + | chr8.3:12690148-12690167 | MS.gene59947:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | + | chr8.3:12688076-12688095 | MS.gene59947:CDS | 45.0% | |
| AGAAAGGGAGGACAAAGTGA+AGG | + | chr8.3:12687469-12687488 | MS.gene59947:intron | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | - | chr8.3:12688370-12688389 | None:intergenic | 45.0% | |
| ATGTAGCAGAGTTGTTCAGC+AGG | - | chr8.3:12686932-12686951 | None:intergenic | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | + | chr8.3:12689021-12689040 | MS.gene59947:intron | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | - | chr8.3:12689377-12689396 | None:intergenic | 45.0% | |
| CAAGGCATATAGAGAAAGGG+AGG | + | chr8.3:12687457-12687476 | MS.gene59947:intron | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | + | chr8.3:12689371-12689390 | MS.gene59947:CDS | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | - | chr8.3:12689023-12689042 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | + | chr8.3:12688005-12688024 | MS.gene59947:CDS | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | - | chr8.3:12689850-12689869 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | + | chr8.3:12689816-12689835 | MS.gene59947:CDS | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | + | chr8.3:12688024-12688043 | MS.gene59947:CDS | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | + | chr8.3:12689809-12689828 | MS.gene59947:intron | 45.0% | |
| TCTGGATCCTAACCTAGCTA+GGG | + | chr8.3:12688207-12688226 | MS.gene59947:intron | 45.0% | |
| TTCTCTCTTTCTGGGCTTGA+TGG | + | chr8.3:12687288-12687307 | MS.gene59947:intron | 45.0% | |
| TTCTGGATCCTAACCTAGCT+AGG | + | chr8.3:12688206-12688225 | MS.gene59947:intron | 45.0% | |
| ! | ATGGGTCAGTTATTCTGGGA+CGG | - | chr8.3:12688645-12688664 | None:intergenic | 45.0% |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | - | chr8.3:12688472-12688491 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | - | chr8.3:12688473-12688492 | None:intergenic | 45.0% |
| !! | TAATGATTAAAAAATTAAAT+TGG | - | chr8.3:12690065-12690084 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | - | chr8.3:12688865-12688884 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTAAATAGAT+AGG | - | chr8.3:12689445-12689464 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | + | chr8.3:12688970-12688989 | MS.gene59947:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | + | chr8.3:12689640-12689659 | MS.gene59947:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | + | chr8.3:12689365-12689384 | MS.gene59947:CDS | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | - | chr8.3:12689655-12689674 | None:intergenic | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | - | chr8.3:12688371-12688390 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | + | chr8.3:12689370-12689389 | MS.gene59947:CDS | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | + | chr8.3:12689325-12689344 | MS.gene59947:CDS | 50.0% | |
| CCAGAAACCCTAGCTAGGTT+AGG | - | chr8.3:12688217-12688236 | None:intergenic | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | - | chr8.3:12688066-12688085 | None:intergenic | 50.0% | |
| CCTAACCTAGCTAGGGTTTC+TGG | + | chr8.3:12688214-12688233 | MS.gene59947:intron | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | - | chr8.3:12689328-12689347 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | - | chr8.3:12689373-12689392 | None:intergenic | 50.0% | |
| GAGTCAAGTCTCAATCTCCC+TGG | + | chr8.3:12687321-12687340 | MS.gene59947:intron | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | - | chr8.3:12688400-12688419 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | - | chr8.3:12689369-12689388 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | - | chr8.3:12689285-12689304 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | + | chr8.3:12688359-12688378 | MS.gene59947:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | - | chr8.3:12688018-12688037 | None:intergenic | 50.0% | |
| !! | AGTACTAGCTAGGGGGTGTT+TGG | - | chr8.3:12688618-12688637 | None:intergenic | 50.0% |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | - | chr8.3:12688467-12688486 | None:intergenic | 50.0% |
| !! | GTCAGTTATTCTGGGACGGA+GGG | - | chr8.3:12688641-12688660 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | + | chr8.3:12688063-12688082 | MS.gene59947:CDS | 55.0% | |
| GGGAGGACAAAGTGAAGGTG+TGG | + | chr8.3:12687474-12687493 | MS.gene59947:intron | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | - | chr8.3:12689654-12689673 | None:intergenic | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | - | chr8.3:12688063-12688082 | None:intergenic | 55.0% | |
| !! | ACGGAGGGAGTACTAGCTAG+GGG | - | chr8.3:12688626-12688645 | None:intergenic | 55.0% |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | - | chr8.3:12688357-12688376 | None:intergenic | 55.0% |
| !! | GACGGAGGGAGTACTAGCTA+GGG | - | chr8.3:12688627-12688646 | None:intergenic | 55.0% |
| !! | GGTCAGTTATTCTGGGACGG+AGG | - | chr8.3:12688642-12688661 | None:intergenic | 55.0% |
| !! | AGGGGGTGTTTGGCTGGATG+AGG | - | chr8.3:12688608-12688627 | None:intergenic | 60.0% |
| !! | CGGAGGGAGTACTAGCTAGG+GGG | - | chr8.3:12688625-12688644 | None:intergenic | 60.0% |
| !! | CTAGCTAGGGGGTGTTTGGC+TGG | - | chr8.3:12688614-12688633 | None:intergenic | 60.0% |
| !! | GGACGGAGGGAGTACTAGCT+AGG | - | chr8.3:12688628-12688647 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | - | chr8.3:12689648-12689667 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12686902 | 12690190 | 12686902 | ID=MS.gene59947 |
| chr8.3 | mRNA | 12686902 | 12690190 | 12686902 | ID=MS.gene59947.t1;Parent=MS.gene59947 |
| chr8.3 | exon | 12686902 | 12686982 | 12686902 | ID=MS.gene59947.t1.exon1;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12686902 | 12686982 | 12686902 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12687978 | 12688097 | 12687978 | ID=MS.gene59947.t1.exon2;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12687978 | 12688097 | 12687978 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12689279 | 12689405 | 12689279 | ID=MS.gene59947.t1.exon3;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12689279 | 12689405 | 12689279 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12689649 | 12689697 | 12689649 | ID=MS.gene59947.t1.exon4;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12689649 | 12689697 | 12689649 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12689816 | 12689891 | 12689816 | ID=MS.gene59947.t1.exon5;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12689816 | 12689891 | 12689816 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12689976 | 12690044 | 12689976 | ID=MS.gene59947.t1.exon6;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12689976 | 12690044 | 12689976 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| chr8.3 | exon | 12690143 | 12690190 | 12690143 | ID=MS.gene59947.t1.exon7;Parent=MS.gene59947.t1 |
| chr8.3 | CDS | 12690143 | 12690190 | 12690143 | ID=cds.MS.gene59947.t1;Parent=MS.gene59947.t1 |
| Gene Sequence |
| Protein sequence |
