Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60160.t1 | XP_024630962.1 | 77.6 | 98 | 6 | 1 | 1 | 98 | 144 | 225 | 1.90E-30 | 142.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60160.t1 | G7I3G4 | 77.6 | 98 | 6 | 1 | 1 | 98 | 144 | 225 | 1.4e-30 | 142.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene60160 | 0.80269 | 4.98E-49 | -1.69E-46 |
MS.gene049254 | MS.gene60160 | 0.800199 | 1.61E-48 | -1.69E-46 |
MS.gene051800 | MS.gene60160 | 0.805619 | 1.22E-49 | -1.69E-46 |
MS.gene052519 | MS.gene60160 | 0.806107 | 9.66E-50 | -1.69E-46 |
MS.gene053296 | MS.gene60160 | 0.804383 | 2.22E-49 | -1.69E-46 |
MS.gene054236 | MS.gene60160 | 0.807879 | 4.07E-50 | -1.69E-46 |
MS.gene054651 | MS.gene60160 | 0.807048 | 6.11E-50 | -1.69E-46 |
MS.gene054775 | MS.gene60160 | 0.812224 | 4.72E-51 | -1.69E-46 |
MS.gene055818 | MS.gene60160 | 0.802994 | 4.31E-49 | -1.69E-46 |
MS.gene055926 | MS.gene60160 | 0.804644 | 1.96E-49 | -1.69E-46 |
MS.gene056595 | MS.gene60160 | 0.803188 | 3.93E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60160.t1 | MTR_1g007860 | 77.551 | 98 | 6 | 1 | 1 | 98 | 144 | 225 | 2.11e-44 | 150 |
MS.gene60160.t1 | MTR_8g093450 | 92.308 | 39 | 3 | 0 | 99 | 137 | 57 | 95 | 2.74e-19 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 5.06e-35 | 123 |
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 5.17e-35 | 123 |
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 1.67e-34 | 122 |
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 1.94e-34 | 123 |
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 1.94e-34 | 123 |
MS.gene60160.t1 | AT5G53050 | 61.224 | 98 | 22 | 1 | 1 | 98 | 132 | 213 | 4.45e-34 | 123 |
Find 32 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACTTCAGCTCTTTGTTC+AGG | 0.335642 | 8.4:+2699524 | None:intergenic |
ATGCTTAATACAAATTTAAT+CGG | 0.354092 | 8.4:-2699742 | MS.gene60160:CDS |
AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 8.4:-2698944 | MS.gene60160:CDS |
GACTCTTTGCCTTCAAGAAT+CGG | 0.405184 | 8.4:+2699546 | None:intergenic |
GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 8.4:-2699029 | MS.gene60160:CDS |
TTGCTCAATGCAACAGGTGG+TGG | 0.415046 | 8.4:-2700362 | MS.gene60160:CDS |
GAGGAGAACCATATTGTATC+AGG | 0.416982 | 8.4:-2699120 | MS.gene60160:intron |
ATTAAATTTGTATTAAGCAT+TGG | 0.420198 | 8.4:+2699745 | None:intergenic |
GCCATGGAGAGAACTCTATC+AGG | 0.426456 | 8.4:+2700386 | None:intergenic |
GTGCTGTACCTGATACAATA+TGG | 0.431715 | 8.4:+2699112 | None:intergenic |
TGTTGCTTACCGATTCTTGA+AGG | 0.432235 | 8.4:-2699555 | MS.gene60160:CDS |
ATGGCCTTGCTCAATGCAAC+AGG | 0.435885 | 8.4:-2700368 | MS.gene60160:CDS |
AGCTTGTAAATTTGCAGCAA+TGG | 0.448455 | 8.4:-2700411 | MS.gene60160:CDS |
CGTGCTTTACTTGTGAATAG+TGG | 0.457639 | 8.4:+2699492 | None:intergenic |
GTTTAACAAAGAGGAGGGAT+TGG | 0.467919 | 8.4:-2698976 | MS.gene60160:CDS |
CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 8.4:+2699127 | None:intergenic |
GAATATCTTGAGGAATATGT+TGG | 0.532265 | 8.4:-2699152 | MS.gene60160:CDS |
TGTTGCATTGAGCAAGGCCA+TGG | 0.536559 | 8.4:+2700370 | None:intergenic |
ACAAAGAGCTGAAGTTGACT+TGG | 0.536899 | 8.4:-2699519 | MS.gene60160:CDS |
AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 8.4:-2698943 | MS.gene60160:CDS |
TCCTGATAGAGTTCTCTCCA+TGG | 0.577551 | 8.4:-2700387 | MS.gene60160:CDS |
TATCAGTTTAACAAAGAGGA+GGG | 0.577814 | 8.4:-2698981 | MS.gene60160:CDS |
GTATTATCAGTTTAACAAAG+AGG | 0.579681 | 8.4:-2698985 | MS.gene60160:CDS |
GTGCTTTACTTGTGAATAGT+GGG | 0.598972 | 8.4:+2699493 | None:intergenic |
TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 8.4:-2699012 | MS.gene60160:CDS |
TTATCAGTTTAACAAAGAGG+AGG | 0.617782 | 8.4:-2698982 | MS.gene60160:CDS |
ACCACCTGTTGCATTGAGCA+AGG | 0.621860 | 8.4:+2700364 | None:intergenic |
TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 8.4:-2699162 | MS.gene60160:intron |
AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 8.4:-2698939 | MS.gene60160:CDS |
AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 8.4:-2699139 | MS.gene60160:CDS |
GCCTTGCTCAATGCAACAGG+TGG | 0.684486 | 8.4:-2700365 | MS.gene60160:CDS |
GTAAGCAACAGAAATTTCGT+CGG | 0.696738 | 8.4:+2699568 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGCTTAATACAAATTTAAT+CGG | - | chr8.4:2699606-2699625 | MS.gene60160:intron | 15.0% |
!! | ATTAAATTTGTATTAAGCAT+TGG | + | chr8.4:2699606-2699625 | None:intergenic | 15.0% |
!!! | AAATGTTTCGATTTTTTTTA+CGG | - | chr8.4:2699062-2699081 | MS.gene60160:intron | 15.0% |
!!! | TTTTAAAATCACTACTTTAA+TGG | + | chr8.4:2699962-2699981 | None:intergenic | 15.0% |
!! | TGCAATTAGATATATAATGT+TGG | - | chr8.4:2699637-2699656 | MS.gene60160:intron | 20.0% |
!! | TTAAAAAATTGAATCACTCA+AGG | - | chr8.4:2699976-2699995 | MS.gene60160:intron | 20.0% |
!!! | AATTTCTTACTACTGATTTT+AGG | - | chr8.4:2699405-2699424 | MS.gene60160:intron | 20.0% |
!!! | TATTAACATTAAGTTGAAGA+AGG | - | chr8.4:2700048-2700067 | MS.gene60160:intron | 20.0% |
! | AATGGTAAGTTTAATATAGC+TGG | + | chr8.4:2699944-2699963 | None:intergenic | 25.0% |
! | ACATTTCACAGATTTATACA+AGG | + | chr8.4:2699048-2699067 | None:intergenic | 25.0% |
! | ATGGTAAGTTTAATATAGCT+GGG | + | chr8.4:2699943-2699962 | None:intergenic | 25.0% |
! | CATTTCACAGATTTATACAA+GGG | + | chr8.4:2699047-2699066 | None:intergenic | 25.0% |
! | GTATATGATATAAAAGAGTC+TGG | - | chr8.4:2700006-2700025 | MS.gene60160:intron | 25.0% |
! | GTATTATCAGTTTAACAAAG+AGG | - | chr8.4:2700363-2700382 | MS.gene60160:CDS | 25.0% |
! | TAATATAGAAGAGAAAGTCA+CGG | - | chr8.4:2699272-2699291 | MS.gene60160:intron | 25.0% |
! | TTCAACTAAATTTCTCCTAA+AGG | + | chr8.4:2699476-2699495 | None:intergenic | 25.0% |
! | TTTAATTACAAACGTAGTTC+AGG | - | chr8.4:2699354-2699373 | MS.gene60160:intron | 25.0% |
!! | AAATTTTATATATCACGTGC+AGG | - | chr8.4:2700174-2700193 | MS.gene60160:intron | 25.0% |
!! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr8.4:2700404-2700423 | MS.gene60160:CDS | 25.0% |
!! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr8.4:2700405-2700424 | MS.gene60160:CDS | 25.0% |
!!! | TATCTTGTTTTTTCAGTCTT+GGG | - | chr8.4:2700072-2700091 | MS.gene60160:intron | 25.0% |
AACTAACTACATTGGGAATT+GGG | - | chr8.4:2699132-2699151 | MS.gene60160:CDS | 30.0% | |
ATCTTTCTTATCTTTCACCT+TGG | + | chr8.4:2700317-2700336 | None:intergenic | 30.0% | |
CTAAATTTCTCCTAAAGGTT+TGG | + | chr8.4:2699471-2699490 | None:intergenic | 30.0% | |
CTGAAAAGAAGCTTCAATTT+AGG | - | chr8.4:2700262-2700281 | MS.gene60160:intron | 30.0% | |
GAAGTTGCATACATAACAAA+TGG | - | chr8.4:2699382-2699401 | MS.gene60160:intron | 30.0% | |
GAATATCTTGAGGAATATGT+TGG | - | chr8.4:2700196-2700215 | MS.gene60160:intron | 30.0% | |
GCTAGTTAACTAACTACATT+GGG | - | chr8.4:2699125-2699144 | MS.gene60160:CDS | 30.0% | |
GGTTTCCTATGAACTATTAT+CGG | - | chr8.4:2699688-2699707 | MS.gene60160:intron | 30.0% | |
GTCACATAATATAGTACCTT+TGG | + | chr8.4:2699025-2699044 | None:intergenic | 30.0% | |
GTGAAAGATAAGAAAGATCT+TGG | - | chr8.4:2700319-2700338 | MS.gene60160:intron | 30.0% | |
TAACTAACTACATTGGGAAT+TGG | - | chr8.4:2699131-2699150 | MS.gene60160:CDS | 30.0% | |
TAGAACAAGAACCTCTTATA+AGG | + | chr8.4:2699745-2699764 | None:intergenic | 30.0% | |
TATCAGTTTAACAAAGAGGA+GGG | - | chr8.4:2700367-2700386 | MS.gene60160:CDS | 30.0% | |
TCTTTCTTATCTTTCACCTT+GGG | + | chr8.4:2700316-2700335 | None:intergenic | 30.0% | |
TGGTAAGTTTAATATAGCTG+GGG | + | chr8.4:2699942-2699961 | None:intergenic | 30.0% | |
TGTGTTAATGTGCTATCTTT+AGG | - | chr8.4:2700136-2700155 | MS.gene60160:intron | 30.0% | |
TTATCAGTTTAACAAAGAGG+AGG | - | chr8.4:2700366-2700385 | MS.gene60160:CDS | 30.0% | |
! | TGGTTTTCAATGTTTTCCAA+AGG | - | chr8.4:2699006-2699025 | MS.gene60160:CDS | 30.0% |
!!! | CTATCTTGTTTTTTCAGTCT+TGG | - | chr8.4:2700071-2700090 | MS.gene60160:intron | 30.0% |
AAAACTCCAAACTAGTGCAA+AGG | + | chr8.4:2699714-2699733 | None:intergenic | 35.0% | |
AAAGGCCGATAATAGTTCAT+AGG | + | chr8.4:2699696-2699715 | None:intergenic | 35.0% | |
AGCTTGTAAATTTGCAGCAA+TGG | - | chr8.4:2698937-2698956 | MS.gene60160:CDS | 35.0% | |
AGGTTTGGATGATCGATAAT+TGG | + | chr8.4:2699456-2699475 | None:intergenic | 35.0% | |
ATCTGTTTGACACATGTACA+TGG | - | chr8.4:2699667-2699686 | MS.gene60160:intron | 35.0% | |
CAAGAACCTCTTATAAGGAT+CGG | + | chr8.4:2699740-2699759 | None:intergenic | 35.0% | |
CGCTAGTTAACTAACTACAT+TGG | - | chr8.4:2699124-2699143 | MS.gene60160:CDS | 35.0% | |
GCACATTAACACAGATTTCT+AGG | + | chr8.4:2700129-2700148 | None:intergenic | 35.0% | |
GTAAGCAACAGAAATTTCGT+CGG | + | chr8.4:2699783-2699802 | None:intergenic | 35.0% | |
GTGCTTTACTTGTGAATAGT+GGG | + | chr8.4:2699858-2699877 | None:intergenic | 35.0% | |
TATCGATCATCCAAACCTTT+AGG | - | chr8.4:2699458-2699477 | MS.gene60160:intron | 35.0% | |
TCTTGGAATCATGAAAGTCA+AGG | - | chr8.4:2700336-2700355 | MS.gene60160:intron | 35.0% | |
! | AAGATGAAAAGTGTATGGGA+AGG | - | chr8.4:2700409-2700428 | MS.gene60160:CDS | 35.0% |
! | CGTTATGTGATTAGAAGCAT+TGG | - | chr8.4:2699085-2699104 | MS.gene60160:intron | 35.0% |
!! | TGATTTTAGGTGATCCTTGA+GGG | - | chr8.4:2699418-2699437 | MS.gene60160:intron | 35.0% |
AATATGTTGGAACCGTGAAG+AGG | - | chr8.4:2700209-2700228 | MS.gene60160:intron | 40.0% | |
ACAAAGAGCTGAAGTTGACT+TGG | - | chr8.4:2699829-2699848 | MS.gene60160:intron | 40.0% | |
ACTACATTGGGAATTGGGAT+TGG | - | chr8.4:2699137-2699156 | MS.gene60160:CDS | 40.0% | |
AGAGATAAGTGACAGAGAAG+TGG | - | chr8.4:2699218-2699237 | MS.gene60160:intron | 40.0% | |
AGTTTAATATAGCTGGGGAG+AGG | + | chr8.4:2699937-2699956 | None:intergenic | 40.0% | |
CAATATGGTTCTCCTCTTCA+CGG | + | chr8.4:2700224-2700243 | None:intergenic | 40.0% | |
CGTGCTTTACTTGTGAATAG+TGG | + | chr8.4:2699859-2699878 | None:intergenic | 40.0% | |
CTACATTGGGAATTGGGATT+GGG | - | chr8.4:2699138-2699157 | MS.gene60160:CDS | 40.0% | |
GACTCTTTGCCTTCAAGAAT+CGG | + | chr8.4:2699805-2699824 | None:intergenic | 40.0% | |
GAGGAGAACCATATTGTATC+AGG | - | chr8.4:2700228-2700247 | MS.gene60160:intron | 40.0% | |
GTCATGACTTGATATACCCA+AGG | - | chr8.4:2700297-2700316 | MS.gene60160:intron | 40.0% | |
GTGCTGTACCTGATACAATA+TGG | + | chr8.4:2700239-2700258 | None:intergenic | 40.0% | |
GTTTAACAAAGAGGAGGGAT+TGG | - | chr8.4:2700372-2700391 | MS.gene60160:CDS | 40.0% | |
GTTTAATATAGCTGGGGAGA+GGG | + | chr8.4:2699936-2699955 | None:intergenic | 40.0% | |
TCAACTTCAGCTCTTTGTTC+AGG | + | chr8.4:2699827-2699846 | None:intergenic | 40.0% | |
TCACAAGTAAAGCACGTTCT+TGG | - | chr8.4:2699863-2699882 | MS.gene60160:intron | 40.0% | |
TTTAATATAGCTGGGGAGAG+GGG | + | chr8.4:2699935-2699954 | None:intergenic | 40.0% | |
TTTCCTCCGATCCTTATAAG+AGG | - | chr8.4:2699731-2699750 | MS.gene60160:intron | 40.0% | |
!! | CTGATTTTAGGTGATCCTTG+AGG | - | chr8.4:2699417-2699436 | MS.gene60160:intron | 40.0% |
!! | TGTTGCTTACCGATTCTTGA+AGG | - | chr8.4:2699793-2699812 | MS.gene60160:intron | 40.0% |
AGTGACAGAGAAGTGGTAGT+TGG | - | chr8.4:2699225-2699244 | MS.gene60160:intron | 45.0% | |
ATTGGGATTGGGTGTCTTTG+TGG | - | chr8.4:2699149-2699168 | MS.gene60160:CDS | 45.0% | |
GAACCTCTTATAAGGATCGG+AGG | + | chr8.4:2699737-2699756 | None:intergenic | 45.0% | |
GTGACAGAGAAGTGGTAGTT+GGG | - | chr8.4:2699226-2699245 | MS.gene60160:intron | 45.0% | |
TATCGGCCTTTGCACTAGTT+TGG | - | chr8.4:2699705-2699724 | MS.gene60160:intron | 45.0% | |
TCACGTGCAGGAATATCTTG+AGG | - | chr8.4:2700186-2700205 | MS.gene60160:intron | 45.0% | |
TCCTGATAGAGTTCTCTCCA+TGG | - | chr8.4:2698961-2698980 | MS.gene60160:CDS | 45.0% | |
TTCGTCGGTCAAACTGCAAA+AGG | + | chr8.4:2699768-2699787 | None:intergenic | 45.0% | |
!! | TTTTAGGTGATCCTTGAGGG+TGG | - | chr8.4:2699421-2699440 | MS.gene60160:intron | 45.0% |
AAAGTCACGAATCGCGATCC+GGG | - | chr8.4:2699310-2699329 | MS.gene60160:intron | 50.0% | |
ACCACCTGTTGCATTGAGCA+AGG | + | chr8.4:2698987-2699006 | None:intergenic | 50.0% | |
CAAAGTCACGAATCGCGATC+CGG | - | chr8.4:2699309-2699328 | MS.gene60160:intron | 50.0% | |
GATCGCGATTCGTGACTTTG+TGG | + | chr8.4:2699309-2699328 | None:intergenic | 50.0% | |
GCCATGGAGAGAACTCTATC+AGG | + | chr8.4:2698965-2698984 | None:intergenic | 50.0% | |
GCGATTCGTGACTTTGTGGA+GGG | + | chr8.4:2699305-2699324 | None:intergenic | 50.0% | |
GGATTGGGTGTCTTTGTGGA+GGG | - | chr8.4:2699153-2699172 | MS.gene60160:CDS | 50.0% | |
TGTTGCATTGAGCAAGGCCA+TGG | + | chr8.4:2698981-2699000 | None:intergenic | 50.0% | |
TTGCTCAATGCAACAGGTGG+TGG | - | chr8.4:2698986-2699005 | MS.gene60160:CDS | 50.0% | |
! | ATGGCCTTGCTCAATGCAAC+AGG | - | chr8.4:2698980-2698999 | MS.gene60160:CDS | 50.0% |
ATAGCTGGGGAGAGGGGTTA+GGG | + | chr8.4:2699929-2699948 | None:intergenic | 55.0% | |
CGCGATTCGTGACTTTGTGG+AGG | + | chr8.4:2699306-2699325 | None:intergenic | 55.0% | |
GCCTTGCTCAATGCAACAGG+TGG | - | chr8.4:2698983-2699002 | MS.gene60160:CDS | 55.0% | |
GGACTCAATTGCCACCCTCA+AGG | + | chr8.4:2699435-2699454 | None:intergenic | 55.0% | |
GGGATTGGGTGTCTTTGTGG+AGG | - | chr8.4:2699152-2699171 | MS.gene60160:CDS | 55.0% | |
TATAGCTGGGGAGAGGGGTT+AGG | + | chr8.4:2699930-2699949 | None:intergenic | 55.0% | |
TGTGACTAGCAAGCACCACC+CGG | + | chr8.4:2699331-2699350 | None:intergenic | 55.0% | |
GTCACGAATCGCGATCCGGG+TGG | - | chr8.4:2699313-2699332 | MS.gene60160:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 2698932 | 2700438 | 2698932 | ID=MS.gene60160 |
chr8.4 | mRNA | 2698932 | 2700438 | 2698932 | ID=MS.gene60160.t1;Parent=MS.gene60160 |
chr8.4 | exon | 2700343 | 2700438 | 2700343 | ID=MS.gene60160.t1.exon1;Parent=MS.gene60160.t1 |
chr8.4 | CDS | 2700343 | 2700438 | 2700343 | ID=cds.MS.gene60160.t1;Parent=MS.gene60160.t1 |
chr8.4 | exon | 2699739 | 2699788 | 2699739 | ID=MS.gene60160.t1.exon2;Parent=MS.gene60160.t1 |
chr8.4 | CDS | 2699739 | 2699788 | 2699739 | ID=cds.MS.gene60160.t1;Parent=MS.gene60160.t1 |
chr8.4 | exon | 2699502 | 2699595 | 2699502 | ID=MS.gene60160.t1.exon3;Parent=MS.gene60160.t1 |
chr8.4 | CDS | 2699502 | 2699595 | 2699502 | ID=cds.MS.gene60160.t1;Parent=MS.gene60160.t1 |
chr8.4 | exon | 2699121 | 2699174 | 2699121 | ID=MS.gene60160.t1.exon4;Parent=MS.gene60160.t1 |
chr8.4 | CDS | 2699121 | 2699174 | 2699121 | ID=cds.MS.gene60160.t1;Parent=MS.gene60160.t1 |
chr8.4 | exon | 2698932 | 2699051 | 2698932 | ID=MS.gene60160.t1.exon5;Parent=MS.gene60160.t1 |
chr8.4 | CDS | 2698932 | 2699051 | 2698932 | ID=cds.MS.gene60160.t1;Parent=MS.gene60160.t1 |
Gene Sequence |
Protein sequence |