Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60284.t1 | XP_003588767.2 | 90.9 | 463 | 38 | 2 | 1 | 463 | 1 | 459 | 7.70E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60284.t1 | Q94C48 | 34.4 | 360 | 213 | 10 | 105 | 447 | 83 | 436 | 3.5e-29 | 131.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60284.t1 | G7I707 | 90.9 | 463 | 38 | 2 | 1 | 463 | 1 | 459 | 5.5e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33200 | MS.gene60284 | PPI |
| MS.gene61699 | MS.gene60284 | PPI |
| MS.gene67065 | MS.gene60284 | PPI |
| MS.gene072889 | MS.gene60284 | PPI |
| MS.gene014835 | MS.gene60284 | PPI |
| MS.gene60284 | MS.gene072889 | PPI |
| MS.gene32634 | MS.gene60284 | PPI |
| MS.gene015987 | MS.gene60284 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60284.t1 | MTR_1g012530 | 91.145 | 463 | 37 | 2 | 1 | 463 | 1 | 459 | 0.0 | 814 |
| MS.gene60284.t1 | MTR_1g012530 | 88.715 | 319 | 35 | 1 | 1 | 319 | 1 | 318 | 0.0 | 544 |
| MS.gene60284.t1 | MTR_3g107050 | 51.368 | 475 | 190 | 10 | 2 | 459 | 1 | 451 | 1.61e-135 | 398 |
| MS.gene60284.t1 | MTR_1g055085 | 60.145 | 138 | 52 | 2 | 228 | 365 | 233 | 367 | 1.04e-39 | 149 |
| MS.gene60284.t1 | MTR_7g106750 | 55.034 | 149 | 45 | 5 | 228 | 373 | 238 | 367 | 2.86e-36 | 139 |
| MS.gene60284.t1 | MTR_1g075310 | 48.092 | 131 | 63 | 2 | 230 | 355 | 217 | 347 | 3.48e-29 | 118 |
| MS.gene60284.t1 | MTR_1g080690 | 48.062 | 129 | 55 | 3 | 230 | 346 | 195 | 323 | 4.42e-25 | 106 |
| MS.gene60284.t1 | MTR_7g115310 | 48.031 | 127 | 62 | 1 | 221 | 347 | 207 | 329 | 6.69e-22 | 99.8 |
| MS.gene60284.t1 | MTR_6g022230 | 44.444 | 90 | 45 | 3 | 229 | 316 | 416 | 502 | 9.37e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60284.t1 | AT4G32330 | 42.820 | 383 | 179 | 12 | 2 | 375 | 1 | 352 | 7.34e-75 | 241 |
| MS.gene60284.t1 | AT4G32330 | 42.708 | 384 | 179 | 13 | 2 | 375 | 1 | 353 | 1.78e-73 | 238 |
| MS.gene60284.t1 | AT4G32330 | 42.708 | 384 | 179 | 13 | 2 | 375 | 1 | 353 | 1.78e-73 | 238 |
| MS.gene60284.t1 | AT4G32330 | 42.708 | 384 | 179 | 13 | 2 | 375 | 1 | 353 | 1.78e-73 | 238 |
| MS.gene60284.t1 | AT2G25480 | 48.864 | 264 | 124 | 6 | 143 | 403 | 99 | 354 | 4.82e-63 | 210 |
| MS.gene60284.t1 | AT2G25480 | 48.864 | 264 | 125 | 6 | 143 | 403 | 99 | 355 | 5.99e-63 | 209 |
| MS.gene60284.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 1.04e-39 | 148 |
| MS.gene60284.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 1.04e-39 | 148 |
| MS.gene60284.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 1.04e-39 | 148 |
| MS.gene60284.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 196 | 283 | 3.99e-28 | 114 |
| MS.gene60284.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 195 | 282 | 4.38e-28 | 114 |
| MS.gene60284.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 231 | 318 | 7.99e-28 | 114 |
| MS.gene60284.t1 | AT3G23090 | 63.043 | 92 | 30 | 1 | 230 | 317 | 195 | 286 | 2.55e-27 | 112 |
| MS.gene60284.t1 | AT3G23090 | 63.043 | 92 | 30 | 1 | 230 | 317 | 231 | 322 | 4.50e-27 | 112 |
| MS.gene60284.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 84 | 202 | 7.59e-24 | 99.4 |
| MS.gene60284.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 84 | 202 | 7.59e-24 | 99.4 |
| MS.gene60284.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 80 | 198 | 8.40e-24 | 99.0 |
| MS.gene60284.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 122 | 211 | 1.17e-22 | 98.2 |
| MS.gene60284.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 123 | 212 | 1.22e-22 | 97.8 |
| MS.gene60284.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 127 | 216 | 1.24e-22 | 98.2 |
| MS.gene60284.t1 | AT1G54460 | 45.378 | 119 | 60 | 2 | 206 | 323 | 145 | 259 | 1.30e-21 | 95.9 |
| MS.gene60284.t1 | AT1G70950 | 50.000 | 86 | 39 | 1 | 229 | 310 | 328 | 413 | 5.88e-19 | 89.7 |
Find 114 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATGGATTCAGTTTC+AGG | 0.129280 | 1.1:+8573644 | MS.gene60284:CDS |
| CTGAAACTGAATCCATAATT+TGG | 0.234073 | 1.1:-8573643 | None:intergenic |
| GTGGGGACACTTCCAAATTA+TGG | 0.282695 | 1.1:+8573631 | MS.gene60284:CDS |
| TCAGCAGGCAAGGGATTAAT+TGG | 0.284030 | 1.1:-8572229 | None:intergenic |
| CACGACGAACCTTCTAATTC+TGG | 0.301211 | 1.1:+8572283 | MS.gene60284:CDS |
| TCCATTGCCAACTTTCTATC+AGG | 0.308595 | 1.1:+8574014 | MS.gene60284:CDS |
| TTTCTCTTCCCCTGTAGCTT+TGG | 0.321630 | 1.1:-8576342 | None:intergenic |
| GTCTTCTTCCGACCAAGCTT+GGG | 0.328574 | 1.1:-8576089 | None:intergenic |
| AAGCTAGTATCTTTCTTTGT+TGG | 0.330091 | 1.1:-8576317 | None:intergenic |
| ATGGAGTTGCTTTAAAAGTT+AGG | 0.333174 | 1.1:-8573996 | None:intergenic |
| CAGCGGTGTTAATGCAAGTT+TGG | 0.358129 | 1.1:+8572660 | MS.gene60284:CDS |
| ACATCAGAAGACGCTGCTTC+AGG | 0.363490 | 1.1:-8573272 | None:intergenic |
| GTTCGTCGTGAACACCGTTT+TGG | 0.381078 | 1.1:-8572270 | None:intergenic |
| GACGCTGCTTCAGGCTTTGA+AGG | 0.389307 | 1.1:-8573263 | None:intergenic |
| CTTCTCCTTGAACTTTATCA+AGG | 0.390003 | 1.1:-8573435 | None:intergenic |
| TAAGGTTGAGGAAAAGATTC+AGG | 0.390503 | 1.1:+8573811 | MS.gene60284:CDS |
| AGCTGCTGAATTGGAAGAAT+TGG | 0.396114 | 1.1:-8576279 | None:intergenic |
| TGTAGGTGCAGCTGCTGAAT+TGG | 0.397011 | 1.1:-8576288 | None:intergenic |
| AGTCTTCTTCCGACCAAGCT+TGG | 0.401334 | 1.1:-8576090 | None:intergenic |
| CAGTTGGAAAGCACTGGAAC+TGG | 0.409681 | 1.1:+8572394 | MS.gene60284:CDS |
| GGAACAGTCAAGAGCACAAA+AGG | 0.414883 | 1.1:+8572597 | MS.gene60284:CDS |
| CTTCCTAAGCTTTCTAATCT+CGG | 0.418203 | 1.1:-8573971 | None:intergenic |
| AGTATCTTTCTTTGTTGGCC+TGG | 0.422922 | 1.1:-8576312 | None:intergenic |
| TTCTTTGTTGGCCTGGATGT+AGG | 0.428959 | 1.1:-8576305 | None:intergenic |
| TGTCCCCACTCTGCGAGGTT+TGG | 0.435993 | 1.1:-8573617 | None:intergenic |
| ACTAGCTTATCCAAAGCTAC+AGG | 0.441373 | 1.1:+8576332 | MS.gene60284:CDS |
| AGCTCCACCTTAGGAGGAGC+AGG | 0.446075 | 1.1:-8574039 | None:intergenic |
| CCATCCTCTCCAGAATTAGA+AGG | 0.447912 | 1.1:-8572292 | None:intergenic |
| TTTGCATTCTTATTCTTGAC+AGG | 0.449148 | 1.1:-8572622 | None:intergenic |
| GACAATGGCATCTCCTTTAG+TGG | 0.454757 | 1.1:-8576201 | None:intergenic |
| ACCTTCTTCAGCTCCACCTT+AGG | 0.458299 | 1.1:-8574048 | None:intergenic |
| CGAAGGATCGAATGACAACT+TGG | 0.463763 | 1.1:+8572438 | MS.gene60284:CDS |
| CAAAGTTGGAAAAGACAAAC+AGG | 0.463790 | 1.1:+8572693 | MS.gene60284:CDS |
| TTGTGAGCAGTTCCTCACTA+AGG | 0.463940 | 1.1:+8573793 | MS.gene60284:intron |
| TTCTGAAAATATCAATCAGT+TGG | 0.465513 | 1.1:+8572378 | MS.gene60284:CDS |
| TGTGCTCTTGACTGTTCCGT+TGG | 0.466042 | 1.1:-8572592 | None:intergenic |
| CAATAATTTGATCGTTTCAA+AGG | 0.466984 | 1.1:+8572465 | MS.gene60284:CDS |
| AATTCAGAGTCTGATGGAAA+TGG | 0.469317 | 1.1:+8576119 | MS.gene60284:CDS |
| TCAGGAGCCTGCTCCTCCTA+AGG | 0.477024 | 1.1:+8574032 | MS.gene60284:CDS |
| TTCACAAGACATTCTTCACT+TGG | 0.478405 | 1.1:-8576455 | None:intergenic |
| TTCTCCTTGAACTTTATCAA+GGG | 0.481497 | 1.1:-8573434 | None:intergenic |
| GGTCCTTTCAGAAGCAAGTC+GGG | 0.481741 | 1.1:-8576258 | None:intergenic |
| TCTGAAGGAGCCGCATTATG+AGG | 0.482661 | 1.1:-8576428 | None:intergenic |
| GCGGTGAACGAGCCGAGAAA+AGG | 0.484677 | 1.1:+8573668 | MS.gene60284:CDS |
| GCATCATCCGCTGTCTCAAA+TGG | 0.487290 | 1.1:+8572715 | MS.gene60284:CDS |
| ATCAAGTCCATCAGCAGGCA+AGG | 0.494390 | 1.1:-8572239 | None:intergenic |
| ATTAATCCCTTGCCTGCTGA+TGG | 0.494725 | 1.1:+8572232 | MS.gene60284:CDS |
| TTCTTCAGCTCCACCTTAGG+AGG | 0.495466 | 1.1:-8574045 | None:intergenic |
| ATCAATCAGTTGGAAAGCAC+TGG | 0.499209 | 1.1:+8572388 | MS.gene60284:CDS |
| CCGCTCATTCAATGATCGGC+AGG | 0.502367 | 1.1:+8572780 | MS.gene60284:CDS |
| CAGAAGCAAGTCGGGTAGGA+AGG | 0.504025 | 1.1:-8576250 | None:intergenic |
| GGACCCCTTGATAAAGTTCA+AGG | 0.509202 | 1.1:+8573430 | MS.gene60284:CDS |
| TTCTGTATTTACAGTAACAT+GGG | 0.519769 | 1.1:-8572335 | None:intergenic |
| TCTTCACTTGGCTTATCTGA+AGG | 0.524692 | 1.1:-8576443 | None:intergenic |
| ACAGAAACTGTTGTTCCAGA+TGG | 0.529358 | 1.1:+8572352 | MS.gene60284:CDS |
| CAGCAGCTGCACCTACATCC+AGG | 0.533108 | 1.1:+8576294 | MS.gene60284:CDS |
| AACTGGAAACTCGTCTATGA+AGG | 0.533703 | 1.1:+8572411 | MS.gene60284:CDS |
| AGGTTTGGCATCTTCAGTGT+TGG | 0.535856 | 1.1:-8573602 | None:intergenic |
| AATAAGAATGCAAAGGTTGG+TGG | 0.536003 | 1.1:+8572631 | MS.gene60284:CDS |
| TTTCTGTATTTACAGTAACA+TGG | 0.539403 | 1.1:-8572336 | None:intergenic |
| AAGAATAAGAATGCAAAGGT+TGG | 0.541032 | 1.1:+8572628 | MS.gene60284:CDS |
| TCACAAGGAAACTCCACTAA+AGG | 0.546027 | 1.1:+8576188 | MS.gene60284:CDS |
| CCTTCTAATTCTGGAGAGGA+TGG | 0.547143 | 1.1:+8572292 | MS.gene60284:CDS |
| AAAGATTCAGGCAAAGGAGG+AGG | 0.547835 | 1.1:+8573823 | MS.gene60284:CDS |
| TCCTAAGGTGGAGCTGAAGA+AGG | 0.549377 | 1.1:+8574047 | MS.gene60284:CDS |
| TCTCCTTGAACTTTATCAAG+GGG | 0.551027 | 1.1:-8573433 | None:intergenic |
| CAAACTTGCATTAACACCGC+TGG | 0.555031 | 1.1:-8572659 | None:intergenic |
| GATGCCAAACCTCGCAGAGT+GGG | 0.558738 | 1.1:+8573613 | MS.gene60284:CDS |
| CTAGCTTATCCAAAGCTACA+GGG | 0.558761 | 1.1:+8576333 | MS.gene60284:CDS |
| TCTTCTTCCGACCAAGCTTG+GGG | 0.559077 | 1.1:-8576088 | None:intergenic |
| TGAGGAAAAGATTCAGGCAA+AGG | 0.563894 | 1.1:+8573817 | MS.gene60284:CDS |
| GCTCAATGCACAGTCATGAT+CGG | 0.564147 | 1.1:-8576527 | None:intergenic |
| TCAACAAATTCAGAGTCTGA+TGG | 0.564610 | 1.1:+8576113 | MS.gene60284:CDS |
| GCAGGCTCCTGATAGAAAGT+TGG | 0.569966 | 1.1:-8574021 | None:intergenic |
| AGGCCGAGATTAGAAAGCTT+AGG | 0.571850 | 1.1:+8573968 | MS.gene60284:CDS |
| CTTGATGATGTCCACCAAAA+CGG | 0.572886 | 1.1:+8572256 | MS.gene60284:CDS |
| ACATCATCAAGTCCATCAGC+AGG | 0.573313 | 1.1:-8572244 | None:intergenic |
| AAAACCGCTCATTCAATGAT+CGG | 0.576323 | 1.1:+8572776 | MS.gene60284:CDS |
| AGAAGCAAGTCGGGTAGGAA+GGG | 0.593358 | 1.1:-8576249 | None:intergenic |
| TGGTCCTTTCAGAAGCAAGT+CGG | 0.594849 | 1.1:-8576259 | None:intergenic |
| CTACCCGACTTGCTTCTGAA+AGG | 0.597161 | 1.1:+8576255 | MS.gene60284:CDS |
| GGAGCCTGCTCCTCCTAAGG+TGG | 0.600395 | 1.1:+8574035 | MS.gene60284:CDS |
| TCTTGTGACAACACGAGCTG+AGG | 0.603555 | 1.1:-8576503 | None:intergenic |
| AGTGAAGAATGTCTTGTGAA+TGG | 0.604525 | 1.1:+8576458 | MS.gene60284:CDS |
| CTTCTTCCGACCAAGCTTGG+GGG | 0.607681 | 1.1:-8576087 | None:intergenic |
| TCTTGTGAATGGTGACATAG+TGG | 0.607830 | 1.1:+8576469 | MS.gene60284:CDS |
| GGAAAAGATTCAGGCAAAGG+AGG | 0.608287 | 1.1:+8573820 | MS.gene60284:CDS |
| GAACAGTCAAGAGCACAAAA+GGG | 0.609638 | 1.1:+8572598 | MS.gene60284:CDS |
| AGTGAAAATAAAAGTTCCAA+CGG | 0.609860 | 1.1:+8572576 | MS.gene60284:CDS |
| TGTTGCTCTGCCTCATAATG+CGG | 0.612528 | 1.1:+8576418 | MS.gene60284:CDS |
| TCAAGTCCATCAGCAGGCAA+GGG | 0.615834 | 1.1:-8572238 | None:intergenic |
| TCGGCAGGCTCAACTGTCCA+AGG | 0.618945 | 1.1:+8572795 | MS.gene60284:CDS |
| TCTGTATTTACAGTAACATG+GGG | 0.619012 | 1.1:-8572334 | None:intergenic |
| GCAGTTCCTCACTAAGGTTG+AGG | 0.619309 | 1.1:+8573799 | MS.gene60284:intron |
| TCCTGATAGAAAGTTGGCAA+TGG | 0.619813 | 1.1:-8574015 | None:intergenic |
| CCTGCCGATCATTGAATGAG+CGG | 0.621740 | 1.1:-8572780 | None:intergenic |
| ATGCCAAACCTCGCAGAGTG+GGG | 0.623165 | 1.1:+8573614 | MS.gene60284:CDS |
| AACATTTGTATCACTTGACA+AGG | 0.624464 | 1.1:-8576399 | None:intergenic |
| TGTCAAGAATAAGAATGCAA+AGG | 0.625023 | 1.1:+8572624 | MS.gene60284:CDS |
| GGTAGCTGCAGTTCTCGACA+AGG | 0.636601 | 1.1:+8576140 | MS.gene60284:CDS |
| CTTTCAGAAGCAAGTCGGGT+AGG | 0.637355 | 1.1:-8576254 | None:intergenic |
| TCGTCTATGAAGGAAATCGA+AGG | 0.639138 | 1.1:+8572421 | MS.gene60284:CDS |
| GGAAGTGTCCCCACTCTGCG+AGG | 0.641410 | 1.1:-8573622 | None:intergenic |
| AGAAGTGCCATTTGAGACAG+CGG | 0.643689 | 1.1:-8572722 | None:intergenic |
| TAGCTTGCAAGCAAAATCCA+AGG | 0.644380 | 1.1:+8573853 | MS.gene60284:CDS |
| AAGGTTGGTGGTAGTTCCAG+CGG | 0.645340 | 1.1:+8572643 | MS.gene60284:CDS |
| TAGCTTATCCAAAGCTACAG+GGG | 0.645381 | 1.1:+8576334 | MS.gene60284:CDS |
| ACGAGCCGAGAAAAGGAGAG+AGG | 0.654233 | 1.1:+8573675 | MS.gene60284:CDS |
| GTAGGAAGGGACTTTCGTAG+TGG | 0.654273 | 1.1:-8576236 | None:intergenic |
| CTGAACGAGAAAGTGTCACA+AGG | 0.655908 | 1.1:+8576173 | MS.gene60284:CDS |
| CGAACCTTCTAATTCTGGAG+AGG | 0.658571 | 1.1:+8572288 | MS.gene60284:CDS |
| TATGGATTCAGTTTCAGGTG+CGG | 0.674466 | 1.1:+8573649 | MS.gene60284:CDS |
| AGATGCCAAACCTCGCAGAG+TGG | 0.675110 | 1.1:+8573612 | MS.gene60284:CDS |
| CTGTATTTACAGTAACATGG+GGG | 0.709302 | 1.1:-8572333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAAGATTATGTAA+AGG | - | chr1.1:8575877-8575896 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATACTAGAAA+AGG | + | chr1.1:8575720-8575739 | MS.gene60284:intron | 10.0% |
| !!! | TATAATAATTTTTAGAATTC+AGG | - | chr1.1:8575181-8575200 | None:intergenic | 10.0% |
| !!! | TATTATATTTTTATAGTTCA+GGG | - | chr1.1:8572997-8573016 | None:intergenic | 10.0% |
| !!! | TTATTATATTTTTATAGTTC+AGG | - | chr1.1:8572998-8573017 | None:intergenic | 10.0% |
| !!! | TTTTCTAGTATAAATAAAAA+TGG | - | chr1.1:8575721-8575740 | None:intergenic | 10.0% |
| !! | AAAAACAAAATCATTGAAAA+AGG | + | chr1.1:8573408-8573427 | MS.gene60284:CDS | 15.0% |
| !! | AAAACAAAATCATTGAAAAA+GGG | + | chr1.1:8573409-8573428 | MS.gene60284:CDS | 15.0% |
| !! | AAAGCAAATAAAAAAATTTC+TGG | - | chr1.1:8574243-8574262 | None:intergenic | 15.0% |
| !! | AGTAAAAATGATACTTATAA+GGG | + | chr1.1:8573337-8573356 | MS.gene60284:intron | 15.0% |
| !! | TAAAAAAAATAAGGTTTCAA+AGG | - | chr1.1:8575359-8575378 | None:intergenic | 15.0% |
| !! | TAGTAAAAATGATACTTATA+AGG | + | chr1.1:8573336-8573355 | MS.gene60284:intron | 15.0% |
| !!! | TAAACTATTTCTATAGTTAA+GGG | + | chr1.1:8573136-8573155 | MS.gene60284:intron | 15.0% |
| !!! | TCTTTATTTGTGTAATATTT+GGG | + | chr1.1:8574559-8574578 | MS.gene60284:intron | 15.0% |
| !!! | TTAAACTATTTCTATAGTTA+AGG | + | chr1.1:8573135-8573154 | MS.gene60284:intron | 15.0% |
| !! | ATAATGTATTATTGAGTATG+AGG | + | chr1.1:8573542-8573561 | MS.gene60284:intron | 20.0% |
| !! | ATACGGATATATGAAATAAA+AGG | + | chr1.1:8574828-8574847 | MS.gene60284:intron | 20.0% |
| !! | CATTAGATAATCTGAAAATA+TGG | + | chr1.1:8574883-8574902 | MS.gene60284:intron | 20.0% |
| !! | GATAGTTTATGAATAATCTA+AGG | + | chr1.1:8573107-8573126 | MS.gene60284:intron | 20.0% |
| !! | TAAATAAACTCATAAGAGAA+AGG | - | chr1.1:8573478-8573497 | None:intergenic | 20.0% |
| !! | TCATATATCCGTATAAATAA+TGG | - | chr1.1:8574822-8574841 | None:intergenic | 20.0% |
| !! | TTACTCTTAAGATTATAGTT+TGG | + | chr1.1:8573202-8573221 | MS.gene60284:intron | 20.0% |
| !! | TTATTTATACTAGAAAAGGT+TGG | + | chr1.1:8575724-8575743 | MS.gene60284:intron | 20.0% |
| !! | TTGTAAGACCATTATTTATA+CGG | + | chr1.1:8574811-8574830 | MS.gene60284:intron | 20.0% |
| !!! | ACTATTTTAAAAGTAACTGA+GGG | - | chr1.1:8573057-8573076 | None:intergenic | 20.0% |
| !!! | AGATAATTTTCAAATCTGAA+TGG | - | chr1.1:8575447-8575466 | None:intergenic | 20.0% |
| !!! | AGATTTTCTTGTTTAAGAAA+AGG | - | chr1.1:8574419-8574438 | None:intergenic | 20.0% |
| !!! | ATAATTTTTAGAATTCAGGT+TGG | - | chr1.1:8575177-8575196 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTGTGTAATATT+TGG | + | chr1.1:8574558-8574577 | MS.gene60284:intron | 20.0% |
| !!! | TAATATATTTGCTTTGTTCT+AGG | + | chr1.1:8572546-8572565 | MS.gene60284:intron | 20.0% |
| !!! | TAATTATGATTTGGTTATTG+TGG | + | chr1.1:8575377-8575396 | MS.gene60284:intron | 20.0% |
| !!! | TAATTTTTAGAATTCAGGTT+GGG | - | chr1.1:8575176-8575195 | None:intergenic | 20.0% |
| !!! | TACTATTTTAAAAGTAACTG+AGG | - | chr1.1:8573058-8573077 | None:intergenic | 20.0% |
| !!! | TATTGTGGCTTTTAAAATTA+TGG | + | chr1.1:8575392-8575411 | MS.gene60284:intron | 20.0% |
| !!! | TATTTTCAGATTATCTAATG+TGG | - | chr1.1:8574883-8574902 | None:intergenic | 20.0% |
| !!! | TTATCTAAAACAGAAAGAAA+AGG | - | chr1.1:8572916-8572935 | None:intergenic | 20.0% |
| !!! | TTTTCTTAAACAAGAAAATC+TGG | + | chr1.1:8574418-8574437 | MS.gene60284:intron | 20.0% |
| ! | AAAATAGAAGAAGACACAAA+AGG | - | chr1.1:8572892-8572911 | None:intergenic | 25.0% |
| ! | AGTGAAAATAAAAGTTCCAA+CGG | + | chr1.1:8572576-8572595 | MS.gene60284:CDS | 25.0% |
| ! | ATTGTGATTTCAATTTCAGT+TGG | + | chr1.1:8575243-8575262 | MS.gene60284:intron | 25.0% |
| ! | CAATAATTTGATCGTTTCAA+AGG | + | chr1.1:8572465-8572484 | MS.gene60284:CDS | 25.0% |
| ! | GAATTACTGACATGATTAAA+AGG | - | chr1.1:8573924-8573943 | None:intergenic | 25.0% |
| ! | TAATGTATGTGTTTATGAGA+GGG | + | chr1.1:8574274-8574293 | MS.gene60284:intron | 25.0% |
| ! | TAGAACAAGTTTATAGTTCA+GGG | + | chr1.1:8573076-8573095 | MS.gene60284:intron | 25.0% |
| ! | TCAAGATATAACTACGTATA+TGG | + | chr1.1:8575211-8575230 | MS.gene60284:intron | 25.0% |
| ! | TCTAAATCAGTTATATGAGT+TGG | + | chr1.1:8572520-8572539 | MS.gene60284:intron | 25.0% |
| ! | TCTGAAAATATGGTTATAAG+TGG | + | chr1.1:8574893-8574912 | MS.gene60284:intron | 25.0% |
| ! | TGCTTATTAAACACATCATT+GGG | + | chr1.1:8575796-8575815 | MS.gene60284:intron | 25.0% |
| ! | TTCTGTATTTACAGTAACAT+GGG | - | chr1.1:8572338-8572357 | None:intergenic | 25.0% |
| ! | TTTCTGTATTTACAGTAACA+TGG | - | chr1.1:8572339-8572358 | None:intergenic | 25.0% |
| ! | TTTGTTCACATATATATCCA+CGG | + | chr1.1:8575514-8575533 | MS.gene60284:intron | 25.0% |
| !! | AGTAATTCTCACACTTTTAT+AGG | + | chr1.1:8573936-8573955 | MS.gene60284:intron | 25.0% |
| !! | ATATTTTCAGAATTTCCATC+TGG | - | chr1.1:8572370-8572389 | None:intergenic | 25.0% |
| !! | TTCTGAAAATATCAATCAGT+TGG | + | chr1.1:8572378-8572397 | MS.gene60284:CDS | 25.0% |
| !!! | AAAAGTTTGGTCTTATCATT+TGG | + | chr1.1:8576002-8576021 | MS.gene60284:intron | 25.0% |
| !!! | ATTGTTTTTTTCCTGTTATC+TGG | + | chr1.1:8575843-8575862 | MS.gene60284:intron | 25.0% |
| !!! | TGATGCTGATTTTTTTTTCA+TGG | - | chr1.1:8574447-8574466 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTCCTGTTATCT+GGG | + | chr1.1:8575844-8575863 | MS.gene60284:intron | 25.0% |
| AACATTTGTATCACTTGACA+AGG | - | chr1.1:8576402-8576421 | None:intergenic | 30.0% | |
| AACCTGTATAATGATACCAA+AGG | - | chr1.1:8573727-8573746 | None:intergenic | 30.0% | |
| AACTATCACTCTCACTTATT+TGG | + | chr1.1:8572970-8572989 | MS.gene60284:intron | 30.0% | |
| AACTATCACTCTCTCTTATT+TGG | - | chr1.1:8573163-8573182 | None:intergenic | 30.0% | |
| AAGAAATATCATATCTGTGG+AGG | + | chr1.1:8574788-8574807 | MS.gene60284:intron | 30.0% | |
| AAGAATAAGAATGCAAAGGT+TGG | + | chr1.1:8572628-8572647 | MS.gene60284:CDS | 30.0% | |
| AAGCTAGTATCTTTCTTTGT+TGG | - | chr1.1:8576320-8576339 | None:intergenic | 30.0% | |
| ACAGCATTTGGTATAAATGA+GGG | - | chr1.1:8575926-8575945 | None:intergenic | 30.0% | |
| ACAGGAAAAAAACAATCAAG+AGG | - | chr1.1:8575839-8575858 | None:intergenic | 30.0% | |
| ACTATCACTCTCACTTATTT+GGG | + | chr1.1:8572971-8572990 | MS.gene60284:intron | 30.0% | |
| ATTAAACACATCATTGGGAA+AGG | + | chr1.1:8575801-8575820 | MS.gene60284:intron | 30.0% | |
| CAAATTATGGATTCAGTTTC+AGG | + | chr1.1:8573644-8573663 | MS.gene60284:CDS | 30.0% | |
| CAGGAAAAAAACAATCAAGA+GGG | - | chr1.1:8575838-8575857 | None:intergenic | 30.0% | |
| CCAGAAAATATGTTTACAAG+TGG | + | chr1.1:8575106-8575125 | MS.gene60284:intron | 30.0% | |
| CTGAAACTGAATCCATAATT+TGG | - | chr1.1:8573646-8573665 | None:intergenic | 30.0% | |
| CTGCTTATTAAACACATCAT+TGG | + | chr1.1:8575795-8575814 | MS.gene60284:intron | 30.0% | |
| GAAAATATGGTTATAAGTGG+TGG | + | chr1.1:8574896-8574915 | MS.gene60284:intron | 30.0% | |
| GAGTTCCTAAGTAAACATTT+GGG | - | chr1.1:8572850-8572869 | None:intergenic | 30.0% | |
| GCTAAGAAATATCATATCTG+TGG | + | chr1.1:8574785-8574804 | MS.gene60284:intron | 30.0% | |
| GTAACCCATTTAAAAACTTC+TGG | - | chr1.1:8575979-8575998 | None:intergenic | 30.0% | |
| GTAATGTATGTGTTTATGAG+AGG | + | chr1.1:8574273-8574292 | MS.gene60284:intron | 30.0% | |
| GTAGAACAAGTTTATAGTTC+AGG | + | chr1.1:8573075-8573094 | MS.gene60284:intron | 30.0% | |
| GTTAGCTCATTATAGTGATT+TGG | + | chr1.1:8574745-8574764 | MS.gene60284:intron | 30.0% | |
| TAACTCAACCCTAACAAAAT+CGG | - | chr1.1:8574940-8574959 | None:intergenic | 30.0% | |
| TCTAATCAGTAGATGGTTTA+GGG | + | chr1.1:8575578-8575597 | MS.gene60284:intron | 30.0% | |
| TCTGTATTTACAGTAACATG+GGG | - | chr1.1:8572337-8572356 | None:intergenic | 30.0% | |
| TCTTCTGCAATTTATATCTC+AGG | - | chr1.1:8574700-8574719 | None:intergenic | 30.0% | |
| TGAAACTTAACATGCTAAAC+AGG | - | chr1.1:8574394-8574413 | None:intergenic | 30.0% | |
| TGAGTTCCTAAGTAAACATT+TGG | - | chr1.1:8572851-8572870 | None:intergenic | 30.0% | |
| TGTCAAGAATAAGAATGCAA+AGG | + | chr1.1:8572624-8572643 | MS.gene60284:CDS | 30.0% | |
| TTAAACACATCATTGGGAAA+GGG | + | chr1.1:8575802-8575821 | MS.gene60284:intron | 30.0% | |
| TTCTCCTTGAACTTTATCAA+GGG | - | chr1.1:8573437-8573456 | None:intergenic | 30.0% | |
| TTCTTCCCAAATGTTTACTT+AGG | + | chr1.1:8572842-8572861 | MS.gene60284:intron | 30.0% | |
| TTGTTCACATATATATCCAC+GGG | + | chr1.1:8575515-8575534 | MS.gene60284:intron | 30.0% | |
| TTTGCATTCTTATTCTTGAC+AGG | - | chr1.1:8572625-8572644 | None:intergenic | 30.0% | |
| ! | AATTTAACTTCTGTATCCTC+TGG | + | chr1.1:8576027-8576046 | MS.gene60284:intron | 30.0% |
| ! | ACATGTGATCTATTGATTAC+AGG | + | chr1.1:8573377-8573396 | MS.gene60284:intron | 30.0% |
| ! | AGCTTCCAGAAGTTTTTAAA+TGG | + | chr1.1:8575971-8575990 | MS.gene60284:intron | 30.0% |
| ! | CATAGTTCTACATTTGCAAT+AGG | - | chr1.1:8573506-8573525 | None:intergenic | 30.0% |
| ! | CATGTGATCTATTGATTACA+GGG | + | chr1.1:8573378-8573397 | MS.gene60284:intron | 30.0% |
| ! | CCACTTGTAAACATATTTTC+TGG | - | chr1.1:8575109-8575128 | None:intergenic | 30.0% |
| ! | GCTTCCAGAAGTTTTTAAAT+GGG | + | chr1.1:8575972-8575991 | MS.gene60284:intron | 30.0% |
| ! | TAAACCATCTACTGATTAGA+GGG | - | chr1.1:8575578-8575597 | None:intergenic | 30.0% |
| ! | TAAGATAAGAGTACACAACA+AGG | - | chr1.1:8574195-8574214 | None:intergenic | 30.0% |
| ! | TAAGGTTTCAAAGGAGATTT+TGG | - | chr1.1:8575350-8575369 | None:intergenic | 30.0% |
| ! | TAGTTTAAGAACCAAGTTGA+AGG | - | chr1.1:8572955-8572974 | None:intergenic | 30.0% |
| ! | TGATTTTCCTTTTCTTGAGT+TGG | + | chr1.1:8572493-8572512 | MS.gene60284:intron | 30.0% |
| ! | TTGAATGAGCGGTTTTTAAT+AGG | - | chr1.1:8572772-8572791 | None:intergenic | 30.0% |
| !! | AATGGGTTACTGTAAAAGTT+TGG | + | chr1.1:8575989-8576008 | MS.gene60284:intron | 30.0% |
| !! | ATGGAGTTGCTTTAAAAGTT+AGG | - | chr1.1:8573999-8574018 | None:intergenic | 30.0% |
| !! | TATGAGGATGTGTATTTTTG+TGG | + | chr1.1:8573558-8573577 | MS.gene60284:intron | 30.0% |
| !! | TGGTACTTTTAAGAGGATTA+AGG | - | chr1.1:8573585-8573604 | None:intergenic | 30.0% |
| AAAACCGCTCATTCAATGAT+CGG | + | chr1.1:8572776-8572795 | MS.gene60284:CDS | 35.0% | |
| AAATAATCAGTGCAGACTCA+AGG | - | chr1.1:8574220-8574239 | None:intergenic | 35.0% | |
| AAATGCTGTGTGAAAGTTCT+TGG | + | chr1.1:8575937-8575956 | MS.gene60284:intron | 35.0% | |
| AAGAACTTTCACACAGCATT+TGG | - | chr1.1:8575938-8575957 | None:intergenic | 35.0% | |
| AATAAGAATGCAAAGGTTGG+TGG | + | chr1.1:8572631-8572650 | MS.gene60284:CDS | 35.0% | |
| AATAATCAGTGCAGACTCAA+GGG | - | chr1.1:8574219-8574238 | None:intergenic | 35.0% | |
| AATTCAGAGTCTGATGGAAA+TGG | + | chr1.1:8576119-8576138 | MS.gene60284:CDS | 35.0% | |
| AGAGAAACCAACTCAAGAAA+AGG | - | chr1.1:8572503-8572522 | None:intergenic | 35.0% | |
| AGAGTCTATCCAATATCCAT+TGG | + | chr1.1:8574988-8575007 | MS.gene60284:intron | 35.0% | |
| AGTGAAGAATGTCTTGTGAA+TGG | + | chr1.1:8576458-8576477 | MS.gene60284:CDS | 35.0% | |
| AGTTCTACATTTGCAATAGG+AGG | - | chr1.1:8573503-8573522 | None:intergenic | 35.0% | |
| ATGCAAAATCAGTTGGAAGA+AGG | - | chr1.1:8574522-8574541 | None:intergenic | 35.0% | |
| CAAAGTTGGAAAAGACAAAC+AGG | + | chr1.1:8572693-8572712 | MS.gene60284:CDS | 35.0% | |
| CACAGCATTTGGTATAAATG+AGG | - | chr1.1:8575927-8575946 | None:intergenic | 35.0% | |
| CACCTTTGGTATCATTATAC+AGG | + | chr1.1:8573722-8573741 | MS.gene60284:intron | 35.0% | |
| CAGCATTTGGTATAAATGAG+GGG | - | chr1.1:8575925-8575944 | None:intergenic | 35.0% | |
| CAGTTAATAATTATCACCCG+TGG | - | chr1.1:8575534-8575553 | None:intergenic | 35.0% | |
| CATGCTAAACAGGCAATTAT+AGG | - | chr1.1:8574384-8574403 | None:intergenic | 35.0% | |
| CTAATCAGTAGATGGTTTAG+GGG | + | chr1.1:8575579-8575598 | MS.gene60284:intron | 35.0% | |
| CTCTAATCAGTAGATGGTTT+AGG | + | chr1.1:8575577-8575596 | MS.gene60284:intron | 35.0% | |
| CTGTATAATGATACCAAAGG+TGG | - | chr1.1:8573724-8573743 | None:intergenic | 35.0% | |
| CTGTATTTACAGTAACATGG+GGG | - | chr1.1:8572336-8572355 | None:intergenic | 35.0% | |
| CTTCCTAAGCTTTCTAATCT+CGG | - | chr1.1:8573974-8573993 | None:intergenic | 35.0% | |
| CTTCTCCTTGAACTTTATCA+AGG | - | chr1.1:8573438-8573457 | None:intergenic | 35.0% | |
| GAGTCTATCCAATATCCATT+GGG | + | chr1.1:8574989-8575008 | MS.gene60284:intron | 35.0% | |
| GATATCAACTATTCTCACCT+TGG | - | chr1.1:8573873-8573892 | None:intergenic | 35.0% | |
| GGATTTGTCTCATCTAATGT+GGG | - | chr1.1:8575088-8575107 | None:intergenic | 35.0% | |
| TAAGGTTGAGGAAAAGATTC+AGG | + | chr1.1:8573811-8573830 | MS.gene60284:CDS | 35.0% | |
| TAATCAGTAGATGGTTTAGG+GGG | + | chr1.1:8575580-8575599 | MS.gene60284:intron | 35.0% | |
| TCAACAAATTCAGAGTCTGA+TGG | + | chr1.1:8576113-8576132 | MS.gene60284:CDS | 35.0% | |
| TCTACATTAGTATTGTCCAG+AGG | - | chr1.1:8576046-8576065 | None:intergenic | 35.0% | |
| TCTCCTTGAACTTTATCAAG+GGG | - | chr1.1:8573436-8573455 | None:intergenic | 35.0% | |
| TGCAAAATCAGTTGGAAGAA+GGG | - | chr1.1:8574521-8574540 | None:intergenic | 35.0% | |
| TGGATTTGTCTCATCTAATG+TGG | - | chr1.1:8575089-8575108 | None:intergenic | 35.0% | |
| TGTAACAACAGAGTTTACCT+TGG | - | chr1.1:8572815-8572834 | None:intergenic | 35.0% | |
| TTCACAAGACATTCTTCACT+TGG | - | chr1.1:8576458-8576477 | None:intergenic | 35.0% | |
| TTGGTGAAAAACAGCAAAGT+TGG | + | chr1.1:8572679-8572698 | MS.gene60284:CDS | 35.0% | |
| ! | ACTTTTATAGGAGAGTCAAG+AGG | + | chr1.1:8573948-8573967 | MS.gene60284:intron | 35.0% |
| ! | CTAAACCATCTACTGATTAG+AGG | - | chr1.1:8575579-8575598 | None:intergenic | 35.0% |
| ! | GGTAATGACAGGGTATTTAT+GGG | - | chr1.1:8574596-8574615 | None:intergenic | 35.0% |
| ! | GGTTTTTAATAGGCTGTCTT+GGG | - | chr1.1:8572762-8572781 | None:intergenic | 35.0% |
| ! | TGGTAATGACAGGGTATTTA+TGG | - | chr1.1:8574597-8574616 | None:intergenic | 35.0% |
| !! | ATCAAAGGTTTGGTAATGAC+AGG | - | chr1.1:8574607-8574626 | None:intergenic | 35.0% |
| !! | ATTTGCTTTGTTCTAGGACA+AGG | + | chr1.1:8572552-8572571 | MS.gene60284:intron | 35.0% |
| !! | CTTACAAGCCGATTTTGTTA+GGG | + | chr1.1:8574929-8574948 | MS.gene60284:intron | 35.0% |
| !! | GATGGGTTGAGAATAGTTTA+GGG | - | chr1.1:8573026-8573045 | None:intergenic | 35.0% |
| !! | TCAAAGGTTTGGTAATGACA+GGG | - | chr1.1:8574606-8574625 | None:intergenic | 35.0% |
| !! | TGATGGGTTGAGAATAGTTT+AGG | - | chr1.1:8573027-8573046 | None:intergenic | 35.0% |
| !!! | CAAGGTACTGTTTTCTTCAT+TGG | - | chr1.1:8576384-8576403 | None:intergenic | 35.0% |
| !!! | TCAGTGTTGGTACTTTTAAG+AGG | - | chr1.1:8573592-8573611 | None:intergenic | 35.0% |
| AACTGAGGGACTAACTTGAT+GGG | - | chr1.1:8573043-8573062 | None:intergenic | 40.0% | |
| AACTGGAAACTCGTCTATGA+AGG | + | chr1.1:8572411-8572430 | MS.gene60284:CDS | 40.0% | |
| AATCAGTAGATGGTTTAGGG+GGG | + | chr1.1:8575581-8575600 | MS.gene60284:intron | 40.0% | |
| ACACCACATCAAGAACTTTG+TGG | - | chr1.1:8575616-8575635 | None:intergenic | 40.0% | |
| ACAGAAACTGTTGTTCCAGA+TGG | + | chr1.1:8572352-8572371 | MS.gene60284:CDS | 40.0% | |
| AGCTGCTGAATTGGAAGAAT+TGG | - | chr1.1:8576282-8576301 | None:intergenic | 40.0% | |
| AGTATCTTTCTTTGTTGGCC+TGG | - | chr1.1:8576315-8576334 | None:intergenic | 40.0% | |
| ATATAACGCGCAGCAATCAA+AGG | - | chr1.1:8574622-8574641 | None:intergenic | 40.0% | |
| CAAATCTGAATGGCTCAGTT+TGG | - | chr1.1:8575437-8575456 | None:intergenic | 40.0% | |
| CTAACCCTCTAATCAGTAGA+TGG | + | chr1.1:8575571-8575590 | MS.gene60284:intron | 40.0% | |
| CTAGCTTATCCAAAGCTACA+GGG | + | chr1.1:8576333-8576352 | MS.gene60284:CDS | 40.0% | |
| GCAAAATCAGTTGGAAGAAG+GGG | - | chr1.1:8574520-8574539 | None:intergenic | 40.0% | |
| TAACTGAGGGACTAACTTGA+TGG | - | chr1.1:8573044-8573063 | None:intergenic | 40.0% | |
| TAGCTTATCCAAAGCTACAG+GGG | + | chr1.1:8576334-8576353 | MS.gene60284:CDS | 40.0% | |
| TCACAAGGAAACTCCACTAA+AGG | + | chr1.1:8576188-8576207 | MS.gene60284:CDS | 40.0% | |
| TCAGCACATGCAAAATCAGT+TGG | - | chr1.1:8574529-8574548 | None:intergenic | 40.0% | |
| TCCATTGCCAACTTTCTATC+AGG | + | chr1.1:8574014-8574033 | MS.gene60284:CDS | 40.0% | |
| TCCTGAGAAAACCTTCAACT+TGG | + | chr1.1:8572941-8572960 | MS.gene60284:intron | 40.0% | |
| TCCTGATAGAAAGTTGGCAA+TGG | - | chr1.1:8574018-8574037 | None:intergenic | 40.0% | |
| TCGTCTATGAAGGAAATCGA+AGG | + | chr1.1:8572421-8572440 | MS.gene60284:CDS | 40.0% | |
| TCTTCACTTGGCTTATCTGA+AGG | - | chr1.1:8576446-8576465 | None:intergenic | 40.0% | |
| TCTTGTGAATGGTGACATAG+TGG | + | chr1.1:8576469-8576488 | MS.gene60284:CDS | 40.0% | |
| TGAGGAAAAGATTCAGGCAA+AGG | + | chr1.1:8573817-8573836 | MS.gene60284:CDS | 40.0% | |
| TTTGGTATAAATGAGGGGAG+CGG | - | chr1.1:8575920-8575939 | None:intergenic | 40.0% | |
| ! | ACTAGCTTATCCAAAGCTAC+AGG | + | chr1.1:8576332-8576351 | MS.gene60284:CDS | 40.0% |
| ! | ATCAATCAGTTGGAAAGCAC+TGG | + | chr1.1:8572388-8572407 | MS.gene60284:CDS | 40.0% |
| ! | CGGTTTTTAATAGGCTGTCT+TGG | - | chr1.1:8572763-8572782 | None:intergenic | 40.0% |
| ! | GAACAGTCAAGAGCACAAAA+GGG | + | chr1.1:8572598-8572617 | MS.gene60284:CDS | 40.0% |
| ! | GGTACTGTTTTCTTCATTGG+CGG | - | chr1.1:8576381-8576400 | None:intergenic | 40.0% |
| ! | GTACACTTTGTTTCCACCTT+TGG | + | chr1.1:8573708-8573727 | MS.gene60284:intron | 40.0% |
| ! | GTTTACCTCTCTCCTTTTCT+CGG | - | chr1.1:8573683-8573702 | None:intergenic | 40.0% |
| ! | TAGCTTGCAAGCAAAATCCA+AGG | + | chr1.1:8573853-8573872 | MS.gene60284:CDS | 40.0% |
| ! | TATGGATTCAGTTTCAGGTG+CGG | + | chr1.1:8573649-8573668 | MS.gene60284:CDS | 40.0% |
| ! | TCTTTTCCTCAACCTTAGTG+AGG | - | chr1.1:8573808-8573827 | None:intergenic | 40.0% |
| ! | TTCGTAGTGGCTTCTTTTGA+TGG | - | chr1.1:8576226-8576245 | None:intergenic | 40.0% |
| !! | ACCAAGTTGAAGGTTTTCTC+AGG | - | chr1.1:8572945-8572964 | None:intergenic | 40.0% |
| !! | CCTAACAAAATCGGCTTGTA+AGG | - | chr1.1:8574931-8574950 | None:intergenic | 40.0% |
| !! | CCTTACAAGCCGATTTTGTT+AGG | + | chr1.1:8574928-8574947 | MS.gene60284:intron | 40.0% |
| !! | CTTGATGATGTCCACCAAAA+CGG | + | chr1.1:8572256-8572275 | MS.gene60284:CDS | 40.0% |
| AAAGATTCAGGCAAAGGAGG+AGG | + | chr1.1:8573823-8573842 | MS.gene60284:CDS | 45.0% | |
| AAGTATACACACGCAGTCAG+AGG | - | chr1.1:8574129-8574148 | None:intergenic | 45.0% | |
| ACATCATCAAGTCCATCAGC+AGG | - | chr1.1:8572247-8572266 | None:intergenic | 45.0% | |
| AGAAGGGGAAGTGGAAAACA+AGG | - | chr1.1:8574505-8574524 | None:intergenic | 45.0% | |
| AGGATCAATGCCCAGATAAC+AGG | - | chr1.1:8575857-8575876 | None:intergenic | 45.0% | |
| AGGCCGAGATTAGAAAGCTT+AGG | + | chr1.1:8573968-8573987 | MS.gene60284:CDS | 45.0% | |
| AGGTTTGGCATCTTCAGTGT+TGG | - | chr1.1:8573605-8573624 | None:intergenic | 45.0% | |
| ATAGTCCTCACCTTACAAGC+TGG | + | chr1.1:8575131-8575150 | MS.gene60284:intron | 45.0% | |
| ATATCCAGTCCTTGGCACAA+GGG | + | chr1.1:8575047-8575066 | MS.gene60284:intron | 45.0% | |
| ATTAATCCCTTGCCTGCTGA+TGG | + | chr1.1:8572232-8572251 | MS.gene60284:CDS | 45.0% | |
| CAAACTTGCATTAACACCGC+TGG | - | chr1.1:8572662-8572681 | None:intergenic | 45.0% | |
| CACGACGAACCTTCTAATTC+TGG | + | chr1.1:8572283-8572302 | MS.gene60284:CDS | 45.0% | |
| CCATCCTCTCCAGAATTAGA+AGG | - | chr1.1:8572295-8572314 | None:intergenic | 45.0% | |
| CGAAGGATCGAATGACAACT+TGG | + | chr1.1:8572438-8572457 | MS.gene60284:CDS | 45.0% | |
| CGACCACAAAGTTCTTGATG+TGG | + | chr1.1:8575610-8575629 | MS.gene60284:intron | 45.0% | |
| GGAAAAGATTCAGGCAAAGG+AGG | + | chr1.1:8573820-8573839 | MS.gene60284:CDS | 45.0% | |
| GGACCCCTTGATAAAGTTCA+AGG | + | chr1.1:8573430-8573449 | MS.gene60284:CDS | 45.0% | |
| GTGACTTCTTGATTGCATGC+AGG | + | chr1.1:8574169-8574188 | MS.gene60284:intron | 45.0% | |
| GTGGGGACACTTCCAAATTA+TGG | + | chr1.1:8573631-8573650 | MS.gene60284:CDS | 45.0% | |
| TCAGCAGGCAAGGGATTAAT+TGG | - | chr1.1:8572232-8572251 | None:intergenic | 45.0% | |
| TGCAAGCAAACACACACAGA+GGG | - | chr1.1:8574084-8574103 | None:intergenic | 45.0% | |
| TGCATTTGCTTGCTCAAGTG+TGG | + | chr1.1:8574641-8574660 | MS.gene60284:intron | 45.0% | |
| TGCTGTGTGAAAGTTCTTGG+TGG | + | chr1.1:8575940-8575959 | MS.gene60284:intron | 45.0% | |
| TGGTCCTTTCAGAAGCAAGT+CGG | - | chr1.1:8576262-8576281 | None:intergenic | 45.0% | |
| TGTTGCTCTGCCTCATAATG+CGG | + | chr1.1:8576418-8576437 | MS.gene60284:CDS | 45.0% | |
| TTGTGAGCAGTTCCTCACTA+AGG | + | chr1.1:8573793-8573812 | MS.gene60284:intron | 45.0% | |
| TTTCTCTTCCCCTGTAGCTT+TGG | - | chr1.1:8576345-8576364 | None:intergenic | 45.0% | |
| ! | AGGCAATTATAGGAGCACGT+GGG | - | chr1.1:8574374-8574393 | None:intergenic | 45.0% |
| ! | CAGCGGTGTTAATGCAAGTT+TGG | + | chr1.1:8572660-8572679 | MS.gene60284:CDS | 45.0% |
| ! | CCTTCTAATTCTGGAGAGGA+TGG | + | chr1.1:8572292-8572311 | MS.gene60284:CDS | 45.0% |
| ! | CGAACCTTCTAATTCTGGAG+AGG | + | chr1.1:8572288-8572307 | MS.gene60284:CDS | 45.0% |
| ! | GGAACAGTCAAGAGCACAAA+AGG | + | chr1.1:8572597-8572616 | MS.gene60284:CDS | 45.0% |
| ! | GGGGATTTTGCTCTTGTAGT+TGG | - | chr1.1:8576071-8576090 | None:intergenic | 45.0% |
| ! | TGCTCTAGATATCCAGTCCT+TGG | + | chr1.1:8575039-8575058 | MS.gene60284:intron | 45.0% |
| ! | TTCTTTGTTGGCCTGGATGT+AGG | - | chr1.1:8576308-8576327 | None:intergenic | 45.0% |
| !! | ACCTTACAAGCTGGTTTGCA+AGG | + | chr1.1:8575140-8575159 | MS.gene60284:intron | 45.0% |
| !! | AGAAGTGCCATTTGAGACAG+CGG | - | chr1.1:8572725-8572744 | None:intergenic | 45.0% |
| !! | CAAAATCGGCTTGTAAGGTG+AGG | - | chr1.1:8574926-8574945 | None:intergenic | 45.0% |
| !! | CCTTACAAGCTGGTTTGCAA+GGG | + | chr1.1:8575141-8575160 | MS.gene60284:intron | 45.0% |
| !! | CTGAACGAGAAAGTGTCACA+AGG | + | chr1.1:8576173-8576192 | MS.gene60284:CDS | 45.0% |
| !! | AATCATAATTAAAAAAAATA+AGG | - | chr1.1:8575368-8575387 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTAATTATGATT+TGG | + | chr1.1:8575368-8575387 | MS.gene60284:intron | 5.0% |
| ACATCAGAAGACGCTGCTTC+AGG | - | chr1.1:8573275-8573294 | None:intergenic | 50.0% | |
| ACCTTCTTCAGCTCCACCTT+AGG | - | chr1.1:8574051-8574070 | None:intergenic | 50.0% | |
| ACGCGCAGCAATCAAAGGTT+TGG | - | chr1.1:8574617-8574636 | None:intergenic | 50.0% | |
| AGAAGCAAGTCGGGTAGGAA+GGG | - | chr1.1:8576252-8576271 | None:intergenic | 50.0% | |
| AGAGCAAAATCCCCCAAGCT+TGG | + | chr1.1:8576077-8576096 | MS.gene60284:CDS | 50.0% | |
| AGTCTTCTTCCGACCAAGCT+TGG | - | chr1.1:8576093-8576112 | None:intergenic | 50.0% | |
| ATCAAGTCCATCAGCAGGCA+AGG | - | chr1.1:8572242-8572261 | None:intergenic | 50.0% | |
| CAAAATCCCCCAAGCTTGGT+CGG | + | chr1.1:8576081-8576100 | MS.gene60284:CDS | 50.0% | |
| CCCTTGCAAACCAGCTTGTA+AGG | - | chr1.1:8575144-8575163 | None:intergenic | 50.0% | |
| CCTGCCGATCATTGAATGAG+CGG | - | chr1.1:8572783-8572802 | None:intergenic | 50.0% | |
| CTTTCAGAAGCAAGTCGGGT+AGG | - | chr1.1:8576257-8576276 | None:intergenic | 50.0% | |
| GATATCCAGTCCTTGGCACA+AGG | + | chr1.1:8575046-8575065 | MS.gene60284:intron | 50.0% | |
| GCAAACCAGCTTGTAAGGTG+AGG | - | chr1.1:8575139-8575158 | None:intergenic | 50.0% | |
| GCAGGCTCCTGATAGAAAGT+TGG | - | chr1.1:8574024-8574043 | None:intergenic | 50.0% | |
| GCAGTTCCTCACTAAGGTTG+AGG | + | chr1.1:8573799-8573818 | MS.gene60284:intron | 50.0% | |
| GCATCATCCGCTGTCTCAAA+TGG | + | chr1.1:8572715-8572734 | MS.gene60284:CDS | 50.0% | |
| GGTCCTTTCAGAAGCAAGTC+GGG | - | chr1.1:8576261-8576280 | None:intergenic | 50.0% | |
| GTAGGAAGGGACTTTCGTAG+TGG | - | chr1.1:8576239-8576258 | None:intergenic | 50.0% | |
| GTCTTCTTCCGACCAAGCTT+GGG | - | chr1.1:8576092-8576111 | None:intergenic | 50.0% | |
| GTGCAAGCAAACACACACAG+AGG | - | chr1.1:8574085-8574104 | None:intergenic | 50.0% | |
| TCAAGTCCATCAGCAGGCAA+GGG | - | chr1.1:8572241-8572260 | None:intergenic | 50.0% | |
| TCAGTTGGAAGAAGGGGAAG+TGG | - | chr1.1:8574514-8574533 | None:intergenic | 50.0% | |
| TCCTAAGGTGGAGCTGAAGA+AGG | + | chr1.1:8574047-8574066 | MS.gene60284:CDS | 50.0% | |
| TCTGAAGGAGCCGCATTATG+AGG | - | chr1.1:8576431-8576450 | None:intergenic | 50.0% | |
| TCTTCTTCCGACCAAGCTTG+GGG | - | chr1.1:8576091-8576110 | None:intergenic | 50.0% | |
| TCTTGTGACAACACGAGCTG+AGG | - | chr1.1:8576506-8576525 | None:intergenic | 50.0% | |
| TGTAGGTGCAGCTGCTGAAT+TGG | - | chr1.1:8576291-8576310 | None:intergenic | 50.0% | |
| TGTGCTCTTGACTGTTCCGT+TGG | - | chr1.1:8572595-8572614 | None:intergenic | 50.0% | |
| TTCTTCAGCTCCACCTTAGG+AGG | - | chr1.1:8574048-8574067 | None:intergenic | 50.0% | |
| ! | CAGGCAATTATAGGAGCACG+TGG | - | chr1.1:8574375-8574394 | None:intergenic | 50.0% |
| ! | CTACCCGACTTGCTTCTGAA+AGG | + | chr1.1:8576255-8576274 | MS.gene60284:CDS | 50.0% |
| ! | CTGGTTTGCAAGGGTTGAGT+AGG | + | chr1.1:8575150-8575169 | MS.gene60284:intron | 50.0% |
| ! | GTTCGTCGTGAACACCGTTT+TGG | - | chr1.1:8572273-8572292 | None:intergenic | 50.0% |
| ! | TATCTAGAGCATGACCCGAG+TGG | - | chr1.1:8575030-8575049 | None:intergenic | 50.0% |
| !! | AAGGTTGGTGGTAGTTCCAG+CGG | + | chr1.1:8572643-8572662 | MS.gene60284:CDS | 50.0% |
| !! | CAGTTGGAAAGCACTGGAAC+TGG | + | chr1.1:8572394-8572413 | MS.gene60284:CDS | 50.0% |
| !! | TCAGGCTTTGAAGGTTGCTG+AGG | - | chr1.1:8573257-8573276 | None:intergenic | 50.0% |
| AATGCACCTCCCTTGTGCCA+AGG | - | chr1.1:8575059-8575078 | None:intergenic | 55.0% | |
| ACGAGCCGAGAAAAGGAGAG+AGG | + | chr1.1:8573675-8573694 | MS.gene60284:CDS | 55.0% | |
| AGATGCCAAACCTCGCAGAG+TGG | + | chr1.1:8573612-8573631 | MS.gene60284:CDS | 55.0% | |
| ATGCCAAACCTCGCAGAGTG+GGG | + | chr1.1:8573614-8573633 | MS.gene60284:CDS | 55.0% | |
| CAGAAGCAAGTCGGGTAGGA+AGG | - | chr1.1:8576253-8576272 | None:intergenic | 55.0% | |
| CCGCTCATTCAATGATCGGC+AGG | + | chr1.1:8572780-8572799 | MS.gene60284:CDS | 55.0% | |
| CTTCTTCCGACCAAGCTTGG+GGG | - | chr1.1:8576090-8576109 | None:intergenic | 55.0% | |
| GATGCCAAACCTCGCAGAGT+GGG | + | chr1.1:8573613-8573632 | MS.gene60284:CDS | 55.0% | |
| GCGGGAGACCCAATGGATAT+TGG | - | chr1.1:8575000-8575019 | None:intergenic | 55.0% | |
| GGTAGCTGCAGTTCTCGACA+AGG | + | chr1.1:8576140-8576159 | MS.gene60284:CDS | 55.0% | |
| GGTATAAATGAGGGGAGCGG+AGG | - | chr1.1:8575917-8575936 | None:intergenic | 55.0% | |
| TCCATTGGGTCTCCCGCTAT+CGG | + | chr1.1:8575003-8575022 | MS.gene60284:intron | 55.0% | |
| ! | CGTCGTGAACACCGTTTTGG+TGG | - | chr1.1:8572270-8572289 | None:intergenic | 55.0% |
| ! | GACGCTGCTTCAGGCTTTGA+AGG | - | chr1.1:8573266-8573285 | None:intergenic | 55.0% |
| ACCTCCCTTGTGCCAAGGAC+TGG | - | chr1.1:8575054-8575073 | None:intergenic | 60.0% | |
| AGCTCCACCTTAGGAGGAGC+AGG | - | chr1.1:8574042-8574061 | None:intergenic | 60.0% | |
| CAGCAGCTGCACCTACATCC+AGG | + | chr1.1:8576294-8576313 | MS.gene60284:CDS | 60.0% | |
| CCATTGGGTCTCCCGCTATC+GGG | + | chr1.1:8575004-8575023 | MS.gene60284:intron | 60.0% | |
| GCGGTGAACGAGCCGAGAAA+AGG | + | chr1.1:8573668-8573687 | MS.gene60284:CDS | 60.0% | |
| TCAGGAGCCTGCTCCTCCTA+AGG | + | chr1.1:8574032-8574051 | MS.gene60284:CDS | 60.0% | |
| TCCAGTCCTTGGCACAAGGG+AGG | + | chr1.1:8575050-8575069 | MS.gene60284:intron | 60.0% | |
| TCGGCAGGCTCAACTGTCCA+AGG | + | chr1.1:8572795-8572814 | MS.gene60284:CDS | 60.0% | |
| TGTCCCCACTCTGCGAGGTT+TGG | - | chr1.1:8573620-8573639 | None:intergenic | 60.0% | |
| GGAGCCTGCTCCTCCTAAGG+TGG | + | chr1.1:8574035-8574054 | MS.gene60284:CDS | 65.0% | |
| TCTCCCGCTATCGGGCCACT+CGG | + | chr1.1:8575012-8575031 | MS.gene60284:intron | 65.0% | |
| TGACCCGAGTGGCCCGATAG+CGG | - | chr1.1:8575019-8575038 | None:intergenic | 65.0% | |
| !! | CCCGATAGCGGGAGACCCAA+TGG | - | chr1.1:8575007-8575026 | None:intergenic | 65.0% |
| !! | GGAAGTGTCCCCACTCTGCG+AGG | - | chr1.1:8573625-8573644 | None:intergenic | 65.0% |
| CTCCCGCTATCGGGCCACTC+GGG | + | chr1.1:8575013-8575032 | MS.gene60284:intron | 70.0% | |
| GACCCGAGTGGCCCGATAGC+GGG | - | chr1.1:8575018-8575037 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 8572220 | 8576547 | 8572220 | ID=MS.gene60284 |
| chr1.1 | mRNA | 8572220 | 8576547 | 8572220 | ID=MS.gene60284.t1;Parent=MS.gene60284 |
| chr1.1 | exon | 8572220 | 8572486 | 8572220 | ID=MS.gene60284.t1.exon1;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8572220 | 8572486 | 8572220 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8572568 | 8572816 | 8572568 | ID=MS.gene60284.t1.exon2;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8572568 | 8572816 | 8572568 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8573260 | 8573300 | 8573260 | ID=MS.gene60284.t1.exon3;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8573260 | 8573300 | 8573260 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8573399 | 8573470 | 8573399 | ID=MS.gene60284.t1.exon4;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8573399 | 8573470 | 8573399 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8573600 | 8573696 | 8573600 | ID=MS.gene60284.t1.exon5;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8573600 | 8573696 | 8573600 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8573803 | 8573874 | 8573803 | ID=MS.gene60284.t1.exon6;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8573803 | 8573874 | 8573803 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8573958 | 8574068 | 8573958 | ID=MS.gene60284.t1.exon7;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8573958 | 8574068 | 8573958 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| chr1.1 | exon | 8576065 | 8576547 | 8576065 | ID=MS.gene60284.t1.exon8;Parent=MS.gene60284.t1 |
| chr1.1 | CDS | 8576065 | 8576547 | 8576065 | ID=cds.MS.gene60284.t1;Parent=MS.gene60284.t1 |
| Gene Sequence |
| Protein sequence |
