Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61699.t1 | XP_003588767.2 | 91.1 | 463 | 37 | 2 | 1 | 463 | 1 | 459 | 4.50E-185 | 657.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61699.t1 | Q94C48 | 34.4 | 360 | 213 | 10 | 105 | 447 | 83 | 436 | 3.5e-29 | 131.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61699.t1 | G7I707 | 91.1 | 463 | 37 | 2 | 1 | 463 | 1 | 459 | 3.3e-185 | 657.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61699 | MS.gene014835 | PPI |
| MS.gene61699 | MS.gene60284 | PPI |
| MS.gene61699 | MS.gene32634 | PPI |
| MS.gene61699 | MS.gene67065 | PPI |
| MS.gene67065 | MS.gene61699 | PPI |
| MS.gene61699 | MS.gene33200 | PPI |
| MS.gene014835 | MS.gene61699 | PPI |
| MS.gene61699 | MS.gene015987 | PPI |
| MS.gene015987 | MS.gene61699 | PPI |
| MS.gene61699 | MS.gene072889 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61699.t1 | MTR_1g012530 | 91.361 | 463 | 36 | 2 | 1 | 463 | 1 | 459 | 0.0 | 815 |
| MS.gene61699.t1 | MTR_1g012530 | 89.028 | 319 | 34 | 1 | 1 | 319 | 1 | 318 | 0.0 | 545 |
| MS.gene61699.t1 | MTR_3g107050 | 51.368 | 475 | 190 | 10 | 2 | 459 | 1 | 451 | 1.17e-135 | 398 |
| MS.gene61699.t1 | MTR_1g055085 | 60.145 | 138 | 52 | 2 | 228 | 365 | 233 | 367 | 9.63e-40 | 149 |
| MS.gene61699.t1 | MTR_7g106750 | 55.034 | 149 | 45 | 5 | 228 | 373 | 238 | 367 | 2.80e-36 | 139 |
| MS.gene61699.t1 | MTR_1g075310 | 48.092 | 131 | 63 | 2 | 230 | 355 | 217 | 347 | 3.44e-29 | 118 |
| MS.gene61699.t1 | MTR_1g080690 | 48.062 | 129 | 55 | 3 | 230 | 346 | 195 | 323 | 4.30e-25 | 106 |
| MS.gene61699.t1 | MTR_7g115310 | 48.031 | 127 | 62 | 1 | 221 | 347 | 207 | 329 | 6.63e-22 | 99.8 |
| MS.gene61699.t1 | MTR_6g022230 | 44.444 | 90 | 45 | 3 | 229 | 316 | 416 | 502 | 8.96e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61699.t1 | AT4G32330 | 43.081 | 383 | 178 | 12 | 2 | 375 | 1 | 352 | 2.67e-75 | 243 |
| MS.gene61699.t1 | AT4G32330 | 42.969 | 384 | 178 | 13 | 2 | 375 | 1 | 353 | 6.28e-74 | 239 |
| MS.gene61699.t1 | AT4G32330 | 42.969 | 384 | 178 | 13 | 2 | 375 | 1 | 353 | 6.28e-74 | 239 |
| MS.gene61699.t1 | AT4G32330 | 42.969 | 384 | 178 | 13 | 2 | 375 | 1 | 353 | 6.28e-74 | 239 |
| MS.gene61699.t1 | AT2G25480 | 48.864 | 264 | 124 | 6 | 143 | 403 | 99 | 354 | 3.98e-63 | 210 |
| MS.gene61699.t1 | AT2G25480 | 48.864 | 264 | 125 | 6 | 143 | 403 | 99 | 355 | 5.80e-63 | 209 |
| MS.gene61699.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 9.97e-40 | 148 |
| MS.gene61699.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 9.97e-40 | 148 |
| MS.gene61699.t1 | AT2G35880 | 70.476 | 105 | 30 | 1 | 219 | 323 | 236 | 339 | 9.97e-40 | 148 |
| MS.gene61699.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 196 | 283 | 3.80e-28 | 114 |
| MS.gene61699.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 195 | 282 | 3.89e-28 | 114 |
| MS.gene61699.t1 | AT3G23090 | 65.909 | 88 | 30 | 0 | 230 | 317 | 231 | 318 | 7.47e-28 | 114 |
| MS.gene61699.t1 | AT3G23090 | 63.043 | 92 | 30 | 1 | 230 | 317 | 195 | 286 | 2.47e-27 | 112 |
| MS.gene61699.t1 | AT3G23090 | 63.043 | 92 | 30 | 1 | 230 | 317 | 231 | 322 | 4.20e-27 | 112 |
| MS.gene61699.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 84 | 202 | 7.51e-24 | 99.4 |
| MS.gene61699.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 84 | 202 | 7.51e-24 | 99.4 |
| MS.gene61699.t1 | AT5G28646 | 47.154 | 123 | 59 | 2 | 222 | 342 | 80 | 198 | 7.99e-24 | 99.0 |
| MS.gene61699.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 123 | 212 | 1.09e-22 | 98.2 |
| MS.gene61699.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 122 | 211 | 1.10e-22 | 98.2 |
| MS.gene61699.t1 | AT3G04630 | 54.444 | 90 | 39 | 1 | 227 | 314 | 127 | 216 | 1.15e-22 | 98.2 |
| MS.gene61699.t1 | AT1G54460 | 45.378 | 119 | 60 | 2 | 206 | 323 | 145 | 259 | 1.21e-21 | 96.3 |
| MS.gene61699.t1 | AT1G70950 | 50.000 | 86 | 39 | 1 | 229 | 310 | 328 | 413 | 5.83e-19 | 89.7 |
Find 114 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATGGATTCAGTTTC+AGG | 0.129280 | 1.3:+8998828 | MS.gene61699:CDS |
| CTGAAACTGAATCCATAATT+TGG | 0.234073 | 1.3:-8998827 | None:intergenic |
| GTGGGGACACTTCCAAATTA+TGG | 0.282695 | 1.3:+8998815 | MS.gene61699:CDS |
| TCAGCAGGCAAGGGATTAAT+TGG | 0.284030 | 1.3:-8997413 | None:intergenic |
| CACGACGAACCTTCTAATTC+TGG | 0.301211 | 1.3:+8997467 | MS.gene61699:CDS |
| TCCATTGCCAACTTTCTATC+AGG | 0.308595 | 1.3:+8999198 | MS.gene61699:CDS |
| TTTCTCTTCCCCTGTAGCTT+TGG | 0.321630 | 1.3:-9001525 | None:intergenic |
| GTCTTCTTCCGACCAAGCTT+GGG | 0.328574 | 1.3:-9001272 | None:intergenic |
| AAGCTAGTATCTTTCTTTGT+TGG | 0.330091 | 1.3:-9001500 | None:intergenic |
| ATGGAGTTGCTTTAAAAGTT+AGG | 0.333174 | 1.3:-8999180 | None:intergenic |
| CAGCGGTGTTAATGCAAGTT+TGG | 0.358129 | 1.3:+8997844 | MS.gene61699:CDS |
| ACATCAGAAGACGCTGCTTC+AGG | 0.363490 | 1.3:-8998456 | None:intergenic |
| GTTCGTCGTGAACACCGTTT+TGG | 0.381078 | 1.3:-8997454 | None:intergenic |
| GACGCTGCTTCAGGCTTTGA+AGG | 0.389307 | 1.3:-8998447 | None:intergenic |
| CTTCTCCTTGAACTTTATCA+AGG | 0.390003 | 1.3:-8998619 | None:intergenic |
| TAAGGTTGAGGAAAAGATTC+AGG | 0.390503 | 1.3:+8998995 | MS.gene61699:CDS |
| AGCTGCTGAATTGGAAGAAT+TGG | 0.396114 | 1.3:-9001462 | None:intergenic |
| TGTAGGTGCAGCTGCTGAAT+TGG | 0.397011 | 1.3:-9001471 | None:intergenic |
| AGTCTTCTTCCGACCAAGCT+TGG | 0.401334 | 1.3:-9001273 | None:intergenic |
| CAGTTGGAAAGCACTGGAAC+TGG | 0.409681 | 1.3:+8997578 | MS.gene61699:CDS |
| GGAACAGTCAAGAGCACAAA+AGG | 0.414883 | 1.3:+8997781 | MS.gene61699:CDS |
| CTTCCTAAGCTTTCTAATCT+CGG | 0.418203 | 1.3:-8999155 | None:intergenic |
| AGTATCTTTCTTTGTTGGCC+TGG | 0.422922 | 1.3:-9001495 | None:intergenic |
| TTCTTTGTTGGCCTGGATGT+AGG | 0.428959 | 1.3:-9001488 | None:intergenic |
| TGTCCCCACTCTGCGAGGTT+TGG | 0.435993 | 1.3:-8998801 | None:intergenic |
| ACTAGCTTATCCAAAGCTAC+AGG | 0.441373 | 1.3:+9001515 | MS.gene61699:CDS |
| AGCTCCACCTTAGGAGGAGC+AGG | 0.446075 | 1.3:-8999223 | None:intergenic |
| CCATCCTCTCCAGAATTAGA+AGG | 0.447912 | 1.3:-8997476 | None:intergenic |
| TTTGCATTCTTATTCTTGAC+AGG | 0.449148 | 1.3:-8997806 | None:intergenic |
| GACAATGGCATCTCCTTTAG+TGG | 0.454757 | 1.3:-9001384 | None:intergenic |
| ACCTTCTTCAGCTCCACCTT+AGG | 0.458299 | 1.3:-8999232 | None:intergenic |
| CAAAGTTGGAAAAGACAAAC+AGG | 0.463790 | 1.3:+8997877 | MS.gene61699:CDS |
| TTGTGAGCAGTTCCTCACTA+AGG | 0.463940 | 1.3:+8998977 | MS.gene61699:intron |
| TTCTGAAAATATCAATCAGT+TGG | 0.465513 | 1.3:+8997562 | MS.gene61699:CDS |
| TGTGCTCTTGACTGTTCCGT+TGG | 0.466042 | 1.3:-8997776 | None:intergenic |
| CAATAATTTGATCGTTTCAA+AGG | 0.466984 | 1.3:+8997649 | MS.gene61699:CDS |
| AATTCAGAGTCTGATGGAAA+TGG | 0.469317 | 1.3:+9001302 | MS.gene61699:CDS |
| TCAGGAGCCTGCTCCTCCTA+AGG | 0.477024 | 1.3:+8999216 | MS.gene61699:CDS |
| TTCACAAGACATTCTTCACT+TGG | 0.478405 | 1.3:-9001638 | None:intergenic |
| TTCTCCTTGAACTTTATCAA+GGG | 0.481497 | 1.3:-8998618 | None:intergenic |
| GGTCCTTTCAGAAGCAAGTC+GGG | 0.481741 | 1.3:-9001441 | None:intergenic |
| TCTGAAGGAGCCGCATTATG+AGG | 0.482661 | 1.3:-9001611 | None:intergenic |
| GCGGTGAACGAGCCGAGAAA+AGG | 0.484677 | 1.3:+8998852 | MS.gene61699:CDS |
| GCATCATCCGCTGTCTCAAA+TGG | 0.487290 | 1.3:+8997899 | MS.gene61699:CDS |
| ATCAAGTCCATCAGCAGGCA+AGG | 0.494390 | 1.3:-8997423 | None:intergenic |
| ATTAATCCCTTGCCTGCTGA+TGG | 0.494725 | 1.3:+8997416 | MS.gene61699:CDS |
| TTCTTCAGCTCCACCTTAGG+AGG | 0.495466 | 1.3:-8999229 | None:intergenic |
| ATCAATCAGTTGGAAAGCAC+TGG | 0.499209 | 1.3:+8997572 | MS.gene61699:CDS |
| CCGCTCATTCAATGATCGGC+AGG | 0.502367 | 1.3:+8997964 | MS.gene61699:CDS |
| CAGAAGCAAGTCGGGTAGGA+AGG | 0.504025 | 1.3:-9001433 | None:intergenic |
| GGACCCCTTGATAAAGTTCA+AGG | 0.509202 | 1.3:+8998614 | MS.gene61699:CDS |
| TTCTGTATTTACAGTAACAT+GGG | 0.519769 | 1.3:-8997519 | None:intergenic |
| TCTTCACTTGGCTTATCTGA+AGG | 0.524692 | 1.3:-9001626 | None:intergenic |
| ACAGAAACTGTTGTTCCAGA+TGG | 0.529358 | 1.3:+8997536 | MS.gene61699:CDS |
| CAGCAGCTGCACCTACATCC+AGG | 0.533108 | 1.3:+9001477 | MS.gene61699:CDS |
| AACTGGAAACTCGTCTATGA+AGG | 0.533703 | 1.3:+8997595 | MS.gene61699:CDS |
| AGGTTTGGCATCTTCAGTGT+TGG | 0.535856 | 1.3:-8998786 | None:intergenic |
| AATAAGAATGCAAAGGTTGG+TGG | 0.536003 | 1.3:+8997815 | MS.gene61699:CDS |
| TTTCTGTATTTACAGTAACA+TGG | 0.539403 | 1.3:-8997520 | None:intergenic |
| AAGAATAAGAATGCAAAGGT+TGG | 0.541032 | 1.3:+8997812 | MS.gene61699:CDS |
| TCACAAGGAAACTCCACTAA+AGG | 0.546027 | 1.3:+9001371 | MS.gene61699:CDS |
| CCTTCTAATTCTGGAGAGGA+TGG | 0.547143 | 1.3:+8997476 | MS.gene61699:CDS |
| AAAGATTCAGGCAAAGGAGG+AGG | 0.547835 | 1.3:+8999007 | MS.gene61699:CDS |
| TCCTAAGGTGGAGCTGAAGA+AGG | 0.549377 | 1.3:+8999231 | MS.gene61699:CDS |
| TCTCCTTGAACTTTATCAAG+GGG | 0.551027 | 1.3:-8998617 | None:intergenic |
| CAAACTTGCATTAACACCGC+TGG | 0.555031 | 1.3:-8997843 | None:intergenic |
| GATGCCAAACCTCGCAGAGT+GGG | 0.558738 | 1.3:+8998797 | MS.gene61699:CDS |
| CTAGCTTATCCAAAGCTACA+GGG | 0.558761 | 1.3:+9001516 | MS.gene61699:CDS |
| TCTTCTTCCGACCAAGCTTG+GGG | 0.559077 | 1.3:-9001271 | None:intergenic |
| TGAGGAAAAGATTCAGGCAA+AGG | 0.563894 | 1.3:+8999001 | MS.gene61699:CDS |
| GCTCAATGCACAGTCATGAT+CGG | 0.564147 | 1.3:-9001710 | None:intergenic |
| TCAACAAATTCAGAGTCTGA+TGG | 0.564610 | 1.3:+9001296 | MS.gene61699:CDS |
| GCAGGCTCCTGATAGAAAGT+TGG | 0.569966 | 1.3:-8999205 | None:intergenic |
| AGGCCGAGATTAGAAAGCTT+AGG | 0.571850 | 1.3:+8999152 | MS.gene61699:CDS |
| CTTGATGATGTCCACCAAAA+CGG | 0.572886 | 1.3:+8997440 | MS.gene61699:CDS |
| ACATCATCAAGTCCATCAGC+AGG | 0.573313 | 1.3:-8997428 | None:intergenic |
| AAAACCGCTCATTCAATGAT+CGG | 0.576323 | 1.3:+8997960 | MS.gene61699:CDS |
| AGAAGCAAGTCGGGTAGGAA+GGG | 0.593358 | 1.3:-9001432 | None:intergenic |
| TGGTCCTTTCAGAAGCAAGT+CGG | 0.594849 | 1.3:-9001442 | None:intergenic |
| CTACCCGACTTGCTTCTGAA+AGG | 0.597161 | 1.3:+9001438 | MS.gene61699:CDS |
| GGAGCCTGCTCCTCCTAAGG+TGG | 0.600395 | 1.3:+8999219 | MS.gene61699:CDS |
| TCTTGTGACAACACGAGCTG+AGG | 0.603555 | 1.3:-9001686 | None:intergenic |
| AGTGAAGAATGTCTTGTGAA+TGG | 0.604525 | 1.3:+9001641 | MS.gene61699:CDS |
| CTTCTTCCGACCAAGCTTGG+GGG | 0.607681 | 1.3:-9001270 | None:intergenic |
| TCTTGTGAATGGTGACATAG+TGG | 0.607830 | 1.3:+9001652 | MS.gene61699:CDS |
| GGAAAAGATTCAGGCAAAGG+AGG | 0.608287 | 1.3:+8999004 | MS.gene61699:CDS |
| GAACAGTCAAGAGCACAAAA+GGG | 0.609638 | 1.3:+8997782 | MS.gene61699:CDS |
| AGTGAAAATAAAAGTTCCAA+CGG | 0.609860 | 1.3:+8997760 | MS.gene61699:CDS |
| TGTTGCTCTGCCTCATAATG+CGG | 0.612528 | 1.3:+9001601 | MS.gene61699:CDS |
| TCAAGTCCATCAGCAGGCAA+GGG | 0.615834 | 1.3:-8997422 | None:intergenic |
| TCGGCAGGCTCAACTGTCCA+AGG | 0.618945 | 1.3:+8997979 | MS.gene61699:CDS |
| TCTGTATTTACAGTAACATG+GGG | 0.619012 | 1.3:-8997518 | None:intergenic |
| GCAGTTCCTCACTAAGGTTG+AGG | 0.619309 | 1.3:+8998983 | MS.gene61699:intron |
| TCCTGATAGAAAGTTGGCAA+TGG | 0.619813 | 1.3:-8999199 | None:intergenic |
| CCTGCCGATCATTGAATGAG+CGG | 0.621740 | 1.3:-8997964 | None:intergenic |
| ATGCCAAACCTCGCAGAGTG+GGG | 0.623165 | 1.3:+8998798 | MS.gene61699:CDS |
| AACATTTGTATCACTTGACA+AGG | 0.624464 | 1.3:-9001582 | None:intergenic |
| TGTCAAGAATAAGAATGCAA+AGG | 0.625023 | 1.3:+8997808 | MS.gene61699:CDS |
| GGTAGCTGCAGTTCTCGACA+AGG | 0.636601 | 1.3:+9001323 | MS.gene61699:CDS |
| CTTTCAGAAGCAAGTCGGGT+AGG | 0.637355 | 1.3:-9001437 | None:intergenic |
| TCGTCTATGAAGGAAATCGA+AGG | 0.639138 | 1.3:+8997605 | MS.gene61699:CDS |
| GGAAGTGTCCCCACTCTGCG+AGG | 0.641410 | 1.3:-8998806 | None:intergenic |
| AGAAGTGCCATTTGAGACAG+CGG | 0.643689 | 1.3:-8997906 | None:intergenic |
| TAGCTTGCAAGCAAAATCCA+AGG | 0.644380 | 1.3:+8999037 | MS.gene61699:CDS |
| AAGGTTGGTGGTAGTTCCAG+CGG | 0.645340 | 1.3:+8997827 | MS.gene61699:CDS |
| TAGCTTATCCAAAGCTACAG+GGG | 0.645381 | 1.3:+9001517 | MS.gene61699:CDS |
| ACGAGCCGAGAAAAGGAGAG+AGG | 0.654233 | 1.3:+8998859 | MS.gene61699:CDS |
| GTAGGAAGGGACTTTCGTAG+TGG | 0.654273 | 1.3:-9001419 | None:intergenic |
| CTGAACGAGAAAGTGTCACA+AGG | 0.655908 | 1.3:+9001356 | MS.gene61699:CDS |
| CGAACCTTCTAATTCTGGAG+AGG | 0.658571 | 1.3:+8997472 | MS.gene61699:CDS |
| TATGGATTCAGTTTCAGGTG+CGG | 0.674466 | 1.3:+8998833 | MS.gene61699:CDS |
| AGATGCCAAACCTCGCAGAG+TGG | 0.675110 | 1.3:+8998796 | MS.gene61699:CDS |
| CGAAGGATCGAATGACAACG+TGG | 0.698275 | 1.3:+8997622 | MS.gene61699:CDS |
| CTGTATTTACAGTAACATGG+GGG | 0.709302 | 1.3:-8997517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAAGATTATGTAA+AGG | - | chr1.3:9001060-9001079 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATACTAGAAA+AGG | + | chr1.3:9000903-9000922 | MS.gene61699:intron | 10.0% |
| !!! | TATAATAATTTTTAGAATTC+AGG | - | chr1.3:9000365-9000384 | None:intergenic | 10.0% |
| !!! | TATTATATTTTTATAGTTCA+GGG | - | chr1.3:8998181-8998200 | None:intergenic | 10.0% |
| !!! | TTATTATATTTTTATAGTTC+AGG | - | chr1.3:8998182-8998201 | None:intergenic | 10.0% |
| !!! | TTTTCTAGTATAAATAAAAA+TGG | - | chr1.3:9000904-9000923 | None:intergenic | 10.0% |
| !! | AAAAACAAAATCATTGAAAA+AGG | + | chr1.3:8998592-8998611 | MS.gene61699:CDS | 15.0% |
| !! | AAAACAAAATCATTGAAAAA+GGG | + | chr1.3:8998593-8998612 | MS.gene61699:CDS | 15.0% |
| !! | AAAGCAAATAAAAAAATTTC+TGG | - | chr1.3:8999427-8999446 | None:intergenic | 15.0% |
| !! | AGTAAAAATGATACTTATAA+GGG | + | chr1.3:8998521-8998540 | MS.gene61699:intron | 15.0% |
| !! | TAAAAAAAATAAGGTTTCAA+AGG | - | chr1.3:9000543-9000562 | None:intergenic | 15.0% |
| !! | TAGTAAAAATGATACTTATA+AGG | + | chr1.3:8998520-8998539 | MS.gene61699:intron | 15.0% |
| !!! | TAAACTATTTCTATAGTTAA+GGG | + | chr1.3:8998320-8998339 | MS.gene61699:intron | 15.0% |
| !!! | TCTTTATTTGTGTAATATTT+GGG | + | chr1.3:8999743-8999762 | MS.gene61699:intron | 15.0% |
| !!! | TTAAACTATTTCTATAGTTA+AGG | + | chr1.3:8998319-8998338 | MS.gene61699:intron | 15.0% |
| !! | ATAATGTATTATTGAGTATG+AGG | + | chr1.3:8998726-8998745 | MS.gene61699:intron | 20.0% |
| !! | ATACGGATATATGAAATAAA+AGG | + | chr1.3:9000012-9000031 | MS.gene61699:intron | 20.0% |
| !! | CATTAGATAATCTGAAAATA+TGG | + | chr1.3:9000067-9000086 | MS.gene61699:intron | 20.0% |
| !! | GATAGTTTATGAATAATCTA+AGG | + | chr1.3:8998291-8998310 | MS.gene61699:intron | 20.0% |
| !! | TAAATAAACTCATAAGAGAA+AGG | - | chr1.3:8998662-8998681 | None:intergenic | 20.0% |
| !! | TCATATATCCGTATAAATAA+TGG | - | chr1.3:9000006-9000025 | None:intergenic | 20.0% |
| !! | TCTAAATCAGTTATATGATT+TGG | + | chr1.3:8997704-8997723 | MS.gene61699:intron | 20.0% |
| !! | TTACTCTTAAGATTATAGTT+TGG | + | chr1.3:8998386-8998405 | MS.gene61699:intron | 20.0% |
| !! | TTATTTATACTAGAAAAGGT+TGG | + | chr1.3:9000907-9000926 | MS.gene61699:intron | 20.0% |
| !! | TTGTAAGACCATTATTTATA+CGG | + | chr1.3:8999995-9000014 | MS.gene61699:intron | 20.0% |
| !!! | ACTATTTTAAAAGTAACTGA+GGG | - | chr1.3:8998241-8998260 | None:intergenic | 20.0% |
| !!! | AGATAATTTTCAAATCTGAA+TGG | - | chr1.3:9000630-9000649 | None:intergenic | 20.0% |
| !!! | AGATTTTCTTGTTTAAGAAA+AGG | - | chr1.3:8999603-8999622 | None:intergenic | 20.0% |
| !!! | ATAATTTTTAGAATTCAGGT+TGG | - | chr1.3:9000361-9000380 | None:intergenic | 20.0% |
| !!! | GTCTTTATTTGTGTAATATT+TGG | + | chr1.3:8999742-8999761 | MS.gene61699:intron | 20.0% |
| !!! | TAATATATTTGCTTTGTTCT+AGG | + | chr1.3:8997730-8997749 | MS.gene61699:intron | 20.0% |
| !!! | TAATTATGATTTGGTTATTG+TGG | + | chr1.3:9000561-9000580 | MS.gene61699:intron | 20.0% |
| !!! | TAATTTTTAGAATTCAGGTT+GGG | - | chr1.3:9000360-9000379 | None:intergenic | 20.0% |
| !!! | TACTATTTTAAAAGTAACTG+AGG | - | chr1.3:8998242-8998261 | None:intergenic | 20.0% |
| !!! | TATTGTGGCTTTTAAAATTA+TGG | + | chr1.3:9000576-9000595 | MS.gene61699:intron | 20.0% |
| !!! | TATTTTCAGATTATCTAATG+TGG | - | chr1.3:9000067-9000086 | None:intergenic | 20.0% |
| !!! | TTATCTAAAACAGAAAGAAA+AGG | - | chr1.3:8998100-8998119 | None:intergenic | 20.0% |
| !!! | TTTTCTTAAACAAGAAAATC+TGG | + | chr1.3:8999602-8999621 | MS.gene61699:intron | 20.0% |
| ! | AAAATAGAAGAAGACACAAA+AGG | - | chr1.3:8998076-8998095 | None:intergenic | 25.0% |
| ! | AGTGAAAATAAAAGTTCCAA+CGG | + | chr1.3:8997760-8997779 | MS.gene61699:CDS | 25.0% |
| ! | ATTGTGATTTCAATTTCAGT+TGG | + | chr1.3:9000427-9000446 | MS.gene61699:intron | 25.0% |
| ! | CAATAATTTGATCGTTTCAA+AGG | + | chr1.3:8997649-8997668 | MS.gene61699:CDS | 25.0% |
| ! | GAATTACTGACATGATTAAA+AGG | - | chr1.3:8999108-8999127 | None:intergenic | 25.0% |
| ! | TAATGTATGTGTTTATGAGA+GGG | + | chr1.3:8999458-8999477 | MS.gene61699:intron | 25.0% |
| ! | TAGAACAAGTTTATAGTTCA+GGG | + | chr1.3:8998260-8998279 | MS.gene61699:intron | 25.0% |
| ! | TCAAGATATAACTACGTATA+TGG | + | chr1.3:9000395-9000414 | MS.gene61699:intron | 25.0% |
| ! | TCTGAAAATATGGTTATAAG+TGG | + | chr1.3:9000077-9000096 | MS.gene61699:intron | 25.0% |
| ! | TGCTTAATAAACACATCATT+GGG | + | chr1.3:9000979-9000998 | MS.gene61699:intron | 25.0% |
| ! | TTCTGTATTTACAGTAACAT+GGG | - | chr1.3:8997522-8997541 | None:intergenic | 25.0% |
| ! | TTTCTGTATTTACAGTAACA+TGG | - | chr1.3:8997523-8997542 | None:intergenic | 25.0% |
| ! | TTTGTTCACATATATATCCA+CGG | + | chr1.3:9000697-9000716 | MS.gene61699:intron | 25.0% |
| !! | AGTAATTCTCACACTTTTAT+AGG | + | chr1.3:8999120-8999139 | MS.gene61699:intron | 25.0% |
| !! | ATATTTTCAGAATTTCCATC+TGG | - | chr1.3:8997554-8997573 | None:intergenic | 25.0% |
| !! | TTCTGAAAATATCAATCAGT+TGG | + | chr1.3:8997562-8997581 | MS.gene61699:CDS | 25.0% |
| !!! | AAAAGTTTGGTCTTATCATT+TGG | + | chr1.3:9001185-9001204 | MS.gene61699:intron | 25.0% |
| !!! | ATTGTTTTTTTCCTGTTATC+TGG | + | chr1.3:9001026-9001045 | MS.gene61699:intron | 25.0% |
| !!! | TGATGCTGATTTTTTTTTCA+TGG | - | chr1.3:8999631-8999650 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTCCTGTTATCT+GGG | + | chr1.3:9001027-9001046 | MS.gene61699:intron | 25.0% |
| AACATTTGTATCACTTGACA+AGG | - | chr1.3:9001585-9001604 | None:intergenic | 30.0% | |
| AACCTGTATAATGATACCAA+AGG | - | chr1.3:8998911-8998930 | None:intergenic | 30.0% | |
| AACTATCACTCTCACTTATT+TGG | + | chr1.3:8998154-8998173 | MS.gene61699:intron | 30.0% | |
| AACTATCACTCTCTCTTATT+TGG | - | chr1.3:8998347-8998366 | None:intergenic | 30.0% | |
| AAGAAATATCATATCTGTGG+AGG | + | chr1.3:8999972-8999991 | MS.gene61699:intron | 30.0% | |
| AAGAATAAGAATGCAAAGGT+TGG | + | chr1.3:8997812-8997831 | MS.gene61699:CDS | 30.0% | |
| AAGCTAGTATCTTTCTTTGT+TGG | - | chr1.3:9001503-9001522 | None:intergenic | 30.0% | |
| AATAAACACATCATTGGGAA+AGG | + | chr1.3:9000984-9001003 | MS.gene61699:intron | 30.0% | |
| ACAGCATTTGGTATAAATGA+GGG | - | chr1.3:9001109-9001128 | None:intergenic | 30.0% | |
| ACAGGAAAAAAACAATCAAG+AGG | - | chr1.3:9001022-9001041 | None:intergenic | 30.0% | |
| ACTATCACTCTCACTTATTT+GGG | + | chr1.3:8998155-8998174 | MS.gene61699:intron | 30.0% | |
| ATAAACACATCATTGGGAAA+GGG | + | chr1.3:9000985-9001004 | MS.gene61699:intron | 30.0% | |
| CAAATTATGGATTCAGTTTC+AGG | + | chr1.3:8998828-8998847 | MS.gene61699:CDS | 30.0% | |
| CAGGAAAAAAACAATCAAGA+GGG | - | chr1.3:9001021-9001040 | None:intergenic | 30.0% | |
| CCAGAAAATATGTTTACAAG+TGG | + | chr1.3:9000290-9000309 | MS.gene61699:intron | 30.0% | |
| CTGAAACTGAATCCATAATT+TGG | - | chr1.3:8998830-8998849 | None:intergenic | 30.0% | |
| CTGCTTAATAAACACATCAT+TGG | + | chr1.3:9000978-9000997 | MS.gene61699:intron | 30.0% | |
| GAAAATATGGTTATAAGTGG+TGG | + | chr1.3:9000080-9000099 | MS.gene61699:intron | 30.0% | |
| GAGTTCCTAAGTAAACATTT+GGG | - | chr1.3:8998034-8998053 | None:intergenic | 30.0% | |
| GCTAAGAAATATCATATCTG+TGG | + | chr1.3:8999969-8999988 | MS.gene61699:intron | 30.0% | |
| GTAACCCATTTAAAAACTTC+TGG | - | chr1.3:9001162-9001181 | None:intergenic | 30.0% | |
| GTAATGTATGTGTTTATGAG+AGG | + | chr1.3:8999457-8999476 | MS.gene61699:intron | 30.0% | |
| GTAGAACAAGTTTATAGTTC+AGG | + | chr1.3:8998259-8998278 | MS.gene61699:intron | 30.0% | |
| GTTAGCTCATTATAGTGATT+TGG | + | chr1.3:8999929-8999948 | MS.gene61699:intron | 30.0% | |
| TAACTCAACCCTAACAAAAT+CGG | - | chr1.3:9000124-9000143 | None:intergenic | 30.0% | |
| TCTAATCAGTAGATGGTTTA+GGG | + | chr1.3:9000761-9000780 | MS.gene61699:intron | 30.0% | |
| TCTGTATTTACAGTAACATG+GGG | - | chr1.3:8997521-8997540 | None:intergenic | 30.0% | |
| TCTTCTGCAATTTATATCTC+AGG | - | chr1.3:8999884-8999903 | None:intergenic | 30.0% | |
| TGAAACTTAACATGCTAAAC+AGG | - | chr1.3:8999578-8999597 | None:intergenic | 30.0% | |
| TGAGTTCCTAAGTAAACATT+TGG | - | chr1.3:8998035-8998054 | None:intergenic | 30.0% | |
| TGTCAAGAATAAGAATGCAA+AGG | + | chr1.3:8997808-8997827 | MS.gene61699:CDS | 30.0% | |
| TTCTCCTTGAACTTTATCAA+GGG | - | chr1.3:8998621-8998640 | None:intergenic | 30.0% | |
| TTCTTCCCAAATGTTTACTT+AGG | + | chr1.3:8998026-8998045 | MS.gene61699:intron | 30.0% | |
| TTGTTCACATATATATCCAC+GGG | + | chr1.3:9000698-9000717 | MS.gene61699:intron | 30.0% | |
| TTTGCATTCTTATTCTTGAC+AGG | - | chr1.3:8997809-8997828 | None:intergenic | 30.0% | |
| ! | AATTTAACTTCTGTATCCTC+TGG | + | chr1.3:9001210-9001229 | MS.gene61699:intron | 30.0% |
| ! | ACATGTGATCTATTGATTAC+AGG | + | chr1.3:8998561-8998580 | MS.gene61699:intron | 30.0% |
| ! | AGCTTCCAGAAGTTTTTAAA+TGG | + | chr1.3:9001154-9001173 | MS.gene61699:intron | 30.0% |
| ! | CATAGTTCTACATTTGCAAT+AGG | - | chr1.3:8998690-8998709 | None:intergenic | 30.0% |
| ! | CATGTGATCTATTGATTACA+GGG | + | chr1.3:8998562-8998581 | MS.gene61699:intron | 30.0% |
| ! | CCACTTGTAAACATATTTTC+TGG | - | chr1.3:9000293-9000312 | None:intergenic | 30.0% |
| ! | GCTTCCAGAAGTTTTTAAAT+GGG | + | chr1.3:9001155-9001174 | MS.gene61699:intron | 30.0% |
| ! | TAAACCATCTACTGATTAGA+GGG | - | chr1.3:9000761-9000780 | None:intergenic | 30.0% |
| ! | TAAGGTTTCAAAGGAGATTT+TGG | - | chr1.3:9000534-9000553 | None:intergenic | 30.0% |
| ! | TAGTTTAAGAACCAAGTTGA+AGG | - | chr1.3:8998139-8998158 | None:intergenic | 30.0% |
| ! | TGATTTTCCTTTTCTTGAGT+TGG | + | chr1.3:8997677-8997696 | MS.gene61699:intron | 30.0% |
| ! | TTGAATGAGCGGTTTTTAAT+AGG | - | chr1.3:8997956-8997975 | None:intergenic | 30.0% |
| !! | AATGGGTTACTGTAAAAGTT+TGG | + | chr1.3:9001172-9001191 | MS.gene61699:intron | 30.0% |
| !! | ATGGAGTTGCTTTAAAAGTT+AGG | - | chr1.3:8999183-8999202 | None:intergenic | 30.0% |
| !! | TATGAGGATGTGTATTTTTG+TGG | + | chr1.3:8998742-8998761 | MS.gene61699:intron | 30.0% |
| !! | TGGTACTTTTAAGAGGATTA+AGG | - | chr1.3:8998769-8998788 | None:intergenic | 30.0% |
| AAAACCGCTCATTCAATGAT+CGG | + | chr1.3:8997960-8997979 | MS.gene61699:CDS | 35.0% | |
| AAATAATCAGTGCAGACTCA+AGG | - | chr1.3:8999404-8999423 | None:intergenic | 35.0% | |
| AAATGCTGTGTGAAAGTTCT+TGG | + | chr1.3:9001120-9001139 | MS.gene61699:intron | 35.0% | |
| AAGAACTTTCACACAGCATT+TGG | - | chr1.3:9001121-9001140 | None:intergenic | 35.0% | |
| AATAAGAATGCAAAGGTTGG+TGG | + | chr1.3:8997815-8997834 | MS.gene61699:CDS | 35.0% | |
| AATAATCAGTGCAGACTCAA+GGG | - | chr1.3:8999403-8999422 | None:intergenic | 35.0% | |
| AATTCAGAGTCTGATGGAAA+TGG | + | chr1.3:9001302-9001321 | MS.gene61699:CDS | 35.0% | |
| AGAGAAACCAACTCAAGAAA+AGG | - | chr1.3:8997687-8997706 | None:intergenic | 35.0% | |
| AGAGTCTATCCAATATCCAT+TGG | + | chr1.3:9000172-9000191 | MS.gene61699:intron | 35.0% | |
| AGTGAAGAATGTCTTGTGAA+TGG | + | chr1.3:9001641-9001660 | MS.gene61699:CDS | 35.0% | |
| AGTTCTACATTTGCAATAGG+AGG | - | chr1.3:8998687-8998706 | None:intergenic | 35.0% | |
| ATGCAAAATCAGTTGGAAGA+AGG | - | chr1.3:8999706-8999725 | None:intergenic | 35.0% | |
| CAAAGTTGGAAAAGACAAAC+AGG | + | chr1.3:8997877-8997896 | MS.gene61699:CDS | 35.0% | |
| CAAATCTGAATGGCTCAATT+TGG | - | chr1.3:9000620-9000639 | None:intergenic | 35.0% | |
| CACAGCATTTGGTATAAATG+AGG | - | chr1.3:9001110-9001129 | None:intergenic | 35.0% | |
| CACCTTTGGTATCATTATAC+AGG | + | chr1.3:8998906-8998925 | MS.gene61699:intron | 35.0% | |
| CAGCATTTGGTATAAATGAG+GGG | - | chr1.3:9001108-9001127 | None:intergenic | 35.0% | |
| CAGTTAATAATTATCACCCG+TGG | - | chr1.3:9000717-9000736 | None:intergenic | 35.0% | |
| CATGCTAAACAGGCAATTAT+AGG | - | chr1.3:8999568-8999587 | None:intergenic | 35.0% | |
| CTAATCAGTAGATGGTTTAG+GGG | + | chr1.3:9000762-9000781 | MS.gene61699:intron | 35.0% | |
| CTCTAATCAGTAGATGGTTT+AGG | + | chr1.3:9000760-9000779 | MS.gene61699:intron | 35.0% | |
| CTGTATAATGATACCAAAGG+TGG | - | chr1.3:8998908-8998927 | None:intergenic | 35.0% | |
| CTGTATTTACAGTAACATGG+GGG | - | chr1.3:8997520-8997539 | None:intergenic | 35.0% | |
| CTTCCTAAGCTTTCTAATCT+CGG | - | chr1.3:8999158-8999177 | None:intergenic | 35.0% | |
| CTTCTCCTTGAACTTTATCA+AGG | - | chr1.3:8998622-8998641 | None:intergenic | 35.0% | |
| GAGTCTATCCAATATCCATT+GGG | + | chr1.3:9000173-9000192 | MS.gene61699:intron | 35.0% | |
| GATATCAACTATTCTCACCT+TGG | - | chr1.3:8999057-8999076 | None:intergenic | 35.0% | |
| GGATTTGTCTCATCTAATGT+GGG | - | chr1.3:9000272-9000291 | None:intergenic | 35.0% | |
| TAAGGTTGAGGAAAAGATTC+AGG | + | chr1.3:8998995-8999014 | MS.gene61699:CDS | 35.0% | |
| TAATCAGTAGATGGTTTAGG+GGG | + | chr1.3:9000763-9000782 | MS.gene61699:intron | 35.0% | |
| TCAACAAATTCAGAGTCTGA+TGG | + | chr1.3:9001296-9001315 | MS.gene61699:CDS | 35.0% | |
| TCTACATTAGTATTGTCCAG+AGG | - | chr1.3:9001229-9001248 | None:intergenic | 35.0% | |
| TCTCCTTGAACTTTATCAAG+GGG | - | chr1.3:8998620-8998639 | None:intergenic | 35.0% | |
| TGCAAAATCAGTTGGAAGAA+GGG | - | chr1.3:8999705-8999724 | None:intergenic | 35.0% | |
| TGGATTTGTCTCATCTAATG+TGG | - | chr1.3:9000273-9000292 | None:intergenic | 35.0% | |
| TGTAACAACAGAGTTTACCT+TGG | - | chr1.3:8997999-8998018 | None:intergenic | 35.0% | |
| TTCACAAGACATTCTTCACT+TGG | - | chr1.3:9001641-9001660 | None:intergenic | 35.0% | |
| TTGGTGAAAAACAGCAAAGT+TGG | + | chr1.3:8997863-8997882 | MS.gene61699:CDS | 35.0% | |
| ! | ACTTTTATAGGAGAGTCAAG+AGG | + | chr1.3:8999132-8999151 | MS.gene61699:intron | 35.0% |
| ! | CTAAACCATCTACTGATTAG+AGG | - | chr1.3:9000762-9000781 | None:intergenic | 35.0% |
| ! | GGTAATGACAGGGTATTTAT+GGG | - | chr1.3:8999780-8999799 | None:intergenic | 35.0% |
| ! | GGTTTTTAATAGGCTGTCTA+GGG | - | chr1.3:8997946-8997965 | None:intergenic | 35.0% |
| ! | TAAGATAAGAGCACACAACA+AGG | - | chr1.3:8999379-8999398 | None:intergenic | 35.0% |
| ! | TGGTAATGACAGGGTATTTA+TGG | - | chr1.3:8999781-8999800 | None:intergenic | 35.0% |
| !! | ATCAAAGGTTTGGTAATGAC+AGG | - | chr1.3:8999791-8999810 | None:intergenic | 35.0% |
| !! | ATTTGCTTTGTTCTAGGACA+AGG | + | chr1.3:8997736-8997755 | MS.gene61699:intron | 35.0% |
| !! | CTTACAAGCCGATTTTGTTA+GGG | + | chr1.3:9000113-9000132 | MS.gene61699:intron | 35.0% |
| !! | GATGGGTTGAGAATAGTTTA+GGG | - | chr1.3:8998210-8998229 | None:intergenic | 35.0% |
| !! | TCAAAGGTTTGGTAATGACA+GGG | - | chr1.3:8999790-8999809 | None:intergenic | 35.0% |
| !! | TGATGGGTTGAGAATAGTTT+AGG | - | chr1.3:8998211-8998230 | None:intergenic | 35.0% |
| !!! | CAAGGTACTGTTTTCTTCAT+TGG | - | chr1.3:9001567-9001586 | None:intergenic | 35.0% |
| !!! | TCAGTGTTGGTACTTTTAAG+AGG | - | chr1.3:8998776-8998795 | None:intergenic | 35.0% |
| AACTGAGGGACTAACTTGAT+GGG | - | chr1.3:8998227-8998246 | None:intergenic | 40.0% | |
| AACTGGAAACTCGTCTATGA+AGG | + | chr1.3:8997595-8997614 | MS.gene61699:CDS | 40.0% | |
| AATCAGTAGATGGTTTAGGG+GGG | + | chr1.3:9000764-9000783 | MS.gene61699:intron | 40.0% | |
| ACACCACATCAAGAACTTTG+TGG | - | chr1.3:9000799-9000818 | None:intergenic | 40.0% | |
| ACAGAAACTGTTGTTCCAGA+TGG | + | chr1.3:8997536-8997555 | MS.gene61699:CDS | 40.0% | |
| AGCTGCTGAATTGGAAGAAT+TGG | - | chr1.3:9001465-9001484 | None:intergenic | 40.0% | |
| AGTATCTTTCTTTGTTGGCC+TGG | - | chr1.3:9001498-9001517 | None:intergenic | 40.0% | |
| ATATAACGCGCAGCAATCAA+AGG | - | chr1.3:8999806-8999825 | None:intergenic | 40.0% | |
| CTAACCCTCTAATCAGTAGA+TGG | + | chr1.3:9000754-9000773 | MS.gene61699:intron | 40.0% | |
| CTAGCTTATCCAAAGCTACA+GGG | + | chr1.3:9001516-9001535 | MS.gene61699:CDS | 40.0% | |
| CTGAGGAGAACAAAGTGAAA+AGG | - | chr1.3:8998424-8998443 | None:intergenic | 40.0% | |
| GCAAAATCAGTTGGAAGAAG+GGG | - | chr1.3:8999704-8999723 | None:intergenic | 40.0% | |
| TAACTGAGGGACTAACTTGA+TGG | - | chr1.3:8998228-8998247 | None:intergenic | 40.0% | |
| TAGCTTATCCAAAGCTACAG+GGG | + | chr1.3:9001517-9001536 | MS.gene61699:CDS | 40.0% | |
| TCACAAGGAAACTCCACTAA+AGG | + | chr1.3:9001371-9001390 | MS.gene61699:CDS | 40.0% | |
| TCAGCACATGCAAAATCAGT+TGG | - | chr1.3:8999713-8999732 | None:intergenic | 40.0% | |
| TCCATTGCCAACTTTCTATC+AGG | + | chr1.3:8999198-8999217 | MS.gene61699:CDS | 40.0% | |
| TCCTGAGAAAACCTTCAACT+TGG | + | chr1.3:8998125-8998144 | MS.gene61699:intron | 40.0% | |
| TCCTGATAGAAAGTTGGCAA+TGG | - | chr1.3:8999202-8999221 | None:intergenic | 40.0% | |
| TCGTCTATGAAGGAAATCGA+AGG | + | chr1.3:8997605-8997624 | MS.gene61699:CDS | 40.0% | |
| TCTTCACTTGGCTTATCTGA+AGG | - | chr1.3:9001629-9001648 | None:intergenic | 40.0% | |
| TCTTGTGAATGGTGACATAG+TGG | + | chr1.3:9001652-9001671 | MS.gene61699:CDS | 40.0% | |
| TGAGGAAAAGATTCAGGCAA+AGG | + | chr1.3:8999001-8999020 | MS.gene61699:CDS | 40.0% | |
| TTTGGTATAAATGAGGGGAG+CGG | - | chr1.3:9001103-9001122 | None:intergenic | 40.0% | |
| ! | ACTAGCTTATCCAAAGCTAC+AGG | + | chr1.3:9001515-9001534 | MS.gene61699:CDS | 40.0% |
| ! | ATCAATCAGTTGGAAAGCAC+TGG | + | chr1.3:8997572-8997591 | MS.gene61699:CDS | 40.0% |
| ! | CGGTTTTTAATAGGCTGTCT+AGG | - | chr1.3:8997947-8997966 | None:intergenic | 40.0% |
| ! | GAACAGTCAAGAGCACAAAA+GGG | + | chr1.3:8997782-8997801 | MS.gene61699:CDS | 40.0% |
| ! | GGTACTGTTTTCTTCATTGG+CGG | - | chr1.3:9001564-9001583 | None:intergenic | 40.0% |
| ! | GTACACTTTGTTTCCACCTT+TGG | + | chr1.3:8998892-8998911 | MS.gene61699:intron | 40.0% |
| ! | GTTTACCTCTCTCCTTTTCT+CGG | - | chr1.3:8998867-8998886 | None:intergenic | 40.0% |
| ! | TAGCTTGCAAGCAAAATCCA+AGG | + | chr1.3:8999037-8999056 | MS.gene61699:CDS | 40.0% |
| ! | TATGGATTCAGTTTCAGGTG+CGG | + | chr1.3:8998833-8998852 | MS.gene61699:CDS | 40.0% |
| ! | TCTTTTCCTCAACCTTAGTG+AGG | - | chr1.3:8998992-8999011 | None:intergenic | 40.0% |
| ! | TTCGTAGTGGCTTCTTTTGA+TGG | - | chr1.3:9001409-9001428 | None:intergenic | 40.0% |
| !! | ACCAAGTTGAAGGTTTTCTC+AGG | - | chr1.3:8998129-8998148 | None:intergenic | 40.0% |
| !! | CCTAACAAAATCGGCTTGTA+AGG | - | chr1.3:9000115-9000134 | None:intergenic | 40.0% |
| !! | CCTTACAAGCCGATTTTGTT+AGG | + | chr1.3:9000112-9000131 | MS.gene61699:intron | 40.0% |
| !! | CTTGATGATGTCCACCAAAA+CGG | + | chr1.3:8997440-8997459 | MS.gene61699:CDS | 40.0% |
| AAAGATTCAGGCAAAGGAGG+AGG | + | chr1.3:8999007-8999026 | MS.gene61699:CDS | 45.0% | |
| AAGTATACACACGCAGTCAG+AGG | - | chr1.3:8999313-8999332 | None:intergenic | 45.0% | |
| ACATCATCAAGTCCATCAGC+AGG | - | chr1.3:8997431-8997450 | None:intergenic | 45.0% | |
| AGAAGGGGAAGTGGAAAACA+AGG | - | chr1.3:8999689-8999708 | None:intergenic | 45.0% | |
| AGGATCAATGCCCAGATAAC+AGG | - | chr1.3:9001040-9001059 | None:intergenic | 45.0% | |
| AGGCCGAGATTAGAAAGCTT+AGG | + | chr1.3:8999152-8999171 | MS.gene61699:CDS | 45.0% | |
| AGGTTTGGCATCTTCAGTGT+TGG | - | chr1.3:8998789-8998808 | None:intergenic | 45.0% | |
| ATAGTCCTCACCTTACAAGC+TGG | + | chr1.3:9000315-9000334 | MS.gene61699:intron | 45.0% | |
| ATATCCAGTCCTTGGCACAA+GGG | + | chr1.3:9000231-9000250 | MS.gene61699:intron | 45.0% | |
| ATTAATCCCTTGCCTGCTGA+TGG | + | chr1.3:8997416-8997435 | MS.gene61699:CDS | 45.0% | |
| CAAACTTGCATTAACACCGC+TGG | - | chr1.3:8997846-8997865 | None:intergenic | 45.0% | |
| CACGACGAACCTTCTAATTC+TGG | + | chr1.3:8997467-8997486 | MS.gene61699:CDS | 45.0% | |
| CCATCCTCTCCAGAATTAGA+AGG | - | chr1.3:8997479-8997498 | None:intergenic | 45.0% | |
| CGACCACAAAGTTCTTGATG+TGG | + | chr1.3:9000793-9000812 | MS.gene61699:intron | 45.0% | |
| GGAAAAGATTCAGGCAAAGG+AGG | + | chr1.3:8999004-8999023 | MS.gene61699:CDS | 45.0% | |
| GGACCCCTTGATAAAGTTCA+AGG | + | chr1.3:8998614-8998633 | MS.gene61699:CDS | 45.0% | |
| GTGACTTCTTGATTGCATGC+AGG | + | chr1.3:8999353-8999372 | MS.gene61699:intron | 45.0% | |
| GTGGGGACACTTCCAAATTA+TGG | + | chr1.3:8998815-8998834 | MS.gene61699:CDS | 45.0% | |
| TCAGCAGGCAAGGGATTAAT+TGG | - | chr1.3:8997416-8997435 | None:intergenic | 45.0% | |
| TGCAAGCAAACACACACAGA+GGG | - | chr1.3:8999268-8999287 | None:intergenic | 45.0% | |
| TGCATTTGCTTGCTCAAGTG+TGG | + | chr1.3:8999825-8999844 | MS.gene61699:intron | 45.0% | |
| TGCTGTGTGAAAGTTCTTGG+TGG | + | chr1.3:9001123-9001142 | MS.gene61699:intron | 45.0% | |
| TGGTCCTTTCAGAAGCAAGT+CGG | - | chr1.3:9001445-9001464 | None:intergenic | 45.0% | |
| TGTTGCTCTGCCTCATAATG+CGG | + | chr1.3:9001601-9001620 | MS.gene61699:CDS | 45.0% | |
| TTGTGAGCAGTTCCTCACTA+AGG | + | chr1.3:8998977-8998996 | MS.gene61699:intron | 45.0% | |
| TTTCTCTTCCCCTGTAGCTT+TGG | - | chr1.3:9001528-9001547 | None:intergenic | 45.0% | |
| ! | AGGCAATTATAGGAGCACGT+GGG | - | chr1.3:8999558-8999577 | None:intergenic | 45.0% |
| ! | CAGCGGTGTTAATGCAAGTT+TGG | + | chr1.3:8997844-8997863 | MS.gene61699:CDS | 45.0% |
| ! | CCTTCTAATTCTGGAGAGGA+TGG | + | chr1.3:8997476-8997495 | MS.gene61699:CDS | 45.0% |
| ! | CGAACCTTCTAATTCTGGAG+AGG | + | chr1.3:8997472-8997491 | MS.gene61699:CDS | 45.0% |
| ! | GGAACAGTCAAGAGCACAAA+AGG | + | chr1.3:8997781-8997800 | MS.gene61699:CDS | 45.0% |
| ! | GGGGATTTTGCTCTTGTAGT+TGG | - | chr1.3:9001254-9001273 | None:intergenic | 45.0% |
| ! | TGCTCTAGATATCCAGTCCT+TGG | + | chr1.3:9000223-9000242 | MS.gene61699:intron | 45.0% |
| ! | TTCTTTGTTGGCCTGGATGT+AGG | - | chr1.3:9001491-9001510 | None:intergenic | 45.0% |
| !! | ACCTTACAAGCTGGTTTGCA+AGG | + | chr1.3:9000324-9000343 | MS.gene61699:intron | 45.0% |
| !! | AGAAGTGCCATTTGAGACAG+CGG | - | chr1.3:8997909-8997928 | None:intergenic | 45.0% |
| !! | CAAAATCGGCTTGTAAGGTG+AGG | - | chr1.3:9000110-9000129 | None:intergenic | 45.0% |
| !! | CCTTACAAGCTGGTTTGCAA+GGG | + | chr1.3:9000325-9000344 | MS.gene61699:intron | 45.0% |
| !! | CTGAACGAGAAAGTGTCACA+AGG | + | chr1.3:9001356-9001375 | MS.gene61699:CDS | 45.0% |
| !! | AATCATAATTAAAAAAAATA+AGG | - | chr1.3:9000552-9000571 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTAATTATGATT+TGG | + | chr1.3:9000552-9000571 | MS.gene61699:intron | 5.0% |
| ACATCAGAAGACGCTGCTTC+AGG | - | chr1.3:8998459-8998478 | None:intergenic | 50.0% | |
| ACCTTCTTCAGCTCCACCTT+AGG | - | chr1.3:8999235-8999254 | None:intergenic | 50.0% | |
| ACGCGCAGCAATCAAAGGTT+TGG | - | chr1.3:8999801-8999820 | None:intergenic | 50.0% | |
| AGAAGCAAGTCGGGTAGGAA+GGG | - | chr1.3:9001435-9001454 | None:intergenic | 50.0% | |
| AGAGCAAAATCCCCCAAGCT+TGG | + | chr1.3:9001260-9001279 | MS.gene61699:CDS | 50.0% | |
| AGTCTTCTTCCGACCAAGCT+TGG | - | chr1.3:9001276-9001295 | None:intergenic | 50.0% | |
| ATCAAGTCCATCAGCAGGCA+AGG | - | chr1.3:8997426-8997445 | None:intergenic | 50.0% | |
| CAAAATCCCCCAAGCTTGGT+CGG | + | chr1.3:9001264-9001283 | MS.gene61699:CDS | 50.0% | |
| CCCTTGCAAACCAGCTTGTA+AGG | - | chr1.3:9000328-9000347 | None:intergenic | 50.0% | |
| CCTGCCGATCATTGAATGAG+CGG | - | chr1.3:8997967-8997986 | None:intergenic | 50.0% | |
| CGAAGGATCGAATGACAACG+TGG | + | chr1.3:8997622-8997641 | MS.gene61699:CDS | 50.0% | |
| CTTTCAGAAGCAAGTCGGGT+AGG | - | chr1.3:9001440-9001459 | None:intergenic | 50.0% | |
| GATATCCAGTCCTTGGCACA+AGG | + | chr1.3:9000230-9000249 | MS.gene61699:intron | 50.0% | |
| GCAAACCAGCTTGTAAGGTG+AGG | - | chr1.3:9000323-9000342 | None:intergenic | 50.0% | |
| GCAGGCTCCTGATAGAAAGT+TGG | - | chr1.3:8999208-8999227 | None:intergenic | 50.0% | |
| GCAGTTCCTCACTAAGGTTG+AGG | + | chr1.3:8998983-8999002 | MS.gene61699:intron | 50.0% | |
| GCATCATCCGCTGTCTCAAA+TGG | + | chr1.3:8997899-8997918 | MS.gene61699:CDS | 50.0% | |
| GGTCCTTTCAGAAGCAAGTC+GGG | - | chr1.3:9001444-9001463 | None:intergenic | 50.0% | |
| GTAGGAAGGGACTTTCGTAG+TGG | - | chr1.3:9001422-9001441 | None:intergenic | 50.0% | |
| GTCTTCTTCCGACCAAGCTT+GGG | - | chr1.3:9001275-9001294 | None:intergenic | 50.0% | |
| GTGCAAGCAAACACACACAG+AGG | - | chr1.3:8999269-8999288 | None:intergenic | 50.0% | |
| TCAAGTCCATCAGCAGGCAA+GGG | - | chr1.3:8997425-8997444 | None:intergenic | 50.0% | |
| TCAGTTGGAAGAAGGGGAAG+TGG | - | chr1.3:8999698-8999717 | None:intergenic | 50.0% | |
| TCCTAAGGTGGAGCTGAAGA+AGG | + | chr1.3:8999231-8999250 | MS.gene61699:CDS | 50.0% | |
| TCTGAAGGAGCCGCATTATG+AGG | - | chr1.3:9001614-9001633 | None:intergenic | 50.0% | |
| TCTTCTTCCGACCAAGCTTG+GGG | - | chr1.3:9001274-9001293 | None:intergenic | 50.0% | |
| TCTTGTGACAACACGAGCTG+AGG | - | chr1.3:9001689-9001708 | None:intergenic | 50.0% | |
| TGTAGGTGCAGCTGCTGAAT+TGG | - | chr1.3:9001474-9001493 | None:intergenic | 50.0% | |
| TGTGCTCTTGACTGTTCCGT+TGG | - | chr1.3:8997779-8997798 | None:intergenic | 50.0% | |
| TTCTTCAGCTCCACCTTAGG+AGG | - | chr1.3:8999232-8999251 | None:intergenic | 50.0% | |
| ! | CAGGCAATTATAGGAGCACG+TGG | - | chr1.3:8999559-8999578 | None:intergenic | 50.0% |
| ! | CTACCCGACTTGCTTCTGAA+AGG | + | chr1.3:9001438-9001457 | MS.gene61699:CDS | 50.0% |
| ! | CTGGTTTGCAAGGGTTGAGT+AGG | + | chr1.3:9000334-9000353 | MS.gene61699:intron | 50.0% |
| ! | GTTCGTCGTGAACACCGTTT+TGG | - | chr1.3:8997457-8997476 | None:intergenic | 50.0% |
| ! | TATCTAGAGCATGACCCGAG+TGG | - | chr1.3:9000214-9000233 | None:intergenic | 50.0% |
| !! | AAGGTTGGTGGTAGTTCCAG+CGG | + | chr1.3:8997827-8997846 | MS.gene61699:CDS | 50.0% |
| !! | CAGTTGGAAAGCACTGGAAC+TGG | + | chr1.3:8997578-8997597 | MS.gene61699:CDS | 50.0% |
| !! | TCAGGCTTTGAAGGTTGCTG+AGG | - | chr1.3:8998441-8998460 | None:intergenic | 50.0% |
| AATGCACCTCCCTTGTGCCA+AGG | - | chr1.3:9000243-9000262 | None:intergenic | 55.0% | |
| ACGAGCCGAGAAAAGGAGAG+AGG | + | chr1.3:8998859-8998878 | MS.gene61699:CDS | 55.0% | |
| AGATGCCAAACCTCGCAGAG+TGG | + | chr1.3:8998796-8998815 | MS.gene61699:CDS | 55.0% | |
| ATGCCAAACCTCGCAGAGTG+GGG | + | chr1.3:8998798-8998817 | MS.gene61699:CDS | 55.0% | |
| CAGAAGCAAGTCGGGTAGGA+AGG | - | chr1.3:9001436-9001455 | None:intergenic | 55.0% | |
| CCGCTCATTCAATGATCGGC+AGG | + | chr1.3:8997964-8997983 | MS.gene61699:CDS | 55.0% | |
| CTTCTTCCGACCAAGCTTGG+GGG | - | chr1.3:9001273-9001292 | None:intergenic | 55.0% | |
| GATGCCAAACCTCGCAGAGT+GGG | + | chr1.3:8998797-8998816 | MS.gene61699:CDS | 55.0% | |
| GCGGGAGACCCAATGGATAT+TGG | - | chr1.3:9000184-9000203 | None:intergenic | 55.0% | |
| GGTAGCTGCAGTTCTCGACA+AGG | + | chr1.3:9001323-9001342 | MS.gene61699:CDS | 55.0% | |
| GGTATAAATGAGGGGAGCGG+AGG | - | chr1.3:9001100-9001119 | None:intergenic | 55.0% | |
| TCCATTGGGTCTCCCGCTAT+CGG | + | chr1.3:9000187-9000206 | MS.gene61699:intron | 55.0% | |
| ! | CGTCGTGAACACCGTTTTGG+TGG | - | chr1.3:8997454-8997473 | None:intergenic | 55.0% |
| ! | GACGCTGCTTCAGGCTTTGA+AGG | - | chr1.3:8998450-8998469 | None:intergenic | 55.0% |
| ACCTCCCTTGTGCCAAGGAC+TGG | - | chr1.3:9000238-9000257 | None:intergenic | 60.0% | |
| AGCTCCACCTTAGGAGGAGC+AGG | - | chr1.3:8999226-8999245 | None:intergenic | 60.0% | |
| CAGCAGCTGCACCTACATCC+AGG | + | chr1.3:9001477-9001496 | MS.gene61699:CDS | 60.0% | |
| CCATTGGGTCTCCCGCTATC+GGG | + | chr1.3:9000188-9000207 | MS.gene61699:intron | 60.0% | |
| GCGGTGAACGAGCCGAGAAA+AGG | + | chr1.3:8998852-8998871 | MS.gene61699:CDS | 60.0% | |
| TCAGGAGCCTGCTCCTCCTA+AGG | + | chr1.3:8999216-8999235 | MS.gene61699:CDS | 60.0% | |
| TCCAGTCCTTGGCACAAGGG+AGG | + | chr1.3:9000234-9000253 | MS.gene61699:intron | 60.0% | |
| TCGGCAGGCTCAACTGTCCA+AGG | + | chr1.3:8997979-8997998 | MS.gene61699:CDS | 60.0% | |
| TGTCCCCACTCTGCGAGGTT+TGG | - | chr1.3:8998804-8998823 | None:intergenic | 60.0% | |
| GGAGCCTGCTCCTCCTAAGG+TGG | + | chr1.3:8999219-8999238 | MS.gene61699:CDS | 65.0% | |
| TCTCCCGCTATCGGGCCACT+CGG | + | chr1.3:9000196-9000215 | MS.gene61699:intron | 65.0% | |
| TGACCCGAGTGGCCCGATAG+CGG | - | chr1.3:9000203-9000222 | None:intergenic | 65.0% | |
| !! | CCCGATAGCGGGAGACCCAA+TGG | - | chr1.3:9000191-9000210 | None:intergenic | 65.0% |
| !! | GGAAGTGTCCCCACTCTGCG+AGG | - | chr1.3:8998809-8998828 | None:intergenic | 65.0% |
| CTCCCGCTATCGGGCCACTC+GGG | + | chr1.3:9000197-9000216 | MS.gene61699:intron | 70.0% | |
| GACCCGAGTGGCCCGATAGC+GGG | - | chr1.3:9000202-9000221 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8997404 | 9001730 | 8997404 | ID=MS.gene61699 |
| chr1.3 | mRNA | 8997404 | 9001730 | 8997404 | ID=MS.gene61699.t1;Parent=MS.gene61699 |
| chr1.3 | exon | 8997404 | 8997670 | 8997404 | ID=MS.gene61699.t1.exon1;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8997404 | 8997670 | 8997404 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8997752 | 8998000 | 8997752 | ID=MS.gene61699.t1.exon2;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8997752 | 8998000 | 8997752 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8998444 | 8998484 | 8998444 | ID=MS.gene61699.t1.exon3;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8998444 | 8998484 | 8998444 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8998583 | 8998654 | 8998583 | ID=MS.gene61699.t1.exon4;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8998583 | 8998654 | 8998583 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8998784 | 8998880 | 8998784 | ID=MS.gene61699.t1.exon5;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8998784 | 8998880 | 8998784 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8998987 | 8999058 | 8998987 | ID=MS.gene61699.t1.exon6;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8998987 | 8999058 | 8998987 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 8999142 | 8999252 | 8999142 | ID=MS.gene61699.t1.exon7;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 8999142 | 8999252 | 8999142 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| chr1.3 | exon | 9001248 | 9001730 | 9001248 | ID=MS.gene61699.t1.exon8;Parent=MS.gene61699.t1 |
| chr1.3 | CDS | 9001248 | 9001730 | 9001248 | ID=cds.MS.gene61699.t1;Parent=MS.gene61699.t1 |
| Gene Sequence |
| Protein sequence |
