Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28922.t1 | XP_003607308.1 | 97.8 | 809 | 8 | 1 | 1 | 809 | 1 | 799 | 0.00E+00 | 1486.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28922.t1 | O81742 | 86.5 | 812 | 91 | 3 | 1 | 809 | 1 | 796 | 0.0e+00 | 1329.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28922.t1 | G7JQK3 | 97.8 | 809 | 8 | 1 | 1 | 809 | 1 | 799 | 0.0e+00 | 1486.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene28922 | -0.817921 | 2.57E-52 | -1.69E-46 |
MS.gene049293 | MS.gene28922 | 0.802094 | 6.60E-49 | -1.69E-46 |
MS.gene049297 | MS.gene28922 | -0.814803 | 1.28E-51 | -1.69E-46 |
MS.gene049378 | MS.gene28922 | -0.82349 | 1.35E-53 | -1.69E-46 |
MS.gene049599 | MS.gene28922 | 0.82818 | 1.04E-54 | -1.69E-46 |
MS.gene049758 | MS.gene28922 | -0.800372 | 1.49E-48 | -1.69E-46 |
MS.gene050227 | MS.gene28922 | -0.829324 | 5.49E-55 | -1.69E-46 |
MS.gene050228 | MS.gene28922 | -0.824979 | 6.02E-54 | -1.69E-46 |
MS.gene050303 | MS.gene28922 | -0.856287 | 3.56E-62 | -1.69E-46 |
MS.gene050319 | MS.gene28922 | 0.805294 | 1.43E-49 | -1.69E-46 |
MS.gene050330 | MS.gene28922 | 0.879111 | 1.63E-69 | -1.69E-46 |
MS.gene050623 | MS.gene28922 | 0.867048 | 1.82E-65 | -1.69E-46 |
MS.gene050642 | MS.gene28922 | -0.851347 | 9.41E-61 | -1.69E-46 |
MS.gene050750 | MS.gene28922 | -0.817893 | 2.60E-52 | -1.69E-46 |
MS.gene050820 | MS.gene28922 | -0.806259 | 8.97E-50 | -1.69E-46 |
MS.gene050953 | MS.gene28922 | -0.822779 | 1.97E-53 | -1.69E-46 |
MS.gene05119 | MS.gene28922 | 0.856456 | 3.18E-62 | -1.69E-46 |
MS.gene051633 | MS.gene28922 | -0.823265 | 1.52E-53 | -1.69E-46 |
MS.gene051983 | MS.gene28922 | -0.863174 | 3.01E-64 | -1.69E-46 |
MS.gene052048 | MS.gene28922 | 0.800275 | 1.56E-48 | -1.69E-46 |
MS.gene052077 | MS.gene28922 | -0.805911 | 1.06E-49 | -1.69E-46 |
MS.gene052176 | MS.gene28922 | -0.861396 | 1.06E-63 | -1.69E-46 |
MS.gene052302 | MS.gene28922 | -0.829305 | 5.54E-55 | -1.69E-46 |
MS.gene052309 | MS.gene28922 | 0.986926 | 1.90E-168 | -1.69E-46 |
MS.gene052358 | MS.gene28922 | 0.915215 | 7.67E-85 | -1.69E-46 |
MS.gene052361 | MS.gene28922 | 0.846689 | 1.86E-59 | -1.69E-46 |
MS.gene052376 | MS.gene28922 | -0.838653 | 2.53E-57 | -1.69E-46 |
MS.gene052491 | MS.gene28922 | 0.800814 | 1.21E-48 | -1.69E-46 |
MS.gene052600 | MS.gene28922 | -0.803016 | 4.26E-49 | -1.69E-46 |
MS.gene052965 | MS.gene28922 | 0.826898 | 2.11E-54 | -1.69E-46 |
MS.gene053054 | MS.gene28922 | 0.832988 | 6.90E-56 | -1.69E-46 |
MS.gene053836 | MS.gene28922 | -0.830821 | 2.37E-55 | -1.69E-46 |
MS.gene054405 | MS.gene28922 | -0.816859 | 4.45E-52 | -1.69E-46 |
MS.gene054930 | MS.gene28922 | -0.837295 | 5.66E-57 | -1.69E-46 |
MS.gene054942 | MS.gene28922 | -0.812647 | 3.82E-51 | -1.69E-46 |
MS.gene054983 | MS.gene28922 | -0.824608 | 7.36E-54 | -1.69E-46 |
MS.gene055701 | MS.gene28922 | -0.80492 | 1.71E-49 | -1.69E-46 |
MS.gene055784 | MS.gene28922 | 0.843273 | 1.55E-58 | -1.69E-46 |
MS.gene055785 | MS.gene28922 | 0.823731 | 1.18E-53 | -1.69E-46 |
MS.gene056069 | MS.gene28922 | 0.83081 | 2.38E-55 | -1.69E-46 |
MS.gene056087 | MS.gene28922 | -0.863293 | 2.76E-64 | -1.69E-46 |
MS.gene056506 | MS.gene28922 | -0.804962 | 1.68E-49 | -1.69E-46 |
MS.gene056969 | MS.gene28922 | 0.830036 | 3.68E-55 | -1.69E-46 |
MS.gene056971 | MS.gene28922 | 0.818171 | 2.25E-52 | -1.69E-46 |
MS.gene056979 | MS.gene28922 | -0.858382 | 8.56E-63 | -1.69E-46 |
MS.gene057060 | MS.gene28922 | -0.814628 | 1.40E-51 | -1.69E-46 |
MS.gene057079 | MS.gene28922 | -0.862872 | 3.73E-64 | -1.69E-46 |
MS.gene057127 | MS.gene28922 | 0.809649 | 1.70E-50 | -1.69E-46 |
MS.gene057555 | MS.gene28922 | -0.800678 | 1.29E-48 | -1.69E-46 |
MS.gene05795 | MS.gene28922 | -0.800722 | 1.26E-48 | -1.69E-46 |
MS.gene057967 | MS.gene28922 | -0.806778 | 6.97E-50 | -1.69E-46 |
MS.gene058200 | MS.gene28922 | -0.810301 | 1.23E-50 | -1.69E-46 |
MS.gene058399 | MS.gene28922 | -0.829574 | 4.77E-55 | -1.69E-46 |
MS.gene058498 | MS.gene28922 | -0.808602 | 2.86E-50 | -1.69E-46 |
MS.gene058549 | MS.gene28922 | -0.824202 | 9.17E-54 | -1.69E-46 |
MS.gene058661 | MS.gene28922 | 0.822995 | 1.76E-53 | -1.69E-46 |
MS.gene059033 | MS.gene28922 | 0.801358 | 9.35E-49 | -1.69E-46 |
MS.gene059249 | MS.gene28922 | -0.814126 | 1.81E-51 | -1.69E-46 |
MS.gene059350 | MS.gene28922 | 0.80379 | 2.95E-49 | -1.69E-46 |
MS.gene05954 | MS.gene28922 | -0.841546 | 4.45E-58 | -1.69E-46 |
MS.gene059569 | MS.gene28922 | -0.820196 | 7.79E-53 | -1.69E-46 |
MS.gene059789 | MS.gene28922 | -0.802116 | 6.54E-49 | -1.69E-46 |
MS.gene05979 | MS.gene28922 | -0.823062 | 1.70E-53 | -1.69E-46 |
MS.gene05984 | MS.gene28922 | -0.800244 | 1.58E-48 | -1.69E-46 |
MS.gene059872 | MS.gene28922 | 0.814433 | 1.54E-51 | -1.69E-46 |
MS.gene059899 | MS.gene28922 | -0.826228 | 3.04E-54 | -1.69E-46 |
MS.gene060137 | MS.gene28922 | 0.807518 | 4.86E-50 | -1.69E-46 |
MS.gene060297 | MS.gene28922 | -0.808624 | 2.83E-50 | -1.69E-46 |
MS.gene060572 | MS.gene28922 | -0.826802 | 2.22E-54 | -1.69E-46 |
MS.gene060586 | MS.gene28922 | -0.818657 | 1.75E-52 | -1.69E-46 |
MS.gene060634 | MS.gene28922 | 0.83187 | 1.31E-55 | -1.69E-46 |
MS.gene060879 | MS.gene28922 | -0.814612 | 1.41E-51 | -1.69E-46 |
MS.gene061040 | MS.gene28922 | 0.902368 | 1.04E-78 | -1.69E-46 |
MS.gene061114 | MS.gene28922 | 0.846717 | 1.82E-59 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28922.t1 | MTR_4g076210 | 98.146 | 809 | 5 | 1 | 1 | 809 | 1 | 799 | 0.0 | 1615 |
MS.gene28922.t1 | MTR_3g109922 | 33.702 | 724 | 405 | 16 | 12 | 679 | 18 | 722 | 7.14e-111 | 358 |
MS.gene28922.t1 | MTR_5g079920 | 34.389 | 221 | 128 | 4 | 24 | 243 | 41 | 245 | 2.36e-29 | 126 |
MS.gene28922.t1 | MTR_5g079920 | 29.697 | 330 | 201 | 7 | 238 | 547 | 322 | 640 | 1.30e-22 | 104 |
MS.gene28922.t1 | MTR_4g008250 | 21.218 | 476 | 312 | 12 | 19 | 466 | 21 | 461 | 8.43e-15 | 79.3 |
MS.gene28922.t1 | MTR_1g040420 | 100.000 | 29 | 0 | 0 | 1 | 29 | 1 | 29 | 5.44e-13 | 65.1 |
MS.gene28922.t1 | MTR_3g118335 | 96.552 | 29 | 1 | 0 | 1 | 29 | 1 | 29 | 2.37e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28922.t1 | AT4G23460 | 87.331 | 813 | 82 | 4 | 1 | 809 | 1 | 796 | 0.0 | 1415 |
MS.gene28922.t1 | AT4G11380 | 87.531 | 810 | 87 | 3 | 1 | 809 | 1 | 797 | 0.0 | 1391 |
MS.gene28922.t1 | AT4G11380 | 85.216 | 832 | 87 | 4 | 1 | 809 | 1 | 819 | 0.0 | 1377 |
MS.gene28922.t1 | AT4G23460 | 87.147 | 708 | 80 | 3 | 106 | 809 | 2 | 702 | 0.0 | 1237 |
MS.gene28922.t1 | AT5G11490 | 35.430 | 604 | 354 | 13 | 12 | 595 | 17 | 604 | 2.02e-106 | 346 |
MS.gene28922.t1 | AT5G11490 | 35.430 | 604 | 354 | 13 | 12 | 595 | 17 | 604 | 2.29e-106 | 347 |
MS.gene28922.t1 | AT5G11490 | 35.866 | 566 | 334 | 12 | 43 | 595 | 1 | 550 | 2.78e-101 | 332 |
MS.gene28922.t1 | AT3G55480 | 36.199 | 221 | 124 | 4 | 24 | 243 | 41 | 245 | 2.99e-28 | 122 |
MS.gene28922.t1 | AT3G55480 | 28.399 | 331 | 203 | 9 | 251 | 558 | 339 | 658 | 3.34e-22 | 103 |
MS.gene28922.t1 | AT3G55480 | 28.399 | 331 | 203 | 9 | 251 | 558 | 211 | 530 | 4.22e-22 | 102 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGCTCTCTCTAATTTAA+TGG | 0.158134 | 4.4:+34237853 | None:intergenic |
CAAATGTGTTCTTGTTAAAT+TGG | 0.165232 | 4.4:+34235010 | None:intergenic |
TTGCATGCAAACAGAAAATT+TGG | 0.170636 | 4.4:-34241863 | MS.gene28922:CDS |
CGAGCTTCTTGAAAGTTTCT+TGG | 0.175476 | 4.4:-34237414 | MS.gene28922:CDS |
GACCAGCCAGCTGCTCCTTC+AGG | 0.234375 | 4.4:-34235992 | MS.gene28922:CDS |
CTCACAAAGAGTTGCAATTA+TGG | 0.248644 | 4.4:+34237606 | None:intergenic |
AATTCTTGCACATGAAATTA+AGG | 0.258946 | 4.4:-34238721 | MS.gene28922:intron |
ACATTTGGTCTTGCAGCTGC+TGG | 0.280676 | 4.4:-34234994 | MS.gene28922:CDS |
TGATCCTATATATGTGAAAA+TGG | 0.282338 | 4.4:-34238558 | MS.gene28922:CDS |
TTGGACTAGCGCAGGTTCTT+CGG | 0.290227 | 4.4:+34237382 | None:intergenic |
AATTCTCAAGTTCCACTTGA+TGG | 0.296428 | 4.4:-34235042 | MS.gene28922:CDS |
TTAAGCTCTTCTTTGAGTTC+AGG | 0.296920 | 4.4:+34243260 | None:intergenic |
ACAGCTAAGGCACGAATTAA+AGG | 0.297318 | 4.4:+34241469 | None:intergenic |
AAGGCACGAATTAAAGGATT+TGG | 0.302488 | 4.4:+34241475 | None:intergenic |
TGGACTAGCGCAGGTTCTTC+GGG | 0.303916 | 4.4:+34237383 | None:intergenic |
TGCGGCACTCGCTGAAATTC+AGG | 0.309014 | 4.4:-34241084 | MS.gene28922:CDS |
GCATCAATGATCTGGATAAT+TGG | 0.309591 | 4.4:-34237467 | MS.gene28922:CDS |
AGCTTACCTGGTCTATATTT+CGG | 0.310084 | 4.4:+34238501 | None:intergenic |
GCGGACCTTGGGACATGTTC+TGG | 0.317144 | 4.4:+34234822 | None:intergenic |
GGCCCTCAGTTGGCTTCTTA+AGG | 0.329378 | 4.4:+34237327 | None:intergenic |
GGGCCCACAGCAGATGATTC+AGG | 0.341638 | 4.4:-34237309 | MS.gene28922:intron |
TGCAGCTGCTGGGCCCCTGC+AGG | 0.346760 | 4.4:-34234983 | MS.gene28922:intron |
AAATCAGTGCACAGCTTACT+AGG | 0.371520 | 4.4:-34235104 | MS.gene28922:CDS |
ACTGCCTGCTTCAACTGGTC+AGG | 0.372776 | 4.4:-34235133 | MS.gene28922:CDS |
AGAAAGGCTGTTCGTGCAAT+TGG | 0.378274 | 4.4:-34237884 | MS.gene28922:CDS |
CAATTTAACAAGAACACATT+TGG | 0.378772 | 4.4:-34235009 | MS.gene28922:CDS |
GTGCGGGTAACAAATGCTTC+AGG | 0.379627 | 4.4:+34236232 | None:intergenic |
ATCAAATCACCAAGTAAATC+TGG | 0.390549 | 4.4:+34236046 | None:intergenic |
GAAAGAAAACAATACGTGTT+GGG | 0.396780 | 4.4:+34237731 | None:intergenic |
ACCAGCCAGCTGCTCCTTCA+GGG | 0.397538 | 4.4:-34235991 | MS.gene28922:intron |
CGACAGTACAACTGCACAAT+TGG | 0.398220 | 4.4:+34239033 | None:intergenic |
AGTGTCCTAGCTGATGTTCC+AGG | 0.404154 | 4.4:+34234863 | None:intergenic |
AGATTTACTTGGTGATTTGA+TGG | 0.408236 | 4.4:-34236044 | MS.gene28922:CDS |
TATGCACGATCTCGCAAATC+AGG | 0.410180 | 4.4:+34236703 | None:intergenic |
TGTTACCCGCACACTTGCTT+CGG | 0.411432 | 4.4:-34236221 | MS.gene28922:CDS |
TAAGCTCTTCTTTGAGTTCA+GGG | 0.415409 | 4.4:+34243261 | None:intergenic |
GAGATCGTGCATACATATAT+TGG | 0.416999 | 4.4:-34236693 | MS.gene28922:CDS |
ATTTCATGTGCAAGAATTGT+CGG | 0.420714 | 4.4:+34238726 | None:intergenic |
CTGGACAGGCATCAATGATC+TGG | 0.425383 | 4.4:-34237475 | MS.gene28922:intron |
GCCTTAGCTGTGCGAACAAT+GGG | 0.427730 | 4.4:-34241457 | MS.gene28922:CDS |
ATCTGCTGTGGGCCCTCAGT+TGG | 0.429553 | 4.4:+34237317 | None:intergenic |
AGTTGTACTGTCGGCTGTTA+AGG | 0.429858 | 4.4:-34239023 | MS.gene28922:intron |
GTTGTACTGCCTGCTTCAAC+TGG | 0.430164 | 4.4:-34235138 | MS.gene28922:CDS |
GCTGCTGTCTTGCGAACATA+TGG | 0.433079 | 4.4:+34241224 | None:intergenic |
TCATCTGTAAATCCTGCTAA+TGG | 0.446043 | 4.4:-34236151 | MS.gene28922:CDS |
CTTCGTGGTGGAGAAGTACT+TGG | 0.446421 | 4.4:+34243295 | None:intergenic |
GACAACATATACCTTGGCTT+CGG | 0.450600 | 4.4:+34237561 | None:intergenic |
CATTTGGTCTTGCAGCTGCT+GGG | 0.453532 | 4.4:-34234993 | MS.gene28922:CDS |
GTTGAAGCAGGCAGTACAAC+GGG | 0.454683 | 4.4:+34235141 | None:intergenic |
GTAGATGATCCTTCAACAAA+TGG | 0.459935 | 4.4:-34238883 | MS.gene28922:intron |
GCACCTTTAGACATCTTTGA+AGG | 0.459959 | 4.4:+34241392 | None:intergenic |
GTAAATCCTGCTAATGGCCC+TGG | 0.460366 | 4.4:-34236145 | MS.gene28922:CDS |
ACAACATATACCTTGGCTTC+GGG | 0.464005 | 4.4:+34237562 | None:intergenic |
AGATGCAGGTATTGTATAGC+TGG | 0.467714 | 4.4:+34236108 | None:intergenic |
AGGGCAACATATTGTATCTC+AGG | 0.473365 | 4.4:+34238780 | None:intergenic |
AACTGAGCTAGGCGGACCTT+GGG | 0.475776 | 4.4:+34234811 | None:intergenic |
GATTTACTTGGTGATTTGAT+GGG | 0.477092 | 4.4:-34236043 | MS.gene28922:CDS |
GAAGCTGGTGCCACAGATGC+AGG | 0.477195 | 4.4:+34236094 | None:intergenic |
ACCCTGAAGGAGCAGCTGGC+TGG | 0.481300 | 4.4:+34235990 | None:intergenic |
CGCAGTAAATACATTTGTAA+AGG | 0.483737 | 4.4:-34241773 | MS.gene28922:CDS |
GTACTTCTCCACCACGAAGA+AGG | 0.486120 | 4.4:-34243291 | MS.gene28922:CDS |
GTGAAAAGAGATCAAATGAA+TGG | 0.487560 | 4.4:+34234662 | None:intergenic |
AACAACCATTGGATTATTGT+CGG | 0.490394 | 4.4:+34241118 | None:intergenic |
CGAGTATAGCAAGGTCCGGC+TGG | 0.491866 | 4.4:+34241794 | None:intergenic |
CTGCCTGCTTCAACTGGTCA+GGG | 0.498842 | 4.4:-34235132 | MS.gene28922:CDS |
GCACCAGTGCCAGATTTACT+TGG | 0.499633 | 4.4:-34236055 | MS.gene28922:CDS |
CACCTTTAGACATCTTTGAA+GGG | 0.501807 | 4.4:+34241393 | None:intergenic |
CAGGTTCCACAATTGCAACC+TGG | 0.502234 | 4.4:-34234881 | MS.gene28922:CDS |
GGTGACCCAGGGCCATTAGC+AGG | 0.502483 | 4.4:+34236139 | None:intergenic |
ACTCACCCTGAAGGAGCAGC+TGG | 0.503317 | 4.4:+34235986 | None:intergenic |
ATACAGCTTTGCAACACAAA+TGG | 0.504157 | 4.4:+34241202 | None:intergenic |
TGCGGGTAACAAATGCTTCA+GGG | 0.508754 | 4.4:+34236233 | None:intergenic |
ATGCAGAGTTAGTTGAGGAC+AGG | 0.508869 | 4.4:-34241172 | MS.gene28922:CDS |
AAACTGAGCTAGGCGGACCT+TGG | 0.509914 | 4.4:+34234810 | None:intergenic |
TCAATCTTATTGTACAAAGA+AGG | 0.511281 | 4.4:-34238749 | MS.gene28922:CDS |
CAATAAGATTGATATTTCGC+AGG | 0.512583 | 4.4:+34238760 | None:intergenic |
GCAACCTGTAAAACTGAGCT+AGG | 0.514067 | 4.4:+34234800 | None:intergenic |
AGCTAGGACACTCCTTCCTA+TGG | 0.514389 | 4.4:-34234852 | MS.gene28922:CDS |
ACAGCATTAGCAACAACCAT+TGG | 0.514656 | 4.4:+34241107 | None:intergenic |
GCAGAAGGTGGAGGTGAAGC+TGG | 0.515961 | 4.4:+34236079 | None:intergenic |
TGATGAGTTCCATTTGTTGA+AGG | 0.516207 | 4.4:+34238874 | None:intergenic |
GACTCGGATTCACTTCCATC+AGG | 0.516290 | 4.4:+34236172 | None:intergenic |
ATGACTAGTGATCTCAAAGA+TGG | 0.516546 | 4.4:+34241046 | None:intergenic |
TCACCAGCACTGATGTGGTC+CGG | 0.520844 | 4.4:-34238854 | MS.gene28922:CDS |
TGCCTTAGCTGTGCGAACAA+TGG | 0.521875 | 4.4:-34241458 | MS.gene28922:CDS |
CAATTGGCATGCTGTAACCG+TGG | 0.521968 | 4.4:+34239049 | None:intergenic |
TTTGAGTCATCAGTTATCAC+AGG | 0.523584 | 4.4:+34236328 | None:intergenic |
AGGGATTTCACCCTTCTTCG+TGG | 0.524514 | 4.4:+34243280 | None:intergenic |
TAGCTGTCAGCAATTGTAGT+TGG | 0.528611 | 4.4:+34237363 | None:intergenic |
ACTTGGTGATTTGATGGGCA+TGG | 0.533230 | 4.4:-34236038 | MS.gene28922:CDS |
TCCCATTGTTCGCACAGCTA+AGG | 0.534752 | 4.4:+34241456 | None:intergenic |
ATTCCGGACCACATCAGTGC+TGG | 0.535891 | 4.4:+34238851 | None:intergenic |
AGAGCTTAATTCTCAGTACA+AGG | 0.537889 | 4.4:-34243246 | MS.gene28922:intron |
AGCAGGATTTACAGATGACT+CGG | 0.538019 | 4.4:+34236156 | None:intergenic |
TACTTCTCCACCACGAAGAA+GGG | 0.538973 | 4.4:-34243290 | MS.gene28922:CDS |
AGAAGCTCGTCAAGTAGAGA+AGG | 0.541367 | 4.4:+34236295 | None:intergenic |
ATTGTATAGCTGGAAGTAGG+AGG | 0.543155 | 4.4:+34236118 | None:intergenic |
CTTGGCTTCGGGCTCATCCA+AGG | 0.543269 | 4.4:+34237573 | None:intergenic |
TCCCCTTCAAAGATGTCTAA+AGG | 0.544453 | 4.4:-34241395 | MS.gene28922:intron |
GTGATTGCTGCTATGACGGT+TGG | 0.547275 | 4.4:-34241922 | MS.gene28922:CDS |
GGCAGTACAACGGGCAAAGG+AGG | 0.547858 | 4.4:+34235150 | None:intergenic |
CAGTGCACAGCTTACTAGGC+GGG | 0.548300 | 4.4:-34235100 | MS.gene28922:CDS |
CTGGAAGTAGGAGGTGACCC+AGG | 0.552629 | 4.4:+34236127 | None:intergenic |
AGTAAATTATGTGGTTCAAG+AGG | 0.554444 | 4.4:-34237789 | MS.gene28922:CDS |
TCTGGCACTGGTGCAGCAGA+AGG | 0.554699 | 4.4:+34236064 | None:intergenic |
AATTGTAGTTGGACTAGCGC+AGG | 0.556300 | 4.4:+34237374 | None:intergenic |
AATAAGATTGATATTTCGCA+GGG | 0.557713 | 4.4:+34238761 | None:intergenic |
GCAGGCAGTACAACGGGCAA+AGG | 0.558226 | 4.4:+34235147 | None:intergenic |
AAAATATACAGACAAAAGAA+TGG | 0.558273 | 4.4:+34241735 | None:intergenic |
ACTGCGAGTATAGCAAGGTC+CGG | 0.558284 | 4.4:+34241790 | None:intergenic |
TGCAGAGTTAGTTGAGGACA+GGG | 0.558569 | 4.4:-34241171 | MS.gene28922:CDS |
TTGTCTTCTCCAGGCAGCTA+AGG | 0.559259 | 4.4:-34236371 | MS.gene28922:intron |
CTGGGCCGAAGCAAGTGTGC+GGG | 0.559342 | 4.4:+34236216 | None:intergenic |
GGCACTGGTGCAGCAGAAGG+TGG | 0.559619 | 4.4:+34236067 | None:intergenic |
AAACCCTGACCAGTTGAAGC+AGG | 0.559737 | 4.4:+34235129 | None:intergenic |
AATTGGCATGCTGTAACCGT+GGG | 0.561317 | 4.4:+34239050 | None:intergenic |
GGTATTGTATAGCTGGAAGT+AGG | 0.565421 | 4.4:+34236115 | None:intergenic |
TTGTGAGAGCTTAGACACCT+TGG | 0.567706 | 4.4:-34237590 | MS.gene28922:CDS |
CTTGGATGAGCCCGAAGCCA+AGG | 0.568294 | 4.4:-34237572 | MS.gene28922:intron |
GGAGCAGCTGGCTGGTCAAG+AGG | 0.568350 | 4.4:+34235998 | None:intergenic |
TTCCTTAAGAAGCCAACTGA+GGG | 0.569283 | 4.4:-34237329 | MS.gene28922:CDS |
TCACCAAGTAAATCTGGCAC+TGG | 0.569726 | 4.4:+34236052 | None:intergenic |
TAAATCCTGCTAATGGCCCT+GGG | 0.570659 | 4.4:-34236144 | MS.gene28922:CDS |
TCTGGGCCGAAGCAAGTGTG+CGG | 0.572053 | 4.4:+34236215 | None:intergenic |
CAAGATAAAAGTAAATTATG+TGG | 0.572985 | 4.4:-34237798 | MS.gene28922:CDS |
GATGTTCCAGGTTGCAATTG+TGG | 0.573549 | 4.4:+34234875 | None:intergenic |
AGGACCTGAATCATCTGCTG+TGG | 0.575338 | 4.4:+34237305 | None:intergenic |
GAGAGTAATGTCACAAGAGG+AGG | 0.579273 | 4.4:+34238810 | None:intergenic |
ACCTTTAGACATCTTTGAAG+GGG | 0.581523 | 4.4:+34241394 | None:intergenic |
TGCTGCTATGACGGTTGGAA+AGG | 0.583395 | 4.4:-34241917 | MS.gene28922:CDS |
GGACCTGAATCATCTGCTGT+GGG | 0.583785 | 4.4:+34237306 | None:intergenic |
TGGATCATGAATCCATCAAG+TGG | 0.585680 | 4.4:+34235030 | None:intergenic |
AAGAGATCAAATGAATGGAA+AGG | 0.586119 | 4.4:+34234667 | None:intergenic |
GTATGCAATATTAACCTGCA+GGG | 0.586830 | 4.4:+34234969 | None:intergenic |
CTATACAATACCTGCATCTG+TGG | 0.587131 | 4.4:-34236104 | MS.gene28922:CDS |
GATATCCGACAATAATCCAA+TGG | 0.589535 | 4.4:-34241123 | MS.gene28922:CDS |
GAAGATGATGACTATCCTGA+TGG | 0.589822 | 4.4:-34236187 | MS.gene28922:CDS |
GGTTGTTGCTAATGCTGTTG+CGG | 0.590538 | 4.4:-34241102 | MS.gene28922:CDS |
AAAGAAAACAATACGTGTTG+GGG | 0.594450 | 4.4:+34237732 | None:intergenic |
AAATTATGCAAAGAGCCAGC+CGG | 0.594573 | 4.4:-34241809 | MS.gene28922:CDS |
AAACCTCAGGGTCAGTTGAG+AGG | 0.598260 | 4.4:+34236665 | None:intergenic |
ATGGAAAGGTATATACCTCA+AGG | 0.599552 | 4.4:+34234681 | None:intergenic |
CAAGGCTGCTGATGCACGTG+AGG | 0.600260 | 4.4:-34239098 | MS.gene28922:CDS |
ACGCTCCATTCTACCATCCT+CGG | 0.600658 | 4.4:+34234712 | None:intergenic |
GGACGCTCTTTCTAGATACA+AGG | 0.603895 | 4.4:-34239116 | MS.gene28922:CDS |
TGAAATACCACACAGGCTGT+TGG | 0.604545 | 4.4:+34234765 | None:intergenic |
ACTGGTGCAGCAGAAGGTGG+AGG | 0.605496 | 4.4:+34236070 | None:intergenic |
GATTTCACCCTTCTTCGTGG+TGG | 0.607571 | 4.4:+34243283 | None:intergenic |
AGGACGGAGCAAAGATGAGT+CGG | 0.608099 | 4.4:-34243325 | None:intergenic |
AAAAGTGATTGCTGCTATGA+CGG | 0.608991 | 4.4:-34241926 | MS.gene28922:CDS |
TGGAAGTAGGAGGTGACCCA+GGG | 0.612011 | 4.4:+34236128 | None:intergenic |
TGACTAGTGATCTCAAAGAT+GGG | 0.615432 | 4.4:+34241047 | None:intergenic |
GGTATATACCTCAAGGAAAG+CGG | 0.620389 | 4.4:+34234688 | None:intergenic |
GGAGCGTGCCGCTTTCCTTG+AGG | 0.622922 | 4.4:-34234696 | MS.gene28922:CDS |
ACTCATCACCAGCACTGATG+TGG | 0.625166 | 4.4:-34238859 | MS.gene28922:CDS |
GCACAGCTTACTAGGCGGGA+TGG | 0.629272 | 4.4:-34235096 | MS.gene28922:CDS |
ATGTTCTGGAACATAACCAT+AGG | 0.629968 | 4.4:+34234836 | None:intergenic |
TTTCCTTAAGAAGCCAACTG+AGG | 0.630085 | 4.4:-34237330 | MS.gene28922:CDS |
CAATTGTGCAGTTGTACTGT+CGG | 0.632558 | 4.4:-34239032 | MS.gene28922:CDS |
GCTGAGAGTAATGTCACAAG+AGG | 0.637155 | 4.4:+34238807 | None:intergenic |
CATAAATGCAGAGTTAGTTG+AGG | 0.639011 | 4.4:-34241177 | MS.gene28922:CDS |
TATTTACTGCGAGTATAGCA+AGG | 0.641042 | 4.4:+34241785 | None:intergenic |
GCGGGTAACAAATGCTTCAG+GGG | 0.645661 | 4.4:+34236234 | None:intergenic |
TCTGGAACATAACCATAGGA+AGG | 0.648359 | 4.4:+34234840 | None:intergenic |
TATGCAATATTAACCTGCAG+GGG | 0.649782 | 4.4:+34234970 | None:intergenic |
CTGGATAATTGGTGAATATG+CGG | 0.650182 | 4.4:-34237456 | MS.gene28922:CDS |
TACATTCATTTAATGCAGTG+AGG | 0.651493 | 4.4:+34241009 | None:intergenic |
TCTCCTCTCAACTGACCCTG+AGG | 0.655441 | 4.4:-34236668 | MS.gene28922:intron |
CGGGTAACAAATGCTTCAGG+GGG | 0.655514 | 4.4:+34236235 | None:intergenic |
AAAACAACCAACAGCCTGTG+TGG | 0.657599 | 4.4:-34234772 | MS.gene28922:CDS |
AAGGGGATCACATAGATACT+CGG | 0.661548 | 4.4:+34241411 | None:intergenic |
ATGTTCCAGAACATGTCCCA+AGG | 0.663630 | 4.4:-34234827 | MS.gene28922:CDS |
AGTTGAAGCAGGCAGTACAA+CGG | 0.667803 | 4.4:+34235140 | None:intergenic |
TTCAGACCGAAATATAGACC+AGG | 0.671852 | 4.4:-34238507 | MS.gene28922:intron |
AACAATGGGATGCATTCGTG+TGG | 0.671970 | 4.4:-34241443 | MS.gene28922:CDS |
GGACTAGCGCAGGTTCTTCG+GGG | 0.672753 | 4.4:+34237384 | None:intergenic |
TGCAACCTGGAACATCAGCT+AGG | 0.680770 | 4.4:-34234868 | MS.gene28922:CDS |
CGTCAAGTAGAGAAGGATCG+AGG | 0.683311 | 4.4:+34236302 | None:intergenic |
GCAGAGTTAGTTGAGGACAG+GGG | 0.685720 | 4.4:-34241170 | MS.gene28922:CDS |
TTGTAGAAAGAGTTACCCCA+CGG | 0.695569 | 4.4:-34239066 | MS.gene28922:CDS |
ACCTGTAAAACTGAGCTAGG+CGG | 0.713408 | 4.4:+34234803 | None:intergenic |
ATTGGCATGCTGTAACCGTG+GGG | 0.715992 | 4.4:+34239051 | None:intergenic |
TCAGTGCACAGCTTACTAGG+CGG | 0.719987 | 4.4:-34235101 | MS.gene28922:CDS |
TTATCGTTGAAATACCACAC+AGG | 0.723681 | 4.4:+34234758 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 34234673 | 34243333 | 34234673 | ID=MS.gene28922 |
chr4.4 | mRNA | 34234673 | 34243333 | 34234673 | ID=MS.gene28922.t1;Parent=MS.gene28922 |
chr4.4 | exon | 34243247 | 34243333 | 34243247 | ID=MS.gene28922.t1.exon1;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34243247 | 34243333 | 34243247 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34241744 | 34241971 | 34241744 | ID=MS.gene28922.t1.exon2;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34241744 | 34241971 | 34241744 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34241396 | 34241509 | 34241396 | ID=MS.gene28922.t1.exon3;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34241396 | 34241509 | 34241396 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34241005 | 34241255 | 34241005 | ID=MS.gene28922.t1.exon4;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34241005 | 34241255 | 34241005 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34239024 | 34239159 | 34239024 | ID=MS.gene28922.t1.exon5;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34239024 | 34239159 | 34239024 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34238722 | 34238901 | 34238722 | ID=MS.gene28922.t1.exon6;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34238722 | 34238901 | 34238722 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34238508 | 34238600 | 34238508 | ID=MS.gene28922.t1.exon7;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34238508 | 34238600 | 34238508 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34237746 | 34237957 | 34237746 | ID=MS.gene28922.t1.exon8;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34237746 | 34237957 | 34237746 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34237573 | 34237636 | 34237573 | ID=MS.gene28922.t1.exon9;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34237573 | 34237636 | 34237573 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34237310 | 34237489 | 34237310 | ID=MS.gene28922.t1.exon10;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34237310 | 34237489 | 34237310 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34236669 | 34236761 | 34236669 | ID=MS.gene28922.t1.exon11;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34236669 | 34236761 | 34236669 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34235992 | 34236380 | 34235992 | ID=MS.gene28922.t1.exon12;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34235992 | 34236380 | 34235992 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34234984 | 34235173 | 34234984 | ID=MS.gene28922.t1.exon13;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34234984 | 34235173 | 34234984 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
chr4.4 | exon | 34234673 | 34234900 | 34234673 | ID=MS.gene28922.t1.exon14;Parent=MS.gene28922.t1 |
chr4.4 | CDS | 34234673 | 34234900 | 34234673 | ID=cds.MS.gene28922.t1;Parent=MS.gene28922.t1 |
Gene Sequence |
Protein sequence |