AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60690.t1 MTR_1g098590 96.761 247 4 1 1 247 1 243 2.05e-172 476
MS.gene60690.t1 MTR_1g098590 96.396 222 4 1 1 222 1 218 5.93e-153 426
MS.gene60690.t1 MTR_1g098590 93.833 227 10 1 1 227 1 223 3.86e-152 424
MS.gene60690.t1 MTR_4g094390 40.206 194 58 5 44 222 36 186 6.74e-24 95.9
MS.gene60690.t1 MTR_8g043960 31.356 236 133 4 28 244 85 310 1.92e-17 80.9
MS.gene60690.t1 MTR_3g010660 31.628 215 88 5 42 211 96 296 6.04e-16 76.6
MS.gene60690.t1 MTR_3g101780 43.697 119 58 3 133 247 318 431 1.50e-15 76.3
MS.gene60690.t1 MTR_2g086390 32.273 220 120 8 23 225 62 269 5.46e-15 73.6
MS.gene60690.t1 MTR_5g088230 35.294 187 84 6 32 211 82 238 6.12e-13 67.4
MS.gene60690.t1 MTR_4g085910 56.250 64 24 1 150 213 289 348 6.53e-13 68.6
MS.gene60690.t1 MTR_5g088230 35.294 187 84 6 32 211 87 243 6.63e-13 67.4
MS.gene60690.t1 MTR_2g086390 33.168 202 106 8 23 207 62 251 9.25e-13 67.4
MS.gene60690.t1 MTR_7g088090 47.674 86 31 2 161 244 244 317 6.14e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60690.t1 AT5G44080 46.545 275 82 9 9 247 70 315 1.42e-65 207
MS.gene60690.t1 AT1G03970 48.729 236 86 8 19 247 63 270 5.23e-53 174
MS.gene60690.t1 AT2G36270 44.444 126 60 4 127 249 320 438 1.56e-16 79.3
MS.gene60690.t1 AT2G36270 44.444 126 60 4 127 249 320 438 1.56e-16 79.3
MS.gene60690.t1 AT1G45249 43.548 124 58 3 127 247 302 416 3.63e-16 78.2
MS.gene60690.t1 AT1G45249 43.548 124 58 3 127 247 317 431 4.16e-16 78.2
MS.gene60690.t1 AT1G45249 43.548 124 58 3 127 247 317 431 4.16e-16 78.2
MS.gene60690.t1 AT2G36270 50.000 96 45 2 127 222 320 412 3.33e-15 75.5
MS.gene60690.t1 AT3G56850 31.169 231 104 6 42 244 91 294 9.34e-15 73.2
MS.gene60690.t1 AT1G45249 40.000 135 58 4 127 247 302 427 2.00e-13 70.1
MS.gene60690.t1 AT1G49720 45.361 97 48 2 153 247 299 392 4.18e-13 68.9
MS.gene60690.t1 AT1G49720 45.361 97 48 2 153 247 299 392 4.18e-13 68.9
MS.gene60690.t1 AT2G41070 31.944 216 102 8 42 244 85 268 6.19e-13 67.8
MS.gene60690.t1 AT3G19290 45.455 99 45 3 153 247 339 432 6.84e-13 68.6
MS.gene60690.t1 AT2G41070 31.944 216 102 8 42 244 76 259 6.98e-13 67.4
MS.gene60690.t1 AT2G41070 31.944 216 102 8 42 244 76 259 6.98e-13 67.4
MS.gene60690.t1 AT2G41070 31.944 216 102 8 42 244 76 259 6.98e-13 67.4
MS.gene60690.t1 AT4G34000 53.125 64 30 0 161 224 368 431 1.48e-12 67.8
MS.gene60690.t1 AT4G34000 53.125 64 30 0 161 224 368 431 1.48e-12 67.8
MS.gene60690.t1 AT4G34000 53.125 64 30 0 161 224 368 431 1.48e-12 67.8
MS.gene60690.t1 AT3G19290 59.016 61 25 0 153 213 339 399 1.62e-12 67.4
MS.gene60690.t1 AT3G19290 59.016 61 25 0 153 213 339 399 1.93e-12 67.4
MS.gene60690.t1 AT3G19290 59.016 61 25 0 153 213 339 399 1.93e-12 67.4
MS.gene60690.t1 AT2G41070 32.432 185 90 6 42 213 76 238 3.97e-12 65.1
MS.gene60690.t1 AT4G34000 45.946 74 33 1 161 227 368 441 1.44e-11 64.7
MS.gene60690.t1 AT1G49720 54.688 64 29 0 153 216 299 362 4.56e-11 63.2

Find 104 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGACGATTCCGTTAT+CGG 0.332969 1.2:+70818044 MS.gene60690:CDS
TTATCCAATTGCTCCATAAC+AGG 0.338573 1.2:-70818231 None:intergenic
CAAGGAATTGAAAACGTTGA+TGG 0.345371 1.2:+70818111 MS.gene60690:CDS
GATTTGATCGTCGAGGAAAT+TGG 0.346078 1.2:-70817839 None:intergenic
AACGTTGATGGGTCGGTGAT+AGG 0.356163 1.2:+70818123 MS.gene60690:CDS
GATGGGTCGGTGATAGGGTT+TGG 0.356739 1.2:+70818129 MS.gene60690:CDS
CGGTGATAGGGTTTGGGAAT+GGG 0.358384 1.2:+70818136 MS.gene60690:CDS
GTGGAAATGGTTGAAGGTGG+GGG 0.368454 1.2:+70818189 MS.gene60690:CDS
ATGGGTCGGTGATAGGGTTT+GGG 0.380377 1.2:+70818130 MS.gene60690:CDS
GGCCTTCGCTGCTCCACAAC+AGG 0.380747 1.2:-70822129 None:intergenic
TTAGGCTTATCAAGTGGAAT+TGG 0.384866 1.2:+70818553 MS.gene60690:intron
GAAGAGAGGACGGCCTGTTA+TGG 0.389128 1.2:+70818218 MS.gene60690:CDS
ATGGCAATGGGAATGTGAAT+GGG 0.390238 1.2:+70818166 MS.gene60690:CDS
CTCGAACCGTCGACAATGTC+TGG 0.393708 1.2:+70817887 MS.gene60690:CDS
GGGGTGGAAATGGTTGAAGG+TGG 0.394857 1.2:+70818186 MS.gene60690:CDS
TGTGCAGGCTGAGAGGAAAA+AGG 0.400339 1.2:+70819513 MS.gene60690:intron
GGTGGAAATGGTTGAAGGTG+GGG 0.410518 1.2:+70818188 MS.gene60690:CDS
GAGAATCTGCTGCTAGGTCT+AGG 0.414539 1.2:+70818292 MS.gene60690:CDS
TGAGGATGAGGAGGAGGGTG+AGG 0.414838 1.2:+70818017 MS.gene60690:CDS
TCGGTGATAGGGTTTGGGAA+TGG 0.430970 1.2:+70818135 MS.gene60690:CDS
GAATGTGAATGGGGTGGAAA+TGG 0.432712 1.2:+70818176 MS.gene60690:CDS
GCGGTGGTGAAGTGAGGTTT+AGG 0.434316 1.2:-70817817 None:intergenic
AATGGCAATGGGAATGTGAA+TGG 0.440487 1.2:+70818165 MS.gene60690:CDS
ACGGCCTGTTATGGAGCAAT+TGG 0.442422 1.2:+70818227 MS.gene60690:CDS
TAGGGTTTGGGAATGGGAAT+GGG 0.448106 1.2:+70818142 MS.gene60690:CDS
ATGGGAATGGGAATGGCAAT+GGG 0.449145 1.2:+70818154 MS.gene60690:CDS
AATGGGAATGGGAATGGCAA+TGG 0.463203 1.2:+70818153 MS.gene60690:CDS
CCACTGAGCGTCTCCGATAA+CGG 0.464675 1.2:-70818057 None:intergenic
TGCGGTTGAGGATGAGGAGG+AGG 0.464821 1.2:+70818011 MS.gene60690:CDS
ATAGGGTTTGGGAATGGGAA+TGG 0.466638 1.2:+70818141 MS.gene60690:CDS
TGGAAATGGTTGAAGGTGGG+GGG 0.467922 1.2:+70818190 MS.gene60690:CDS
ACGTTGATGGGTCGGTGATA+GGG 0.467935 1.2:+70818124 MS.gene60690:CDS
TCAAGTGGAATTGGAGTCCT+TGG 0.472571 1.2:+70818562 MS.gene60690:CDS
AGATGGAGAAGAAGGTGGAT+CGG 0.476558 1.2:-70817794 None:intergenic
GGGTGGAAATGGTTGAAGGT+GGG 0.482957 1.2:+70818187 MS.gene60690:CDS
ATGTGCTAGTAGAGGGCAAA+GGG 0.484672 1.2:+70822460 MS.gene60690:CDS
TGTGAAAGCTGGTGCGGTTG+AGG 0.485583 1.2:+70817999 MS.gene60690:CDS
GGTTTAGGAGATGGAGAAGA+AGG 0.490179 1.2:-70817802 None:intergenic
AGCACATTTGCAGTCTGCAC+AGG 0.493719 1.2:-70822444 None:intergenic
TGACAAGTTGATGAAGGAAA+AGG 0.495815 1.2:+70818607 MS.gene60690:CDS
GTGAAGTGAGGTTTAGGAGA+TGG 0.499875 1.2:-70817811 None:intergenic
TAGGTCTAGGGAACGCAAGC+AGG 0.503430 1.2:+70818305 MS.gene60690:CDS
TCGAGGAGTGGCGACGGCGT+CGG 0.506745 1.2:-70817869 None:intergenic
TTTGGGAATGGGAATGGGAA+TGG 0.507407 1.2:+70818147 MS.gene60690:CDS
GGAAAATGACAAGTTGATGA+AGG 0.507651 1.2:+70818601 MS.gene60690:CDS
AGCTGGTGCGGTTGAGGATG+AGG 0.510481 1.2:+70818005 MS.gene60690:CDS
GCGATGTGATCTCCGGCGAT+AGG 0.515092 1.2:+70817926 MS.gene60690:CDS
AATGGGGTGGAAATGGTTGA+AGG 0.515608 1.2:+70818183 MS.gene60690:CDS
TTCTTTACACTCCCTATCGC+CGG 0.515808 1.2:-70817938 None:intergenic
GAGTGGCGACGGCGTCGGCG+AGG 0.520677 1.2:-70817864 None:intergenic
ATCGGAAGAAGGCATGAGCT+TGG 0.521805 1.2:-70817776 None:intergenic
AAGGAATTGAAAACGTTGAT+GGG 0.523079 1.2:+70818112 MS.gene60690:CDS
CGATGTGATCTCCGGCGATA+GGG 0.523997 1.2:+70817927 MS.gene60690:CDS
TCGGAGACGCTCAGTGGTAG+TGG 0.524000 1.2:+70818063 MS.gene60690:CDS
GTCTGCACAGGGGTGAGACC+AGG 0.526399 1.2:-70822432 None:intergenic
GTCGCCGGCGATGTGATCTC+CGG 0.529993 1.2:+70817919 MS.gene60690:CDS
GAAGAAGGTGGATCGGAAGA+AGG 0.530586 1.2:-70817787 None:intergenic
TTAGGAGATGGAGAAGAAGG+TGG 0.530669 1.2:-70817799 None:intergenic
TAGATACAATGTAGGCATCC+TGG 0.531044 1.2:+70822414 MS.gene60690:intron
TGGCAATGGGAATGTGAATG+GGG 0.531390 1.2:+70818167 MS.gene60690:CDS
CTCCTCTAGCTTCACCGCCA+AGG 0.538630 1.2:-70818579 None:intergenic
AAATTGGCGGTGGTGAAGTG+AGG 0.542267 1.2:-70817823 None:intergenic
GCCGCCACGGTTACTCCGTA+GGG 0.544674 1.2:+70822149 MS.gene60690:CDS
GCGGTTGAGGATGAGGAGGA+GGG 0.553341 1.2:+70818012 MS.gene60690:CDS
CGATGAGATGATGACGCTGG+AGG 0.560524 1.2:+70817969 MS.gene60690:CDS
CATGAGCTTGGAAGAAGCCA+TGG 0.560742 1.2:-70817764 None:intergenic
AGAATCTGCTGCTAGGTCTA+GGG 0.563610 1.2:+70818293 MS.gene60690:CDS
TTCCTGTTGTGGAGCAGCGA+AGG 0.563922 1.2:+70822127 MS.gene60690:CDS
GGCCGCCACGGTTACTCCGT+AGG 0.566727 1.2:+70822148 MS.gene60690:CDS
ATCGTCGAGGAAATTGGCGG+TGG 0.569885 1.2:-70817833 None:intergenic
AGAATAGAGAATCTGCTGCT+AGG 0.572500 1.2:+70818286 MS.gene60690:CDS
CTCCAGCGTCATCATCTCAT+CGG 0.572527 1.2:-70817968 None:intergenic
AGTGGCGACGGCGTCGGCGA+GGG 0.573280 1.2:-70817863 None:intergenic
GTCTGGCGAGAGATCGTCGC+CGG 0.575083 1.2:+70817904 MS.gene60690:CDS
GCACATTTGCAGTCTGCACA+GGG 0.576824 1.2:-70822443 None:intergenic
GACTGCAAATGTGCTAGTAG+AGG 0.577729 1.2:+70822452 MS.gene60690:CDS
GACGGTTCGAGGAGTGGCGA+CGG 0.580962 1.2:-70817875 None:intergenic
CAGACATTGTCGACGGTTCG+AGG 0.581395 1.2:-70817886 None:intergenic
AATTGAAAACGTTGATGGGT+CGG 0.585668 1.2:+70818116 MS.gene60690:CDS
AAGCTGCTCAGCAGAGACAG+AGG 0.593315 1.2:+70818253 MS.gene60690:CDS
ATTGTCGACGGTTCGAGGAG+TGG 0.604191 1.2:-70817881 None:intergenic
TTGATCGTCGAGGAAATTGG+CGG 0.607652 1.2:-70817836 None:intergenic
ACTGCAAATGTGCTAGTAGA+GGG 0.608591 1.2:+70822453 MS.gene60690:CDS
ATCGCCGGAGATCACATCGC+CGG 0.608850 1.2:-70817923 None:intergenic
TTCCGATGAGATGATGACGC+TGG 0.609887 1.2:+70817966 MS.gene60690:CDS
CAATGGGAATGTGAATGGGG+TGG 0.612710 1.2:+70818170 MS.gene60690:CDS
TGGAGCAGCGAAGGCCGCCA+CGG 0.612735 1.2:+70822136 MS.gene60690:CDS
GTAGGGTTCGCTCCTTGCAG+TGG 0.618144 1.2:+70822166 MS.gene60690:CDS
AGTGGAATTGGAGTCCTTGG+CGG 0.619638 1.2:+70818565 MS.gene60690:CDS
GTCCTTGGCGGTGAAGCTAG+AGG 0.622234 1.2:+70818577 MS.gene60690:CDS
CTCTCGCCAGACATTGTCGA+CGG 0.631046 1.2:-70817893 None:intergenic
CCGTTATCGGAGACGCTCAG+TGG 0.634758 1.2:+70818057 MS.gene60690:CDS
ATATTCTTGTGCAGGCTGAG+AGG 0.635094 1.2:+70819506 MS.gene60690:intron
AATGTGCTAGTAGAGGGCAA+AGG 0.636434 1.2:+70822459 MS.gene60690:CDS
AAATATGATCTACCACTGCA+AGG 0.655779 1.2:-70822178 None:intergenic
TGGTGCGGTTGAGGATGAGG+AGG 0.665882 1.2:+70818008 MS.gene60690:CDS
CGAGGGAGATTTGATCGTCG+AGG 0.673387 1.2:-70817846 None:intergenic
ACTGCAAGGAGCGAACCCTA+CGG 0.673999 1.2:-70822164 None:intergenic
ACGACTATATGATGTAGTCA+CGG 0.675264 1.2:+70822491 MS.gene60690:CDS
CTTGGCGGTGAAGCTAGAGG+AGG 0.703301 1.2:+70818580 MS.gene60690:CDS
CGAACCCTACGGAGTAACCG+TGG 0.709737 1.2:-70822153 None:intergenic
TGTGCTAGTAGAGGGCAAAG+GGG 0.714313 1.2:+70822461 MS.gene60690:CDS
CACATTTGCAGTCTGCACAG+GGG 0.730816 1.2:-70822442 None:intergenic
ACCCTACGGAGTAACCGTGG+CGG 0.761547 1.2:-70822150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATATGTATAAATAAC+AGG - chr1.2:70821732-70821751 None:intergenic 10.0%
!! TGAAAGAAAAATTATTTAAA+GGG - chr1.2:70821774-70821793 None:intergenic 10.0%
!! TTAAAATTATTAGGTTATAA+AGG + chr1.2:70821229-70821248 MS.gene60690:intron 10.0%
!!! AAAATGAGTTTAAAATTATT+AGG + chr1.2:70821220-70821239 MS.gene60690:intron 10.0%
!!! AATAATTTTAAACTCATTTT+GGG - chr1.2:70821220-70821239 None:intergenic 10.0%
!!! TAATAATTTTAAACTCATTT+TGG - chr1.2:70821221-70821240 None:intergenic 10.0%
!! ATGTGAAATATAGAATTAAA+TGG + chr1.2:70821491-70821510 MS.gene60690:intron 15.0%
!! CATGATATCAATAATTTATA+GGG + chr1.2:70820118-70820137 MS.gene60690:intron 15.0%
!! CTGAAAGAAAAATTATTTAA+AGG - chr1.2:70821775-70821794 None:intergenic 15.0%
!! TAATTCTGTTAAATAGTTAA+AGG + chr1.2:70821431-70821450 MS.gene60690:intron 15.0%
!! TCATGATATCAATAATTTAT+AGG + chr1.2:70820117-70820136 MS.gene60690:intron 15.0%
!! TGAAAATAATACTATAGAAA+AGG - chr1.2:70819830-70819849 None:intergenic 15.0%
!!! ATAATTTTAAACTCATTTTG+GGG - chr1.2:70821219-70821238 None:intergenic 15.0%
!!! ATTTTGACATTTCATAAATT+AGG + chr1.2:70818932-70818951 MS.gene60690:intron 15.0%
!!! ATTTTTTTAATGAATTTCCT+TGG + chr1.2:70820392-70820411 MS.gene60690:intron 15.0%
!!! TTTTGACATTTCATAAATTA+GGG + chr1.2:70818933-70818952 MS.gene60690:intron 15.0%
!! AAAAACACTTAAAAATGAAC+TGG - chr1.2:70819873-70819892 None:intergenic 20.0%
!! AAAACACTTAAAAATGAACT+GGG - chr1.2:70819872-70819891 None:intergenic 20.0%
!! ACACAAAACTAAAAAAACAA+CGG - chr1.2:70821148-70821167 None:intergenic 20.0%
!! ATTATAGTAAATTTCCGAAA+TGG + chr1.2:70818719-70818738 MS.gene60690:intron 20.0%
!! ATTGTGGGAAATAATAAAAT+GGG + chr1.2:70822228-70822247 MS.gene60690:intron 20.0%
!! CAAATATATAAAAACAAGCA+TGG - chr1.2:70819359-70819378 None:intergenic 20.0%
!! GTTTGAAAAAAAAAAACAGA+AGG - chr1.2:70819189-70819208 None:intergenic 20.0%
!! TACATTGTGTTTATAAATCA+CGG + chr1.2:70820716-70820735 MS.gene60690:intron 20.0%
!! TATCTCTTAAATCTTTGAAT+CGG - chr1.2:70821932-70821951 None:intergenic 20.0%
!! TCAAGATTCATAATTAACAA+TGG - chr1.2:70821271-70821290 None:intergenic 20.0%
!! TCTAAATCTGAAAATTCAAA+GGG - chr1.2:70819444-70819463 None:intergenic 20.0%
!! TGAAAAGGATCTTATATTAA+GGG - chr1.2:70819956-70819975 None:intergenic 20.0%
!! TTGAAAAGGATCTTATATTA+AGG - chr1.2:70819957-70819976 None:intergenic 20.0%
!! TTTAACAGAATTATCAATCT+TGG - chr1.2:70821424-70821443 None:intergenic 20.0%
!!! AAAAATTTTCACAAATACCA+AGG - chr1.2:70820412-70820431 None:intergenic 20.0%
!!! ATGCATATAGAATTTTGAAA+AGG - chr1.2:70819971-70819990 None:intergenic 20.0%
!!! CATGCTTGTTTTTATATATT+TGG + chr1.2:70819357-70819376 MS.gene60690:intron 20.0%
!!! TATATATTTGGAATGTTTCT+TGG + chr1.2:70819369-70819388 MS.gene60690:intron 20.0%
!!! TATTTTATGCTATTGTTTGT+TGG + chr1.2:70819561-70819580 MS.gene60690:intron 20.0%
! AAACACTTAAAAATGAACTG+GGG - chr1.2:70819871-70819890 None:intergenic 25.0%
! AAACAGAAGGATTTCAATAA+TGG - chr1.2:70819176-70819195 None:intergenic 25.0%
! AAACCAACACTTAAAAGAAA+TGG + chr1.2:70820432-70820451 MS.gene60690:intron 25.0%
! AATATTATCTGTTAGATGTC+AGG - chr1.2:70819491-70819510 None:intergenic 25.0%
! AGAGATACAAAAGAATAGTT+TGG + chr1.2:70821945-70821964 MS.gene60690:intron 25.0%
! ATAGATAGCTAACATCTATT+AGG - chr1.2:70822051-70822070 None:intergenic 25.0%
! ATATTATCTGTTAGATGTCA+GGG - chr1.2:70819490-70819509 None:intergenic 25.0%
! ATGTAGTTTAGATACAATGT+AGG + chr1.2:70822406-70822425 MS.gene60690:intron 25.0%
! CAGTTATATTGTTTACCAAA+AGG - chr1.2:70819598-70819617 None:intergenic 25.0%
! CTCTAAATCTGAAAATTCAA+AGG - chr1.2:70819445-70819464 None:intergenic 25.0%
! GATATGGAAAATCAAGAATA+GGG + chr1.2:70821898-70821917 MS.gene60690:intron 25.0%
! GATTGTGGGAAATAATAAAA+TGG + chr1.2:70822227-70822246 MS.gene60690:intron 25.0%
! GTTTCTCAAATTATTATGTC+CGG - chr1.2:70818373-70818392 None:intergenic 25.0%
! TACACATATAGTACATTGTA+GGG - chr1.2:70821823-70821842 None:intergenic 25.0%
! TACATTGTATCTAAACTACA+TGG - chr1.2:70822407-70822426 None:intergenic 25.0%
! TACTATCTATTAGTATGCTT+GGG + chr1.2:70820877-70820896 MS.gene60690:intron 25.0%
! TAGGTTATAAAGGTAGATTT+GGG + chr1.2:70821239-70821258 MS.gene60690:intron 25.0%
! TATAAACACAATGTAATTGC+AGG - chr1.2:70820711-70820730 None:intergenic 25.0%
! TATTAAGGGACAATAAAAAG+TGG - chr1.2:70819942-70819961 None:intergenic 25.0%
! TGATATGGAAAATCAAGAAT+AGG + chr1.2:70821897-70821916 MS.gene60690:intron 25.0%
! TTACTATCTATTAGTATGCT+TGG + chr1.2:70820876-70820895 MS.gene60690:intron 25.0%
! TTAGGTTATAAAGGTAGATT+TGG + chr1.2:70821238-70821257 MS.gene60690:intron 25.0%
! TTCTAAACTATCATCAATAG+AGG - chr1.2:70818852-70818871 None:intergenic 25.0%
!! AATCAAAATAGTTAGTCTCA+AGG + chr1.2:70822272-70822291 MS.gene60690:intron 25.0%
!! AATGTCTTTTGCTCATTTTA+TGG + chr1.2:70822354-70822373 MS.gene60690:intron 25.0%
!! ATCAAAATAGTTAGTCTCAA+GGG + chr1.2:70822273-70822292 MS.gene60690:intron 25.0%
!! CACAAATAGAATGAGATTTT+AGG - chr1.2:70819293-70819312 None:intergenic 25.0%
!! CTCTATTTAAACTTTGTTGT+CGG + chr1.2:70818789-70818808 MS.gene60690:intron 25.0%
!! GCTGATTTATAAAAGAATTG+CGG - chr1.2:70818652-70818671 None:intergenic 25.0%
!! TAATTTTTGACACACTAGTA+TGG + chr1.2:70821664-70821683 MS.gene60690:intron 25.0%
!!! GTTAGAATTTTTTTATACCC+TGG - chr1.2:70820528-70820547 None:intergenic 25.0%
!!! TATTGTTTGTTGGTTTGTTT+TGG + chr1.2:70819571-70819590 MS.gene60690:intron 25.0%
!!! TGGGTTTTTTACTTTTGTTT+TGG + chr1.2:70818518-70818537 MS.gene60690:intron 25.0%
!!! TTTTATTTGTGTGTAGCTTA+TGG + chr1.2:70822095-70822114 MS.gene60690:intron 25.0%
!!! TTTTGGTTTTGTGTGATTTT+AGG + chr1.2:70818535-70818554 MS.gene60690:intron 25.0%
!!! TTTTGTAGTGTGTTTTAACA+TGG - chr1.2:70821627-70821646 None:intergenic 25.0%
AAAACTAATTGCACAGTCAA+AGG - chr1.2:70819231-70819250 None:intergenic 30.0%
AACAGATAATATTCTTGTGC+AGG + chr1.2:70819498-70819517 MS.gene60690:intron 30.0%
AACAGCAAACAAACTTCATA+AGG - chr1.2:70822005-70822024 None:intergenic 30.0%
AAGCTACACACAAATAAAAC+AGG - chr1.2:70822094-70822113 None:intergenic 30.0%
AAGGAATTGAAAACGTTGAT+GGG + chr1.2:70818112-70818131 MS.gene60690:CDS 30.0%
AAGGTTACTTGCATATGATA+TGG + chr1.2:70821882-70821901 MS.gene60690:intron 30.0%
AGGTTATAAAGGTAGATTTG+GGG + chr1.2:70821240-70821259 MS.gene60690:intron 30.0%
ATGTGTTAGGAGAACAAAAA+AGG - chr1.2:70819332-70819351 None:intergenic 30.0%
ATTTCTTATGTACTCCATTC+AGG - chr1.2:70822337-70822356 None:intergenic 30.0%
CCAACAAAAAACTGTCAATT+AGG + chr1.2:70820623-70820642 MS.gene60690:intron 30.0%
GAGGAATTTATGTTTCTCAA+TGG - chr1.2:70820031-70820050 None:intergenic 30.0%
GATATCATCACAGAACATTA+TGG + chr1.2:70821524-70821543 MS.gene60690:intron 30.0%
GGTATTAAGAAAAGTAGTTG+TGG - chr1.2:70820181-70820200 None:intergenic 30.0%
GGTTAATGATAAGAGATAGA+AGG + chr1.2:70822303-70822322 MS.gene60690:intron 30.0%
GTACACATATAGTACATTGT+AGG - chr1.2:70821824-70821843 None:intergenic 30.0%
GTCTGATATGTTATGATACA+CGG + chr1.2:70818344-70818363 MS.gene60690:intron 30.0%
TAAAAGCAGAATTGTGAAGT+TGG + chr1.2:70822380-70822399 MS.gene60690:intron 30.0%
TACTGATGAATATGTTGTCT+TGG + chr1.2:70819689-70819708 MS.gene60690:intron 30.0%
TATTATCTGTTAGATGTCAG+GGG - chr1.2:70819489-70819508 None:intergenic 30.0%
TGTTAGCTATCTATAGTGAT+TGG + chr1.2:70822057-70822076 MS.gene60690:intron 30.0%
! AGTTTTCGTTCTTAAATGTG+AGG + chr1.2:70819742-70819761 MS.gene60690:intron 30.0%
! ATTTAAACTTTGTTGTCGGT+AGG + chr1.2:70818793-70818812 MS.gene60690:intron 30.0%
! TAGGATTTAAAGTAGGGTTA+GGG + chr1.2:70818812-70818831 MS.gene60690:intron 30.0%
! TTTGGCAGTTTTCGATTTAA+GGG + chr1.2:70818906-70818925 MS.gene60690:intron 30.0%
! TTTTACTTCCAATATGCCAT+TGG + chr1.2:70819781-70819800 MS.gene60690:intron 30.0%
!! AGGATTTCAATAATGGACAT+TGG - chr1.2:70819169-70819188 None:intergenic 30.0%
!! GCACATGTTTTATTAGTTGA+AGG + chr1.2:70821863-70821882 MS.gene60690:intron 30.0%
!! TCTCCATTTCTTTTAAGTGT+TGG - chr1.2:70820438-70820457 None:intergenic 30.0%
!!! CCTAATTGACAGTTTTTTGT+TGG - chr1.2:70820626-70820645 None:intergenic 30.0%
!!! TGCTTTTGTTTTTGTGATGT+GGG + chr1.2:70818499-70818518 MS.gene60690:intron 30.0%
!!! TGTGCAATTAGTTTTTACGT+GGG + chr1.2:70819236-70819255 MS.gene60690:intron 30.0%
!!! TTTCTTTTTTTAGTAGCCAG+CGG + chr1.2:70821108-70821127 MS.gene60690:intron 30.0%
!!! TTTTAGGACTGAATTCTATG+AGG - chr1.2:70819277-70819296 None:intergenic 30.0%
AAATATGATCTACCACTGCA+AGG - chr1.2:70822181-70822200 None:intergenic 35.0%
AACCATTCGACTCTGATTAA+GGG + chr1.2:70819091-70819110 MS.gene60690:intron 35.0%
AAGAAATCGCAGTTGTTTAG+TGG - chr1.2:70821094-70821113 None:intergenic 35.0%
AAGATGTGAACTGAAGATTG+TGG + chr1.2:70822212-70822231 MS.gene60690:intron 35.0%
AATCTAGTGCAAGAGATAAC+CGG - chr1.2:70820777-70820796 None:intergenic 35.0%
ACCATCATCAATTCCAAAGA+CGG - chr1.2:70818750-70818769 None:intergenic 35.0%
ACGACTATATGATGTAGTCA+CGG + chr1.2:70822491-70822510 MS.gene60690:CDS 35.0%
AGAACAAAAAAGGAACTTCG+TGG - chr1.2:70819322-70819341 None:intergenic 35.0%
AGAAGAAACCAATGGCATAT+TGG - chr1.2:70819792-70819811 None:intergenic 35.0%
AGATGTGAACTGAAGATTGT+GGG + chr1.2:70822213-70822232 MS.gene60690:intron 35.0%
AGGGACAATAAAAAGTGGAA+AGG - chr1.2:70819937-70819956 None:intergenic 35.0%
ATAGCTAACATCTATTAGGC+TGG - chr1.2:70822047-70822066 None:intergenic 35.0%
ATGCAGCAACATATGTATAG+AGG + chr1.2:70820554-70820573 MS.gene60690:intron 35.0%
ATGCAGCAAGACAAAAGTTA+TGG + chr1.2:70820947-70820966 MS.gene60690:intron 35.0%
ATTAGCAAATTGCTCACGTA+GGG - chr1.2:70821369-70821388 None:intergenic 35.0%
ATTATCTGTTAGATGTCAGG+GGG - chr1.2:70819488-70819507 None:intergenic 35.0%
CAAGGAATTGAAAACGTTGA+TGG + chr1.2:70818111-70818130 MS.gene60690:CDS 35.0%
CTTCAGCTATGGTATCAAAT+GGG - chr1.2:70819653-70819672 None:intergenic 35.0%
CTTGATGTAGAAGAAACCAA+TGG - chr1.2:70819800-70819819 None:intergenic 35.0%
GAGAGACTACAGAAAACTAT+AGG + chr1.2:70821458-70821477 MS.gene60690:intron 35.0%
GGACAATAAAAAGTGGAAAG+GGG - chr1.2:70819935-70819954 None:intergenic 35.0%
GGGACAATAAAAAGTGGAAA+GGG - chr1.2:70819936-70819955 None:intergenic 35.0%
GTCTTATAATTAGAGGCAGA+GGG - chr1.2:70819913-70819932 None:intergenic 35.0%
GTTGTTTAGTGGAAGCAAAT+AGG - chr1.2:70821083-70821102 None:intergenic 35.0%
TACAAGGCAAACATTCTTTG+TGG + chr1.2:70819053-70819072 MS.gene60690:intron 35.0%
TACGTGGGTAATTTCCATAA+CGG + chr1.2:70819251-70819270 MS.gene60690:intron 35.0%
TATTAGTATGCTTGGGAAGA+GGG + chr1.2:70820884-70820903 MS.gene60690:intron 35.0%
TCAGGATATGAGTTACATCT+TGG - chr1.2:70820592-70820611 None:intergenic 35.0%
TCTTCAGCTATGGTATCAAA+TGG - chr1.2:70819654-70819673 None:intergenic 35.0%
TGCAGCAACATATGTATAGA+GGG + chr1.2:70820555-70820574 MS.gene60690:intron 35.0%
TGCAGCAAGACAAAAGTTAT+GGG + chr1.2:70820948-70820967 MS.gene60690:intron 35.0%
TTAGGCTTATCAAGTGGAAT+TGG + chr1.2:70818553-70818572 MS.gene60690:intron 35.0%
TTATCCAATTGCTCCATAAC+AGG - chr1.2:70818234-70818253 None:intergenic 35.0%
TTGTTGGACTGAAATCATTC+AGG - chr1.2:70820610-70820629 None:intergenic 35.0%
! AATTGAAAACGTTGATGGGT+CGG + chr1.2:70818116-70818135 MS.gene60690:CDS 35.0%
! CAAAGACGGTTTTACCATTT+CGG - chr1.2:70818736-70818755 None:intergenic 35.0%
! CTTTTGTCTTGCTGCATAAA+TGG - chr1.2:70820944-70820963 None:intergenic 35.0%
! GAAAGGGGTCTTATAATTAG+AGG - chr1.2:70819920-70819939 None:intergenic 35.0%
! GTAGGATTTAAAGTAGGGTT+AGG + chr1.2:70818811-70818830 MS.gene60690:intron 35.0%
! GTGATTTTAGGCTTATCAAG+TGG + chr1.2:70818547-70818566 MS.gene60690:intron 35.0%
! GTTTGGCAGTTTTCGATTTA+AGG + chr1.2:70818905-70818924 MS.gene60690:intron 35.0%
! TGATGATTTTTCACGACAGA+GGG + chr1.2:70818874-70818893 MS.gene60690:intron 35.0%
! TGTCGGTAGGATTTAAAGTA+GGG + chr1.2:70818806-70818825 MS.gene60690:intron 35.0%
! TTCTCAATGGTGCTTTAAAC+AGG - chr1.2:70820018-70820037 None:intergenic 35.0%
! TTGGTGGACAGAAATCATTA+AGG + chr1.2:70820986-70821005 MS.gene60690:intron 35.0%
! TTGTCGGTAGGATTTAAAGT+AGG + chr1.2:70818805-70818824 MS.gene60690:intron 35.0%
!! AGCAATTTGCTAATGTGCTA+TGG + chr1.2:70821375-70821394 MS.gene60690:intron 35.0%
!! GCAATTTGCTAATGTGCTAT+GGG + chr1.2:70821376-70821395 MS.gene60690:intron 35.0%
!! GGAAAATGACAAGTTGATGA+AGG + chr1.2:70818601-70818620 MS.gene60690:CDS 35.0%
!! TGACAAGTTGATGAAGGAAA+AGG + chr1.2:70818607-70818626 MS.gene60690:CDS 35.0%
!!! CTCATTTTGGGGTTTAAGAT+TGG - chr1.2:70821208-70821227 None:intergenic 35.0%
!!! CTGTGCAATTAGTTTTTACG+TGG + chr1.2:70819235-70819254 MS.gene60690:intron 35.0%
!!! GTGCTTTTGTTTTTGTGATG+TGG + chr1.2:70818498-70818517 MS.gene60690:intron 35.0%
!!! TTGGTTTGTTTTGGACCTTT+TGG + chr1.2:70819580-70819599 MS.gene60690:intron 35.0%
AAACTGTCAATTAGGTGCAC+TGG + chr1.2:70820631-70820650 MS.gene60690:intron 40.0%
AATGGCAATGGGAATGTGAA+TGG + chr1.2:70818165-70818184 MS.gene60690:CDS 40.0%
ACTGCAAATGTGCTAGTAGA+GGG + chr1.2:70822453-70822472 MS.gene60690:CDS 40.0%
AGAAGGAATCAGTACCTGAA+TGG + chr1.2:70822320-70822339 MS.gene60690:intron 40.0%
AGAATAGAGAATCTGCTGCT+AGG + chr1.2:70818286-70818305 MS.gene60690:CDS 40.0%
ATGGATGCCTGAATGAACTT+TGG - chr1.2:70820925-70820944 None:intergenic 40.0%
ATGGCAATGGGAATGTGAAT+GGG + chr1.2:70818166-70818185 MS.gene60690:CDS 40.0%
ATGTTATGATACACGGACAC+CGG + chr1.2:70818351-70818370 MS.gene60690:intron 40.0%
CAAACCACCAAAGTTCATTC+AGG + chr1.2:70820915-70820934 MS.gene60690:intron 40.0%
CAAATGTGTCAGTGTTGTGT+TGG + chr1.2:70818412-70818431 MS.gene60690:intron 40.0%
CAGTGGTAGATCATATTTGC+TGG + chr1.2:70822183-70822202 MS.gene60690:intron 40.0%
CATTAGCAAATTGCTCACGT+AGG - chr1.2:70821370-70821389 None:intergenic 40.0%
CGAAATGGTAAAACCGTCTT+TGG + chr1.2:70818734-70818753 MS.gene60690:intron 40.0%
CTATTAGTATGCTTGGGAAG+AGG + chr1.2:70820883-70820902 MS.gene60690:intron 40.0%
CTGAAAATTCAAAGGGTTGC+AGG - chr1.2:70819437-70819456 None:intergenic 40.0%
CTTCACTAGTAGGCAATGAA+AGG - chr1.2:70820850-70820869 None:intergenic 40.0%
GAACCATTCGACTCTGATTA+AGG + chr1.2:70819090-70819109 MS.gene60690:intron 40.0%
GAAGATGACGATTCCGTTAT+CGG + chr1.2:70818044-70818063 MS.gene60690:CDS 40.0%
GACACTATAGCGTCACTATT+GGG + chr1.2:70821168-70821187 MS.gene60690:intron 40.0%
GAGATAACCGGTTATCATCT+CGG - chr1.2:70820765-70820784 None:intergenic 40.0%
GATTTGATCGTCGAGGAAAT+TGG - chr1.2:70817842-70817861 None:intergenic 40.0%
GCTATGGTATCAAATGGGAA+AGG - chr1.2:70819648-70819667 None:intergenic 40.0%
GGAAAAAGTGATTCCTGTTG+TGG + chr1.2:70822116-70822135 MS.gene60690:CDS 40.0%
GTAATACCCTCTTCACTAGT+AGG - chr1.2:70820860-70820879 None:intergenic 40.0%
GTTGGACTAAAAACACGTGT+CGG + chr1.2:70818430-70818449 MS.gene60690:intron 40.0%
TAAAAACACGTGTCGGATAC+AGG + chr1.2:70818437-70818456 MS.gene60690:intron 40.0%
TAGATACAATGTAGGCATCC+TGG + chr1.2:70822414-70822433 MS.gene60690:intron 40.0%
TAGCAAGCAATCTTCAGCTA+TGG - chr1.2:70819664-70819683 None:intergenic 40.0%
TCATTGCCTACTAGTGAAGA+GGG + chr1.2:70820851-70820870 MS.gene60690:intron 40.0%
TGAATTCTATGAGGCCGTTA+TGG - chr1.2:70819268-70819287 None:intergenic 40.0%
TGACACTATAGCGTCACTAT+TGG + chr1.2:70821167-70821186 MS.gene60690:intron 40.0%
TTAATACCCTTGAACTTCGC+TGG + chr1.2:70820193-70820212 MS.gene60690:intron 40.0%
TTCATTGCCTACTAGTGAAG+AGG + chr1.2:70820850-70820869 MS.gene60690:intron 40.0%
TTGCTGTGGTTAATGCTACA+AGG + chr1.2:70819037-70819056 MS.gene60690:intron 40.0%
! AATCACAAGTTGACGTGTAG+TGG + chr1.2:70820496-70820515 MS.gene60690:intron 40.0%
! AATCACGGAAAAACCGACTT+TGG + chr1.2:70820731-70820750 MS.gene60690:intron 40.0%
! CAAAATCTTTTCCCACTAGG+TGG - chr1.2:70821580-70821599 None:intergenic 40.0%
! CACCAAAATCTTTTCCCACT+AGG - chr1.2:70821583-70821602 None:intergenic 40.0%
! CACCTAGTGGGAAAAGATTT+TGG + chr1.2:70821578-70821597 MS.gene60690:intron 40.0%
! CTAGTGGGAAAAGATTTTGG+TGG + chr1.2:70821581-70821600 MS.gene60690:intron 40.0%
! GAGAGTCTTATGATAAGGGA+CGG + chr1.2:70820215-70820234 MS.gene60690:intron 40.0%
! GAGGATTTTCTTGTGAAAGC+TGG + chr1.2:70817988-70818007 MS.gene60690:CDS 40.0%
! GCTGGAGAGTCTTATGATAA+GGG + chr1.2:70820211-70820230 MS.gene60690:intron 40.0%
! GGTCTTATAATTAGAGGCAG+AGG - chr1.2:70819914-70819933 None:intergenic 40.0%
! GTGATGATTTTTCACGACAG+AGG + chr1.2:70818873-70818892 MS.gene60690:intron 40.0%
! GTTGTGCTTGTTAACAGAAG+TGG + chr1.2:70819139-70819158 MS.gene60690:intron 40.0%
! TGGTAGATCATATTTGCTGG+TGG + chr1.2:70822186-70822205 MS.gene60690:intron 40.0%
! TGGTCAGGATTTTAAACTGC+AGG + chr1.2:70820651-70820670 MS.gene60690:intron 40.0%
! TTTTCTTGTGAAAGCTGGTG+CGG + chr1.2:70817993-70818012 MS.gene60690:CDS 40.0%
!! AATGTTTCTTGGAGCACTGT+TGG + chr1.2:70819380-70819399 MS.gene60690:intron 40.0%
!! ACCGTCTTTGGAATTGATGA+TGG + chr1.2:70818746-70818765 MS.gene60690:intron 40.0%
!! TCGTTGGATTCGAGTTTTCA+AGG + chr1.2:70818093-70818112 MS.gene60690:CDS 40.0%
!! TTGGAATTGATGATGGTCTG+TGG + chr1.2:70818753-70818772 MS.gene60690:intron 40.0%
!!! GTGGTATTGGCTCTTTTACA+TGG - chr1.2:70821561-70821580 None:intergenic 40.0%
!!! TGGTAGTGGTATGTTTTCGT+TGG + chr1.2:70818077-70818096 MS.gene60690:CDS 40.0%
AAAGAGCCAATACCACCTAG+TGG + chr1.2:70821565-70821584 MS.gene60690:intron 45.0%
AAGAGCCAATACCACCTAGT+GGG + chr1.2:70821566-70821585 MS.gene60690:intron 45.0%
AATGGGAATGGGAATGGCAA+TGG + chr1.2:70818153-70818172 MS.gene60690:CDS 45.0%
AATGGGGTGGAAATGGTTGA+AGG + chr1.2:70818183-70818202 MS.gene60690:CDS 45.0%
AATGTGCTAGTAGAGGGCAA+AGG + chr1.2:70822459-70822478 MS.gene60690:CDS 45.0%
ACTTGTGCAGTAGAGACATC+TGG - chr1.2:70820815-70820834 None:intergenic 45.0%
AGAATCTGCTGCTAGGTCTA+GGG + chr1.2:70818293-70818312 MS.gene60690:CDS 45.0%
AGATGGAGAAGAAGGTGGAT+CGG - chr1.2:70817797-70817816 None:intergenic 45.0%
AGCAAAAAGCAAGCAGCTGA+TGG - chr1.2:70819022-70819041 None:intergenic 45.0%
ATAACCGGTTATCATCTCGG+TGG - chr1.2:70820762-70820781 None:intergenic 45.0%
ATAGGGTTTGGGAATGGGAA+TGG + chr1.2:70818141-70818160 MS.gene60690:CDS 45.0%
ATATTCTTGTGCAGGCTGAG+AGG + chr1.2:70819506-70819525 MS.gene60690:intron 45.0%
ATGGGAATGGGAATGGCAAT+GGG + chr1.2:70818154-70818173 MS.gene60690:CDS 45.0%
ATGTGCTAGTAGAGGGCAAA+GGG + chr1.2:70822460-70822479 MS.gene60690:CDS 45.0%
CAAGCAGCTGATGGAAAATG+TGG - chr1.2:70819013-70819032 None:intergenic 45.0%
CAAGCATGGTAGCATGTGTT+AGG - chr1.2:70819345-70819364 None:intergenic 45.0%
GAAAAAGGAGAGGTTCAAGC+AGG + chr1.2:70819528-70819547 MS.gene60690:CDS 45.0%
GAATGTGAATGGGGTGGAAA+TGG + chr1.2:70818176-70818195 MS.gene60690:CDS 45.0%
GACAGAGGGACAAAGTTGTT+TGG + chr1.2:70818888-70818907 MS.gene60690:intron 45.0%
GACTGCAAATGTGCTAGTAG+AGG + chr1.2:70822452-70822471 MS.gene60690:CDS 45.0%
GATGCCTGAATGAACTTTGG+TGG - chr1.2:70820922-70820941 None:intergenic 45.0%
GGTTTAGGAGATGGAGAAGA+AGG - chr1.2:70817805-70817824 None:intergenic 45.0%
GTCCCTTAATCAGAGTCGAA+TGG - chr1.2:70819096-70819115 None:intergenic 45.0%
GTGAAGTGAGGTTTAGGAGA+TGG - chr1.2:70817814-70817833 None:intergenic 45.0%
TAGGGTTTGGGAATGGGAAT+GGG + chr1.2:70818142-70818161 MS.gene60690:CDS 45.0%
TCAAGTGGAATTGGAGTCCT+TGG + chr1.2:70818562-70818581 MS.gene60690:CDS 45.0%
TGGCAATGGGAATGTGAATG+GGG + chr1.2:70818167-70818186 MS.gene60690:CDS 45.0%
TTAGGAGATGGAGAAGAAGG+TGG - chr1.2:70817802-70817821 None:intergenic 45.0%
TTCTTTACACTCCCTATCGC+CGG - chr1.2:70817941-70817960 None:intergenic 45.0%
TTGATCGTCGAGGAAATTGG+CGG - chr1.2:70817839-70817858 None:intergenic 45.0%
TTGCTAATGTGCTATGGGAC+TGG + chr1.2:70821381-70821400 MS.gene60690:intron 45.0%
TTTGGGAATGGGAATGGGAA+TGG + chr1.2:70818147-70818166 MS.gene60690:CDS 45.0%
! CGCTGGAGAGTCTTATGATA+AGG + chr1.2:70820210-70820229 MS.gene60690:intron 45.0%
! CTTTTCCCACTAGGTGGTAT+TGG - chr1.2:70821574-70821593 None:intergenic 45.0%
! GTTAGTCTCAAGGGTAACTG+TGG + chr1.2:70822282-70822301 MS.gene60690:intron 45.0%
! TCACTATTGGGTTGCAAGAG+TGG + chr1.2:70821180-70821199 MS.gene60690:intron 45.0%
!!! CTTTTTTTAGTAGCCAGCGG+TGG + chr1.2:70821111-70821130 MS.gene60690:intron 45.0%
!!! GCTGCTCGTTAGTTTTTTGG+TGG + chr1.2:70820970-70820989 MS.gene60690:intron 45.0%
!!! TGGGCTGCTCGTTAGTTTTT+TGG + chr1.2:70820967-70820986 MS.gene60690:intron 45.0%
AAATTGGCGGTGGTGAAGTG+AGG - chr1.2:70817826-70817845 None:intergenic 50.0%
ACGGCCTGTTATGGAGCAAT+TGG + chr1.2:70818227-70818246 MS.gene60690:CDS 50.0%
AGACTCTCCAGCGAAGTTCA+AGG - chr1.2:70820203-70820222 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1.2:70820048-70820067 None:intergenic 50.0%
AGCACATTTGCAGTCTGCAC+AGG - chr1.2:70822447-70822466 None:intergenic 50.0%
AGGCTGAGAGGAAAAAGGAG+AGG + chr1.2:70819518-70819537 MS.gene60690:intron 50.0%
AGTGGAATTGGAGTCCTTGG+CGG + chr1.2:70818565-70818584 MS.gene60690:CDS 50.0%
ATGGGTCGGTGATAGGGTTT+GGG + chr1.2:70818130-70818149 MS.gene60690:CDS 50.0%
CAATGGGAATGTGAATGGGG+TGG + chr1.2:70818170-70818189 MS.gene60690:CDS 50.0%
CACACCACCGAGATGATAAC+CGG + chr1.2:70820755-70820774 MS.gene60690:intron 50.0%
CACATTTGCAGTCTGCACAG+GGG - chr1.2:70822445-70822464 None:intergenic 50.0%
CGGTGATAGGGTTTGGGAAT+GGG + chr1.2:70818136-70818155 MS.gene60690:CDS 50.0%
CTAATGTGCTATGGGACTGG+TGG + chr1.2:70821384-70821403 MS.gene60690:intron 50.0%
CTCCAGCGTCATCATCTCAT+CGG - chr1.2:70817971-70817990 None:intergenic 50.0%
GAAGAAGGTGGATCGGAAGA+AGG - chr1.2:70817790-70817809 None:intergenic 50.0%
GACTCTCCAGCGAAGTTCAA+GGG - chr1.2:70820202-70820221 None:intergenic 50.0%
GAGAATCTGCTGCTAGGTCT+AGG + chr1.2:70818292-70818311 MS.gene60690:CDS 50.0%
GCACATTTGCAGTCTGCACA+GGG - chr1.2:70822446-70822465 None:intergenic 50.0%
GGGTGGAAATGGTTGAAGGT+GGG + chr1.2:70818187-70818206 MS.gene60690:CDS 50.0%
GGTGGAAATGGTTGAAGGTG+GGG + chr1.2:70818188-70818207 MS.gene60690:CDS 50.0%
GTGGAAATGGTTGAAGGTGG+GGG + chr1.2:70818189-70818208 MS.gene60690:CDS 50.0%
TCGGTGATAGGGTTTGGGAA+TGG + chr1.2:70818135-70818154 MS.gene60690:CDS 50.0%
TGGAAATGGTTGAAGGTGGG+GGG + chr1.2:70818190-70818209 MS.gene60690:CDS 50.0%
TGTGCAGGCTGAGAGGAAAA+AGG + chr1.2:70819513-70819532 MS.gene60690:intron 50.0%
TGTGCTAGTAGAGGGCAAAG+GGG + chr1.2:70822461-70822480 MS.gene60690:CDS 50.0%
! AACGTTGATGGGTCGGTGAT+AGG + chr1.2:70818123-70818142 MS.gene60690:CDS 50.0%
! ACGTTGATGGGTCGGTGATA+GGG + chr1.2:70818124-70818143 MS.gene60690:CDS 50.0%
! ATCACATGATGGGGTCCACA+GGG + chr1.2:70820678-70820697 MS.gene60690:intron 50.0%
! ATCGGAAGAAGGCATGAGCT+TGG - chr1.2:70817779-70817798 None:intergenic 50.0%
! GTCAATTAGGTGCACTGGTC+AGG + chr1.2:70820636-70820655 MS.gene60690:intron 50.0%
! TTCCGATGAGATGATGACGC+TGG + chr1.2:70817966-70817985 MS.gene60690:CDS 50.0%
!!! CAGCTGCTTGCTTTTTGCTG+TGG + chr1.2:70819023-70819042 MS.gene60690:intron 50.0%
AAATGGTTGAAGGTGGGGGG+AGG + chr1.2:70818193-70818212 MS.gene60690:CDS 55.0%
AAGCTGCTCAGCAGAGACAG+AGG + chr1.2:70818253-70818272 MS.gene60690:CDS 55.0%
AATGGTTGAAGGTGGGGGGA+GGG + chr1.2:70818194-70818213 MS.gene60690:CDS 55.0%
ACGTGTAGTGGCAGCAACCA+GGG + chr1.2:70820508-70820527 MS.gene60690:intron 55.0%
ACTGCAAGGAGCGAACCCTA+CGG - chr1.2:70822167-70822186 None:intergenic 55.0%
ATCGTCGAGGAAATTGGCGG+TGG - chr1.2:70817836-70817855 None:intergenic 55.0%
ATTGTCGACGGTTCGAGGAG+TGG - chr1.2:70817884-70817903 None:intergenic 55.0%
CAGACATTGTCGACGGTTCG+AGG - chr1.2:70817889-70817908 None:intergenic 55.0%
CCACTGAGCGTCTCCGATAA+CGG - chr1.2:70818060-70818079 None:intergenic 55.0%
CGAGGGAGATTTGATCGTCG+AGG - chr1.2:70817849-70817868 None:intergenic 55.0%
CGATGTGATCTCCGGCGATA+GGG + chr1.2:70817927-70817946 MS.gene60690:CDS 55.0%
CGGTTATCATCTCGGTGGTG+TGG - chr1.2:70820757-70820776 None:intergenic 55.0%
CTCGAACCGTCGACAATGTC+TGG + chr1.2:70817887-70817906 MS.gene60690:CDS 55.0%
CTCTCGCCAGACATTGTCGA+CGG - chr1.2:70817896-70817915 None:intergenic 55.0%
GAAGAGAGGACGGCCTGTTA+TGG + chr1.2:70818218-70818237 MS.gene60690:CDS 55.0%
GATGGGTCGGTGATAGGGTT+TGG + chr1.2:70818129-70818148 MS.gene60690:CDS 55.0%
GCGGTGGTGAAGTGAGGTTT+AGG - chr1.2:70817820-70817839 None:intergenic 55.0%
GGGGTGGAAATGGTTGAAGG+TGG + chr1.2:70818186-70818205 MS.gene60690:CDS 55.0%
GTGGACCCCATCATGTGATG+CGG - chr1.2:70820677-70820696 None:intergenic 55.0%
TAGGTCTAGGGAACGCAAGC+AGG + chr1.2:70818305-70818324 MS.gene60690:CDS 55.0%
TGCAGGCCGCATCACATGAT+GGG + chr1.2:70820668-70820687 MS.gene60690:intron 55.0%
TGTGAAAGCTGGTGCGGTTG+AGG + chr1.2:70817999-70818018 MS.gene60690:CDS 55.0%
TTCCTGTTGTGGAGCAGCGA+AGG + chr1.2:70822127-70822146 MS.gene60690:CDS 55.0%
! CATCACATGATGGGGTCCAC+AGG + chr1.2:70820677-70820696 MS.gene60690:intron 55.0%
! CGATGAGATGATGACGCTGG+AGG + chr1.2:70817969-70817988 MS.gene60690:CDS 55.0%
! TCACATGATGGGGTCCACAG+GGG + chr1.2:70820679-70820698 MS.gene60690:intron 55.0%
ACCCTACGGAGTAACCGTGG+CGG - chr1.2:70822153-70822172 None:intergenic 60.0%
AGCTGGTGCGGTTGAGGATG+AGG + chr1.2:70818005-70818024 MS.gene60690:CDS 60.0%
ATCGCCGGAGATCACATCGC+CGG - chr1.2:70817926-70817945 None:intergenic 60.0%
ATGGTTGAAGGTGGGGGGAG+GGG + chr1.2:70818195-70818214 MS.gene60690:CDS 60.0%
ATTGCAGGCAGATGCCCCTG+TGG - chr1.2:70820696-70820715 None:intergenic 60.0%
CCGTTATCGGAGACGCTCAG+TGG + chr1.2:70818057-70818076 MS.gene60690:CDS 60.0%
CGAACCCTACGGAGTAACCG+TGG - chr1.2:70822156-70822175 None:intergenic 60.0%
CTCGGTGGTGTGGCCAAAGT+CGG - chr1.2:70820747-70820766 None:intergenic 60.0%
CTGCAGGCCGCATCACATGA+TGG + chr1.2:70820667-70820686 MS.gene60690:intron 60.0%
CTTGGCGGTGAAGCTAGAGG+AGG + chr1.2:70818580-70818599 MS.gene60690:CDS 60.0%
GACGTGTAGTGGCAGCAACC+AGG + chr1.2:70820507-70820526 MS.gene60690:intron 60.0%
GCAGGCCGCATCACATGATG+GGG + chr1.2:70820669-70820688 MS.gene60690:intron 60.0%
GCGATGTGATCTCCGGCGAT+AGG + chr1.2:70817926-70817945 MS.gene60690:CDS 60.0%
GCGGTTGAGGATGAGGAGGA+GGG + chr1.2:70818012-70818031 MS.gene60690:CDS 60.0%
GTAGGGTTCGCTCCTTGCAG+TGG + chr1.2:70822166-70822185 MS.gene60690:CDS 60.0%
GTCCTTGGCGGTGAAGCTAG+AGG + chr1.2:70818577-70818596 MS.gene60690:CDS 60.0%
TCGGAGACGCTCAGTGGTAG+TGG + chr1.2:70818063-70818082 MS.gene60690:CDS 60.0%
TGAGGATGAGGAGGAGGGTG+AGG + chr1.2:70818017-70818036 MS.gene60690:CDS 60.0%
TGCGGTTGAGGATGAGGAGG+AGG + chr1.2:70818011-70818030 MS.gene60690:CDS 60.0%
TGGTGCGGTTGAGGATGAGG+AGG + chr1.2:70818008-70818027 MS.gene60690:CDS 60.0%
! CTCCTCTAGCTTCACCGCCA+AGG - chr1.2:70818582-70818601 None:intergenic 60.0%
AGTAGCCAGCGGTGGCGCAA+CGG + chr1.2:70821119-70821138 MS.gene60690:intron 65.0%
GACGGTTCGAGGAGTGGCGA+CGG - chr1.2:70817878-70817897 None:intergenic 65.0%
GCCGCCACGGTTACTCCGTA+GGG + chr1.2:70822149-70822168 MS.gene60690:CDS 65.0%
GGCCTTCGCTGCTCCACAAC+AGG - chr1.2:70822132-70822151 None:intergenic 65.0%
GTCGCCGGCGATGTGATCTC+CGG + chr1.2:70817919-70817938 MS.gene60690:CDS 65.0%
GTCTGCACAGGGGTGAGACC+AGG - chr1.2:70822435-70822454 None:intergenic 65.0%
GTCTGGCGAGAGATCGTCGC+CGG + chr1.2:70817904-70817923 MS.gene60690:CDS 65.0%
TGGTTGAAGGTGGGGGGAGG+GGG + chr1.2:70818196-70818215 MS.gene60690:CDS 65.0%
GGCCGCCACGGTTACTCCGT+AGG + chr1.2:70822148-70822167 MS.gene60690:CDS 70.0%
GGGGGAGGGGGAAGAGAGGA+CGG + chr1.2:70818208-70818227 MS.gene60690:CDS 70.0%
TCGAGGAGTGGCGACGGCGT+CGG - chr1.2:70817872-70817891 None:intergenic 70.0%
TGGAGCAGCGAAGGCCGCCA+CGG + chr1.2:70822136-70822155 MS.gene60690:CDS 70.0%
GGTGGGGGGAGGGGGAAGAG+AGG + chr1.2:70818204-70818223 MS.gene60690:CDS 75.0%
!! AGTGGCGACGGCGTCGGCGA+GGG - chr1.2:70817866-70817885 None:intergenic 75.0%
! GGCAGCCGTTGCGCCACCGC+TGG - chr1.2:70821127-70821146 None:intergenic 80.0%
!!! GAGTGGCGACGGCGTCGGCG+AGG - chr1.2:70817867-70817886 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 70817766 70822518 70817766 ID=MS.gene60690
chr1.2 mRNA 70817766 70822518 70817766 ID=MS.gene60690.t1;Parent=MS.gene60690
chr1.2 exon 70817766 70818326 70817766 ID=MS.gene60690.t1.exon1;Parent=MS.gene60690.t1
chr1.2 CDS 70817766 70818326 70817766 ID=cds.MS.gene60690.t1;Parent=MS.gene60690.t1
chr1.2 exon 70818557 70818628 70818557 ID=MS.gene60690.t1.exon2;Parent=MS.gene60690.t1
chr1.2 CDS 70818557 70818628 70818557 ID=cds.MS.gene60690.t1;Parent=MS.gene60690.t1
chr1.2 exon 70819520 70819549 70819520 ID=MS.gene60690.t1.exon3;Parent=MS.gene60690.t1
chr1.2 CDS 70819520 70819549 70819520 ID=cds.MS.gene60690.t1;Parent=MS.gene60690.t1
chr1.2 exon 70822111 70822187 70822111 ID=MS.gene60690.t1.exon4;Parent=MS.gene60690.t1
chr1.2 CDS 70822111 70822187 70822111 ID=cds.MS.gene60690.t1;Parent=MS.gene60690.t1
chr1.2 exon 70822428 70822518 70822428 ID=MS.gene60690.t1.exon5;Parent=MS.gene60690.t1
chr1.2 CDS 70822428 70822518 70822428 ID=cds.MS.gene60690.t1;Parent=MS.gene60690.t1
Gene Sequence

>MS.gene60690

ATGGCTTCTTCCAAGCTCATGCCTTCTTCCGATCCACCTTCTTCTCCATCTCCTAAACCTCACTTCACCACCGCCAATTTCCTCGACGATCAAATCTCCCTCGCCGACGCCGTCGCCACTCCTCGAACCGTCGACAATGTCTGGCGAGAGATCGTCGCCGGCGATGTGATCTCCGGCGATAGGGAGTGTAAAGAAGAGATTTCCGATGAGATGATGACGCTGGAGGATTTTCTTGTGAAAGCTGGTGCGGTTGAGGATGAGGAGGAGGGTGAGGATGTGAAGATGACGATTCCGTTATCGGAGACGCTCAGTGGTAGTGGTATGTTTTCGTTGGATTCGAGTTTTCAAGGAATTGAAAACGTTGATGGGTCGGTGATAGGGTTTGGGAATGGGAATGGGAATGGCAATGGGAATGTGAATGGGGTGGAAATGGTTGAAGGTGGGGGGAGGGGGAAGAGAGGACGGCCTGTTATGGAGCAATTGGATAAAGCTGCTCAGCAGAGACAGAGGAGAATGATTAAGAATAGAGAATCTGCTGCTAGGTCTAGGGAACGCAAGCAGGTATTGATTGTTTTTGTGTCTGATATGTTATGATACACGGACACCGGACATAATAATTTGAGAAACTGAATTATTTGATTGTAATCAAATGTGTCAGTGTTGTGTTGGACTAAAAACACGTGTCGGATACAGGACTCGTCTTTGCTCAGATGTTTTAGTGCTACATGATATGTGCTTTTGTTTTTGTGATGTGGGTTTTTTACTTTTGTTTTGGTTTTGTGTGATTTTAGGCTTATCAAGTGGAATTGGAGTCCTTGGCGGTGAAGCTAGAGGAGGAAAATGACAAGTTGATGAAGGAAAAGGTGATGTATACTTGCATTTTCCGCAATTCTTTTATAAATCAGCAATGAATTGCGATTTTGATCATCAAAATTGTAGAAATTGTGCTATTTATTATAGTAAATTTCCGAAATGGTAAAACCGTCTTTGGAATTGATGATGGTCTGTGGATTTAATGAATATCTCTATTTAAACTTTGTTGTCGGTAGGATTTAAAGTAGGGTTAGGGTGCAATTAAGAACTCCTCTATTGATGATAGTTTAGAAAGTGATGATTTTTCACGACAGAGGGACAAAGTTGTTTGGCAGTTTTCGATTTAAGGGATAATTTTGACATTTCATAAATTAGGGACTATATTGTCTGATGCTTACTATTTTGAAGACTAAAACGATGATTAATTCATTCCACATTTTCCATCAGCTGCTTGCTTTTTGCTGTGGTTAATGCTACAAGGCAAACATTCTTTGTGGTCTATGCTGAACTTGAACCATTCGACTCTGATTAAGGGACTAAATTATAATTAGTGCACTCAAGTTGTGCTTGTTAACAGAAGTGGTGAACCAATGTCCATTATTGAAATCCTTCTGTTTTTTTTTTTCAAACAACGAAATCAATGTTTTCGCCTTTGACTGTGCAATTAGTTTTTACGTGGGTAATTTCCATAACGGCCTCATAGAATTCAGTCCTAAAATCTCATTCTATTTGTGTCTGAGCCACGAAGTTCCTTTTTTGTTCTCCTAACACATGCTACCATGCTTGTTTTTATATATTTGGAATGTTTCTTGGAGCACTGTTGGTTACAACTTCTGTCTCTCTCAGTCTCATACTCCTGCAACCCTTTGAATTTTCAGATTTAGAGTTTATTAATGATTATGCTTTCCCCCTGACATCTAACAGATAATATTCTTGTGCAGGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGGTACTGATTTATATTTTATGCTATTGTTTGTTGGTTTGTTTTGGACCTTTTGGTAAACAATATAACTGATAATTCACTTATTCTTTGAACGAAATCCTTTCCCATTTGATACCATAGCTGAAGATTGCTTGCTAGTTGCTACTGATGAATATGTTGTCTTGGCTGATAATCATCTTCTGCAAATTAAATTTGAGTTTTCGTTCTTAAATGTGAGGACTTTTACTAATCTACTTTTACTTCCAATATGCCATTGGTTTCTTCTACATCAAGCATCTCACCTTTTCTATAGTATTATTTTCAGATTTGTTAAAGACTACTCCCCAGTTCATTTTTAAGTGTTTTTTAGAACTTTATGTTACTCCCTCTGCCTCTAATTATAAGACCCCTTTCCACTTTTTATTGTCCCTTAATATAAGATCCTTTTCAAAATTCTATATGCATTAATGATTTATTTACAAAAATACACCTGTTTAAAGCACCATTGAGAAACATAAATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGATATCAATAATTTATAGGGATAAGTACGTAAAAATAACTCTTTGACAAATTAATTACCACAACTACTTTTCTTAATACCCTTGAACTTCGCTGGAGAGTCTTATGATAAGGGACGGAGTGAGTACTGTAAATATGTAAATAATCAAAGTGAAAGTAATATTAACTATTTTTTTGACAATAATATCTTTTAACTATTTATTGAAGAAAGAAAAATACTTAGAACGAGATAAAAACTGTCAAGAGCATCACAAGAAAAAAGACAATTTAATCATTTTTTTAATGAATTTCCTTGGTATTTGTGAAAATTTTTAAACCAACACTTAAAAGAAATGGAGATTGTATTGCTTACATTTAGTAAAAAAAAAAAAAAATTGAATCACAAGTTGACGTGTAGTGGCAGCAACCAGGGTATAAAAAAATTCTAACAAGCAGATGCAGCAACATATGTATAGAGGGCTAATCATATTCCAAGATGTAACTCATATCCTGAATGATTTCAGTCCAACAAAAAACTGTCAATTAGGTGCACTGGTCAGGATTTTAAACTGCAGGCCGCATCACATGATGGGGTCCACAGGGGCATCTGCCTGCAATTACATTGTGTTTATAAATCACGGAAAAACCGACTTTGGCCACACCACCGAGATGATAACCGGTTATCTCTTGCACTAGATTTAAAGTTATTTGTTTCCAGATGTCTCTACTGCACAAGTGTCATTGATGTACCTTTCATTGCCTACTAGTGAAGAGGGTATTACTATCTATTAGTATGCTTGGGAAGAGGGATTACTGTCAAACCACCAAAGTTCATTCAGGCATCCATTTATGCAGCAAGACAAAAGTTATGGGCTGCTCGTTAGTTTTTTGGTGGACAGAAATCATTAAGGAGCTGTATGAGTGCACATCTGACATATGATTATGCTTGTGCACATTGTTGCTGCATGCTAGAAGTTTAGTACCTATTTGCTTCCACTAAACAACTGCGATTTCTTTTTTTAGTAGCCAGCGGTGGCGCAACGGCTGCCGTTGTTTTTTTAGTTTTGTGTGACACTATAGCGTCACTATTGGGTTGCAAGAGTGGAACCAATCTTAAACCCCAAAATGAGTTTAAAATTATTAGGTTATAAAGGTAGATTTGGGGTATTTCCATTGTTAATTATGAATCTTGAGTTTTTTGTTTGTTATCTTGAGCATTTATATAAGTGTTGTGTTGACTTTTTTATTTATATAAAATATTTTAGAATCCCTACGTGAGCAATTTGCTAATGTGCTATGGGACTGGTGGATGTACACTGCTATCCAAGATTGATAATTCTGTTAAATAGTTAAAGGAAAAGAGAGACTACAGAAAACTATAGGTCACATTATCATGTGAAATATAGAATTAAATGGTTTATCTGTAGATATCATCACAGAACATTATGGCATTAGTTGATCCATGTAAAAGAGCCAATACCACCTAGTGGGAAAAGATTTTGGTGGTTGTATAAATTTTGAATCATCCATGTTAAAACACACTACAAAAAATTTAGAAATCTCAATTAATTTTTGACACACTAGTATGGTGTACTCACTCACATTTTTTCTTGATGATTTTTAAAGTCTTGCCTGTTATTTATACATATTATTTTTGTAATTGAATATAGTATCCCTTTAAATAATTTTTCTTTCAGTATTATTTGAAATTTTTTAAAAATTCCCTACAATGTACTATATGTGTACTAAGTAGTTAATCATGAATGCACATGTTTTATTAGTTGAAGGTTACTTGCATATGATATGGAAAATCAAGAATAGGGAAATTTTACCGATTCAAAGATTTAAGAGATACAAAAGAATAGTTTGGCAAGTATGATTTTCAAGTGTGCTTTGTTTCATCACCTTATGAAGTTTGTTTGCTGTTAGTATTGTATTTTTAGCTACCAGCCTAATAGATGTTAGCTATCTATAGTGATTGGATGACAACTGACCTGTTTTATTTGTGTGTAGCTTATGGAAAAAGTGATTCCTGTTGTGGAGCAGCGAAGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAGATCATATTTGCTGGTGGTACAAGATGTGAACTGAAGATTGTGGGAAATAATAAAATGGGCAAATTAATCATTATTTATCAAATCAAAATAGTTAGTCTCAAGGGTAACTGTGGTTAATGATAAGAGATAGAAGGAATCAGTACCTGAATGGAGTACATAAGAAATGTCTTTTGCTCATTTTATGGAGATAAAAGCAGAATTGTGAAGTTGGACCATGTAGTTTAGATACAATGTAGGCATCCTGGTCTCACCCCTGTGCAGACTGCAAATGTGCTAGTAGAGGGCAAAGGGGATTGTAGACGACTATATGATGTAGTCACGGTTTAG
Protein sequence

>MS.gene60690.t1

MASSKLMPSSDPPSSPSPKPHFTTANFLDDQISLADAVATPRTVDNVWREIVAGDVISGDRECKEEISDEMMTLEDFLVKAGAVEDEEEGEDVKMTIPLSETLSGSGMFSLDSSFQGIENVDGSVIGFGNGNGNGNGNVNGVEMVEGGGRGKRGRPVMEQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKERFKQLMEKVIPVVEQRRPPRLLRRVRSLQWHPGLTPVQTANVLVEGKGDCRRLYDVVTV