AlfalfaGEDB | MS.gene05134

M. sativa cultivar XinJiangDaYe / MS.gene05134

KEGG: K03238
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0006413 GO:0008135 GO:0008150 GO:0008152 GO:0009987 GO:0044237 GO:0045182 GO:0090079 GO:0097159 GO:1901363
PFAM: PF01873.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05134.t1	XP_013460480.1	93.7	270	16	1	1	270	1	269	1.10E-127	466.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05134.t1	P55871	74.1	270	68	2	1	268	1	270	1.1e-99	364.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05134.t1	A0A072UZG4	93.7	270	16	1	1	270	1	269	8.1e-128	466.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene05134	0.870495	1.40E-66	-1.69E-46
MS.gene049341	MS.gene05134	0.838281	3.16E-57	-1.69E-46
MS.gene050277	MS.gene05134	0.871544	6.30E-67	-1.69E-46
MS.gene050303	MS.gene05134	0.81411	1.82E-51	-1.69E-46
MS.gene050437	MS.gene05134	0.823197	1.58E-53	-1.69E-46
MS.gene050689	MS.gene05134	0.816107	6.56E-52	-1.69E-46
MS.gene050752	MS.gene05134	0.824045	9.98E-54	-1.69E-46
MS.gene050807	MS.gene05134	0.805862	1.09E-49	-1.69E-46
MS.gene050815	MS.gene05134	0.82123	4.51E-53	-1.69E-46
MS.gene050955	MS.gene05134	0.816564	5.18E-52	-1.69E-46

Showing 1 to 10 of 397 entries

Previous1 2 3 4 5…40Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene025997	MS.gene05134	PPI
MS.gene040581	MS.gene05134	PPI
MS.gene05134	MS.gene018560	PPI
MS.gene05134	MS.gene63721	PPI
MS.gene05134	MS.gene058030	PPI
MS.gene05134	MS.gene024538	PPI
MS.gene05134	MS.gene003452	PPI
MS.gene05134	MS.gene050556	PPI
MS.gene05134	MS.gene64519	PPI
MS.gene05134	MS.gene061898	PPI

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05134.t1	MTR_3g467620	98.148	270	4	1	1	270	1	269	0.0	540
MS.gene05134.t1	MTR_5g075530	83.942	274	39	3	1	269	49	322	4.67e-147	414
MS.gene05134.t1	MTR_5g075530	77.457	173	34	3	1	168	49	221	6.43e-68	210

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05134.t1	AT5G20920	75.000	268	62	5	1	265	1	266	2.26e-131	373
MS.gene05134.t1	AT5G20920	75.000	268	62	5	1	265	1	266	2.26e-131	373
MS.gene05134.t1	AT5G20920	75.000	268	61	6	1	265	1	265	4.99e-130	369
MS.gene05134.t1	AT3G07920	70.395	152	37	2	118	265	17	164	9.98e-71	215
MS.gene05134.t1	AT5G01940	57.042	142	56	3	114	254	72	209	6.17e-49	161
MS.gene05134.t1	AT5G01940	57.042	142	56	3	114	254	104	241	8.98e-49	162
MS.gene05134.t1	AT5G01940	53.846	156	63	4	114	262	72	225	9.80e-47	156

Showing 1 to 7 of 7 entries

Previous1Next

Find 59 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCTTCGAAGTTCTT+TGG	0.281091	3.4:+64592938	None:intergenic
AAGAATGCCATGACATGATC+TGG	0.500649	3.4:+64593031	None:intergenic
AAGATCAGTTGCACCTATCA+AGG	0.492968	3.4:-64592154	MS.gene05134:CDS
AATCTGTGCTTCATCTGCCA+TGG	0.597125	3.4:+64595002	None:intergenic
ACAGATTGATGTGAAGGAAG+AGG	0.574813	3.4:-64594986	MS.gene05134:CDS
ACAGCAGAGATTGGTTGTGA+AGG	0.584946	3.4:-64592972	MS.gene05134:CDS
ACCGACGGAGAACTGTTATG+AGG	0.549889	3.4:-64593450	MS.gene05134:CDS
AGAACCGTTTGTTCTTTCTC+CGG	0.497985	3.4:-64592761	MS.gene05134:CDS
AGAGATTGGTTGTGAAGGGA+AGG	0.537518	3.4:-64592967	MS.gene05134:CDS
ATCATCAAGATCTACCACTG+CGG	0.727185	3.4:+64594675	None:intergenic

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCCTTCGAAGTTCTT+TGG	+	chr3.4:64594172-64594191	None:intergenic	30.0%
AATCTGCAATTAACAAATCC+AGG	+	chr3.4:64592372-64592391	None:intergenic	30.0%
AATTAGAATTGTTCAAGGAC+AGG	+	chr3.4:64592593-64592612	None:intergenic	30.0%
AGGCTAATTAGAATTGTTCA+AGG	+	chr3.4:64592598-64592617	None:intergenic	30.0%
ATATATCAGTAAGTATCTCG+TGG	-	chr3.4:64594198-64594217	MS.gene05134:intron	30.0%
CAATAATTCAAATGACCTAC+AGG	+	chr3.4:64592685-64592704	None:intergenic	30.0%
CAATTTAAGGAAATAAAGCG+GGG	-	chr3.4:64594850-64594869	MS.gene05134:intron	30.0%
CACAGCCTATAAAACTAATA+TGG	+	chr3.4:64593242-64593261	None:intergenic	30.0%
GCTACATGTATAATACATGT+AGG	-	chr3.4:64593782-64593801	MS.gene05134:intron	30.0%
GTAGGTCATTTGAATTATTG+TGG	-	chr3.4:64592685-64592704	MS.gene05134:intron	30.0%

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	64592107	64595022	64592107	ID=MS.gene05134
chr3.4	mRNA	64592107	64595022	64592107	ID=MS.gene05134.t1;Parent=MS.gene05134
chr3.4	exon	64594978	64595022	64594978	ID=MS.gene05134.t1.exon1;Parent=MS.gene05134.t1
chr3.4	CDS	64594978	64595022	64594978	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64594632	64594740	64594632	ID=MS.gene05134.t1.exon2;Parent=MS.gene05134.t1
chr3.4	CDS	64594632	64594740	64594632	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64594445	64594500	64594445	ID=MS.gene05134.t1.exon3;Parent=MS.gene05134.t1
chr3.4	CDS	64594445	64594500	64594445	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64594251	64594308	64594251	ID=MS.gene05134.t1.exon4;Parent=MS.gene05134.t1
chr3.4	CDS	64594251	64594308	64594251	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64594071	64594159	64594071	ID=MS.gene05134.t1.exon5;Parent=MS.gene05134.t1
chr3.4	CDS	64594071	64594159	64594071	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64593382	64593527	64593382	ID=MS.gene05134.t1.exon6;Parent=MS.gene05134.t1
chr3.4	CDS	64593382	64593527	64593382	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64592924	64593066	64592924	ID=MS.gene05134.t1.exon7;Parent=MS.gene05134.t1
chr3.4	CDS	64592924	64593066	64592924	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64592752	64592837	64592752	ID=MS.gene05134.t1.exon8;Parent=MS.gene05134.t1
chr3.4	CDS	64592752	64592837	64592752	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1
chr3.4	exon	64592107	64592187	64592107	ID=MS.gene05134.t1.exon9;Parent=MS.gene05134.t1
chr3.4	CDS	64592107	64592187	64592107	ID=cds.MS.gene05134.t1;Parent=MS.gene05134.t1

Gene Sequence

>MS.gene05134

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATGTAAGTTTGCACAATTGATTTTGGTAGTTTTATGCATTGGCTTTCCTATACATGTTTCATGTGACTGGTTATAACTTATAAGGCTTTTTTTAAATTATATAATGCGAATTGCTATTTCTGAGCATGACTTTTTAGTGACTTGTATTCTTAGTTGGTGCTTCAAATCTCTTTGATTTGTTGGCGCTTTAGTTTGTTGAAATTGTACTACCTTCTAATGCCTGGATTTGTTAATTGCAGATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGGTATTGAAATTGAAATTGAAATAGCATTTGTTTTATTTTATGCTATTAAGTTTTGGTCTTTAATGTTATTTTCTGAGGCATCTGTTATTGTGCCTGTCCTTGAACAATTCTAATTAGCCTTTTAACTGCAGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTAGGTCATTTGAATTATTGTGGTTACGTTAACAAATATTTTTTTCACTCTTGCAATGTCTTAAGCTGTTGAGCTTTTGATGTTGCTATTTCTTTTGTTTGAAACAGTTTCACAATATTTTTATTGTTGATTGTAGGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGGTAAGCCAACTCTCAAACACAATTTATATCATGCCTTAATTCTTAAGGGAAATTAATTGGAAGCTGAAGATTTTGTATATTATCTCCTCAGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGGTATAAAATATTTTGCATGCTTTCTGTTGTGATATGCCTCTCCCTTGAAATGCGGTGTAAAATTATTCTCTAATGCTCATACCCTCACCTAGTTCCATAAATGTTTCTCAACTGAATTATCTTTTTATGCTACTTTTCATATTTGGATAGTGGTTCTTGTGGATCTCAACTTTTATGTCGCCATATTAGTTTTATAGGCTGTGTTTTGGGTGGGGTCTTTGCATATTTTGGAATTTTTAACATGGAACTTATTGTGTGACGATCTACATCTACCTCCTCAAATATGTGTTTATATGGATTCTGCTCTCAAGGGTGTGTTTGTGTGACTTTATAGTGTCAAGTTTATTGAGTCGTTGTTGTATTATTGGTGTGGGTTCTCCAACAATAGCTTCATGATATATTACTAAGTATTTTTACTTTCTCTACTTTTGCTCTTTGTTGGTTGAAATGTTTTGCATTTTCTTCTGTTATCATAGGTAGTATTTGTTTAGTTTTGGTTGTATTTTGTTTCATCTCTCTGCATTCTGATGTTTTTCTGTGCAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGTATGTTGATTTGTAATTTATTATTCAGTTGTTGGCTACATGTATAATACATGTAGGCATGTTTTTATGGACAAAACCTAGACGCATTTTCTTAGGTGATTTTGGTGTTGTTCTTAACTTGAAATATATTCATGATTTCTTTAAATCCCTAATTTTCTCAAATAACTACAAAGTGTATTTTAATTTAAGAACAACATGAAAAGCACATCAGGAAAAACATCTAAGTTTTGTTTATTTTCCTTTCTATATTGCATTAAAATCCTACTTTTGTCTTCCATTATCATTTTGTTTATGTCTTGCTACCTTGTCTTTTAGGATGCATCGGCAGCCAGATCATGTCATGGCATTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAGTAAGTATCTCGTGGATCTTGAATTTCTGTATATGAAGTATAAAGCCTTCGAGTAAAAATTGACCTATATATTTTGTTCTTTTTAGATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGGTGAAATTTCTATGCTCCTATTCCCTCTCTATGTATATCTCTGCAACCTACGGAAATTGTAGAGCGCCGGTGAATTGGTTCCTGAAATTAAGAAATTGATAACCAAGCCTTATCCCATTGAGTGGGGTTGGCTACATGAATCAAACAACGCCATAGTGTTCTATCAAAAAACATGTCTTCTCCAACTCATTAATCTCTAGGTCCTTTTTAATAGTTTCTCTTATAGTCTTTCTAGGTCTTCCTCTAGGTCTCCAACTCATATATCCTGTAGGAAAATGTTTCAAATTAGTTCATGCTTCCTTAAGTTGAATATTTCAAATCCAATTGATCCATGAAAAATTGCTTATGAAAGTTGAATTAGTTCTCATGTTAGCTTAACATAGTACATAACTTATGAATGACTAAAATGACCGAACAATTTCAATGATATTTTCCGTAATATGTTTTTAGAGACTGATCTAACATCACCCTACAATTTAAGGAAATAAAGCGGGGCTAAACTCAACAAATATCTTTTACTTTATGATGATGGGATATCTTATAATTGTAGTGTATTGCTTGCAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>MS.gene05134.t1

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT