AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60840.t1 MTR_1g090973 75.000 276 64 2 1 273 1 274 2.90e-139 393
MS.gene60840.t1 MTR_1g090960 59.929 282 66 5 1 273 1 244 2.20e-104 303
MS.gene60840.t1 MTR_3g047140 53.875 271 122 3 1 270 1 269 3.88e-91 271
MS.gene60840.t1 MTR_0163s0020 51.254 279 129 4 1 275 2 277 4.05e-87 261
MS.gene60840.t1 MTR_0684s0020 51.254 279 129 4 1 275 1 276 5.50e-87 261
MS.gene60840.t1 MTR_3g054170 52.893 242 110 3 21 262 17 254 1.51e-81 246
MS.gene60840.t1 MTR_3g054180 53.909 243 108 3 21 262 21 260 1.55e-81 246
MS.gene60840.t1 MTR_3g054200 52.066 242 112 3 21 262 17 254 7.85e-78 236
MS.gene60840.t1 MTR_1g090943 47.431 253 128 4 14 265 15 263 2.66e-67 211
MS.gene60840.t1 MTR_3g027280 46.528 288 135 11 1 276 1 281 8.30e-62 196
MS.gene60840.t1 MTR_1g090957 44.599 287 130 12 1 276 1 269 2.02e-55 180
MS.gene60840.t1 MTR_1g090937 41.455 275 141 10 1 266 1 264 4.62e-54 176
MS.gene60840.t1 MTR_1g090930 41.935 279 138 11 1 266 1 268 5.53e-49 164
MS.gene60840.t1 MTR_8g068040 37.500 264 140 9 14 263 10 262 1.36e-42 146
MS.gene60840.t1 MTR_4g056320 37.269 271 121 9 2 266 6 233 9.66e-42 144
MS.gene60840.t1 MTR_8g068030 36.466 266 144 9 14 263 10 266 8.01e-41 142
MS.gene60840.t1 MTR_8g023510 38.060 268 151 10 1 262 1 259 1.07e-37 134
MS.gene60840.t1 MTR_5g031160 36.237 287 146 13 6 262 8 287 2.17e-37 134
MS.gene60840.t1 MTR_5g031120 38.618 246 129 11 35 262 38 279 1.02e-36 132
MS.gene60840.t1 MTR_5g031100 37.143 245 133 10 35 262 38 278 1.89e-36 131
MS.gene60840.t1 MTR_5g031140 37.652 247 133 11 33 262 44 286 1.27e-35 129
MS.gene60840.t1 MTR_4g023810 36.864 236 140 6 30 263 27 255 3.13e-35 127
MS.gene60840.t1 MTR_8g068050 34.926 272 157 9 11 270 18 281 1.09e-32 126
MS.gene60840.t1 MTR_8g067980 34.599 237 139 8 36 260 25 257 8.72e-31 115
MS.gene60840.t1 MTR_4g093080 32.463 268 162 8 17 272 9 269 1.71e-28 114
MS.gene60840.t1 MTR_8g067990 34.247 219 129 8 53 260 43 257 4.24e-28 108
MS.gene60840.t1 MTR_4g056360 32.463 268 134 11 2 262 6 233 6.99e-28 108
MS.gene60840.t1 MTR_8g067940 33.696 276 155 13 8 262 13 281 2.52e-27 107
MS.gene60840.t1 MTR_7g115740 32.031 256 152 9 23 263 13 261 6.16e-26 107
MS.gene60840.t1 MTR_4g093110 34.231 260 143 13 19 263 19 265 6.43e-26 107
MS.gene60840.t1 MTR_8g067735 33.197 244 145 9 35 265 43 281 1.27e-25 106
MS.gene60840.t1 MTR_1g014240 36.066 244 135 10 38 265 40 278 1.40e-25 106
MS.gene60840.t1 MTR_4g093140 32.558 258 150 12 19 263 19 265 7.18e-25 104
MS.gene60840.t1 MTR_8g067690 34.034 238 144 7 35 262 60 294 1.23e-23 100
MS.gene60840.t1 MTR_8g067720 30.996 271 167 9 9 269 4 264 1.38e-23 100
MS.gene60840.t1 MTR_4g093070 29.960 247 157 7 29 263 25 267 5.64e-23 98.6
MS.gene60840.t1 MTR_7g116130 31.907 257 159 8 23 267 14 266 7.51e-23 98.2
MS.gene60840.t1 MTR_8g067960 35.185 216 124 9 58 262 31 241 1.74e-22 93.6
MS.gene60840.t1 MTR_5g031090 31.707 246 147 10 35 262 33 275 1.91e-22 94.0
MS.gene60840.t1 MTR_3g463370 31.636 275 134 8 11 275 6 236 7.21e-22 91.7
MS.gene60840.t1 MTR_8g067930 31.086 267 167 9 16 269 4 266 7.32e-22 95.5
MS.gene60840.t1 MTR_5g031030 30.579 242 151 8 35 262 36 274 3.23e-21 90.9
MS.gene60840.t1 MTR_8g067630 33.486 218 132 6 35 242 30 244 5.19e-21 92.8
MS.gene60840.t1 MTR_4g093040 31.890 254 154 8 5 243 3 252 3.59e-20 90.5
MS.gene60840.t1 MTR_4g093040 38.235 170 90 6 87 243 3 170 1.42e-18 85.5
MS.gene60840.t1 MTR_5g025020 29.600 250 143 10 33 256 39 281 7.04e-17 80.9
MS.gene60840.t1 MTR_5g077100 32.258 217 125 8 59 264 49 254 7.04e-16 77.8
MS.gene60840.t1 MTR_7g063030 31.760 233 134 9 48 261 37 263 3.37e-15 75.9
MS.gene60840.t1 MTR_3g068025 25.899 278 172 8 15 266 6 275 3.69e-15 75.5
MS.gene60840.t1 MTR_7g062940 28.244 262 156 10 22 261 7 258 3.85e-15 75.5
MS.gene60840.t1 MTR_7g063030 30.534 262 147 11 29 261 2 257 4.83e-15 75.1
MS.gene60840.t1 MTR_0015s0030 31.092 238 138 11 38 258 23 251 7.86e-15 74.7
MS.gene60840.t1 MTR_7g115740 30.323 155 98 5 23 171 13 163 1.06e-12 68.2
MS.gene60840.t1 MTR_1g048360 28.283 198 123 7 74 260 71 260 2.97e-12 67.0
MS.gene60840.t1 MTR_7g062890 27.778 270 170 9 16 266 1 264 3.61e-12 66.6
MS.gene60840.t1 MTR_7g062950 27.341 267 164 10 16 261 1 258 1.63e-11 64.7
MS.gene60840.t1 MTR_7g062770 28.692 237 140 9 48 261 33 263 3.13e-11 63.9
MS.gene60840.t1 MTR_7g062750 27.068 266 157 12 22 261 7 261 3.19e-11 63.9
MS.gene60840.t1 MTR_1g099260 28.866 194 123 7 76 260 62 249 5.06e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60840.t1 AT5G65600 36.087 230 129 8 35 249 35 261 4.67e-27 110
MS.gene60840.t1 AT5G10530 35.102 245 135 11 35 263 19 255 7.18e-25 104
MS.gene60840.t1 AT5G06740 32.171 258 144 12 22 259 11 257 9.20e-20 89.4
MS.gene60840.t1 AT5G06740 32.171 258 144 12 22 259 23 269 9.63e-20 89.4
MS.gene60840.t1 AT5G55830 30.712 267 158 11 14 260 7 266 2.09e-18 85.1
MS.gene60840.t1 AT4G29050 29.386 228 136 8 54 261 53 275 1.86e-17 82.4
MS.gene60840.t1 AT4G29050 29.386 228 136 8 54 261 39 261 1.90e-17 82.4
MS.gene60840.t1 AT3G08870 26.800 250 157 7 35 260 33 280 3.44e-16 78.6
MS.gene60840.t1 AT3G08870 26.800 250 157 7 35 260 54 301 3.52e-16 78.6
MS.gene60840.t1 AT3G53810 27.273 253 158 8 29 261 18 264 1.59e-15 76.6
MS.gene60840.t1 AT5G03140 29.880 251 161 8 17 256 11 257 4.01e-15 75.5
MS.gene60840.t1 AT2G29220 27.305 282 158 11 16 265 7 273 2.10e-14 73.6
MS.gene60840.t1 AT2G29250 28.235 255 157 9 23 258 14 261 4.41e-14 72.4
MS.gene60840.t1 AT2G43700 28.311 219 126 9 73 268 47 257 7.24e-14 71.6
MS.gene60840.t1 AT1G70110 26.506 249 156 9 39 268 24 264 7.55e-14 71.6
MS.gene60840.t1 AT2G43700 28.037 214 125 8 73 263 23 230 9.61e-14 71.2
MS.gene60840.t1 AT2G43700 28.037 214 125 8 73 263 23 230 9.61e-14 71.2
MS.gene60840.t1 AT2G43700 28.037 214 125 8 73 263 23 230 9.61e-14 71.2
MS.gene60840.t1 AT2G43700 28.037 214 125 8 73 263 23 230 9.61e-14 71.2
MS.gene60840.t1 AT2G37710 27.490 251 156 10 31 261 20 264 1.21e-13 71.2
MS.gene60840.t1 AT5G01540 26.744 258 159 9 30 260 24 278 2.26e-13 70.5
MS.gene60840.t1 AT5G01560 28.807 243 145 8 43 260 35 274 3.25e-13 69.7
MS.gene60840.t1 AT5G01550 25.874 286 175 9 6 260 11 290 6.82e-13 68.9
MS.gene60840.t1 AT4G04960 31.667 240 138 8 36 256 21 253 8.23e-13 68.6
MS.gene60840.t1 AT4G04960 31.535 241 139 8 35 256 20 253 9.59e-13 68.6
MS.gene60840.t1 AT4G02410 25.869 259 166 9 29 267 20 272 1.29e-12 68.2
MS.gene60840.t1 AT3G53380 31.429 210 125 7 59 256 42 244 2.43e-12 67.4
MS.gene60840.t1 AT4G02420 27.444 266 164 11 17 261 6 263 2.61e-12 67.0
MS.gene60840.t1 AT5G60310 25.342 292 172 14 10 276 5 275 1.04e-11 65.5

Find 67 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACCTTGGAGTTGTTAA+TGG 0.284776 1.4:-73019479 MS.gene60840:CDS
GAAAAGTTTGCAATATTGTT+TGG 0.291665 1.4:+73019089 None:intergenic
AATTCCAACATGTGAGTGTT+TGG 0.311826 1.4:+73019391 None:intergenic
TGACTAACACAACAGAAAAT+AGG 0.328825 1.4:+73019861 None:intergenic
AAAAGTTTGCAATATTGTTT+GGG 0.329321 1.4:+73019090 None:intergenic
AACAGAGTTGGCAGGAATAT+TGG 0.331936 1.4:+73019505 None:intergenic
TAAAGACAGTGAAATGGAAT+AGG 0.341311 1.4:-73019346 MS.gene60840:CDS
ATAAAACACCAGTGCCCATC+TGG 0.359355 1.4:-73019646 MS.gene60840:CDS
GTCCTCACAATCCATTTGTT+GGG 0.372402 1.4:-73019451 MS.gene60840:CDS
ATTCCAACATGTGAGTGTTT+GGG 0.396108 1.4:+73019392 None:intergenic
ATACTAGTTCCACTGGTTCA+TGG 0.408344 1.4:-73019418 MS.gene60840:CDS
TTTCTTTAAAGACAGTGAAA+TGG 0.423423 1.4:-73019352 MS.gene60840:CDS
AAACCAATCCTTACGGTGTC+AGG 0.427333 1.4:+73019194 None:intergenic
ATAGTTGAAAAGGTACCATC+TGG 0.449708 1.4:+73019248 None:intergenic
TCAAACTCTACCCCAACAAA+TGG 0.455076 1.4:+73019440 None:intergenic
ACTGAAGTTGGTAACGTTGA+AGG 0.470628 1.4:+73019778 None:intergenic
AGTCCTCACAATCCATTTGT+TGG 0.471870 1.4:-73019452 MS.gene60840:CDS
AAAGACAGTGAAATGGAATA+GGG 0.472851 1.4:-73019345 MS.gene60840:CDS
AACTCTGTTGGTGGAAACCT+TGG 0.476055 1.4:-73019491 MS.gene60840:CDS
CTTCCTGACACCGTAAGGAT+TGG 0.482184 1.4:-73019197 MS.gene60840:CDS
GCAGGAATATTGGCTCGATC+TGG 0.482568 1.4:+73019515 None:intergenic
GAGTTTGATACTAGTTCCAC+TGG 0.484484 1.4:-73019425 MS.gene60840:CDS
TACTAGTTCCACTGGTTCAT+GGG 0.490856 1.4:-73019417 MS.gene60840:CDS
GTTTATTGTCACGATTCCAT+TGG 0.495823 1.4:+73019709 None:intergenic
TGTCTTAGAGAGATTGTCAT+AGG 0.497716 1.4:+73019292 None:intergenic
GACTTGAGCAATAGTTGAAA+AGG 0.505448 1.4:+73019238 None:intergenic
CCCATCTGGGATAGTACCAC+TGG 0.510562 1.4:-73019632 MS.gene60840:CDS
GGATTTACTAGTACTGAAGT+TGG 0.513910 1.4:+73019766 None:intergenic
GTACTATCCCAGATGGGCAC+TGG 0.526324 1.4:+73019638 None:intergenic
ATTCCTGCCAACTCTGTTGG+TGG 0.528629 1.4:-73019500 MS.gene60840:CDS
TTGACTTGAAAGACCATGCA+TGG 0.529588 1.4:+73019129 None:intergenic
ATGGTCTTTCAAGTCAAACT+TGG 0.540749 1.4:-73019123 MS.gene60840:CDS
GCCAGTGGTACTATCCCAGA+TGG 0.541020 1.4:+73019631 None:intergenic
CAGTGCTTCCTGACACCGTA+AGG 0.541263 1.4:-73019202 MS.gene60840:CDS
AATATTCCTGCCAACTCTGT+TGG 0.548051 1.4:-73019503 MS.gene60840:CDS
AAGGTTTCCACCAACAGAGT+TGG 0.550040 1.4:+73019493 None:intergenic
TTTCCACCAACAGAGTTGGC+AGG 0.550472 1.4:+73019497 None:intergenic
AAATCACGGAACTTCCATGC+AGG 0.555393 1.4:+73019735 None:intergenic
ATGAAGACAAGTCCACTAGC+AGG 0.558627 1.4:+73019548 None:intergenic
ATCGTGACAATAAACAATCC+AGG 0.562463 1.4:-73019701 MS.gene60840:CDS
ATCGATGAAACCAAATCAGA+TGG 0.568016 1.4:+73019064 None:intergenic
GGAATATTGGCTCGATCTGG+TGG 0.573690 1.4:+73019518 None:intergenic
GTTGTTGTATATTACCCAGA+TGG 0.588747 1.4:-73019263 MS.gene60840:CDS
GTCTACAACTTTGAATGTGA+AGG 0.589624 1.4:+73019586 None:intergenic
TCCTCACAATCCATTTGTTG+GGG 0.590344 1.4:-73019450 MS.gene60840:CDS
AATTACACCACCTCCATGCA+TGG 0.590958 1.4:-73019142 MS.gene60840:CDS
ACCCCAACAAATGGATTGTG+AGG 0.592855 1.4:+73019449 None:intergenic
GATCCCAAACACTCACATGT+TGG 0.594093 1.4:-73019395 MS.gene60840:CDS
TGTTTCCATTAACAACTCCA+AGG 0.599188 1.4:+73019474 None:intergenic
GATTCCATTGGATAAAATCA+CGG 0.599248 1.4:+73019721 None:intergenic
GTTTGCAATATTGTTTGGGG+TGG 0.603693 1.4:+73019094 None:intergenic
TAAAACACCAGTGCCCATCT+GGG 0.609108 1.4:-73019645 MS.gene60840:CDS
GAATAGGGTGAGTGGCGCCT+TGG 0.611314 1.4:-73019330 MS.gene60840:CDS
ATGGAGGTGGTGTAATTGAC+GGG 0.612662 1.4:+73019148 None:intergenic
ATTTGTTGGAAAGAAAGCCA+TGG 0.619705 1.4:+73019889 None:intergenic
CATGGAGGTGGTGTAATTGA+CGG 0.621874 1.4:+73019147 None:intergenic
TGAAAGACCATGCATGGAGG+TGG 0.622892 1.4:+73019135 None:intergenic
TTGACGGGCAGCTGTTGTCG+AGG 0.628538 1.4:+73019163 None:intergenic
TACAACTTTGAATGTGAAGG+AGG 0.642965 1.4:+73019589 None:intergenic
AATCACGGAACTTCCATGCA+GGG 0.643209 1.4:+73019736 None:intergenic
GTGAAATGGAATAGGGTGAG+TGG 0.643420 1.4:-73019338 MS.gene60840:CDS
CCAGTGGTACTATCCCAGAT+GGG 0.650654 1.4:+73019632 None:intergenic
TAGTTGAAAAGGTACCATCT+GGG 0.650948 1.4:+73019249 None:intergenic
TTTGGGATCCCATGAACCAG+TGG 0.654947 1.4:+73019409 None:intergenic
GAAGCTAGCAACGTTGCCAG+TGG 0.662249 1.4:+73019616 None:intergenic
AAAGTTTGCAATATTGTTTG+GGG 0.709279 1.4:+73019091 None:intergenic
ACTTGAAAGACCATGCATGG+AGG 0.765988 1.4:+73019132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTTGCAATATTGTTT+GGG + chr1.4:73019879-73019898 None:intergenic 20.0%
! AAAGTTTGCAATATTGTTTG+GGG + chr1.4:73019878-73019897 None:intergenic 25.0%
! GAAAAGTTTGCAATATTGTT+TGG + chr1.4:73019880-73019899 None:intergenic 25.0%
!! TTTCTTTAAAGACAGTGAAA+TGG - chr1.4:73019614-73019633 MS.gene60840:CDS 25.0%
!!! GAAAATAGGTTTTGATTTGT+TGG + chr1.4:73019094-73019113 None:intergenic 25.0%
AAAGACAGTGAAATGGAATA+GGG - chr1.4:73019621-73019640 MS.gene60840:CDS 30.0%
GATTCCATTGGATAAAATCA+CGG + chr1.4:73019248-73019267 None:intergenic 30.0%
TAAAGACAGTGAAATGGAAT+AGG - chr1.4:73019620-73019639 MS.gene60840:CDS 30.0%
TGACTAACACAACAGAAAAT+AGG + chr1.4:73019108-73019127 None:intergenic 30.0%
! ATTCGACCTACAACATTTTT+AGG + chr1.4:73019295-73019314 None:intergenic 30.0%
! TTCGACCTACAACATTTTTA+GGG + chr1.4:73019294-73019313 None:intergenic 30.0%
AATTCCAACATGTGAGTGTT+TGG + chr1.4:73019578-73019597 None:intergenic 35.0%
AGCAGAAAAACCAATCCTTA+CGG + chr1.4:73019782-73019801 None:intergenic 35.0%
ATCGTGACAATAAACAATCC+AGG - chr1.4:73019265-73019284 MS.gene60840:CDS 35.0%
ATTCCAACATGTGAGTGTTT+GGG + chr1.4:73019577-73019596 None:intergenic 35.0%
GACTTGAGCAATAGTTGAAA+AGG + chr1.4:73019731-73019750 None:intergenic 35.0%
GTCTACAACTTTGAATGTGA+AGG + chr1.4:73019383-73019402 None:intergenic 35.0%
GTTGTTGTATATTACCCAGA+TGG - chr1.4:73019703-73019722 MS.gene60840:CDS 35.0%
GTTTATTGTCACGATTCCAT+TGG + chr1.4:73019260-73019279 None:intergenic 35.0%
TACAACTTTGAATGTGAAGG+AGG + chr1.4:73019380-73019399 None:intergenic 35.0%
TGTCTTAGAGAGATTGTCAT+AGG + chr1.4:73019677-73019696 None:intergenic 35.0%
TGTTTCCATTAACAACTCCA+AGG + chr1.4:73019495-73019514 None:intergenic 35.0%
! AGTTCCGTGATTTTATCCAA+TGG - chr1.4:73019241-73019260 MS.gene60840:CDS 35.0%
! ATGGTCTTTCAAGTCAAACT+TGG - chr1.4:73019843-73019862 MS.gene60840:CDS 35.0%
! GGAGATTTTTACATTCACCA+AGG + chr1.4:73019656-73019675 None:intergenic 35.0%
! GGATTTACTAGTACTGAAGT+TGG + chr1.4:73019203-73019222 None:intergenic 35.0%
!! ATAGTTGAAAAGGTACCATC+TGG + chr1.4:73019721-73019740 None:intergenic 35.0%
!! TAGTTGAAAAGGTACCATCT+GGG + chr1.4:73019720-73019739 None:intergenic 35.0%
!!! GAAGGAAACTGTTTTTTGTG+AGG + chr1.4:73019173-73019192 None:intergenic 35.0%
AAAAAAATGACGCCTGCTAG+TGG - chr1.4:73019406-73019425 MS.gene60840:CDS 40.0%
AACAGAGTTGGCAGGAATAT+TGG + chr1.4:73019464-73019483 None:intergenic 40.0%
AATATTCCTGCCAACTCTGT+TGG - chr1.4:73019463-73019482 MS.gene60840:CDS 40.0%
AGTCCTCACAATCCATTTGT+TGG - chr1.4:73019514-73019533 MS.gene60840:CDS 40.0%
GAGTTTGATACTAGTTCCAC+TGG - chr1.4:73019541-73019560 MS.gene60840:CDS 40.0%
GGAAACCTTGGAGTTGTTAA+TGG - chr1.4:73019487-73019506 MS.gene60840:CDS 40.0%
GGAGACCCTAAAAATGTTGT+AGG - chr1.4:73019286-73019305 MS.gene60840:CDS 40.0%
GTCCTCACAATCCATTTGTT+GGG - chr1.4:73019515-73019534 MS.gene60840:CDS 40.0%
GTTTGCAATATTGTTTGGGG+TGG + chr1.4:73019875-73019894 None:intergenic 40.0%
TCAAACTCTACCCCAACAAA+TGG + chr1.4:73019529-73019548 None:intergenic 40.0%
! AAATCCAGTTTTTCCCTGCA+TGG - chr1.4:73019217-73019236 MS.gene60840:CDS 40.0%
! TCCTCACAATCCATTTGTTG+GGG - chr1.4:73019516-73019535 MS.gene60840:CDS 40.0%
! TTGACTTGAAAGACCATGCA+TGG + chr1.4:73019840-73019859 None:intergenic 40.0%
!! ACTGAAGTTGGTAACGTTGA+AGG + chr1.4:73019191-73019210 None:intergenic 40.0%
!! ATACTAGTTCCACTGGTTCA+TGG - chr1.4:73019548-73019567 MS.gene60840:CDS 40.0%
!! TACTAGTTCCACTGGTTCAT+GGG - chr1.4:73019549-73019568 MS.gene60840:CDS 40.0%
!!! ACAACATTTTTAGGGTCTCC+TGG + chr1.4:73019286-73019305 None:intergenic 40.0%
AAACCAATCCTTACGGTGTC+AGG + chr1.4:73019775-73019794 None:intergenic 45.0%
AAATCACGGAACTTCCATGC+AGG + chr1.4:73019234-73019253 None:intergenic 45.0%
AAGGTTTCCACCAACAGAGT+TGG + chr1.4:73019476-73019495 None:intergenic 45.0%
AATCACGGAACTTCCATGCA+GGG + chr1.4:73019233-73019252 None:intergenic 45.0%
AATTACACCACCTCCATGCA+TGG - chr1.4:73019824-73019843 MS.gene60840:CDS 45.0%
ACTTCCATGCAGGGAAAAAC+TGG + chr1.4:73019224-73019243 None:intergenic 45.0%
ACTTGAAAGACCATGCATGG+AGG + chr1.4:73019837-73019856 None:intergenic 45.0%
ATAAAACACCAGTGCCCATC+TGG - chr1.4:73019320-73019339 MS.gene60840:CDS 45.0%
ATGAAGACAAGTCCACTAGC+AGG + chr1.4:73019421-73019440 None:intergenic 45.0%
ATGGAGGTGGTGTAATTGAC+GGG + chr1.4:73019821-73019840 None:intergenic 45.0%
CATGGAGGTGGTGTAATTGA+CGG + chr1.4:73019822-73019841 None:intergenic 45.0%
GATCCCAAACACTCACATGT+TGG - chr1.4:73019571-73019590 MS.gene60840:CDS 45.0%
GTGAAATGGAATAGGGTGAG+TGG - chr1.4:73019628-73019647 MS.gene60840:CDS 45.0%
TAAAACACCAGTGCCCATCT+GGG - chr1.4:73019321-73019340 MS.gene60840:CDS 45.0%
! AACTCTGTTGGTGGAAACCT+TGG - chr1.4:73019475-73019494 MS.gene60840:CDS 45.0%
!! ACCCCAACAAATGGATTGTG+AGG + chr1.4:73019520-73019539 None:intergenic 45.0%
ATTCCTGCCAACTCTGTTGG+TGG - chr1.4:73019466-73019485 MS.gene60840:CDS 50.0%
CCAGTGGTACTATCCCAGAT+GGG + chr1.4:73019337-73019356 None:intergenic 50.0%
CTTCCTGACACCGTAAGGAT+TGG - chr1.4:73019769-73019788 MS.gene60840:CDS 50.0%
TGAAAGACCATGCATGGAGG+TGG + chr1.4:73019834-73019853 None:intergenic 50.0%
TTTCCACCAACAGAGTTGGC+AGG + chr1.4:73019472-73019491 None:intergenic 50.0%
! TTTGGGATCCCATGAACCAG+TGG + chr1.4:73019560-73019579 None:intergenic 50.0%
!! GCAGGAATATTGGCTCGATC+TGG + chr1.4:73019454-73019473 None:intergenic 50.0%
!! GGAATATTGGCTCGATCTGG+TGG + chr1.4:73019451-73019470 None:intergenic 50.0%
!!! TGGGCACTGGTGTTTTATGC+AGG + chr1.4:73019318-73019337 None:intergenic 50.0%
CAGTGCTTCCTGACACCGTA+AGG - chr1.4:73019764-73019783 MS.gene60840:CDS 55.0%
GAAGCTAGCAACGTTGCCAG+TGG + chr1.4:73019353-73019372 None:intergenic 55.0%
GCCAGTGGTACTATCCCAGA+TGG + chr1.4:73019338-73019357 None:intergenic 55.0%
GTACTATCCCAGATGGGCAC+TGG + chr1.4:73019331-73019350 None:intergenic 55.0%
! CCCATCTGGGATAGTACCAC+TGG - chr1.4:73019334-73019353 MS.gene60840:CDS 55.0%
GAATAGGGTGAGTGGCGCCT+TGG - chr1.4:73019636-73019655 MS.gene60840:CDS 60.0%
! TTGACGGGCAGCTGTTGTCG+AGG + chr1.4:73019806-73019825 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 73019079 73019909 73019079 ID=MS.gene60840
chr1.4 mRNA 73019079 73019909 73019079 ID=MS.gene60840.t1;Parent=MS.gene60840
chr1.4 exon 73019079 73019909 73019079 ID=MS.gene60840.t1.exon1;Parent=MS.gene60840.t1
chr1.4 CDS 73019079 73019909 73019079 ID=cds.MS.gene60840.t1;Parent=MS.gene60840.t1
Gene Sequence

>MS.gene60840

ATGGCTTTCTTTCCAACAAATCAAAACCTATTTTCTGTTGTGTTAGTCATTTTCACAACTTCATTTCTCTTGCTAGCAACAGAACTAGTGACCTCACAAAAAACAGTTTCCTTCAACGTTACCAACTTCAGTACTAGTAAATCCAGTTTTTCCCTGCATGGAAGTTCCGTGATTTTATCCAATGGAATCGTGACAATAAACAATCCAGGAGACCCTAAAAATGTTGTAGGTCGAATCCTGCATAAAACACCAGTGCCCATCTGGGATAGTACCACTGGCAACGTTGCTAGCTTCATCACCTCCTTCACATTCAAAGTTGTAGACTACAAAAAAATGACGCCTGCTAGTGGACTTGTCTTCATTCTTACACCACCAGATCGAGCCAATATTCCTGCCAACTCTGTTGGTGGAAACCTTGGAGTTGTTAATGGAAACAGTCCTCACAATCCATTTGTTGGGGTAGAGTTTGATACTAGTTCCACTGGTTCATGGGATCCCAAACACTCACATGTTGGAATTGATGTCAACTCTTTGATTTCTTTAAAGACAGTGAAATGGAATAGGGTGAGTGGCGCCTTGGTGAATGTAAAAATCTCCTATGACAATCTCTCTAAGACATTGAATGTTGTTGTATATTACCCAGATGGTACCTTTTCAACTATTGCTCAAGTCGTTGATTTGAAAGCAGTGCTTCCTGACACCGTAAGGATTGGTTTTTCTGCTGCCTCGACAACAGCTGCCCGTCAATTACACCACCTCCATGCATGGTCTTTCAAGTCAAACTTGGACACAACCACCCCAAACAATATTGCAAACTTTTCAGCCATCTGA
Protein sequence

>MS.gene60840.t1

MAFFPTNQNLFSVVLVIFTTSFLLLATELVTSQKTVSFNVTNFSTSKSSFSLHGSSVILSNGIVTINNPGDPKNVVGRILHKTPVPIWDSTTGNVASFITSFTFKVVDYKKMTPASGLVFILTPPDRANIPANSVGGNLGVVNGNSPHNPFVGVEFDTSSTGSWDPKHSHVGIDVNSLISLKTVKWNRVSGALVNVKISYDNLSKTLNVVVYYPDGTFSTIAQVVDLKAVLPDTVRIGFSAASTTAARQLHHLHAWSFKSNLDTTTPNNIANFSAI