Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056691.t1 | RHN61267.1 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 1.50E-156 | 562.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056691.t1 | O65009 | 39.1 | 248 | 139 | 4 | 209 | 445 | 34 | 280 | 9.9e-45 | 182.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056691.t1 | A0A396IEL3 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 1.1e-156 | 562.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene056691 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene056691 | 0.806626 | 7.51E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene056691 | 0.847824 | 9.06E-60 | -1.69E-46 |
| MS.gene054277 | MS.gene056691 | 0.812128 | 4.96E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene056691 | 0.812125 | 4.96E-51 | -1.69E-46 |
| MS.gene055601 | MS.gene056691 | 0.810903 | 9.15E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene056691 | 0.86157 | 9.35E-64 | -1.69E-46 |
| MS.gene056690 | MS.gene056691 | 0.829662 | 4.54E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene056899 | 0.810615 | 1.06E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene056920 | 0.821256 | 4.45E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene056923 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene056924 | 0.82592 | 3.60E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene060087 | 0.811002 | 8.70E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene063988 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene064493 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene066937 | 0.818391 | 2.01E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene06756 | 0.818111 | 2.32E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene070651 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene056691 | MS.gene071108 | 0.825535 | 4.45E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene09768 | 0.823815 | 1.13E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene20556 | -0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene23869 | 0.833745 | 4.47E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene25652 | 0.814576 | 1.44E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene26289 | 0.841341 | 5.04E-58 | -1.69E-46 |
| MS.gene056691 | MS.gene28548 | 0.815308 | 9.88E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene30518 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene30519 | 0.811989 | 5.31E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene30520 | 0.822785 | 1.97E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene30666 | 0.823129 | 1.64E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene33335 | 0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene35433 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene35690 | 0.815484 | 9.03E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene40846 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene42017 | 0.806417 | 8.31E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene42080 | 0.802176 | 6.35E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene42096 | 0.814023 | 1.90E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene43162 | 0.822678 | 2.08E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene45463 | 0.85411 | 1.53E-61 | -1.69E-46 |
| MS.gene056691 | MS.gene45694 | 0.961871 | 3.30E-120 | -1.69E-46 |
| MS.gene056691 | MS.gene45695 | 0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene46272 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene48169 | 0.85975 | 3.33E-63 | -1.69E-46 |
| MS.gene056691 | MS.gene48573 | -0.801627 | 8.24E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene50068 | 0.84944 | 3.23E-60 | -1.69E-46 |
| MS.gene056691 | MS.gene50069 | 0.961881 | 3.22E-120 | -1.69E-46 |
| MS.gene056691 | MS.gene50787 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene056691 | MS.gene54611 | 0.864561 | 1.11E-64 | -1.69E-46 |
| MS.gene056691 | MS.gene57737 | 0.847708 | 9.75E-60 | -1.69E-46 |
| MS.gene056691 | MS.gene58458 | 0.837511 | 4.98E-57 | -1.69E-46 |
| MS.gene056691 | MS.gene58740 | 0.828702 | 7.76E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene59920 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene60578 | 0.824784 | 6.69E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene60838 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene60840 | 0.807261 | 5.51E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene60841 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene60846 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene056691 | MS.gene60847 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene62885 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene62886 | 0.816522 | 5.29E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene63913 | 0.808744 | 2.66E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene64584 | 0.838766 | 2.37E-57 | -1.69E-46 |
| MS.gene056691 | MS.gene65144 | 0.832928 | 7.14E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene67371 | 0.827693 | 1.36E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene67670 | 0.845107 | 4.99E-59 | -1.69E-46 |
| MS.gene056691 | MS.gene70062 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene70064 | 0.827744 | 1.32E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene71342 | 0.828815 | 7.29E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene71346 | 0.826398 | 2.77E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene71924 | 0.827324 | 1.67E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene71927 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene72924 | 0.812316 | 4.51E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene73993 | 0.804995 | 1.65E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene73995 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene74553 | 0.853448 | 2.37E-61 | -1.69E-46 |
| MS.gene056691 | MS.gene75460 | 0.840178 | 1.02E-57 | -1.69E-46 |
| MS.gene056691 | MS.gene79232 | 0.84904 | 4.17E-60 | -1.69E-46 |
| MS.gene056691 | MS.gene80293 | 0.814084 | 1.84E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene81770 | 0.829523 | 4.91E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene81774 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene83008 | 0.847647 | 1.01E-59 | -1.69E-46 |
| MS.gene056691 | MS.gene83011 | 0.834425 | 3.02E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene83012 | 0.802603 | 5.19E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene83366 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene056691 | MS.gene84143 | 0.82839 | 9.23E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene85276 | 0.809709 | 1.65E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene85750 | 0.861864 | 7.60E-64 | -1.69E-46 |
| MS.gene056691 | MS.gene87043 | 0.815306 | 9.89E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene87222 | 0.82822 | 1.01E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene87346 | 0.804601 | 2.00E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene88971 | 0.806737 | 7.11E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene89773 | 0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene90814 | 0.819609 | 1.06E-52 | -1.69E-46 |
| MS.gene056691 | MS.gene91221 | 0.854994 | 8.50E-62 | -1.69E-46 |
| MS.gene056691 | MS.gene91222 | 0.834586 | 2.75E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene95352 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene95353 | 0.827808 | 1.28E-54 | -1.69E-46 |
| MS.gene056691 | MS.gene97024 | 0.813379 | 2.64E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene97293 | 0.831733 | 1.41E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene97335 | 0.838763 | 2.37E-57 | -1.69E-46 |
| MS.gene056691 | MS.gene99544 | 0.845644 | 3.57E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056691.t1 | MTR_4g069570 | 91.098 | 337 | 24 | 2 | 111 | 447 | 6 | 336 | 0.0 | 628 |
| MS.gene056691.t1 | MTR_4g069550 | 63.071 | 482 | 124 | 11 | 1 | 447 | 1 | 463 | 0.0 | 582 |
| MS.gene056691.t1 | MTR_4g069520 | 62.609 | 460 | 110 | 6 | 41 | 447 | 259 | 709 | 0.0 | 570 |
| MS.gene056691.t1 | MTR_4g069520 | 45.392 | 293 | 55 | 7 | 1 | 197 | 1 | 284 | 3.22e-59 | 206 |
| MS.gene056691.t1 | MTR_4g069520 | 45.852 | 229 | 53 | 5 | 41 | 198 | 165 | 393 | 5.15e-45 | 167 |
| MS.gene056691.t1 | MTR_4g069520 | 62.609 | 460 | 110 | 6 | 41 | 447 | 273 | 723 | 0.0 | 569 |
| MS.gene056691.t1 | MTR_4g069520 | 43.322 | 307 | 55 | 8 | 1 | 197 | 1 | 298 | 1.55e-55 | 196 |
| MS.gene056691.t1 | MTR_4g069520 | 45.852 | 229 | 53 | 5 | 41 | 198 | 179 | 407 | 5.49e-45 | 167 |
| MS.gene056691.t1 | MTR_4g069040 | 58.160 | 337 | 118 | 5 | 118 | 446 | 188 | 509 | 5.87e-135 | 398 |
| MS.gene056691.t1 | MTR_3g116320 | 42.212 | 443 | 203 | 12 | 36 | 447 | 268 | 688 | 5.48e-102 | 319 |
| MS.gene056691.t1 | MTR_3g116270 | 37.891 | 512 | 247 | 18 | 1 | 447 | 1 | 506 | 2.54e-100 | 309 |
| MS.gene056691.t1 | MTR_6g086530 | 71.707 | 205 | 57 | 1 | 243 | 446 | 1 | 205 | 3.17e-98 | 293 |
| MS.gene056691.t1 | MTR_3g116410 | 47.032 | 219 | 111 | 4 | 231 | 446 | 59 | 275 | 1.35e-68 | 220 |
| MS.gene056691.t1 | MTR_3g107830 | 46.575 | 219 | 112 | 4 | 231 | 446 | 39 | 255 | 3.38e-68 | 218 |
| MS.gene056691.t1 | MTR_4g069680 | 45.662 | 219 | 114 | 4 | 231 | 446 | 70 | 286 | 3.98e-66 | 214 |
| MS.gene056691.t1 | MTR_3g116380 | 45.455 | 220 | 114 | 4 | 231 | 447 | 87 | 303 | 1.70e-65 | 213 |
| MS.gene056691.t1 | MTR_4g068420 | 62.590 | 139 | 33 | 1 | 309 | 447 | 2 | 121 | 5.61e-60 | 192 |
| MS.gene056691.t1 | MTR_4g069540 | 90.588 | 85 | 8 | 0 | 210 | 294 | 13 | 97 | 5.17e-47 | 157 |
| MS.gene056691.t1 | MTR_1g008500 | 38.356 | 219 | 125 | 6 | 231 | 445 | 171 | 383 | 3.89e-44 | 159 |
| MS.gene056691.t1 | MTR_1g008510 | 37.156 | 218 | 130 | 5 | 229 | 445 | 113 | 324 | 1.05e-41 | 150 |
| MS.gene056691.t1 | MTR_3g109490 | 40.000 | 220 | 123 | 7 | 231 | 446 | 107 | 321 | 2.19e-41 | 150 |
| MS.gene056691.t1 | MTR_0312s0030 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.35e-41 | 150 |
| MS.gene056691.t1 | MTR_1g007520 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.35e-41 | 150 |
| MS.gene056691.t1 | MTR_1g008590 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 8.84e-41 | 148 |
| MS.gene056691.t1 | MTR_1g008530 | 36.364 | 220 | 125 | 7 | 233 | 445 | 11 | 222 | 2.17e-40 | 144 |
| MS.gene056691.t1 | MTR_1g008470 | 35.023 | 217 | 132 | 5 | 231 | 445 | 89 | 298 | 3.74e-40 | 146 |
| MS.gene056691.t1 | MTR_1g008460 | 35.814 | 215 | 130 | 6 | 231 | 445 | 89 | 295 | 1.20e-39 | 144 |
| MS.gene056691.t1 | MTR_1g008560 | 36.036 | 222 | 131 | 6 | 229 | 445 | 113 | 328 | 2.72e-39 | 144 |
| MS.gene056691.t1 | MTR_1g008450 | 35.545 | 211 | 127 | 6 | 236 | 444 | 107 | 310 | 1.08e-34 | 131 |
| MS.gene056691.t1 | MTR_1g008580 | 35.795 | 176 | 106 | 5 | 271 | 445 | 1 | 170 | 6.13e-33 | 122 |
| MS.gene056691.t1 | MTR_3g078090 | 33.937 | 221 | 130 | 7 | 231 | 444 | 413 | 624 | 2.41e-30 | 124 |
| MS.gene056691.t1 | MTR_5g034320 | 30.769 | 221 | 137 | 6 | 231 | 444 | 415 | 626 | 3.53e-28 | 117 |
| MS.gene056691.t1 | MTR_8g064560 | 30.415 | 217 | 143 | 5 | 231 | 444 | 412 | 623 | 2.32e-26 | 112 |
| MS.gene056691.t1 | MTR_8g064500 | 30.126 | 239 | 151 | 7 | 209 | 444 | 145 | 370 | 1.85e-25 | 107 |
| MS.gene056691.t1 | MTR_8g064530 | 29.032 | 217 | 146 | 5 | 231 | 444 | 429 | 640 | 8.17e-24 | 104 |
| MS.gene056691.t1 | MTR_4g133840 | 32.941 | 170 | 108 | 5 | 277 | 444 | 21 | 186 | 8.85e-23 | 95.9 |
| MS.gene056691.t1 | MTR_5g033350 | 28.191 | 188 | 122 | 4 | 265 | 444 | 16 | 198 | 1.29e-19 | 87.0 |
| MS.gene056691.t1 | MTR_5g033340 | 27.111 | 225 | 146 | 6 | 228 | 444 | 163 | 377 | 6.08e-19 | 88.6 |
| MS.gene056691.t1 | MTR_5g033340 | 28.859 | 149 | 102 | 2 | 276 | 424 | 6 | 150 | 5.15e-16 | 79.7 |
| MS.gene056691.t1 | MTR_5g033330 | 27.317 | 205 | 132 | 5 | 228 | 424 | 194 | 389 | 3.43e-17 | 84.3 |
| MS.gene056691.t1 | MTR_5g033330 | 27.976 | 168 | 109 | 3 | 265 | 424 | 18 | 181 | 4.37e-16 | 80.9 |
| MS.gene056691.t1 | MTR_5g033330 | 26.222 | 225 | 148 | 6 | 228 | 444 | 402 | 616 | 5.22e-16 | 80.9 |
| MS.gene056691.t1 | MTR_2g081770 | 30.962 | 239 | 133 | 12 | 211 | 446 | 61 | 270 | 3.65e-17 | 81.6 |
| MS.gene056691.t1 | MTR_8g046000 | 36.364 | 154 | 84 | 6 | 295 | 447 | 83 | 223 | 4.21e-17 | 80.9 |
| MS.gene056691.t1 | MTR_8g445140 | 34.667 | 150 | 86 | 7 | 297 | 446 | 165 | 302 | 2.13e-16 | 80.1 |
| MS.gene056691.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 294 | 431 | 3.98e-16 | 80.5 |
| MS.gene056691.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 335 | 472 | 4.34e-16 | 80.9 |
| MS.gene056691.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 372 | 509 | 4.63e-16 | 80.9 |
| MS.gene056691.t1 | MTR_8g445170 | 32.500 | 160 | 96 | 7 | 287 | 446 | 236 | 383 | 8.25e-16 | 79.3 |
| MS.gene056691.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 177 | 314 | 1.75e-14 | 74.7 |
| MS.gene056691.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 212 | 349 | 2.41e-14 | 74.7 |
| MS.gene056691.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 214 | 351 | 2.61e-14 | 74.3 |
| MS.gene056691.t1 | MTR_2g081610 | 33.566 | 143 | 83 | 6 | 304 | 446 | 129 | 259 | 1.33e-13 | 71.2 |
| MS.gene056691.t1 | MTR_2g081590 | 27.386 | 241 | 140 | 12 | 208 | 446 | 52 | 259 | 1.12e-12 | 68.6 |
| MS.gene056691.t1 | MTR_8g075930 | 40.278 | 72 | 41 | 2 | 358 | 428 | 11 | 81 | 8.83e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056691.t1 | AT1G49320 | 37.387 | 222 | 131 | 3 | 231 | 445 | 58 | 278 | 1.02e-52 | 179 |
| MS.gene056691.t1 | AT5G25610 | 37.104 | 221 | 127 | 7 | 231 | 445 | 176 | 390 | 1.61e-42 | 155 |
| MS.gene056691.t1 | AT1G60390 | 31.959 | 194 | 120 | 6 | 255 | 444 | 435 | 620 | 1.61e-25 | 110 |
| MS.gene056691.t1 | AT1G70370 | 26.667 | 420 | 262 | 18 | 48 | 444 | 226 | 622 | 1.00e-24 | 107 |
| MS.gene056691.t1 | AT1G70370 | 26.667 | 420 | 262 | 18 | 48 | 444 | 226 | 622 | 1.00e-24 | 107 |
| MS.gene056691.t1 | AT1G23760 | 29.319 | 191 | 129 | 4 | 255 | 444 | 433 | 618 | 1.16e-22 | 101 |
Find 133 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGCTCCGTTGGATTTA+TGG | 0.143157 | 4.3:-35785178 | None:intergenic |
| TTTGATCTCCGTTGGATTTA+TGG | 0.163493 | 4.3:-35784911 | None:intergenic |
| GAATTTGTTGACACAATTAT+TGG | 0.204523 | 4.3:+35785614 | MS.gene056691:CDS |
| ATTCAGACAACTTGGGATTA+AGG | 0.231832 | 4.3:+35785919 | MS.gene056691:CDS |
| GTATGATCCAAGTTAGAAAT+TGG | 0.234762 | 4.3:-35785311 | None:intergenic |
| CTCCGTTGGATTTATGGTTA+TGG | 0.234942 | 4.3:-35784905 | None:intergenic |
| TTGTACCCAGTAATGTAATT+TGG | 0.253989 | 4.3:-35785233 | None:intergenic |
| CTATACCCGGTAATGTAATT+TGG | 0.262932 | 4.3:-35784879 | None:intergenic |
| CTATACCCGGTAATGTAATT+TGG | 0.262932 | 4.3:-35785146 | None:intergenic |
| TCCGTTGGATTTATGGTTAT+GGG | 0.267348 | 4.3:-35784904 | None:intergenic |
| TTCATTTGATTCTGGTTGTT+TGG | 0.269582 | 4.3:-35784982 | None:intergenic |
| AAACTTCTTGGACCGGAAAT+TGG | 0.272020 | 4.3:-35785397 | None:intergenic |
| TGTAATGACCCTCCAATTTC+CGG | 0.278512 | 4.3:+35785385 | MS.gene056691:CDS |
| TGATGAGAATGGAGATAAAA+TGG | 0.280906 | 4.3:+35785841 | MS.gene056691:CDS |
| CTCCGTTGGATTTATGGTTA+TGG | 0.282351 | 4.3:-35785172 | None:intergenic |
| ATGTAAGGTTCATTTGATTC+TGG | 0.296295 | 4.3:-35784990 | None:intergenic |
| ATGTAAGGTTCATTCGATTC+TGG | 0.299569 | 4.3:-35784825 | None:intergenic |
| TAGTAAATGGCATATGGATA+TGG | 0.303048 | 4.3:-35785767 | None:intergenic |
| TGTCTGAATATAATATGATT+AGG | 0.304357 | 4.3:-35785905 | None:intergenic |
| AGTTCTAGGTGAGGGGTTGC+TGG | 0.311022 | 4.3:-35785666 | None:intergenic |
| AAGTGCTCCTCTCATGGATT+TGG | 0.314509 | 4.3:-35785522 | None:intergenic |
| CAAAATCAAGTGGATTTAAA+TGG | 0.315181 | 4.3:+35784765 | MS.gene056691:CDS |
| TCCGTTGGATTTATGGTTAT+GGG | 0.315611 | 4.3:-35785171 | None:intergenic |
| GAACCTTACATAACTGGATA+TGG | 0.323449 | 4.3:+35785002 | MS.gene056691:CDS |
| GAACCTTACATAACTGGATA+TGG | 0.326403 | 4.3:+35784837 | MS.gene056691:CDS |
| GGTAATGTAATTTGATTGTT+TGG | 0.326516 | 4.3:-35785036 | None:intergenic |
| CAATATCGTATAACTCAATA+TGG | 0.334238 | 4.3:+35785104 | MS.gene056691:CDS |
| TTCATTCGATTCTGGTTGTT+TGG | 0.335521 | 4.3:-35784817 | None:intergenic |
| CTTGAACACTTTAGTCTTTG+TGG | 0.337552 | 4.3:-35785804 | None:intergenic |
| TCCATTCAGATGTATCAAAA+TGG | 0.341451 | 4.3:-35785880 | None:intergenic |
| TCAAATGAACCTTACATAAC+TGG | 0.344743 | 4.3:+35784996 | MS.gene056691:CDS |
| TGCGAAGGGGAAACCGTTAC+AGG | 0.345500 | 4.3:+35785551 | MS.gene056691:CDS |
| AGAGGTAAGGAGAAACTTCT+TGG | 0.347982 | 4.3:-35785409 | None:intergenic |
| AAGCAACCAAATTACATTAC+TGG | 0.350332 | 4.3:+35785227 | MS.gene056691:CDS |
| TGTAAGGACCATTGGATTCA+TGG | 0.352428 | 4.3:-35785076 | None:intergenic |
| GGTAATGTAATTTGGTTGTT+TGG | 0.352526 | 4.3:-35784871 | None:intergenic |
| TTGGCTTGAGGAGATCCTTC+AGG | 0.355790 | 4.3:-35785503 | None:intergenic |
| TCGAATGAACCTTACATAAC+TGG | 0.367241 | 4.3:+35784831 | MS.gene056691:CDS |
| TCTTCTACGGAGTTGGTAGA+TGG | 0.379268 | 4.3:-35785284 | None:intergenic |
| GTCTGAATATAATATGATTA+GGG | 0.381294 | 4.3:-35785904 | None:intergenic |
| AAACAATCAAATTACATTAC+CGG | 0.386224 | 4.3:+35785038 | MS.gene056691:CDS |
| AATGTAATGGCAATAGTAAA+TGG | 0.389637 | 4.3:-35785780 | None:intergenic |
| AAACAACCAAATTACATTAC+CGG | 0.395982 | 4.3:+35784873 | MS.gene056691:CDS |
| CACAAAGACTAAAGTGTTCA+AGG | 0.405308 | 4.3:+35785805 | MS.gene056691:CDS |
| GAAAAGAGTTGAAGAATACT+TGG | 0.405738 | 4.3:-35785476 | None:intergenic |
| GGATGACAAGCTACCCATTT+GGG | 0.407784 | 4.3:-35785740 | None:intergenic |
| CATATTATATTCAGACAACT+TGG | 0.410545 | 4.3:+35785911 | MS.gene056691:CDS |
| AAGCAACCAAATTACATTAC+CGG | 0.411660 | 4.3:+35785140 | MS.gene056691:CDS |
| AGATCTCCCAATTTCTAACT+TGG | 0.414347 | 4.3:+35785304 | MS.gene056691:CDS |
| CAAGACAGGATATTTCAGTT+TGG | 0.426765 | 4.3:+35785343 | MS.gene056691:CDS |
| GGTAATGTAATTTGGTTGCT+TGG | 0.427770 | 4.3:-35785138 | None:intergenic |
| CTCTTCAAGTGCTCCTCTCA+TGG | 0.434563 | 4.3:-35785528 | None:intergenic |
| CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.3:+35784880 | MS.gene056691:CDS |
| CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.3:+35785147 | MS.gene056691:CDS |
| TTGAGTTATGTAAGGACCAT+TGG | 0.436047 | 4.3:-35785084 | None:intergenic |
| ATGATATTGATGTTCCCAAA+TGG | 0.438419 | 4.3:+35785726 | MS.gene056691:CDS |
| TTACCATATCCAGTTATGTA+AGG | 0.446290 | 4.3:-35784840 | None:intergenic |
| TTACCATATCCAGTTATGTA+AGG | 0.446290 | 4.3:-35785005 | None:intergenic |
| CCTCTCATGGATTTGGCTTG+AGG | 0.446591 | 4.3:-35785515 | None:intergenic |
| GGGATGACAAGCTACCCATT+TGG | 0.447559 | 4.3:-35785741 | None:intergenic |
| TCCCTGTGAACCATCTTATG+TGG | 0.449193 | 4.3:+35785972 | MS.gene056691:CDS |
| GAGCATGGACTCTAGAGAAT+TGG | 0.449401 | 4.3:-35785591 | None:intergenic |
| TAGTCTTTGTGGCAATGTAA+TGG | 0.454439 | 4.3:-35785793 | None:intergenic |
| TGGCAATAGTAAATGGCATA+TGG | 0.457847 | 4.3:-35785773 | None:intergenic |
| GGAGATAAAATGGAAGCTCT+TGG | 0.462321 | 4.3:+35785851 | MS.gene056691:CDS |
| AGACAACTTGGGATTAAGGC+TGG | 0.463334 | 4.3:+35785923 | MS.gene056691:CDS |
| ATACGATATTGAGTTATGTA+AGG | 0.463612 | 4.3:-35785092 | None:intergenic |
| TATGATCCAAGTTAGAAATT+GGG | 0.467513 | 4.3:-35785310 | None:intergenic |
| TGGCTTGAGGAGATCCTTCA+GGG | 0.473228 | 4.3:-35785502 | None:intergenic |
| TGAAGTTATGTAAGCTCCGT+TGG | 0.478150 | 4.3:-35785186 | None:intergenic |
| ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.3:-35784790 | None:intergenic |
| ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.3:-35784955 | None:intergenic |
| CAAAATCAAGTGGATTCAAA+TGG | 0.483359 | 4.3:+35784930 | MS.gene056691:CDS |
| TGATATTGATGTTCCCAAAT+GGG | 0.483777 | 4.3:+35785727 | MS.gene056691:CDS |
| TGGGAGATCTTCTACGGAGT+TGG | 0.486029 | 4.3:-35785291 | None:intergenic |
| TATGATGTCATTGATCCAAA+AGG | 0.494967 | 4.3:+35785257 | MS.gene056691:CDS |
| CTTCTACGGAGTTGGTAGAT+GGG | 0.498054 | 4.3:-35785283 | None:intergenic |
| AGTAAATGGCATATGGATAT+GGG | 0.502163 | 4.3:-35785766 | None:intergenic |
| TGGCTTTGGGATGGCTACAT+TGG | 0.503222 | 4.3:-35785998 | None:intergenic |
| GAGTTACCATAAAGAAGAAA+AGG | 0.507028 | 4.3:-35783975 | None:intergenic |
| ATCATGTGATACTTCTAAAA+CGG | 0.508731 | 4.3:-35785708 | None:intergenic |
| AGAGGGATAGTTCTAGGTGA+GGG | 0.508920 | 4.3:-35785674 | None:intergenic |
| GAGCACTTGAAGAGTGCGAA+GGG | 0.516914 | 4.3:+35785537 | MS.gene056691:CDS |
| CTTCTTGGACCGGAAATTGG+AGG | 0.517939 | 4.3:-35785394 | None:intergenic |
| ACCATTGGATTCATGGCTAC+GGG | 0.518349 | 4.3:-35785069 | None:intergenic |
| TTCTACGGAGTTGGTAGATG+GGG | 0.526558 | 4.3:-35785282 | None:intergenic |
| AGAAATTGGGAGATCTTCTA+CGG | 0.530034 | 4.3:-35785297 | None:intergenic |
| GGTCTTTGTCTCCCCTGTAA+CGG | 0.530396 | 4.3:-35785564 | None:intergenic |
| GGGAGTTGTGACATCGAGAA+AGG | 0.530459 | 4.3:-35785455 | None:intergenic |
| CATACAGAAGCTTTCAAGAC+AGG | 0.532423 | 4.3:+35785329 | MS.gene056691:CDS |
| AACAACCAAATTACATTACC+GGG | 0.532937 | 4.3:+35784874 | MS.gene056691:CDS |
| AGCAACCAAATTACATTACT+GGG | 0.535052 | 4.3:+35785228 | MS.gene056691:CDS |
| GACCATTGGATTCATGGCTA+CGG | 0.535382 | 4.3:-35785070 | None:intergenic |
| AAAAGAGTTGAAGAATACTT+GGG | 0.539336 | 4.3:-35785475 | None:intergenic |
| GACAACTTGGGATTAAGGCT+GGG | 0.540548 | 4.3:+35785924 | MS.gene056691:CDS |
| ACATTGGAATCCACATAAGA+TGG | 0.540746 | 4.3:-35785982 | None:intergenic |
| AACAATCAAATTACATTACC+GGG | 0.544310 | 4.3:+35785039 | MS.gene056691:CDS |
| ACATCATTGTAGATTGGCAG+AGG | 0.551845 | 4.3:+35784705 | MS.gene056691:intron |
| ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.3:-35784892 | None:intergenic |
| ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.3:-35785159 | None:intergenic |
| TCACTTGTTAGTGATGAGAA+TGG | 0.555520 | 4.3:+35785830 | MS.gene056691:CDS |
| TAAGGAGAAACTTCTTGGAC+CGG | 0.557579 | 4.3:-35785404 | None:intergenic |
| ATCCACATAAGATGGTTCAC+AGG | 0.559204 | 4.3:-35785974 | None:intergenic |
| ATATTATATTCAGACAACTT+GGG | 0.559590 | 4.3:+35785912 | MS.gene056691:CDS |
| TCTAGGTGAGGGGTTGCTGG+TGG | 0.565202 | 4.3:-35785663 | None:intergenic |
| ACTTCATATGATAAACATGA+AGG | 0.566668 | 4.3:+35785203 | MS.gene056691:CDS |
| TCTACGGAGTTGGTAGATGG+GGG | 0.569022 | 4.3:-35785281 | None:intergenic |
| TTCTTGGACCGGAAATTGGA+GGG | 0.569528 | 4.3:-35785393 | None:intergenic |
| AGTTTGGATGATCTTCACGT+TGG | 0.576107 | 4.3:+35785359 | MS.gene056691:CDS |
| TAGAGGGATAGTTCTAGGTG+AGG | 0.581869 | 4.3:-35785675 | None:intergenic |
| TTGTGACATCGAGAAAGGAA+TGG | 0.584970 | 4.3:-35785450 | None:intergenic |
| GCTGCGAGATCAAAATCAAG+TGG | 0.587722 | 4.3:+35784755 | MS.gene056691:CDS |
| GCGAAGGGGAAACCGTTACA+GGG | 0.589433 | 4.3:+35785552 | MS.gene056691:CDS |
| GGAGCACTTGAAGAGTGCGA+AGG | 0.589477 | 4.3:+35785536 | MS.gene056691:CDS |
| CAACGGAGATCAAAATCAAG+TGG | 0.591165 | 4.3:+35784920 | MS.gene056691:CDS |
| AAATGGCATATGGATATGGG+AGG | 0.595703 | 4.3:-35785763 | None:intergenic |
| AGCAACCAAATTACATTACC+GGG | 0.602138 | 4.3:+35785141 | MS.gene056691:CDS |
| ATGGCATATGGATATGGGAG+GGG | 0.608580 | 4.3:-35785761 | None:intergenic |
| TGTGTCAACAAATTCGAGCA+TGG | 0.613242 | 4.3:-35785606 | None:intergenic |
| GAGGGATAGTTCTAGGTGAG+GGG | 0.618840 | 4.3:-35785673 | None:intergenic |
| ACCCGTAGCCATGAATCCAA+TGG | 0.627080 | 4.3:+35785068 | MS.gene056691:CDS |
| ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.3:+35784903 | MS.gene056691:CDS |
| ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.3:+35785170 | MS.gene056691:CDS |
| GGACTCTAGAGAATTGGCAC+AGG | 0.635769 | 4.3:-35785585 | None:intergenic |
| CATCGAGAAAGGAATGGAGT+CGG | 0.647174 | 4.3:-35785444 | None:intergenic |
| CCTCAAGCCAAATCCATGAG+AGG | 0.648458 | 4.3:+35785515 | MS.gene056691:CDS |
| ATGGCTACGGGTCTTATACC+CGG | 0.654290 | 4.3:-35785057 | None:intergenic |
| TCCACATAAGATGGTTCACA+GGG | 0.658935 | 4.3:-35785973 | None:intergenic |
| CGAAGGGGAAACCGTTACAG+GGG | 0.669441 | 4.3:+35785553 | MS.gene056691:CDS |
| CTACGGAGTTGGTAGATGGG+GGG | 0.677778 | 4.3:-35785280 | None:intergenic |
| AGCACTTGAAGAGTGCGAAG+GGG | 0.678572 | 4.3:+35785538 | MS.gene056691:CDS |
| ACAGGGAAGAAATGACACAC+TGG | 0.683295 | 4.3:-35785956 | None:intergenic |
| AATGGCATATGGATATGGGA+GGG | 0.696886 | 4.3:-35785762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr4.3:35784379-35784360 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr4.3:35784378-35784359 | None:intergenic | 0.0% |
| !! | ACCTTAAAAAAAATTAAAAG+TGG | - | chr4.3:35784303-35784322 | None:intergenic | 15.0% |
| !!! | TCCACTTTTAATTTTTTTTA+AGG | + | chr4.3:35784299-35784318 | MS.gene056691:intron | 15.0% |
| !!! | TTTCAATTAATTTTTCTTTG+AGG | + | chr4.3:35784481-35784500 | MS.gene056691:intron | 15.0% |
| !! | AAACAATCAAATTACATTAC+CGG | + | chr4.3:35785038-35785057 | MS.gene056691:CDS | 20.0% |
| !! | ATATTATATTCAGACAACTT+GGG | + | chr4.3:35785912-35785931 | MS.gene056691:CDS | 20.0% |
| !! | GTCTGAATATAATATGATTA+GGG | - | chr4.3:35785907-35785926 | None:intergenic | 20.0% |
| !! | TAGTAATAGTGATATCAATT+TGG | + | chr4.3:35784581-35784600 | MS.gene056691:intron | 20.0% |
| !! | TGTCTGAATATAATATGATT+AGG | - | chr4.3:35785908-35785927 | None:intergenic | 20.0% |
| !!! | AGGACATGATATTTTTTTTT+TGG | + | chr4.3:35784253-35784272 | MS.gene056691:intron | 20.0% |
| !!! | TTTTTTAAGGTGAATAAGTA+GGG | + | chr4.3:35784312-35784331 | MS.gene056691:intron | 20.0% |
| !!! | TTTTTTTAAGGTGAATAAGT+AGG | + | chr4.3:35784311-35784330 | MS.gene056691:intron | 20.0% |
| ! | AAAAGAGTTGAAGAATACTT+GGG | - | chr4.3:35785478-35785497 | None:intergenic | 25.0% |
| ! | AAACAACCAAATTACATTAC+CGG | + | chr4.3:35784873-35784892 | MS.gene056691:CDS | 25.0% |
| ! | AACAATCAAATTACATTACC+GGG | + | chr4.3:35785039-35785058 | MS.gene056691:CDS | 25.0% |
| ! | AATGTAATGGCAATAGTAAA+TGG | - | chr4.3:35785783-35785802 | None:intergenic | 25.0% |
| ! | ACTTCATATGATAAACATGA+AGG | + | chr4.3:35785203-35785222 | MS.gene056691:CDS | 25.0% |
| ! | ATACGATATTGAGTTATGTA+AGG | - | chr4.3:35785095-35785114 | None:intergenic | 25.0% |
| ! | ATCAATTTGGCTAATCAATT+GGG | + | chr4.3:35784594-35784613 | MS.gene056691:intron | 25.0% |
| ! | ATGATTATAAGCAGTTATGT+AGG | - | chr4.3:35784793-35784812 | None:intergenic | 25.0% |
| ! | CAATATCGTATAACTCAATA+TGG | + | chr4.3:35785104-35785123 | MS.gene056691:CDS | 25.0% |
| ! | CATATTATATTCAGACAACT+TGG | + | chr4.3:35785911-35785930 | MS.gene056691:CDS | 25.0% |
| ! | GGTAATGTAATTTGATTGTT+TGG | - | chr4.3:35785039-35785058 | None:intergenic | 25.0% |
| ! | TATCAATTTGGCTAATCAAT+TGG | + | chr4.3:35784593-35784612 | MS.gene056691:intron | 25.0% |
| ! | TATGATCCAAGTTAGAAATT+GGG | - | chr4.3:35785313-35785332 | None:intergenic | 25.0% |
| ! | TTTATGGTAACTCAGTTATA+GGG | + | chr4.3:35783985-35784004 | MS.gene056691:intron | 25.0% |
| !! | ATCATGTGATACTTCTAAAA+CGG | - | chr4.3:35785711-35785730 | None:intergenic | 25.0% |
| !! | ATTTGGTTCAAATATCACAA+AGG | + | chr4.3:35784033-35784052 | MS.gene056691:intron | 25.0% |
| !! | CAAAATCAAGTGGATTTAAA+TGG | + | chr4.3:35784765-35784784 | MS.gene056691:CDS | 25.0% |
| !! | TTTAGTCCTTTTCTTCTTTA+TGG | + | chr4.3:35783969-35783988 | MS.gene056691:CDS | 25.0% |
| !! | TTTGGTTCAAATATCACAAA+GGG | + | chr4.3:35784034-35784053 | MS.gene056691:intron | 25.0% |
| !!! | ACTATTGTTTTATCAACACT+TGG | + | chr4.3:35784214-35784233 | MS.gene056691:intron | 25.0% |
| !!! | GAATTTGTTGACACAATTAT+TGG | + | chr4.3:35785614-35785633 | MS.gene056691:CDS | 25.0% |
| AACAACCAAATTACATTACC+GGG | + | chr4.3:35784874-35784893 | MS.gene056691:CDS | 30.0% | |
| AAGCAACCAAATTACATTAC+CGG | + | chr4.3:35785140-35785159 | MS.gene056691:CDS | 30.0% | |
| AAGCAACCAAATTACATTAC+TGG | + | chr4.3:35785140-35785159 | MS.gene056691:CDS | 30.0% | |
| AGCAACCAAATTACATTACT+GGG | + | chr4.3:35785228-35785247 | MS.gene056691:CDS | 30.0% | |
| AGTAAATGGCATATGGATAT+GGG | - | chr4.3:35785769-35785788 | None:intergenic | 30.0% | |
| ATGATATTGATGTTCCCAAA+TGG | + | chr4.3:35785726-35785745 | MS.gene056691:CDS | 30.0% | |
| ATGTAAGGTTCATTTGATTC+TGG | - | chr4.3:35784993-35785012 | None:intergenic | 30.0% | |
| CTTTATGGTAACTCAGTTAT+AGG | + | chr4.3:35783984-35784003 | MS.gene056691:intron | 30.0% | |
| GAAAAGAGTTGAAGAATACT+TGG | - | chr4.3:35785479-35785498 | None:intergenic | 30.0% | |
| GAGTTACCATAAAGAAGAAA+AGG | - | chr4.3:35783978-35783997 | None:intergenic | 30.0% | |
| GGTAATGTAATTTGGTTGTT+TGG | - | chr4.3:35784874-35784893 | None:intergenic | 30.0% | |
| GTATGATCCAAGTTAGAAAT+TGG | - | chr4.3:35785314-35785333 | None:intergenic | 30.0% | |
| TAGTAAATGGCATATGGATA+TGG | - | chr4.3:35785770-35785789 | None:intergenic | 30.0% | |
| TATGAAATATTCATACCGAC+AGG | + | chr4.3:35784404-35784423 | MS.gene056691:intron | 30.0% | |
| TATGATGTCATTGATCCAAA+AGG | + | chr4.3:35785257-35785276 | MS.gene056691:CDS | 30.0% | |
| TCAAATGAACCTTACATAAC+TGG | + | chr4.3:35784996-35785015 | MS.gene056691:CDS | 30.0% | |
| TCATTGACATCATTGTAGAT+TGG | + | chr4.3:35784699-35784718 | MS.gene056691:intron | 30.0% | |
| TCCATTCAGATGTATCAAAA+TGG | - | chr4.3:35785883-35785902 | None:intergenic | 30.0% | |
| TCTAAATTCACAAGGACATA+CGG | + | chr4.3:35784427-35784446 | MS.gene056691:intron | 30.0% | |
| TGATATTGATGTTCCCAAAT+GGG | + | chr4.3:35785727-35785746 | MS.gene056691:CDS | 30.0% | |
| TGATGAGAATGGAGATAAAA+TGG | + | chr4.3:35785841-35785860 | MS.gene056691:CDS | 30.0% | |
| TTAATTGCAAGGACTTTCAA+GGG | - | chr4.3:35784548-35784567 | None:intergenic | 30.0% | |
| TTACCATATCCAGTTATGTA+AGG | - | chr4.3:35784843-35784862 | None:intergenic | 30.0% | |
| TTGTACCCAGTAATGTAATT+TGG | - | chr4.3:35785236-35785255 | None:intergenic | 30.0% | |
| TTTAATTGCAAGGACTTTCA+AGG | - | chr4.3:35784549-35784568 | None:intergenic | 30.0% | |
| ! | CAAAATCAAGTGGATTCAAA+TGG | + | chr4.3:35784930-35784949 | MS.gene056691:CDS | 30.0% |
| ! | TTCATTTGATTCTGGTTGTT+TGG | - | chr4.3:35784985-35785004 | None:intergenic | 30.0% |
| ! | TTTAGAACCTAGAGCTTTAT+GGG | - | chr4.3:35784516-35784535 | None:intergenic | 30.0% |
| !!! | TACATCACGTTTTAATTGCA+AGG | - | chr4.3:35784559-35784578 | None:intergenic | 30.0% |
| ACATTGGAATCCACATAAGA+TGG | - | chr4.3:35785985-35786004 | None:intergenic | 35.0% | |
| ACCCATAACCATAAATCCAA+CGG | + | chr4.3:35784903-35784922 | MS.gene056691:CDS | 35.0% | |
| AGAAATTGGGAGATCTTCTA+CGG | - | chr4.3:35785300-35785319 | None:intergenic | 35.0% | |
| AGATCTCCCAATTTCTAACT+TGG | + | chr4.3:35785304-35785323 | MS.gene056691:CDS | 35.0% | |
| AGCAACCAAATTACATTACC+GGG | + | chr4.3:35785141-35785160 | MS.gene056691:CDS | 35.0% | |
| ATGTAAGGTTCATTCGATTC+TGG | - | chr4.3:35784828-35784847 | None:intergenic | 35.0% | |
| ATTCAGACAACTTGGGATTA+AGG | + | chr4.3:35785919-35785938 | MS.gene056691:CDS | 35.0% | |
| CAAATTACATTACCGGGTAT+AGG | + | chr4.3:35784880-35784899 | MS.gene056691:CDS | 35.0% | |
| CAAGACAGGATATTTCAGTT+TGG | + | chr4.3:35785343-35785362 | MS.gene056691:CDS | 35.0% | |
| CTATACCCGGTAATGTAATT+TGG | - | chr4.3:35784882-35784901 | None:intergenic | 35.0% | |
| GAACCTTACATAACTGGATA+TGG | + | chr4.3:35784837-35784856 | MS.gene056691:CDS | 35.0% | |
| GGTAATGTAATTTGGTTGCT+TGG | - | chr4.3:35785141-35785160 | None:intergenic | 35.0% | |
| GTTCAAATATCACAAAGGGA+GGG | + | chr4.3:35784038-35784057 | MS.gene056691:intron | 35.0% | |
| TAATTGCAAGGACTTTCAAG+GGG | - | chr4.3:35784547-35784566 | None:intergenic | 35.0% | |
| TAGTCTTTGTGGCAATGTAA+TGG | - | chr4.3:35785796-35785815 | None:intergenic | 35.0% | |
| TCATGTCCTACAAAACTCTA+CGG | - | chr4.3:35784242-35784261 | None:intergenic | 35.0% | |
| TCCGTTGGATTTATGGTTAT+GGG | - | chr4.3:35784907-35784926 | None:intergenic | 35.0% | |
| TCCTTACCTCTCAAAAAAAG+AGG | + | chr4.3:35785421-35785440 | MS.gene056691:CDS | 35.0% | |
| TCGAATGAACCTTACATAAC+TGG | + | chr4.3:35784831-35784850 | MS.gene056691:CDS | 35.0% | |
| TGGCAATAGTAAATGGCATA+TGG | - | chr4.3:35785776-35785795 | None:intergenic | 35.0% | |
| TTGAGTTATGTAAGGACCAT+TGG | - | chr4.3:35785087-35785106 | None:intergenic | 35.0% | |
| TTTGATCTCCGTTGGATTTA+TGG | - | chr4.3:35784914-35784933 | None:intergenic | 35.0% | |
| ! | CACAAAGACTAAAGTGTTCA+AGG | + | chr4.3:35785805-35785824 | MS.gene056691:CDS | 35.0% |
| ! | CTTGAACACTTTAGTCTTTG+TGG | - | chr4.3:35785807-35785826 | None:intergenic | 35.0% |
| ! | TCACTTGTTAGTGATGAGAA+TGG | + | chr4.3:35785830-35785849 | MS.gene056691:CDS | 35.0% |
| ! | TTCATTCGATTCTGGTTGTT+TGG | - | chr4.3:35784820-35784839 | None:intergenic | 35.0% |
| ! | TTTTGTAGAGGGATAGTTCT+AGG | - | chr4.3:35785683-35785702 | None:intergenic | 35.0% |
| !! | CTTTAGAACCTAGAGCTTTA+TGG | - | chr4.3:35784517-35784536 | None:intergenic | 35.0% |
| !! | GCCATTTTGATACATCTGAA+TGG | + | chr4.3:35785879-35785898 | MS.gene056691:CDS | 35.0% |
| !!! | AAAACGGTGTAGTTTTGTAG+AGG | - | chr4.3:35785695-35785714 | None:intergenic | 35.0% |
| !!! | AAACGGTGTAGTTTTGTAGA+GGG | - | chr4.3:35785694-35785713 | None:intergenic | 35.0% |
| AAACTTCTTGGACCGGAAAT+TGG | - | chr4.3:35785400-35785419 | None:intergenic | 40.0% | |
| AAATGGCATATGGATATGGG+AGG | - | chr4.3:35785766-35785785 | None:intergenic | 40.0% | |
| AATGGCATATGGATATGGGA+GGG | - | chr4.3:35785765-35785784 | None:intergenic | 40.0% | |
| ACATCATTGTAGATTGGCAG+AGG | + | chr4.3:35784705-35784724 | MS.gene056691:intron | 40.0% | |
| AGAGGTAAGGAGAAACTTCT+TGG | - | chr4.3:35785412-35785431 | None:intergenic | 40.0% | |
| AGTTTGGATGATCTTCACGT+TGG | + | chr4.3:35785359-35785378 | MS.gene056691:CDS | 40.0% | |
| ATCCACATAAGATGGTTCAC+AGG | - | chr4.3:35785977-35785996 | None:intergenic | 40.0% | |
| ATTTGGAGGGGGAAATGATA+TGG | + | chr4.3:35784110-35784129 | MS.gene056691:intron | 40.0% | |
| CAACGGAGATCAAAATCAAG+TGG | + | chr4.3:35784920-35784939 | MS.gene056691:CDS | 40.0% | |
| CATACAGAAGCTTTCAAGAC+AGG | + | chr4.3:35785329-35785348 | MS.gene056691:CDS | 40.0% | |
| CCAATATCCCATAAAGCTCT+AGG | + | chr4.3:35784506-35784525 | MS.gene056691:intron | 40.0% | |
| CCTTGTGAATTTAGACCTGT+CGG | - | chr4.3:35784422-35784441 | None:intergenic | 40.0% | |
| CTCCGTTGGATTTATGGTTA+TGG | - | chr4.3:35784908-35784927 | None:intergenic | 40.0% | |
| GGAGATAAAATGGAAGCTCT+TGG | + | chr4.3:35785851-35785870 | MS.gene056691:CDS | 40.0% | |
| GGTTCAAATATCACAAAGGG+AGG | + | chr4.3:35784037-35784056 | MS.gene056691:intron | 40.0% | |
| TAAGGAGAAACTTCTTGGAC+CGG | - | chr4.3:35785407-35785426 | None:intergenic | 40.0% | |
| TCCAAATATCCATCAACTGG+AGG | - | chr4.3:35784097-35784116 | None:intergenic | 40.0% | |
| TCCACATAAGATGGTTCACA+GGG | - | chr4.3:35785976-35785995 | None:intergenic | 40.0% | |
| TGAAGTTATGTAAGCTCCGT+TGG | - | chr4.3:35785189-35785208 | None:intergenic | 40.0% | |
| TGTAAGCTCCGTTGGATTTA+TGG | - | chr4.3:35785181-35785200 | None:intergenic | 40.0% | |
| TGTAAGGACCATTGGATTCA+TGG | - | chr4.3:35785079-35785098 | None:intergenic | 40.0% | |
| TGTAATGACCCTCCAATTTC+CGG | + | chr4.3:35785385-35785404 | MS.gene056691:CDS | 40.0% | |
| TGTGTCAACAAATTCGAGCA+TGG | - | chr4.3:35785609-35785628 | None:intergenic | 40.0% | |
| TTGTGACATCGAGAAAGGAA+TGG | - | chr4.3:35785453-35785472 | None:intergenic | 40.0% | |
| ! | CAACTCTTTTCAATCCCTGA+AGG | + | chr4.3:35785488-35785507 | MS.gene056691:CDS | 40.0% |
| ! | CCTAGAGCTTTATGGGATAT+TGG | - | chr4.3:35784509-35784528 | None:intergenic | 40.0% |
| !! | AGTTGATGGATATTTGGAGG+GGG | + | chr4.3:35784099-35784118 | MS.gene056691:intron | 40.0% |
| !! | CACTTGATTTTGATCTCCGT+TGG | - | chr4.3:35784922-35784941 | None:intergenic | 40.0% |
| !! | CAGTTGATGGATATTTGGAG+GGG | + | chr4.3:35784098-35784117 | MS.gene056691:intron | 40.0% |
| !! | CCAGTTGATGGATATTTGGA+GGG | + | chr4.3:35784097-35784116 | MS.gene056691:intron | 40.0% |
| !! | TCCAGTTGATGGATATTTGG+AGG | + | chr4.3:35784096-35784115 | MS.gene056691:intron | 40.0% |
| !! | TCCTCCAGTTGATGGATATT+TGG | + | chr4.3:35784093-35784112 | MS.gene056691:intron | 40.0% |
| !!! | GCCTCTTTTTTTGAGAGGTA+AGG | - | chr4.3:35785425-35785444 | None:intergenic | 40.0% |
| AAGTGCTCCTCTCATGGATT+TGG | - | chr4.3:35785525-35785544 | None:intergenic | 45.0% | |
| ACAGGGAAGAAATGACACAC+TGG | - | chr4.3:35785959-35785978 | None:intergenic | 45.0% | |
| ACCATTGGATTCATGGCTAC+GGG | - | chr4.3:35785072-35785091 | None:intergenic | 45.0% | |
| AGACAACTTGGGATTAAGGC+TGG | + | chr4.3:35785923-35785942 | MS.gene056691:CDS | 45.0% | |
| ATGGCATATGGATATGGGAG+GGG | - | chr4.3:35785764-35785783 | None:intergenic | 45.0% | |
| ATGGTTATGGGTCCTATACC+CGG | - | chr4.3:35784895-35784914 | None:intergenic | 45.0% | |
| CATCGAGAAAGGAATGGAGT+CGG | - | chr4.3:35785447-35785466 | None:intergenic | 45.0% | |
| CCCTCCAAATATCCATCAAC+TGG | - | chr4.3:35784100-35784119 | None:intergenic | 45.0% | |
| CCGACAGGTCTAAATTCACA+AGG | + | chr4.3:35784419-35784438 | MS.gene056691:intron | 45.0% | |
| GACAACTTGGGATTAAGGCT+GGG | + | chr4.3:35785924-35785943 | MS.gene056691:CDS | 45.0% | |
| GACCATTGGATTCATGGCTA+CGG | - | chr4.3:35785073-35785092 | None:intergenic | 45.0% | |
| GCTGCGAGATCAAAATCAAG+TGG | + | chr4.3:35784755-35784774 | MS.gene056691:CDS | 45.0% | |
| GGATGACAAGCTACCCATTT+GGG | - | chr4.3:35785743-35785762 | None:intergenic | 45.0% | |
| TCCCTGTGAACCATCTTATG+TGG | + | chr4.3:35785972-35785991 | MS.gene056691:CDS | 45.0% | |
| TCTAACTCTCCTCCAGTTGA+TGG | + | chr4.3:35784085-35784104 | MS.gene056691:intron | 45.0% | |
| TTCTTGGACCGGAAATTGGA+GGG | - | chr4.3:35785396-35785415 | None:intergenic | 45.0% | |
| ! | GAGCATGGACTCTAGAGAAT+TGG | - | chr4.3:35785594-35785613 | None:intergenic | 45.0% |
| !! | AGAGGGATAGTTCTAGGTGA+GGG | - | chr4.3:35785677-35785696 | None:intergenic | 45.0% |
| !! | CTTCTACGGAGTTGGTAGAT+GGG | - | chr4.3:35785286-35785305 | None:intergenic | 45.0% |
| !! | TAGAGGGATAGTTCTAGGTG+AGG | - | chr4.3:35785678-35785697 | None:intergenic | 45.0% |
| !! | TCTTCTACGGAGTTGGTAGA+TGG | - | chr4.3:35785287-35785306 | None:intergenic | 45.0% |
| !! | TTCTACGGAGTTGGTAGATG+GGG | - | chr4.3:35785285-35785304 | None:intergenic | 45.0% |
| !! | TTGGCACCGTAGAGTTTTGT+AGG | + | chr4.3:35784233-35784252 | MS.gene056691:intron | 45.0% |
| !!! | AGTCGGCCTCTTTTTTTGAG+AGG | - | chr4.3:35785430-35785449 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr4.3:35784358-35784377 | None:intergenic | 5.0% |
| !!! | TATTTTAAATTTTAGTTATT+TGG | + | chr4.3:35784016-35784035 | MS.gene056691:intron | 5.0% |
| ACCCGTAGCCATGAATCCAA+TGG | + | chr4.3:35785068-35785087 | MS.gene056691:CDS | 50.0% | |
| AGGGGTTGAAGTTTGACCTC+AGG | - | chr4.3:35784340-35784359 | None:intergenic | 50.0% | |
| CCTCAAGCCAAATCCATGAG+AGG | + | chr4.3:35785515-35785534 | MS.gene056691:CDS | 50.0% | |
| CTCTTCAAGTGCTCCTCTCA+TGG | - | chr4.3:35785531-35785550 | None:intergenic | 50.0% | |
| CTTCTTGGACCGGAAATTGG+AGG | - | chr4.3:35785397-35785416 | None:intergenic | 50.0% | |
| GGGAGTTGTGACATCGAGAA+AGG | - | chr4.3:35785458-35785477 | None:intergenic | 50.0% | |
| GGGATGACAAGCTACCCATT+TGG | - | chr4.3:35785744-35785763 | None:intergenic | 50.0% | |
| GGTCTTTGTCTCCCCTGTAA+CGG | - | chr4.3:35785567-35785586 | None:intergenic | 50.0% | |
| TGGCTTGAGGAGATCCTTCA+GGG | - | chr4.3:35785505-35785524 | None:intergenic | 50.0% | |
| TGGGAGATCTTCTACGGAGT+TGG | - | chr4.3:35785294-35785313 | None:intergenic | 50.0% | |
| ! | AGCACTTGAAGAGTGCGAAG+GGG | + | chr4.3:35785538-35785557 | MS.gene056691:CDS | 50.0% |
| ! | ATGGCTACGGGTCTTATACC+CGG | - | chr4.3:35785060-35785079 | None:intergenic | 50.0% |
| ! | GAGCACTTGAAGAGTGCGAA+GGG | + | chr4.3:35785537-35785556 | MS.gene056691:CDS | 50.0% |
| ! | GGACTCTAGAGAATTGGCAC+AGG | - | chr4.3:35785588-35785607 | None:intergenic | 50.0% |
| ! | GTGAATAAGTAGGGTGCCTG+AGG | + | chr4.3:35784321-35784340 | MS.gene056691:intron | 50.0% |
| ! | TTGGCTTGAGGAGATCCTTC+AGG | - | chr4.3:35785506-35785525 | None:intergenic | 50.0% |
| !! | CCTCTCATGGATTTGGCTTG+AGG | - | chr4.3:35785518-35785537 | None:intergenic | 50.0% |
| !! | GAGGGATAGTTCTAGGTGAG+GGG | - | chr4.3:35785676-35785695 | None:intergenic | 50.0% |
| !! | TCTACGGAGTTGGTAGATGG+GGG | - | chr4.3:35785284-35785303 | None:intergenic | 50.0% |
| CGAAGGGGAAACCGTTACAG+GGG | + | chr4.3:35785553-35785572 | MS.gene056691:CDS | 55.0% | |
| GCGAAGGGGAAACCGTTACA+GGG | + | chr4.3:35785552-35785571 | MS.gene056691:CDS | 55.0% | |
| TGCGAAGGGGAAACCGTTAC+AGG | + | chr4.3:35785551-35785570 | MS.gene056691:CDS | 55.0% | |
| ! | GGAGCACTTGAAGAGTGCGA+AGG | + | chr4.3:35785536-35785555 | MS.gene056691:CDS | 55.0% |
| ! | TTGGTAGATGGGGGGCCTTT+TGG | - | chr4.3:35785275-35785294 | None:intergenic | 55.0% |
| !! | AGTTCTAGGTGAGGGGTTGC+TGG | - | chr4.3:35785669-35785688 | None:intergenic | 55.0% |
| !! | CTACGGAGTTGGTAGATGGG+GGG | - | chr4.3:35785283-35785302 | None:intergenic | 55.0% |
| TCTAGGTGAGGGGTTGCTGG+TGG | - | chr4.3:35785666-35785685 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35783937 | 35786006 | 35783937 | ID=MS.gene056691 |
| chr4.3 | mRNA | 35783937 | 35786006 | 35783937 | ID=MS.gene056691.t1;Parent=MS.gene056691 |
| chr4.3 | exon | 35783937 | 35783990 | 35783937 | ID=MS.gene056691.t1.exon1;Parent=MS.gene056691.t1 |
| chr4.3 | CDS | 35783937 | 35783990 | 35783937 | ID=cds.MS.gene056691.t1;Parent=MS.gene056691.t1 |
| chr4.3 | exon | 35784717 | 35786006 | 35784717 | ID=MS.gene056691.t1.exon2;Parent=MS.gene056691.t1 |
| chr4.3 | CDS | 35784717 | 35786006 | 35784717 | ID=cds.MS.gene056691.t1;Parent=MS.gene056691.t1 |
| Gene Sequence |
| Protein sequence |
