AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60841.t1 MTR_1g090973 69.818 275 79 2 1 272 1 274 5.25e-132 375
MS.gene60841.t1 MTR_1g090960 61.922 281 61 4 1 272 1 244 5.79e-109 315
MS.gene60841.t1 MTR_3g054170 56.846 241 101 2 21 261 17 254 1.31e-92 274
MS.gene60841.t1 MTR_0163s0020 51.071 280 128 3 1 273 2 279 7.86e-91 270
MS.gene60841.t1 MTR_0684s0020 51.071 280 128 3 1 273 1 278 1.06e-90 270
MS.gene60841.t1 MTR_3g047140 52.593 270 126 2 1 269 1 269 1.66e-89 267
MS.gene60841.t1 MTR_3g054200 54.357 241 107 2 21 261 17 254 8.14e-88 262
MS.gene60841.t1 MTR_3g054180 53.498 243 108 3 21 261 21 260 6.83e-84 252
MS.gene60841.t1 MTR_1g090943 49.206 252 124 3 14 264 15 263 1.74e-70 219
MS.gene60841.t1 MTR_3g027280 48.188 276 125 11 1 264 1 270 1.36e-67 211
MS.gene60841.t1 MTR_1g090957 44.406 286 131 11 1 275 1 269 6.77e-60 191
MS.gene60841.t1 MTR_1g090937 43.066 274 137 10 1 265 1 264 1.15e-57 186
MS.gene60841.t1 MTR_1g090930 42.599 277 138 10 1 265 1 268 2.59e-53 175
MS.gene60841.t1 MTR_8g068040 40.377 265 130 11 14 262 10 262 2.83e-47 159
MS.gene60841.t1 MTR_8g068030 39.259 270 130 12 14 262 10 266 6.94e-46 155
MS.gene60841.t1 MTR_5g031160 38.542 288 137 13 6 261 8 287 1.17e-44 152
MS.gene60841.t1 MTR_5g031120 40.161 249 120 11 35 261 38 279 1.03e-41 145
MS.gene60841.t1 MTR_5g031140 36.934 287 143 13 5 261 8 286 1.58e-41 144
MS.gene60841.t1 MTR_5g031100 39.516 248 122 10 35 261 38 278 1.67e-41 144
MS.gene60841.t1 MTR_4g056320 36.940 268 125 7 2 265 6 233 4.32e-41 142
MS.gene60841.t1 MTR_8g067980 39.662 237 126 8 36 259 25 257 2.28e-40 140
MS.gene60841.t1 MTR_8g023510 38.433 268 149 10 1 261 1 259 9.99e-39 137
MS.gene60841.t1 MTR_8g067990 37.553 237 131 8 36 259 25 257 2.84e-38 135
MS.gene60841.t1 MTR_8g068050 36.765 272 151 10 11 269 18 281 9.11e-38 141
MS.gene60841.t1 MTR_4g023810 37.975 237 135 7 30 262 27 255 9.08e-34 124
MS.gene60841.t1 MTR_4g093080 35.926 270 143 12 17 268 9 266 7.24e-33 127
MS.gene60841.t1 MTR_1g014240 37.759 241 130 9 38 262 40 276 8.00e-32 124
MS.gene60841.t1 MTR_8g067960 39.732 224 119 9 49 261 23 241 1.01e-31 117
MS.gene60841.t1 MTR_4g056360 34.586 266 130 10 2 261 6 233 3.76e-31 117
MS.gene60841.t1 MTR_5g031090 34.959 246 134 11 37 261 35 275 1.37e-30 115
MS.gene60841.t1 MTR_5g031030 33.333 243 142 8 35 261 36 274 1.17e-29 113
MS.gene60841.t1 MTR_8g067940 34.657 277 150 13 8 261 13 281 3.70e-28 109
MS.gene60841.t1 MTR_7g115740 32.549 255 151 9 23 262 13 261 3.95e-28 113
MS.gene60841.t1 MTR_7g116130 31.086 267 163 7 15 266 6 266 1.07e-26 109
MS.gene60841.t1 MTR_8g067720 33.824 272 157 11 9 268 4 264 2.74e-26 108
MS.gene60841.t1 MTR_8g067690 36.134 238 138 8 35 261 60 294 5.78e-26 107
MS.gene60841.t1 MTR_4g093110 34.363 259 143 13 19 262 19 265 7.23e-26 107
MS.gene60841.t1 MTR_8g067735 34.711 242 143 8 35 264 43 281 2.71e-25 105
MS.gene60841.t1 MTR_4g093040 33.208 265 155 8 5 254 3 260 5.79e-25 104
MS.gene60841.t1 MTR_8g067930 34.959 246 145 8 35 268 24 266 9.25e-25 103
MS.gene60841.t1 MTR_4g093140 32.819 259 147 12 19 262 19 265 2.29e-24 102
MS.gene60841.t1 MTR_4g093070 35.025 197 116 5 77 262 72 267 7.53e-23 98.2
MS.gene60841.t1 MTR_8g067630 33.929 224 134 7 35 247 30 250 1.44e-21 94.4
MS.gene60841.t1 MTR_3g463370 29.740 269 135 7 11 269 6 230 3.78e-21 89.7
MS.gene60841.t1 MTR_4g093040 38.122 181 94 6 87 254 3 178 1.21e-20 91.7
MS.gene60841.t1 MTR_4g093050 31.048 248 139 12 36 260 27 265 9.32e-18 83.2
MS.gene60841.t1 MTR_5g068770 30.935 278 154 13 13 259 7 277 1.60e-16 79.7
MS.gene60841.t1 MTR_1g048360 30.256 195 116 6 77 259 74 260 1.03e-15 77.0
MS.gene60841.t1 MTR_7g115740 31.169 154 97 5 23 170 13 163 3.80e-15 75.5
MS.gene60841.t1 MTR_7g062940 28.947 266 148 11 22 260 7 258 6.17e-14 72.0
MS.gene60841.t1 MTR_5g077100 31.797 217 125 8 59 263 49 254 1.99e-12 67.4
MS.gene60841.t1 MTR_5g025020 27.500 200 120 7 76 255 87 281 5.71e-12 66.2
MS.gene60841.t1 MTR_7g062890 27.675 271 168 10 16 265 1 264 3.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60841.t1 AT5G10530 39.431 246 122 13 35 262 19 255 1.45e-30 120
MS.gene60841.t1 AT5G65600 34.081 223 128 9 35 241 35 254 2.47e-22 96.7
MS.gene60841.t1 AT5G06740 31.179 263 151 12 16 258 5 257 3.18e-17 81.6
MS.gene60841.t1 AT5G06740 30.855 269 144 12 16 258 17 269 3.39e-17 81.6
MS.gene60841.t1 AT5G55830 30.942 223 131 8 57 260 49 267 6.85e-15 74.7
MS.gene60841.t1 AT5G03140 29.365 252 160 9 17 255 11 257 5.39e-14 72.0
MS.gene60841.t1 AT4G02410 27.138 269 145 11 31 266 22 272 1.16e-12 68.2
MS.gene60841.t1 AT3G53810 27.907 258 149 8 29 260 18 264 3.19e-12 67.0
MS.gene60841.t1 AT4G04960 29.741 232 131 8 36 244 21 243 3.66e-12 66.6
MS.gene60841.t1 AT4G04960 29.741 232 131 9 36 244 21 243 5.68e-12 66.2
MS.gene60841.t1 AT4G02420 27.444 266 163 11 17 260 6 263 2.07e-11 64.3
MS.gene60841.t1 AT5G01560 29.600 250 143 10 38 259 30 274 3.40e-11 63.9
MS.gene60841.t1 AT2G37710 25.600 250 161 8 31 260 20 264 4.17e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCAACATGTGTGTATT+TGG 0.093315 1.4:+73027134 None:intergenic
TTTCTTTAAAGAAAATAAAA+TGG 0.247146 1.4:-73027095 MS.gene60841:CDS
ACTTCCTTGTAGGGAAATTA+TGG 0.265257 1.4:+73027485 None:intergenic
ATTTGAGTTGCTAGGAATAT+TGG 0.266622 1.4:+73027245 None:intergenic
ATTCAGCACCGGTGCCCATT+TGG 0.272619 1.4:-73027386 MS.gene60841:CDS
GAAAAGCTTGCAATATTGTT+TGG 0.279510 1.4:+73026832 None:intergenic
CCCAACAGATCCAAACTATT+TGG 0.303319 1.4:-73027424 MS.gene60841:CDS
TTCAGCACCGGTGCCCATTT+GGG 0.316239 1.4:-73027385 MS.gene60841:CDS
TAAAGAAAATAAAATGGAAT+AGG 0.318424 1.4:-73027089 MS.gene60841:CDS
ATTCCAACATGTGTGTATTT+GGG 0.336887 1.4:+73027135 None:intergenic
AAAAGCTTGCAATATTGTTT+GGG 0.344232 1.4:+73026833 None:intergenic
CATCAGATGTGACAAACTTT+TGG 0.346785 1.4:+73027301 None:intergenic
TGAGTAACACAACAGAAAAT+AGG 0.348280 1.4:+73027601 None:intergenic
GCCCGACCAGCCAAATAGTT+TGG 0.378898 1.4:+73027414 None:intergenic
GCCAAATAGTTTGGATCTGT+TGG 0.383215 1.4:+73027423 None:intergenic
GCCAGTGGTTTCATCCCAAA+TGG 0.385140 1.4:+73027371 None:intergenic
AAATTGAGGCACTTCCTTGT+AGG 0.404967 1.4:+73027475 None:intergenic
TGGGCACCGGTGCTGAATAC+AGG 0.408005 1.4:+73027391 None:intergenic
GGATTTACTATTACTGAAGT+TGG 0.409756 1.4:+73027506 None:intergenic
AAAGAAAATAAAATGGAATA+GGG 0.416250 1.4:-73027088 MS.gene60841:CDS
AGCTAAACAACCTCCATTCA+TGG 0.418791 1.4:-73026885 MS.gene60841:CDS
TTGACTTGAAAGACCATGAA+TGG 0.422733 1.4:+73026872 None:intergenic
CAAAAGTTTGTCACATCTGA+TGG 0.426781 1.4:-73027300 MS.gene60841:CDS
AATTGAGGCACTTCCTTGTA+GGG 0.429899 1.4:+73027476 None:intergenic
AAACCAATCCTTACGGTGTT+CGG 0.435951 1.4:+73026937 None:intergenic
ATAGTTGAAAAGGTACCATC+TGG 0.449708 1.4:+73026991 None:intergenic
TCCGCATACAATCCATTTGT+TGG 0.449749 1.4:-73027192 MS.gene60841:CDS
GTATTTGGGATCCCACCTAT+TGG 0.452286 1.4:+73027149 None:intergenic
CCAAATAGTTTGGATCTGTT+GGG 0.452907 1.4:+73027424 None:intergenic
TCCAAACTATTTGGCTGGTC+GGG 0.455927 1.4:-73027415 MS.gene60841:CDS
ATGGTCTTTCAAGTCAAACT+TGG 0.459323 1.4:-73026866 MS.gene60841:CDS
AGTTTGATAGTTATGCCAAT+AGG 0.461031 1.4:-73027164 MS.gene60841:CDS
CTTCCGAACACCGTAAGGAT+TGG 0.469222 1.4:-73026940 MS.gene60841:CDS
TCAAACTCTACACCAACAAA+TGG 0.477349 1.4:+73027180 None:intergenic
GACTTGAGCAATAGTTGAAA+AGG 0.492838 1.4:+73026981 None:intergenic
AACTCAAATGGTGGAAACCT+TGG 0.495478 1.4:-73027231 MS.gene60841:CDS
TGTCTTAGAGAGATTGTCAT+AGG 0.497716 1.4:+73027035 None:intergenic
ATAAAATGGAATAGGGTGAA+TGG 0.502888 1.4:-73027081 MS.gene60841:CDS
GGCTATATCCAAGATTCCAT+TGG 0.512019 1.4:+73027449 None:intergenic
GATTCCATTGGATAAAATTG+AGG 0.512081 1.4:+73027461 None:intergenic
ATCCAAACTATTTGGCTGGT+CGG 0.513232 1.4:-73027416 MS.gene60841:CDS
CCAGTGGTTTCATCCCAAAT+GGG 0.521697 1.4:+73027372 None:intergenic
AATATTCCTAGCAACTCAAA+TGG 0.529826 1.4:-73027243 MS.gene60841:CDS
ATGGAGGTTGTTTAGCTGAC+CGG 0.532538 1.4:+73026891 None:intergenic
GGAATATTGGCTCGATCTTG+TGG 0.539230 1.4:+73027258 None:intergenic
TCGGGCCCTGTATTCAGCAC+CGG 0.539297 1.4:-73027397 MS.gene60841:CDS
ACAGATCCAAACTATTTGGC+TGG 0.541475 1.4:-73027420 MS.gene60841:CDS
GGGCACCGGTGCTGAATACA+GGG 0.542627 1.4:+73027392 None:intergenic
TTGATAGTTATGCCAATAGG+TGG 0.543485 1.4:-73027161 MS.gene60841:CDS
CCCATTTGGGATGAAACCAC+TGG 0.547396 1.4:-73027372 MS.gene60841:CDS
ATAGTTTGGATCTGTTGGGT+TGG 0.547533 1.4:+73027428 None:intergenic
GAATAGGGTGAATGGCGCCT+TGG 0.550930 1.4:-73027073 MS.gene60841:CDS
TTTCCACCATTTGAGTTGCT+AGG 0.553222 1.4:+73027237 None:intergenic
CAGAGCTTCCGAACACCGTA+AGG 0.561999 1.4:-73026945 MS.gene60841:CDS
GCTGCCACATCAAGAGGTGC+CGG 0.566269 1.4:-73026910 MS.gene60841:CDS
ATCGATGAAACCAAATCAGA+TGG 0.568016 1.4:+73026807 None:intergenic
GTCATGCACTCTGAATGAAA+AGG 0.571753 1.4:+73027326 None:intergenic
GATCCCAAATACACACATGT+TGG 0.576936 1.4:-73027138 MS.gene60841:CDS
AAATCCATAATTTCCCTACA+AGG 0.579177 1.4:-73027489 MS.gene60841:CDS
ACTGAAGTTGGTGATGTCGA+AGG 0.592142 1.4:+73027518 None:intergenic
GAAGCTCGCCACGTTGCCAG+TGG 0.595816 1.4:+73027356 None:intergenic
GTTTCATCCCAAATGGGCAC+CGG 0.596050 1.4:+73027378 None:intergenic
ATTCCTAGCAACTCAAATGG+TGG 0.600209 1.4:-73027240 MS.gene60841:CDS
TGATAGTTATGCCAATAGGT+GGG 0.619156 1.4:-73027160 MS.gene60841:CDS
ATTTGTTGGAAAGAAAGCCA+TGG 0.619705 1.4:+73027629 None:intergenic
GTGGTTGTATCTTACCCAGA+TGG 0.625936 1.4:-73027006 MS.gene60841:CDS
CTGACCGGCACCTCTTGATG+TGG 0.630323 1.4:+73026906 None:intergenic
GCTTGCAATATTGTTTGGGG+TGG 0.636102 1.4:+73026837 None:intergenic
AAAGCTTGCAATATTGTTTG+GGG 0.645833 1.4:+73026834 None:intergenic
TAGTTGAAAAGGTACCATCT+GGG 0.650948 1.4:+73026992 None:intergenic
TCTCTCTAAGACATTGAATG+TGG 0.660926 1.4:-73027025 MS.gene60841:CDS
ACCAACAAATGGATTGTATG+CGG 0.667112 1.4:+73027191 None:intergenic
ACTTGAAAGACCATGAATGG+AGG 0.674593 1.4:+73026875 None:intergenic
GGAGATATTAACATCGACCA+AGG 0.682054 1.4:+73027056 None:intergenic
GGATGAAACCACTGGCAACG+TGG 0.707919 1.4:-73027364 MS.gene60841:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTAAAGAAAATAAAA+TGG - chr1.4:73027354-73027373 MS.gene60841:CDS 10.0%
!! AAAGAAAATAAAATGGAATA+GGG - chr1.4:73027361-73027380 MS.gene60841:CDS 15.0%
!! TAAAGAAAATAAAATGGAAT+AGG - chr1.4:73027360-73027379 MS.gene60841:CDS 15.0%
! AAAAGCTTGCAATATTGTTT+GGG + chr1.4:73027619-73027638 None:intergenic 25.0%
!! AATTTTATCCAATGGAATCT+TGG - chr1.4:73026992-73027011 MS.gene60841:CDS 25.0%
!!! GAAAATAGGTTTTGATTTGT+TGG + chr1.4:73026837-73026856 None:intergenic 25.0%
AAAGCTTGCAATATTGTTTG+GGG + chr1.4:73027618-73027637 None:intergenic 30.0%
AAATCCATAATTTCCCTACA+AGG - chr1.4:73026960-73026979 MS.gene60841:CDS 30.0%
AATATTCCTAGCAACTCAAA+TGG - chr1.4:73027206-73027225 MS.gene60841:CDS 30.0%
AATTCCAACATGTGTGTATT+TGG + chr1.4:73027318-73027337 None:intergenic 30.0%
ATAAAATGGAATAGGGTGAA+TGG - chr1.4:73027368-73027387 MS.gene60841:CDS 30.0%
ATTCCAACATGTGTGTATTT+GGG + chr1.4:73027317-73027336 None:intergenic 30.0%
GAAAAGCTTGCAATATTGTT+TGG + chr1.4:73027620-73027639 None:intergenic 30.0%
GATTCCATTGGATAAAATTG+AGG + chr1.4:73026991-73027010 None:intergenic 30.0%
GGATTTACTATTACTGAAGT+TGG + chr1.4:73026946-73026965 None:intergenic 30.0%
TGAGTAACACAACAGAAAAT+AGG + chr1.4:73026851-73026870 None:intergenic 30.0%
! AGTTTGATAGTTATGCCAAT+AGG - chr1.4:73027285-73027304 MS.gene60841:CDS 30.0%
! AGTTTTCATCAACAATTCCA+AGG + chr1.4:73027238-73027257 None:intergenic 30.0%
!! ATTTGAGTTGCTAGGAATAT+TGG + chr1.4:73027207-73027226 None:intergenic 30.0%
ACTTCCTTGTAGGGAAATTA+TGG + chr1.4:73026967-73026986 None:intergenic 35.0%
AGCAGAAAAACCAATCCTTA+CGG + chr1.4:73027522-73027541 None:intergenic 35.0%
CAAAAGTTTGTCACATCTGA+TGG - chr1.4:73027149-73027168 MS.gene60841:CDS 35.0%
CCAAATAGTTTGGATCTGTT+GGG + chr1.4:73027028-73027047 None:intergenic 35.0%
GACTTGAGCAATAGTTGAAA+AGG + chr1.4:73027471-73027490 None:intergenic 35.0%
TCAAACTCTACACCAACAAA+TGG + chr1.4:73027272-73027291 None:intergenic 35.0%
TGATAGTTATGCCAATAGGT+GGG - chr1.4:73027289-73027308 MS.gene60841:CDS 35.0%
TGTCTTAGAGAGATTGTCAT+AGG + chr1.4:73027417-73027436 None:intergenic 35.0%
! AGTGCCTCAATTTTATCCAA+TGG - chr1.4:73026984-73027003 MS.gene60841:CDS 35.0%
! ATGGTCTTTCAAGTCAAACT+TGG - chr1.4:73027583-73027602 MS.gene60841:CDS 35.0%
! CATCAGATGTGACAAACTTT+TGG + chr1.4:73027151-73027170 None:intergenic 35.0%
! TTGACTTGAAAGACCATGAA+TGG + chr1.4:73027580-73027599 None:intergenic 35.0%
! TTGATAGTTATGCCAATAGG+TGG - chr1.4:73027288-73027307 MS.gene60841:CDS 35.0%
!! ACCAACAAATGGATTGTATG+CGG + chr1.4:73027261-73027280 None:intergenic 35.0%
!! ATAGTTGAAAAGGTACCATC+TGG + chr1.4:73027461-73027480 None:intergenic 35.0%
!! TAGTTGAAAAGGTACCATCT+GGG + chr1.4:73027460-73027479 None:intergenic 35.0%
!! TCTCTCTAAGACATTGAATG+TGG - chr1.4:73027424-73027443 MS.gene60841:CDS 35.0%
!!! GAAGGAAACTGTTTTTTGTG+AGG + chr1.4:73026916-73026935 None:intergenic 35.0%
AAACCAATCCTTACGGTGTT+CGG + chr1.4:73027515-73027534 None:intergenic 40.0%
ACAGATCCAAACTATTTGGC+TGG - chr1.4:73027029-73027048 MS.gene60841:CDS 40.0%
ACTTGAAAGACCATGAATGG+AGG + chr1.4:73027577-73027596 None:intergenic 40.0%
AGCTAAACAACCTCCATTCA+TGG - chr1.4:73027564-73027583 MS.gene60841:CDS 40.0%
ATAGTTTGGATCTGTTGGGT+TGG + chr1.4:73027024-73027043 None:intergenic 40.0%
ATCCAAACTATTTGGCTGGT+CGG - chr1.4:73027033-73027052 MS.gene60841:CDS 40.0%
ATTCCTAGCAACTCAAATGG+TGG - chr1.4:73027209-73027228 MS.gene60841:CDS 40.0%
CCCAACAGATCCAAACTATT+TGG - chr1.4:73027025-73027044 MS.gene60841:CDS 40.0%
GATCCCAAATACACACATGT+TGG - chr1.4:73027311-73027330 MS.gene60841:CDS 40.0%
GCCAAATAGTTTGGATCTGT+TGG + chr1.4:73027029-73027048 None:intergenic 40.0%
GGAGATATTAACATCGACCA+AGG + chr1.4:73027396-73027415 None:intergenic 40.0%
GGCTATATCCAAGATTCCAT+TGG + chr1.4:73027003-73027022 None:intergenic 40.0%
GTCATGCACTCTGAATGAAA+AGG + chr1.4:73027126-73027145 None:intergenic 40.0%
TCCGCATACAATCCATTTGT+TGG - chr1.4:73027257-73027276 MS.gene60841:CDS 40.0%
! AAATTGAGGCACTTCCTTGT+AGG + chr1.4:73026977-73026996 None:intergenic 40.0%
! AACTCAAATGGTGGAAACCT+TGG - chr1.4:73027218-73027237 MS.gene60841:CDS 40.0%
! AATTGAGGCACTTCCTTGTA+GGG + chr1.4:73026976-73026995 None:intergenic 40.0%
!! TTTCCACCATTTGAGTTGCT+AGG + chr1.4:73027215-73027234 None:intergenic 40.0%
ATGGAGGTTGTTTAGCTGAC+CGG + chr1.4:73027561-73027580 None:intergenic 45.0%
CCAGTGGTTTCATCCCAAAT+GGG + chr1.4:73027080-73027099 None:intergenic 45.0%
GCTTGCAATATTGTTTGGGG+TGG + chr1.4:73027615-73027634 None:intergenic 45.0%
GTGGTTGTATCTTACCCAGA+TGG - chr1.4:73027443-73027462 MS.gene60841:CDS 45.0%
! GTATTTGGGATCCCACCTAT+TGG + chr1.4:73027303-73027322 None:intergenic 45.0%
! TCCAAACTATTTGGCTGGTC+GGG - chr1.4:73027034-73027053 MS.gene60841:CDS 45.0%
! TTTTCTGCTGCCACATCAAG+AGG - chr1.4:73027533-73027552 MS.gene60841:CDS 45.0%
!! ACTGAAGTTGGTGATGTCGA+AGG + chr1.4:73026934-73026953 None:intergenic 45.0%
!! GGAATATTGGCTCGATCTTG+TGG + chr1.4:73027194-73027213 None:intergenic 45.0%
CTTCCGAACACCGTAAGGAT+TGG - chr1.4:73027509-73027528 MS.gene60841:CDS 50.0%
GCCAGTGGTTTCATCCCAAA+TGG + chr1.4:73027081-73027100 None:intergenic 50.0%
GTTTCATCCCAAATGGGCAC+CGG + chr1.4:73027074-73027093 None:intergenic 50.0%
! CCCATTTGGGATGAAACCAC+TGG - chr1.4:73027077-73027096 MS.gene60841:CDS 50.0%
CAGAGCTTCCGAACACCGTA+AGG - chr1.4:73027504-73027523 MS.gene60841:CDS 55.0%
GAATAGGGTGAATGGCGCCT+TGG - chr1.4:73027376-73027395 MS.gene60841:CDS 55.0%
GCCCGACCAGCCAAATAGTT+TGG + chr1.4:73027038-73027057 None:intergenic 55.0%
GGATGAAACCACTGGCAACG+TGG - chr1.4:73027085-73027104 MS.gene60841:CDS 55.0%
!! ATTCAGCACCGGTGCCCATT+TGG - chr1.4:73027063-73027082 MS.gene60841:CDS 55.0%
!! TTCAGCACCGGTGCCCATTT+GGG - chr1.4:73027064-73027083 MS.gene60841:CDS 55.0%
CTGACCGGCACCTCTTGATG+TGG + chr1.4:73027546-73027565 None:intergenic 60.0%
TCGGGCCCTGTATTCAGCAC+CGG - chr1.4:73027052-73027071 MS.gene60841:CDS 60.0%
! GCTGCCACATCAAGAGGTGC+CGG - chr1.4:73027539-73027558 MS.gene60841:CDS 60.0%
!! GGGCACCGGTGCTGAATACA+GGG + chr1.4:73027060-73027079 None:intergenic 60.0%
!! TGGGCACCGGTGCTGAATAC+AGG + chr1.4:73027061-73027080 None:intergenic 60.0%
GAAGCTCGCCACGTTGCCAG+TGG + chr1.4:73027096-73027115 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 73026822 73027649 73026822 ID=MS.gene60841
chr1.4 mRNA 73026822 73027649 73026822 ID=MS.gene60841.t1;Parent=MS.gene60841
chr1.4 exon 73026822 73027649 73026822 ID=MS.gene60841.t1.exon1;Parent=MS.gene60841.t1
chr1.4 CDS 73026822 73027649 73026822 ID=cds.MS.gene60841.t1;Parent=MS.gene60841.t1
Gene Sequence

>MS.gene60841

ATGGCTTTCTTTCCAACAAATCAAAACCTATTTTCTGTTGTGTTACTCATTTTCACAACTTCATTTCTCTTGTTAGCAACAGAAATAGTGACCTCACAAAAAACAGTTTCCTTCGACATCACCAACTTCAGTAATAGTAAATCCATAATTTCCCTACAAGGAAGTGCCTCAATTTTATCCAATGGAATCTTGGATATAGCCAACCCAACAGATCCAAACTATTTGGCTGGTCGGGCCCTGTATTCAGCACCGGTGCCCATTTGGGATGAAACCACTGGCAACGTGGCGAGCTTCGTCACTTCCTTTTCATTCAGAGTGCATGACTACCAAAAGTTTGTCACATCTGATGGATTTGTTTTCTTTCTTGTACCACAAGATCGAGCCAATATTCCTAGCAACTCAAATGGTGGAAACCTTGGAATTGTTGATGAAAACTCCGCATACAATCCATTTGTTGGTGTAGAGTTTGATAGTTATGCCAATAGGTGGGATCCCAAATACACACATGTTGGAATTAATGCAAACTCTTTGATTTCTTTAAAGAAAATAAAATGGAATAGGGTGAATGGCGCCTTGGTCGATGTTAATATCTCCTATGACAATCTCTCTAAGACATTGAATGTGGTTGTATCTTACCCAGATGGTACCTTTTCAACTATTGCTCAAGTCATTGATTTGAAAGCAGAGCTTCCGAACACCGTAAGGATTGGTTTTTCTGCTGCCACATCAAGAGGTGCCGGTCAGCTAAACAACCTCCATTCATGGTCTTTCAAGTCAAACTTGGACACAACCACCCCAAACAATATTGCAAGCTTTTCAGCCATCTGA
Protein sequence

>MS.gene60841.t1

MAFFPTNQNLFSVVLLIFTTSFLLLATEIVTSQKTVSFDITNFSNSKSIISLQGSASILSNGILDIANPTDPNYLAGRALYSAPVPIWDETTGNVASFVTSFSFRVHDYQKFVTSDGFVFFLVPQDRANIPSNSNGGNLGIVDENSAYNPFVGVEFDSYANRWDPKYTHVGINANSLISLKKIKWNRVNGALVDVNISYDNLSKTLNVVVSYPDGTFSTIAQVIDLKAELPNTVRIGFSAATSRGAGQLNNLHSWSFKSNLDTTTPNNIASFSAI