Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61042.t1 | XP_003628734.2 | 98.4 | 253 | 4 | 0 | 1 | 253 | 42 | 294 | 2.60E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61042.t1 | Q4R599 | 36.4 | 231 | 126 | 5 | 19 | 231 | 39 | 266 | 1.2e-31 | 138.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61042.t1 | G7LG96 | 98.4 | 253 | 4 | 0 | 1 | 253 | 42 | 294 | 1.9e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40349 | MS.gene61042 | PPI |
| MS.gene055455 | MS.gene61042 | PPI |
| MS.gene007531 | MS.gene61042 | PPI |
| MS.gene007416 | MS.gene61042 | PPI |
| MS.gene055453 | MS.gene61042 | PPI |
| MS.gene20079 | MS.gene61042 | PPI |
| MS.gene055454 | MS.gene61042 | PPI |
| MS.gene22417 | MS.gene61042 | PPI |
| MS.gene014694 | MS.gene61042 | PPI |
| MS.gene073052 | MS.gene61042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61042.t1 | MTR_8g066180 | 98.419 | 253 | 4 | 0 | 1 | 253 | 42 | 294 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61042.t1 | AT2G03780 | 76.955 | 243 | 56 | 0 | 10 | 252 | 2 | 244 | 6.11e-143 | 400 |
| MS.gene61042.t1 | AT2G03780 | 76.955 | 243 | 56 | 0 | 10 | 252 | 45 | 287 | 1.14e-142 | 401 |
| MS.gene61042.t1 | AT2G03780 | 77.665 | 197 | 44 | 0 | 56 | 252 | 6 | 202 | 5.29e-114 | 325 |
Find 47 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGATATTCGGTATATT+TGG | 0.219366 | 8.1:+38291255 | None:intergenic |
| ATCAGAGTATATACCACTTT+TGG | 0.223331 | 8.1:-38287852 | MS.gene61042:CDS |
| AACATCCTTGACTATCTATT+AGG | 0.234815 | 8.1:-38288834 | MS.gene61042:CDS |
| TATTCGGTATATTTGGTAAA+AGG | 0.273813 | 8.1:+38291262 | None:intergenic |
| ACATCCTTGACTATCTATTA+GGG | 0.277012 | 8.1:-38288833 | MS.gene61042:CDS |
| TACAAGGTTATTGAGATATT+CGG | 0.335811 | 8.1:+38291246 | None:intergenic |
| ATACCTCATAGTTCAATATC+TGG | 0.349942 | 8.1:+38287794 | None:intergenic |
| GCTTTGCACGTGATATATAT+AGG | 0.370536 | 8.1:-38288491 | MS.gene61042:CDS |
| TCGACTAGTCAAAGAATTGC+AGG | 0.386016 | 8.1:-38289104 | MS.gene61042:CDS |
| TGTATTTGTAGAATGATAAA+CGG | 0.403793 | 8.1:-38289677 | MS.gene61042:intron |
| GAGCTGATGCGTTTGGCTAT+TGG | 0.405037 | 8.1:-38288558 | MS.gene61042:CDS |
| TACACTCGTCGTGCCACATA+TGG | 0.408301 | 8.1:-38288463 | MS.gene61042:CDS |
| GACCGGAGAGCTGATGCGTT+TGG | 0.425505 | 8.1:-38288565 | MS.gene61042:CDS |
| TGATCCAAGTTCTTTCTTAG+TGG | 0.448490 | 8.1:-38287822 | MS.gene61042:CDS |
| TATAACAATGAATAGCAAAA+AGG | 0.457983 | 8.1:-38289628 | MS.gene61042:CDS |
| CTTTGCACGTGATATATATA+GGG | 0.471371 | 8.1:-38288490 | MS.gene61042:CDS |
| GATCCAAGTTCTTTCTTAGT+GGG | 0.475255 | 8.1:-38287821 | MS.gene61042:CDS |
| AGTACTTGAGAAAGCAGAAA+AGG | 0.487405 | 8.1:-38289158 | MS.gene61042:CDS |
| TGCCACTGATTCTGCTATGA+AGG | 0.492267 | 8.1:-38291287 | MS.gene61042:CDS |
| AGCCAAACGCATCAGCTCTC+CGG | 0.501275 | 8.1:+38288563 | None:intergenic |
| AGGTCATATTTCAAGTGCAC+AGG | 0.506446 | 8.1:-38289608 | MS.gene61042:intron |
| TTCTGATATGAAAACAAAGA+TGG | 0.507798 | 8.1:-38288433 | MS.gene61042:CDS |
| CTAAGACGAGCCTACTCACC+CGG | 0.512679 | 8.1:-38289064 | MS.gene61042:CDS |
| GTATTTGTAGAATGATAAAC+GGG | 0.514201 | 8.1:-38289676 | MS.gene61042:intron |
| TGCTTTAGTGTTCATGTCAG+AGG | 0.516215 | 8.1:-38287875 | MS.gene61042:CDS |
| ACTCCCACTAAGAAAGAACT+TGG | 0.522033 | 8.1:+38287818 | None:intergenic |
| TTTCATGACACTTTGGAGCA+TGG | 0.523941 | 8.1:+38288407 | None:intergenic |
| GGATCATTTGATCCCAAAAG+TGG | 0.531182 | 8.1:+38287839 | None:intergenic |
| TTACAGCTTGCAGATTTGAC+CGG | 0.531970 | 8.1:-38288582 | MS.gene61042:intron |
| ATCTGCAGAGGCTGAAGAGA+AGG | 0.540287 | 8.1:+38288858 | None:intergenic |
| AGTGTCATGAAAATAGAGAA+TGG | 0.543198 | 8.1:-38288396 | MS.gene61042:intron |
| TGACTAGTCGAGACACGTGC+TGG | 0.545601 | 8.1:+38289116 | None:intergenic |
| AAAGTATACCCCGGGTGAGT+AGG | 0.551350 | 8.1:+38289054 | None:intergenic |
| GTTCCAGATATTGAACTATG+AGG | 0.571700 | 8.1:-38287797 | None:intergenic |
| CATAGCAGAATCAGTGGCAG+TGG | 0.579726 | 8.1:+38291291 | None:intergenic |
| AGTGGCAGTGTCAGTAGCAA+TGG | 0.585370 | 8.1:+38291309 | None:intergenic |
| TCAGAACTGTCATCCATATG+TGG | 0.587378 | 8.1:+38288450 | None:intergenic |
| TGATGCGTTTGGCTATTGGT+AGG | 0.594582 | 8.1:-38288554 | MS.gene61042:CDS |
| TCAAGGATGTTTATCTGCAG+AGG | 0.603539 | 8.1:+38288846 | None:intergenic |
| GCTATTGGTAGGATATCAGA+TGG | 0.607525 | 8.1:-38288543 | MS.gene61042:CDS |
| TTCCTTCATAGCAGAATCAG+TGG | 0.623318 | 8.1:+38291285 | None:intergenic |
| TAAGACGAGCCTACTCACCC+GGG | 0.643500 | 8.1:-38289063 | MS.gene61042:CDS |
| CGACTAGTCAAAGAATTGCA+GGG | 0.652001 | 8.1:-38289103 | MS.gene61042:CDS |
| CATCCTTGACTATCTATTAG+GGG | 0.657819 | 8.1:-38288832 | MS.gene61042:intron |
| ATACCCCTAATAGATAGTCA+AGG | 0.666089 | 8.1:+38288829 | None:intergenic |
| AAGACGAGCCTACTCACCCG+GGG | 0.730892 | 8.1:-38289062 | MS.gene61042:intron |
| TGAAGAGAAGGATCACTAAG+CGG | 0.736059 | 8.1:+38288870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTAATCTTTTTAAAA+AGG | - | chr8.1:38289908-38289927 | MS.gene61042:intron | 10.0% |
| !!! | TTTATTACTATTTTTCATTT+GGG | - | chr8.1:38288016-38288035 | MS.gene61042:intron | 10.0% |
| !!! | TTTTATTACTATTTTTCATT+TGG | - | chr8.1:38288015-38288034 | MS.gene61042:intron | 10.0% |
| !!! | TTTTTAAAAAGATTAGAAAA+TGG | + | chr8.1:38289909-38289928 | None:intergenic | 10.0% |
| !! | AAAAATTCATTAAGATAGAA+AGG | + | chr8.1:38289784-38289803 | None:intergenic | 15.0% |
| !! | ATACAGTAAAATAAAATTTG+AGG | + | chr8.1:38289142-38289161 | None:intergenic | 15.0% |
| !! | GTAATAAAAATCAAATCTTT+AGG | + | chr8.1:38288004-38288023 | None:intergenic | 15.0% |
| !! | TAATATTGAGAACATTTAAA+AGG | + | chr8.1:38290513-38290532 | None:intergenic | 15.0% |
| !! | TACAGTAAAATAAAATTTGA+GGG | + | chr8.1:38289141-38289160 | None:intergenic | 15.0% |
| !! | TTTGTATAAAAAACTCAATA+TGG | - | chr8.1:38291097-38291116 | MS.gene61042:intron | 15.0% |
| !!! | ATTTCATTTTCATATTCAAA+AGG | + | chr8.1:38289750-38289769 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTCCATAACAA+AGG | - | chr8.1:38289798-38289817 | MS.gene61042:intron | 15.0% |
| !!! | CTTCTTATTTTTTGTTTTAA+GGG | - | chr8.1:38290901-38290920 | MS.gene61042:intron | 15.0% |
| !!! | TAGATATAACATTTTAACAA+GGG | - | chr8.1:38290359-38290378 | MS.gene61042:intron | 15.0% |
| !!! | TTATTACTATTTTTCATTTG+GGG | - | chr8.1:38288017-38288036 | MS.gene61042:intron | 15.0% |
| !!! | TTTCATTTTCATATTCAAAA+GGG | + | chr8.1:38289749-38289768 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCCATAACAAA+GGG | - | chr8.1:38289799-38289818 | MS.gene61042:intron | 15.0% |
| !! | AAACAAAAAATAAGAAGGAA+CGG | + | chr8.1:38290898-38290917 | None:intergenic | 20.0% |
| !! | AATGTTGATATTAATGAGTT+TGG | - | chr8.1:38291073-38291092 | MS.gene61042:intron | 20.0% |
| !! | ACAGTAAAATAAAATTTGAG+GGG | + | chr8.1:38289140-38289159 | None:intergenic | 20.0% |
| !! | ATTAAAGAACAAATAAAGCA+TGG | + | chr8.1:38289669-38289688 | None:intergenic | 20.0% |
| !! | CCTTAAAACAAAAAATAAGA+AGG | + | chr8.1:38290903-38290922 | None:intergenic | 20.0% |
| !! | TATAACAATGAATAGCAAAA+AGG | - | chr8.1:38289484-38289503 | MS.gene61042:intron | 20.0% |
| !! | TGTATTTGTAGAATGATAAA+CGG | - | chr8.1:38289435-38289454 | MS.gene61042:intron | 20.0% |
| !! | TTAGAAGTAACAAAATTTAC+TGG | + | chr8.1:38290950-38290969 | None:intergenic | 20.0% |
| !!! | AACTGATATTTTACTACATT+CGG | - | chr8.1:38288456-38288475 | MS.gene61042:CDS | 20.0% |
| !!! | ATCAAATTTGTTATATGAAG+AGG | + | chr8.1:38289252-38289271 | None:intergenic | 20.0% |
| !!! | CCTTCTTATTTTTTGTTTTA+AGG | - | chr8.1:38290900-38290919 | MS.gene61042:intron | 20.0% |
| !!! | CTTAGAAGTATATAGATATT+GGG | - | chr8.1:38289321-38289340 | MS.gene61042:intron | 20.0% |
| !!! | GTAAATTTTGTTACTTCTAA+TGG | - | chr8.1:38290950-38290969 | MS.gene61042:intron | 20.0% |
| !!! | GTAGATATAACATTTTAACA+AGG | - | chr8.1:38290358-38290377 | MS.gene61042:intron | 20.0% |
| !!! | TATTACTATTTTTCATTTGG+GGG | - | chr8.1:38288018-38288037 | MS.gene61042:intron | 20.0% |
| ! | AAATAGACTCTTAGCTAAAA+GGG | + | chr8.1:38288094-38288113 | None:intergenic | 25.0% |
| ! | AACAAAAAATAAGAAGGAAC+GGG | + | chr8.1:38290897-38290916 | None:intergenic | 25.0% |
| ! | AACACACAATTTAGTACAAA+GGG | + | chr8.1:38288386-38288405 | None:intergenic | 25.0% |
| ! | AACATTATATCATCAAGCAT+TGG | + | chr8.1:38289850-38289869 | None:intergenic | 25.0% |
| ! | AACGGTAAGATAACAATAAA+AGG | + | chr8.1:38290319-38290338 | None:intergenic | 25.0% |
| ! | AAGTATAAATTCTGAATGTG+AGG | + | chr8.1:38289695-38289714 | None:intergenic | 25.0% |
| ! | ACATTATATCATCAAGCATT+GGG | + | chr8.1:38289849-38289868 | None:intergenic | 25.0% |
| ! | ACGGTAAGATAACAATAAAA+GGG | + | chr8.1:38290318-38290337 | None:intergenic | 25.0% |
| ! | ACTTAGGAAAAATTGAAAGA+TGG | - | chr8.1:38288946-38288965 | MS.gene61042:CDS | 25.0% |
| ! | AGAAATGGTTATTCTCATTT+AGG | - | chr8.1:38288063-38288082 | MS.gene61042:intron | 25.0% |
| ! | AGTATAAATTCTGAATGTGA+GGG | + | chr8.1:38289694-38289713 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTGTCCAAATA+TGG | + | chr8.1:38288170-38288189 | None:intergenic | 25.0% |
| ! | ATATGCAACCATATTGTAAA+GGG | + | chr8.1:38289374-38289393 | None:intergenic | 25.0% |
| ! | ATTATACTAGTCCTTTAGTA+TGG | + | chr8.1:38289076-38289095 | None:intergenic | 25.0% |
| ! | ATTGAGATATTCGGTATATT+TGG | + | chr8.1:38287860-38287879 | None:intergenic | 25.0% |
| ! | CTTAATTTAGAGATTACCAA+AGG | + | chr8.1:38290455-38290474 | None:intergenic | 25.0% |
| ! | GATTACCAAAGGAAATATAA+AGG | + | chr8.1:38290444-38290463 | None:intergenic | 25.0% |
| ! | GTATTTGTAGAATGATAAAC+GGG | - | chr8.1:38289436-38289455 | MS.gene61042:intron | 25.0% |
| ! | GTTTATCATTCTACAAATAC+AGG | + | chr8.1:38289436-38289455 | None:intergenic | 25.0% |
| ! | TAAATAGACTCTTAGCTAAA+AGG | + | chr8.1:38288095-38288114 | None:intergenic | 25.0% |
| ! | TACAAGGTTATTGAGATATT+CGG | + | chr8.1:38287869-38287888 | None:intergenic | 25.0% |
| ! | TATTCGGTATATTTGGTAAA+AGG | + | chr8.1:38287853-38287872 | None:intergenic | 25.0% |
| ! | TCAATCCTAACAAATTACTA+GGG | + | chr8.1:38288800-38288819 | None:intergenic | 25.0% |
| ! | TCAATTAAGTTAATCCAAAC+AGG | - | chr8.1:38288360-38288379 | MS.gene61042:intron | 25.0% |
| ! | TGAAGATAAGAAACATTACA+AGG | + | chr8.1:38287885-38287904 | None:intergenic | 25.0% |
| ! | TGGACTATCATTATATTCAA+TGG | + | chr8.1:38290874-38290893 | None:intergenic | 25.0% |
| ! | TTCTGATATGAAAACAAAGA+TGG | - | chr8.1:38290679-38290698 | MS.gene61042:intron | 25.0% |
| ! | TTGAGAACATTTAAAAGGAA+AGG | + | chr8.1:38290508-38290527 | None:intergenic | 25.0% |
| ! | TTGATTAGTGTATATGGAAT+GGG | - | chr8.1:38288976-38288995 | MS.gene61042:intron | 25.0% |
| ! | TTTATCAATTACACTTTCCA+TGG | - | chr8.1:38289619-38289638 | MS.gene61042:CDS | 25.0% |
| ! | TTTCATATTCAAAAGGGAAA+GGG | + | chr8.1:38289743-38289762 | None:intergenic | 25.0% |
| !! | AATAGAGAATGGTAATGTAT+TGG | - | chr8.1:38290727-38290746 | MS.gene61042:intron | 25.0% |
| !! | GCTTAGAAGTATATAGATAT+TGG | - | chr8.1:38289320-38289339 | MS.gene61042:intron | 25.0% |
| !! | TAACTGTTGATTAGTGTATA+TGG | - | chr8.1:38288970-38288989 | MS.gene61042:intron | 25.0% |
| !! | TATTGAGATCTTTAACCTTT+TGG | - | chr8.1:38289001-38289020 | MS.gene61042:intron | 25.0% |
| !! | TTTATCTGATATACTTGTTG+TGG | - | chr8.1:38290119-38290138 | MS.gene61042:intron | 25.0% |
| !! | TTTTCATATTCAAAAGGGAA+AGG | + | chr8.1:38289744-38289763 | None:intergenic | 25.0% |
| !!! | ATTACTATTTTTCATTTGGG+GGG | - | chr8.1:38288019-38288038 | MS.gene61042:intron | 25.0% |
| !!! | TTATCTGATATACTTGTTGT+GGG | - | chr8.1:38290120-38290139 | MS.gene61042:intron | 25.0% |
| !!! | TTGTTTTTATAAGCTGCTTT+GGG | - | chr8.1:38288237-38288256 | MS.gene61042:intron | 25.0% |
| !!! | TTTTAGCTAAGAGTCTATTT+AGG | - | chr8.1:38288094-38288113 | MS.gene61042:intron | 25.0% |
| !!! | TTTTGTTACTTCTAATGGAA+TGG | - | chr8.1:38290955-38290974 | MS.gene61042:intron | 25.0% |
| AACATCCTTGACTATCTATT+AGG | - | chr8.1:38290278-38290297 | MS.gene61042:intron | 30.0% | |
| AAGATTAGAAAATGGTATGC+CGG | + | chr8.1:38289901-38289920 | None:intergenic | 30.0% | |
| ACAGAAGGAACAAACATATA+CGG | + | chr8.1:38289027-38289046 | None:intergenic | 30.0% | |
| ACATCCTTGACTATCTATTA+GGG | - | chr8.1:38290279-38290298 | MS.gene61042:intron | 30.0% | |
| ACATGTGATCATTATCTTCT+TGG | - | chr8.1:38289870-38289889 | MS.gene61042:intron | 30.0% | |
| ACTCAACAACATGAATAGAA+CGG | + | chr8.1:38290337-38290356 | None:intergenic | 30.0% | |
| AGTATGGAAAAAGTAGCAAA+CGG | + | chr8.1:38289060-38289079 | None:intergenic | 30.0% | |
| AGTGTCATGAAAATAGAGAA+TGG | - | chr8.1:38290716-38290735 | MS.gene61042:intron | 30.0% | |
| ATACCTCGATTAAGATATTG+AGG | + | chr8.1:38290803-38290822 | None:intergenic | 30.0% | |
| ATCTAGATCCTTTCTCTAAT+GGG | + | chr8.1:38288853-38288872 | None:intergenic | 30.0% | |
| ATCTTAATCGAGGTATGAAT+AGG | - | chr8.1:38290807-38290826 | MS.gene61042:intron | 30.0% | |
| ATTGACTGAAATCCTAACAA+AGG | - | chr8.1:38288815-38288834 | MS.gene61042:intron | 30.0% | |
| CAACAACTGTTATCAAGATT+TGG | + | chr8.1:38291206-38291225 | None:intergenic | 30.0% | |
| CAACACACAATTTAGTACAA+AGG | + | chr8.1:38288387-38288406 | None:intergenic | 30.0% | |
| CAATCCTAACAAATTACTAG+GGG | + | chr8.1:38288799-38288818 | None:intergenic | 30.0% | |
| CACTTATGAATCCATTGAAA+TGG | + | chr8.1:38290385-38290404 | None:intergenic | 30.0% | |
| CGGTAAGATAACAATAAAAG+GGG | + | chr8.1:38290317-38290336 | None:intergenic | 30.0% | |
| CTTTGCACGTGATATATATA+GGG | - | chr8.1:38290622-38290641 | MS.gene61042:intron | 30.0% | |
| GATATGCAACCATATTGTAA+AGG | + | chr8.1:38289375-38289394 | None:intergenic | 30.0% | |
| GATCACTTCACTTTCTATTA+GGG | + | chr8.1:38291146-38291165 | None:intergenic | 30.0% | |
| GGTAAGATAACAATAAAAGG+GGG | + | chr8.1:38290316-38290335 | None:intergenic | 30.0% | |
| GTCAATCCTAACAAATTACT+AGG | + | chr8.1:38288801-38288820 | None:intergenic | 30.0% | |
| GTTGATTAGTGTATATGGAA+TGG | - | chr8.1:38288975-38288994 | MS.gene61042:intron | 30.0% | |
| TAGTCATTCCCTTTACAATA+TGG | - | chr8.1:38289363-38289382 | MS.gene61042:intron | 30.0% | |
| TGATCACTTCACTTTCTATT+AGG | + | chr8.1:38291147-38291166 | None:intergenic | 30.0% | |
| TGCATATCATTCAATGCTAT+TGG | - | chr8.1:38289387-38289406 | MS.gene61042:intron | 30.0% | |
| TTATGATTTAGTGTCGCAAA+AGG | - | chr8.1:38288123-38288142 | MS.gene61042:intron | 30.0% | |
| TTCATATTCAAAAGGGAAAG+GGG | + | chr8.1:38289742-38289761 | None:intergenic | 30.0% | |
| TTCTGCAGTTTCTGTAAAAA+CGG | - | chr8.1:38290179-38290198 | MS.gene61042:intron | 30.0% | |
| TTGTACTAAATTGTGTGTTG+TGG | - | chr8.1:38288387-38288406 | MS.gene61042:intron | 30.0% | |
| ! | AAAGGACTAGTATAATGAAG+TGG | - | chr8.1:38289080-38289099 | MS.gene61042:CDS | 30.0% |
| ! | ATCAGAGTATATACCACTTT+TGG | - | chr8.1:38291260-38291279 | MS.gene61042:CDS | 30.0% |
| ! | ATTTTGCAGTGTGTTTTATC+AGG | + | chr8.1:38291046-38291065 | None:intergenic | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr8.1:38288701-38288720 | MS.gene61042:intron | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr8.1:38288720-38288701 | None:intergenic | 30.0% |
| ! | TCTCTATTTTCATGACACTT+TGG | + | chr8.1:38290715-38290734 | None:intergenic | 30.0% |
| !! | CAAAATTTACTGGTTTGTCT+TGG | + | chr8.1:38290940-38290959 | None:intergenic | 30.0% |
| !! | GTTAGCCTTTATATTTCCTT+TGG | - | chr8.1:38290436-38290455 | MS.gene61042:intron | 30.0% |
| !! | TATTCCCCTAGTAATTTGTT+AGG | - | chr8.1:38288792-38288811 | MS.gene61042:intron | 30.0% |
| !! | TCAGAGTATATACCACTTTT+GGG | - | chr8.1:38291261-38291280 | MS.gene61042:CDS | 30.0% |
| !! | TGTTTTTATAAGCTGCTTTG+GGG | - | chr8.1:38288238-38288257 | MS.gene61042:intron | 30.0% |
| !!! | AAGTAAGAAGCTATTTTAGC+AGG | - | chr8.1:38288518-38288537 | MS.gene61042:CDS | 30.0% |
| !!! | AGTAAGAAGCTATTTTAGCA+GGG | - | chr8.1:38288519-38288538 | MS.gene61042:CDS | 30.0% |
| !!! | GTTGTTTTTATAAGCTGCTT+TGG | - | chr8.1:38288236-38288255 | MS.gene61042:intron | 30.0% |
| !!! | TGCTACTTTTTCCATACTAA+AGG | - | chr8.1:38289062-38289081 | MS.gene61042:intron | 30.0% |
| AAAAAATAAGAAGGAACGGG+TGG | + | chr8.1:38290894-38290913 | None:intergenic | 35.0% | |
| AACAAACATATACGGCCAAA+AGG | + | chr8.1:38289019-38289038 | None:intergenic | 35.0% | |
| AACTGCTTAGTGTGCTAATT+TGG | - | chr8.1:38289584-38289603 | MS.gene61042:intron | 35.0% | |
| AAGAGAGTGAGATGTAAAAG+TGG | + | chr8.1:38289537-38289556 | None:intergenic | 35.0% | |
| ACTAATTCATGCAAAGACCA+TGG | + | chr8.1:38289639-38289658 | None:intergenic | 35.0% | |
| ACTTAATTGAGCTTATCTGC+TGG | + | chr8.1:38288350-38288369 | None:intergenic | 35.0% | |
| ACTTCACTTTCTATTAGGGT+GGG | + | chr8.1:38291142-38291161 | None:intergenic | 35.0% | |
| AGTACTTGAGAAAGCAGAAA+AGG | - | chr8.1:38289954-38289973 | MS.gene61042:intron | 35.0% | |
| ATACCCCTAATAGATAGTCA+AGG | + | chr8.1:38290286-38290305 | None:intergenic | 35.0% | |
| ATCCTAACAAAGGAAGAATC+TGG | - | chr8.1:38288825-38288844 | MS.gene61042:intron | 35.0% | |
| CAGTGAAGAAATTAGCTCAT+GGG | - | chr8.1:38287964-38287983 | MS.gene61042:intron | 35.0% | |
| CATCCTTGACTATCTATTAG+GGG | - | chr8.1:38290280-38290299 | MS.gene61042:intron | 35.0% | |
| GACTAGTATAATGAAGTGGA+AGG | - | chr8.1:38289084-38289103 | MS.gene61042:CDS | 35.0% | |
| GATCCAAGTTCTTTCTTAGT+GGG | - | chr8.1:38291291-38291310 | MS.gene61042:CDS | 35.0% | |
| GATCTAGATCCTTTCTCTAA+TGG | + | chr8.1:38288854-38288873 | None:intergenic | 35.0% | |
| GCTTTGCACGTGATATATAT+AGG | - | chr8.1:38290621-38290640 | MS.gene61042:intron | 35.0% | |
| GTTCTACTTTATGAGAGTAG+TGG | - | chr8.1:38289163-38289182 | MS.gene61042:CDS | 35.0% | |
| TACCCTAATCAACAACCAAA+AGG | + | chr8.1:38288926-38288945 | None:intergenic | 35.0% | |
| TCAGTGAAGAAATTAGCTCA+TGG | - | chr8.1:38287963-38287982 | MS.gene61042:intron | 35.0% | |
| TCATATCTCACCCTTTGTTA+TGG | + | chr8.1:38289812-38289831 | None:intergenic | 35.0% | |
| TGATCCAAGTTCTTTCTTAG+TGG | - | chr8.1:38291290-38291309 | MS.gene61042:CDS | 35.0% | |
| TTCCAGATTCTTCCTTTGTT+AGG | + | chr8.1:38288830-38288849 | None:intergenic | 35.0% | |
| TTTAACAAGGGCCATTTCAA+TGG | - | chr8.1:38290371-38290390 | MS.gene61042:intron | 35.0% | |
| ! | AAGTAACTGAAAGTATACCC+CGG | + | chr8.1:38290070-38290089 | None:intergenic | 35.0% |
| ! | GCATGAATGTGAGTTCATTT+TGG | - | chr8.1:38287937-38287956 | MS.gene61042:intron | 35.0% |
| ! | GTTGTTGATTAGGGTAACTT+AGG | - | chr8.1:38288930-38288949 | MS.gene61042:CDS | 35.0% |
| ! | TGTTACTTCTAATGGAATGG+TGG | - | chr8.1:38290958-38290977 | MS.gene61042:intron | 35.0% |
| !! | AATTGCAGGGAACTGATTTT+TGG | - | chr8.1:38290022-38290041 | MS.gene61042:intron | 35.0% |
| !! | ATGCCTTTTGGTTGTTGATT+AGG | - | chr8.1:38288920-38288939 | MS.gene61042:CDS | 35.0% |
| !! | CATTATCTTCTTGGTCTTAC+CGG | - | chr8.1:38289879-38289898 | MS.gene61042:intron | 35.0% |
| !! | GCATAAGTTTTGTCACTGTT+TGG | + | chr8.1:38288328-38288347 | None:intergenic | 35.0% |
| !! | TAAGTTTTGTCACTGTTTGG+CGG | + | chr8.1:38288325-38288344 | None:intergenic | 35.0% |
| !! | TGCCTTTTGGTTGTTGATTA+GGG | - | chr8.1:38288921-38288940 | MS.gene61042:CDS | 35.0% |
| !!! | AGTGGTAAGGTTTTGAGAAA+TGG | - | chr8.1:38288048-38288067 | MS.gene61042:intron | 35.0% |
| !!! | GTCTATTTTGACATGCCTTT+TGG | - | chr8.1:38288908-38288927 | MS.gene61042:CDS | 35.0% |
| ACGCCTCAATATCTTAATCG+AGG | - | chr8.1:38290797-38290816 | MS.gene61042:intron | 40.0% | |
| ACTCCCACTAAGAAAGAACT+TGG | + | chr8.1:38291297-38291316 | None:intergenic | 40.0% | |
| ACTGTACATTATACTCCCTC+CGG | + | chr8.1:38288723-38288742 | None:intergenic | 40.0% | |
| ATATTCAAAAGGGAAAGGGG+TGG | + | chr8.1:38289739-38289758 | None:intergenic | 40.0% | |
| ATTACTAGGGGAATATCTCG+AGG | + | chr8.1:38288787-38288806 | None:intergenic | 40.0% | |
| CACTTCACTTTCTATTAGGG+TGG | + | chr8.1:38291143-38291162 | None:intergenic | 40.0% | |
| GACATCACTTTGGCCATATT+TGG | - | chr8.1:38288154-38288173 | MS.gene61042:intron | 40.0% | |
| GAGTGAGATGTAAAAGTGGT+AGG | + | chr8.1:38289533-38289552 | None:intergenic | 40.0% | |
| GCTATTGGTAGGATATCAGA+TGG | - | chr8.1:38290569-38290588 | MS.gene61042:intron | 40.0% | |
| GGATCATTTGATCCCAAAAG+TGG | + | chr8.1:38291276-38291295 | None:intergenic | 40.0% | |
| GGATCTAGATCTCTTGACTT+CGG | - | chr8.1:38288863-38288882 | MS.gene61042:CDS | 40.0% | |
| TATTCAAAAGGGAAAGGGGT+GGG | + | chr8.1:38289738-38289757 | None:intergenic | 40.0% | |
| TCAAGGATGTTTATCTGCAG+AGG | + | chr8.1:38290269-38290288 | None:intergenic | 40.0% | |
| TCAGAACTGTCATCCATATG+TGG | + | chr8.1:38290665-38290684 | None:intergenic | 40.0% | |
| TGAAGAGAAGGATCACTAAG+CGG | + | chr8.1:38290245-38290264 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr8.1:38288705-38288724 | MS.gene61042:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr8.1:38288724-38288705 | None:intergenic | 40.0% | |
| TGCTTTAGTGTTCATGTCAG+AGG | - | chr8.1:38291237-38291256 | MS.gene61042:intron | 40.0% | |
| TGTGTGTTGTGGAACAATAG+TGG | - | chr8.1:38288398-38288417 | MS.gene61042:CDS | 40.0% | |
| TTACAGCTTGCAGATTTGAC+CGG | - | chr8.1:38290530-38290549 | MS.gene61042:intron | 40.0% | |
| TTCATGCTTGTGTGTGTTGT+TGG | - | chr8.1:38289555-38289574 | MS.gene61042:intron | 40.0% | |
| TTCCTTCATAGCAGAATCAG+TGG | + | chr8.1:38287830-38287849 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr8.1:38288704-38288723 | MS.gene61042:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr8.1:38288723-38288704 | None:intergenic | 40.0% | |
| TTGTGGGTATTTGCAGATAC+AGG | - | chr8.1:38290136-38290155 | MS.gene61042:intron | 40.0% | |
| TTTAGTACAAAGGGCCTGTT+TGG | + | chr8.1:38288377-38288396 | None:intergenic | 40.0% | |
| ! | ACTACATTCGGAAAGCACAT+GGG | - | chr8.1:38288468-38288487 | MS.gene61042:CDS | 40.0% |
| ! | AGGTCATATTTCAAGTGCAC+AGG | - | chr8.1:38289504-38289523 | MS.gene61042:intron | 40.0% |
| ! | AGTAACTGAAAGTATACCCC+GGG | + | chr8.1:38290069-38290088 | None:intergenic | 40.0% |
| ! | ATCTGGAACCCATTAGAGAA+AGG | - | chr8.1:38288842-38288861 | MS.gene61042:CDS | 40.0% |
| ! | CGACTAGTCAAAGAATTGCA+GGG | - | chr8.1:38290009-38290028 | MS.gene61042:intron | 40.0% |
| ! | TACTACATTCGGAAAGCACA+TGG | - | chr8.1:38288467-38288486 | MS.gene61042:CDS | 40.0% |
| ! | TCGACTAGTCAAAGAATTGC+AGG | - | chr8.1:38290008-38290027 | MS.gene61042:intron | 40.0% |
| !! | AGGATAGTCTTGTGACTGAT+CGG | - | chr8.1:38290827-38290846 | MS.gene61042:intron | 40.0% |
| !! | CAAGCATTGGGAGTAATACT+TGG | + | chr8.1:38289837-38289856 | None:intergenic | 40.0% |
| !! | TTTCATGACACTTTGGAGCA+TGG | + | chr8.1:38290708-38290727 | None:intergenic | 40.0% |
| AACGGACAAAAGCTGACAGA+AGG | + | chr8.1:38289042-38289061 | None:intergenic | 45.0% | |
| AATTTGAGGGGAGAGAGAGA+TGG | + | chr8.1:38289128-38289147 | None:intergenic | 45.0% | |
| ATTCAAAAGGGAAAGGGGTG+GGG | + | chr8.1:38289737-38289756 | None:intergenic | 45.0% | |
| CTTTCTATTAGGGTGGGAAG+AGG | + | chr8.1:38291136-38291155 | None:intergenic | 45.0% | |
| GGCGATATCTGACATCACTT+TGG | - | chr8.1:38288144-38288163 | MS.gene61042:intron | 45.0% | |
| TCTAGATCTCTTGACTTCGG+AGG | - | chr8.1:38288866-38288885 | MS.gene61042:CDS | 45.0% | |
| TGATGCGTTTGGCTATTGGT+AGG | - | chr8.1:38290558-38290577 | MS.gene61042:intron | 45.0% | |
| ! | CTACATTCGGAAAGCACATG+GGG | - | chr8.1:38288469-38288488 | MS.gene61042:CDS | 45.0% |
| ! | TATTTTTCATTTGGGGGGCG+TGG | - | chr8.1:38288024-38288043 | MS.gene61042:intron | 45.0% |
| !! | ATTTTTCATTTGGGGGGCGT+GGG | - | chr8.1:38288025-38288044 | MS.gene61042:intron | 45.0% |
| !! | TGCCACTGATTCTGCTATGA+AGG | - | chr8.1:38287825-38287844 | MS.gene61042:CDS | 45.0% |
| !! | AATAATATAATAAATAGTTA+AGG | + | chr8.1:38291003-38291022 | None:intergenic | 5.0% |
| !! | ATAATATAATAAATAGTTAA+GGG | + | chr8.1:38291002-38291021 | None:intergenic | 5.0% |
| AAAGTATACCCCGGGTGAGT+AGG | + | chr8.1:38290061-38290080 | None:intergenic | 50.0% | |
| AGTGGCAGTGTCAGTAGCAA+TGG | + | chr8.1:38287806-38287825 | None:intergenic | 50.0% | |
| ATCTGCAGAGGCTGAAGAGA+AGG | + | chr8.1:38290257-38290276 | None:intergenic | 50.0% | |
| CATAGCAGAATCAGTGGCAG+TGG | + | chr8.1:38287824-38287843 | None:intergenic | 50.0% | |
| GAGCTGATGCGTTTGGCTAT+TGG | - | chr8.1:38290554-38290573 | MS.gene61042:intron | 50.0% | |
| TACACTCGTCGTGCCACATA+TGG | - | chr8.1:38290649-38290668 | MS.gene61042:intron | 50.0% | |
| TTCAAAAGGGAAAGGGGTGG+GGG | + | chr8.1:38289736-38289755 | None:intergenic | 50.0% | |
| ! | ACCTTTTCCTCTACTCCCTC+CGG | - | chr8.1:38288570-38288589 | MS.gene61042:CDS | 50.0% |
| ! | GGAGGTGTAACTCAGATGCA+TGG | - | chr8.1:38288884-38288903 | MS.gene61042:CDS | 50.0% |
| ACCGGAGGGAGTAGAGGAAA+AGG | + | chr8.1:38288574-38288593 | None:intergenic | 55.0% | |
| AGCCAAACGCATCAGCTCTC+CGG | + | chr8.1:38290552-38290571 | None:intergenic | 55.0% | |
| AGGCAACATGCGTGTGACAC+AGG | + | chr8.1:38288767-38288786 | None:intergenic | 55.0% | |
| ATAGTGACCGGAGGGAGTAG+AGG | + | chr8.1:38288580-38288599 | None:intergenic | 55.0% | |
| CTAAGACGAGCCTACTCACC+CGG | - | chr8.1:38290048-38290067 | MS.gene61042:intron | 55.0% | |
| TAAGACGAGCCTACTCACCC+GGG | - | chr8.1:38290049-38290068 | MS.gene61042:intron | 55.0% | |
| ! | TGACTAGTCGAGACACGTGC+TGG | + | chr8.1:38289999-38290018 | None:intergenic | 55.0% |
| AAAGGGAAAGGGGTGGGGGT+AGG | + | chr8.1:38289732-38289751 | None:intergenic | 60.0% | |
| AAGACGAGCCTACTCACCCG+GGG | - | chr8.1:38290050-38290069 | MS.gene61042:intron | 60.0% | |
| AAGGGAAAGGGGTGGGGGTA+GGG | + | chr8.1:38289731-38289750 | None:intergenic | 60.0% | |
| GACCGGAGAGCTGATGCGTT+TGG | - | chr8.1:38290547-38290566 | MS.gene61042:intron | 60.0% | |
| AGGGAAAGGGGTGGGGGTAG+GGG | + | chr8.1:38289730-38289749 | None:intergenic | 65.0% | |
| ! | TCATTTGGGGGGCGTGGGAG+TGG | - | chr8.1:38288030-38288049 | MS.gene61042:intron | 65.0% |
| GGGAAAGGGGTGGGGGTAGG+GGG | + | chr8.1:38289729-38289748 | None:intergenic | 70.0% | |
| ! | TGGGGGGCGTGGGAGTGGTA+AGG | - | chr8.1:38288035-38288054 | MS.gene61042:intron | 70.0% |
| AGGGGTGGGGGTAGGGGGAG+AGG | + | chr8.1:38289724-38289743 | None:intergenic | 75.0% | |
| GGGGTGGGGGTAGGGGGAGA+GGG | + | chr8.1:38289723-38289742 | None:intergenic | 75.0% | |
| GTGGGGGTAGGGGGAGAGGG+AGG | + | chr8.1:38289720-38289739 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38287799 | 38291335 | 38287799 | ID=MS.gene61042 |
| chr8.1 | mRNA | 38287799 | 38291335 | 38287799 | ID=MS.gene61042.t1;Parent=MS.gene61042 |
| chr8.1 | exon | 38291249 | 38291335 | 38291249 | ID=MS.gene61042.t1.exon1;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38291249 | 38291335 | 38291249 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| chr8.1 | exon | 38289609 | 38289688 | 38289609 | ID=MS.gene61042.t1.exon2;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38289609 | 38289688 | 38289609 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| chr8.1 | exon | 38289063 | 38289204 | 38289063 | ID=MS.gene61042.t1.exon3;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38289063 | 38289204 | 38289063 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| chr8.1 | exon | 38288833 | 38288982 | 38288833 | ID=MS.gene61042.t1.exon4;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38288833 | 38288982 | 38288833 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| chr8.1 | exon | 38288397 | 38288598 | 38288397 | ID=MS.gene61042.t1.exon5;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38288397 | 38288598 | 38288397 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| chr8.1 | exon | 38287799 | 38287899 | 38287799 | ID=MS.gene61042.t1.exon6;Parent=MS.gene61042.t1 |
| chr8.1 | CDS | 38287799 | 38287899 | 38287799 | ID=cds.MS.gene61042.t1;Parent=MS.gene61042.t1 |
| Gene Sequence |
| Protein sequence |
