AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057736


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057736.t1 MTR_4g074230 98.438 384 4 1 1 382 1 384 0.0 770
MS.gene057736.t1 MTR_4g074230 98.754 321 4 0 1 321 1 321 0.0 658
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057736.t1 AT1G50300 73.270 318 72 5 10 324 5 312 3.66e-141 406
MS.gene057736.t1 AT1G50300 69.828 232 57 5 96 324 1 222 1.04e-79 246

Find 119 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGTTGGCTGAATATTT+TGG 0.202918 4.4:+36101594 MS.gene057736:CDS
GGAAAATTTGCTCCTTCTAA+TGG 0.205983 4.4:+36101531 MS.gene057736:CDS
GGGCGTGGCAGGGGACGTTC+TGG 0.220542 4.4:+36102395 MS.gene057736:CDS
CAGGAGGAGGTGGGCGTGGC+AGG 0.236816 4.4:+36102384 MS.gene057736:CDS
GCTGGTGCTTCTGGCGTTGC+AGG 0.246144 4.4:+36102365 MS.gene057736:CDS
GCACGCCCTGCTGGTGCTTC+TGG 0.253618 4.4:+36102356 MS.gene057736:CDS
GCACGAGTGCTTCCTGGTTC+AGG 0.255195 4.4:+36105580 MS.gene057736:CDS
GGTGCAACTGCAGGGCTATT+TGG 0.284772 4.4:+36102449 MS.gene057736:CDS
TGGTTCAGGGCGTGCTGGTT+GGG 0.289046 4.4:+36105594 MS.gene057736:CDS
AGTGATGTCAATGGTGTTAA+TGG 0.296562 4.4:+36102103 MS.gene057736:CDS
CTCTTGTTGCCATGGTTTGC+TGG 0.299452 4.4:-36102152 None:intergenic
GATTCCATGGCAAGCATTCC+TGG 0.304742 4.4:+36101510 None:intergenic
AGAGATCGAGACAGGGATTA+TGG 0.310355 4.4:+36106395 MS.gene057736:CDS
ATGTCTGCAACTTGCCTTAT+GGG 0.313152 4.4:+36101562 MS.gene057736:CDS
TGGAACCATTGGAGTTATAA+AGG 0.318896 4.4:+36101614 MS.gene057736:CDS
GGTGAGCTGTATGATGAATT+TGG 0.319502 4.4:+36105511 MS.gene057736:CDS
TGCTTTGCCTCTCCTCGTTA+TGG 0.322161 4.4:-36106346 None:intergenic
TATGTCTGCAACTTGCCTTA+TGG 0.328564 4.4:+36101561 MS.gene057736:CDS
CTGGTTCAGGGCGTGCTGGT+TGG 0.328885 4.4:+36105593 MS.gene057736:CDS
GGAGGAGGTGGGCGTGGCAG+GGG 0.330024 4.4:+36102386 MS.gene057736:CDS
GGACGTTCTGGGCCAGATGC+AGG 0.337930 4.4:+36102407 MS.gene057736:CDS
GAAAATTTGCTCCTTCTAAT+GGG 0.344168 4.4:+36101532 MS.gene057736:CDS
CGTCCAGCTGGTGCAACTGC+AGG 0.354707 4.4:+36102440 MS.gene057736:CDS
AGTTTCAGATTGCTGTGTTT+TGG 0.356059 4.4:-36105557 None:intergenic
GTACAGGGAAACCTAAAATA+TGG 0.363199 4.4:+36101855 MS.gene057736:CDS
CTGCTATTGCAGTATATGTT+TGG 0.371572 4.4:-36102036 None:intergenic
GAAACTGCACGAGTGCTTCC+TGG 0.382916 4.4:+36105574 MS.gene057736:CDS
GGCTATTTGGTCCCAATGAC+TGG 0.387107 4.4:+36102462 MS.gene057736:CDS
CACGAGTGCTTCCTGGTTCA+GGG 0.389853 4.4:+36105581 MS.gene057736:CDS
ACGTTCTGGGCCAGATGCAG+GGG 0.392528 4.4:+36102409 MS.gene057736:CDS
TCTGGCGTTGCAGGAGGAGG+TGG 0.403306 4.4:+36102374 MS.gene057736:CDS
GGCGTGGCAGGGGACGTTCT+GGG 0.411401 4.4:+36102396 MS.gene057736:CDS
GACGTTCTGGGCCAGATGCA+GGG 0.412571 4.4:+36102408 MS.gene057736:CDS
TGGCACGGAATTTCTTCTTA+AGG 0.415207 4.4:-36105537 None:intergenic
ATAGGTGTGGCAATATCAAT+TGG 0.418424 4.4:+36103589 MS.gene057736:intron
ACATCACTTTCAGTTTCCTC+TGG 0.421593 4.4:-36102088 None:intergenic
TGTGGAAGTGCACGCCCTGC+TGG 0.422493 4.4:+36102347 MS.gene057736:CDS
GTCGAAATAGAGAGAGGGAC+AGG 0.428254 4.4:+36106369 MS.gene057736:CDS
GGTTGGGAGGTTGAGGATCT+AGG 0.428724 4.4:+36105610 MS.gene057736:CDS
ACATCAGTACCAGCAACAAC+CGG 0.431949 4.4:-36102061 None:intergenic
CTTCCTGGTTCAGGGCGTGC+TGG 0.434352 4.4:+36105589 MS.gene057736:CDS
CATATCACAGACCTTGTATT+CGG 0.440223 4.4:-36102190 None:intergenic
AGGAGGAGGTGGGCGTGGCA+GGG 0.441158 4.4:+36102385 MS.gene057736:CDS
GCGTGCTGGTTGGGAGGTTG+AGG 0.442475 4.4:+36105603 MS.gene057736:CDS
ATAGCAGACCCGGTTGTTGC+TGG 0.443186 4.4:+36102052 MS.gene057736:CDS
CAATCGCCCTCTTGTTGCCA+TGG 0.443269 4.4:-36102160 None:intergenic
ACAGGGGAAGAGATCGAGAC+AGG 0.444481 4.4:+36106387 MS.gene057736:CDS
GTTGCAGGAGGAGGTGGGCG+TGG 0.450971 4.4:+36102380 MS.gene057736:CDS
GCAACGCCAGAAGCACCAGC+AGG 0.461187 4.4:-36102362 None:intergenic
GCTTCTGGCGTTGCAGGAGG+AGG 0.468468 4.4:+36102371 MS.gene057736:CDS
AGCCCTGCAGTTGCACCAGC+TGG 0.469244 4.4:-36102443 None:intergenic
TTTAATATCGGTGTCTACTT+CGG 0.473694 4.4:-36106430 None:intergenic
CAACCAGCACGCCCTGAACC+AGG 0.475347 4.4:-36105592 None:intergenic
GTCACAGTAGCATCTCCCTT+TGG 0.480691 4.4:-36101905 None:intergenic
CATGGCAACAAGAGGGCGAT+TGG 0.484158 4.4:+36102161 MS.gene057736:CDS
CATTGGACAAGGCCAGTCAT+TGG 0.485145 4.4:-36102474 None:intergenic
CAGGGATTATGGACGAGAAC+GGG 0.487630 4.4:+36106406 MS.gene057736:CDS
TTGCAGAAAGATAAACGTAC+AGG 0.490948 4.4:+36101839 MS.gene057736:intron
ACACCACCCTCGTTGTGCCC+AGG 0.493132 4.4:-36103651 None:intergenic
ATTGGACAAGGCCAGTCATT+GGG 0.494257 4.4:-36102473 None:intergenic
ATTTGCAATACAAACAAGCC+TGG 0.495239 4.4:+36103633 MS.gene057736:CDS
ATATTATCGTCGGTCCCATA+AGG 0.496822 4.4:-36101576 None:intergenic
GAGTCAAGGGACCGTTATGA+TGG 0.500996 4.4:+36106305 MS.gene057736:CDS
AGACAGAGGAAGAGAGTCAA+GGG 0.502977 4.4:+36106292 MS.gene057736:CDS
CTGGCGTTGCAGGAGGAGGT+GGG 0.503162 4.4:+36102375 MS.gene057736:CDS
TTAAACAGAGGAGGGCGAGC+TGG 0.505797 4.4:+36105344 MS.gene057736:intron
ATTGGATGTGTCCGAATACA+AGG 0.508039 4.4:+36102179 MS.gene057736:CDS
ACATAGATAGACCCATTAGA+AGG 0.508080 4.4:-36101543 None:intergenic
GTCCAGCTGGTGCAACTGCA+GGG 0.522936 4.4:+36102441 MS.gene057736:CDS
AGATGCTACTGTGACATATG+AGG 0.528491 4.4:+36101913 MS.gene057736:CDS
GGCACAACGAGGGTGGTGTA+AGG 0.528607 4.4:+36103655 MS.gene057736:CDS
TCGAAATAGAGAGAGGGACA+GGG 0.538004 4.4:+36106370 MS.gene057736:CDS
TTCAGGGCGTGCTGGTTGGG+AGG 0.541272 4.4:+36105597 MS.gene057736:CDS
TTACAAAGAGCTTGATGAAG+AGG 0.552917 4.4:+36105370 MS.gene057736:CDS
TAGGTGTGGCAATATCAATT+GGG 0.553457 4.4:+36103590 MS.gene057736:intron
CAGGGGAAGAGATCGAGACA+GGG 0.554781 4.4:+36106388 MS.gene057736:CDS
GTCAATGGTGTTAATGGAAG+AGG 0.554855 4.4:+36102109 MS.gene057736:CDS
CCATACCTTTATAACTCCAA+TGG 0.555137 4.4:-36101619 None:intergenic
GGTGTTAATGGAAGAGGCAG+AGG 0.555748 4.4:+36102115 MS.gene057736:CDS
GGTGCTTCTGGCGTTGCAGG+AGG 0.557530 4.4:+36102368 MS.gene057736:CDS
TTCTCTGCTCTCCATCATAA+CGG 0.558553 4.4:-36106316 None:intergenic
AAAGAGACGAATGAACCAAA+GGG 0.558771 4.4:+36101890 MS.gene057736:CDS
CTGCAGTTGCACCAGCTGGA+CGG 0.561682 4.4:-36102439 None:intergenic
CGGGGTGCGTGTAATCGTTG+TGG 0.570525 4.4:+36102329 MS.gene057736:CDS
CTGCCGTGGCTGCTGTTGAG+TGG 0.571241 4.4:+36101945 MS.gene057736:CDS
CGAAATAGAGAGAGGGACAG+GGG 0.581694 4.4:+36106371 MS.gene057736:CDS
GAGACAGAGGAAGAGAGTCA+AGG 0.587406 4.4:+36106291 MS.gene057736:CDS
ACAGGGATTATGGACGAGAA+CGG 0.593289 4.4:+36106405 MS.gene057736:CDS
AACAGAGGAGGGCGAGCTGG+AGG 0.593908 4.4:+36105347 MS.gene057736:intron
GTTGTTGCTGGTACTGATGT+CGG 0.595246 4.4:+36102064 MS.gene057736:CDS
TTCAGCCAACATATTATCGT+CGG 0.597239 4.4:-36101586 None:intergenic
AAACCACTCAACAGCAGCCA+CGG 0.598977 4.4:-36101948 None:intergenic
CAAAGAGACGAATGAACCAA+AGG 0.600702 4.4:+36101889 MS.gene057736:CDS
AAGCCTGGGCACAACGAGGG+TGG 0.605160 4.4:+36103648 MS.gene057736:CDS
TTTGCAATACAAACAAGCCT+GGG 0.606882 4.4:+36103634 MS.gene057736:CDS
CGTTCTGGGCCAGATGCAGG+GGG 0.607334 4.4:+36102410 MS.gene057736:CDS
TGGGACCGACGATAATATGT+TGG 0.612755 4.4:+36101581 MS.gene057736:CDS
CAACGCCAGAAGCACCAGCA+GGG 0.613406 4.4:-36102361 None:intergenic
CAGCAAACCATGGCAACAAG+AGG 0.614216 4.4:+36102153 MS.gene057736:CDS
GAAACTGAAAGTGATGTCAA+TGG 0.615536 4.4:+36102094 MS.gene057736:CDS
CATCAGTACCAGCAACAACC+GGG 0.615723 4.4:-36102060 None:intergenic
TTGAAGAAACTAAACGTCGT+AGG 0.624536 4.4:+36105396 MS.gene057736:CDS
ACAGAGACCATAACGAGGAG+AGG 0.627750 4.4:+36106339 MS.gene057736:CDS
ACAGCAGCCACGGCAGCATG+TGG 0.634443 4.4:-36101938 None:intergenic
AGCAAACCATGGCAACAAGA+GGG 0.635048 4.4:+36102154 MS.gene057736:CDS
TGAGGATCCACATGCTGCCG+TGG 0.639570 4.4:+36101931 MS.gene057736:CDS
AAAGCAGTCGAAATAGAGAG+AGG 0.640490 4.4:+36106363 MS.gene057736:CDS
AAGAAACTAAACGTCGTAGG+CGG 0.641204 4.4:+36105399 MS.gene057736:CDS
TGCAGAAAGATAAACGTACA+GGG 0.643687 4.4:+36101840 MS.gene057736:intron
AAGCAGTCGAAATAGAGAGA+GGG 0.643715 4.4:+36106364 MS.gene057736:CDS
TACAATTGGAGTTTATATAG+CGG 0.645043 4.4:+36101994 MS.gene057736:CDS
AACAAGCCTGGGCACAACGA+GGG 0.649708 4.4:+36103645 MS.gene057736:CDS
TGGTACTGATGTCGGACCAG+AGG 0.652584 4.4:+36102072 MS.gene057736:CDS
TTGATGCTTCCAGCAAACCA+TGG 0.653109 4.4:+36102143 MS.gene057736:CDS
ATATACTGCAATAGCAGACC+CGG 0.656715 4.4:+36102042 MS.gene057736:CDS
ACAAAATCGTACATTGGACA+AGG 0.668648 4.4:-36102485 None:intergenic
GCAATATCAATTGGGCAAAG+CGG 0.687100 4.4:+36103598 MS.gene057736:CDS
AAACAAGCCTGGGCACAACG+AGG 0.703032 4.4:+36103644 MS.gene057736:CDS
GAGAAACAGAGACCATAACG+AGG 0.713812 4.4:+36106334 MS.gene057736:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACAAAAAGATAAT+AGG - chr4.4:36105846-36105865 None:intergenic 10.0%
!! AATACATGTTATATATAAAT+TGG + chr4.4:36105450-36105469 MS.gene057736:intron 10.0%
!! ATTTATTAAAAAAATGTGAA+TGG - chr4.4:36105283-36105302 None:intergenic 10.0%
!!! TATATTTTAGTATTTCAATT+CGG - chr4.4:36104542-36104561 None:intergenic 10.0%
!! AGTATAAATAAATCAGATAA+CGG - chr4.4:36102531-36102550 None:intergenic 15.0%
!! ATGTATTTATGTAAAATGAA+GGG - chr4.4:36105246-36105265 None:intergenic 15.0%
!! GTAATAACTAATAAGTAATA+TGG + chr4.4:36104477-36104496 MS.gene057736:intron 15.0%
!! TATGTATTTATGTAAAATGA+AGG - chr4.4:36105247-36105266 None:intergenic 15.0%
!! TTAAAAATAAATGAAAACCA+AGG + chr4.4:36103780-36103799 MS.gene057736:intron 15.0%
!! TTTACATAAATACATACATA+CGG + chr4.4:36105251-36105270 MS.gene057736:intron 15.0%
!! AAATTAATACTCAATGCAAA+AGG - chr4.4:36102948-36102967 None:intergenic 20.0%
!! AATTAATACTCAATGCAAAA+GGG - chr4.4:36102947-36102966 None:intergenic 20.0%
!! ATAAACAGAACAACATAAAT+GGG - chr4.4:36101764-36101783 None:intergenic 20.0%
!! ATAATATGTGATTACTTGAA+TGG + chr4.4:36101661-36101680 MS.gene057736:intron 20.0%
!! ATCAACCTTAATTTATTGTT+GGG + chr4.4:36104797-36104816 MS.gene057736:intron 20.0%
!! CCTAAATAAATAGAGAAATA+AGG + chr4.4:36104442-36104461 MS.gene057736:intron 20.0%
!! TATCATATTCAATTTACTTG+TGG - chr4.4:36102729-36102748 None:intergenic 20.0%
!! TTACATAAATACATACATAC+GGG + chr4.4:36105252-36105271 MS.gene057736:intron 20.0%
!! TTTGTAAATTGGATATTTAC+AGG - chr4.4:36106133-36106152 None:intergenic 20.0%
!!! AAATATCTTTTGAATTAGAG+TGG + chr4.4:36104879-36104898 MS.gene057736:intron 20.0%
!!! ACAATTTTGAGTTATCATTA+TGG + chr4.4:36105781-36105800 MS.gene057736:intron 20.0%
!!! CCTTATTTCTCTATTTATTT+AGG - chr4.4:36104445-36104464 None:intergenic 20.0%
!!! CTTGTTTTGTTATATTATGT+TGG + chr4.4:36102679-36102698 MS.gene057736:intron 20.0%
!!! TAGTTCTCTATGAATTTTAA+AGG + chr4.4:36103003-36103022 MS.gene057736:intron 20.0%
!!! TATCTTTTACTACCATAAAA+GGG - chr4.4:36104041-36104060 None:intergenic 20.0%
!!! TCAATAACTGAAAAAGTATA+TGG - chr4.4:36105166-36105185 None:intergenic 20.0%
!!! TCATGATATAACCATATTTT+AGG - chr4.4:36101869-36101888 None:intergenic 20.0%
!!! TCTCTATTTATTTAGGATTA+GGG - chr4.4:36104438-36104457 None:intergenic 20.0%
!!! TTCTCTATTTATTTAGGATT+AGG - chr4.4:36104439-36104458 None:intergenic 20.0%
!!! TTCTGTAACATTTTGTAAAT+TGG - chr4.4:36106144-36106163 None:intergenic 20.0%
!!! TTTAACAACAAAGATTTTCA+TGG + chr4.4:36101968-36101987 MS.gene057736:CDS 20.0%
! AAAAACCAACCTCTATATAT+AGG + chr4.4:36104402-36104421 MS.gene057736:intron 25.0%
! AAAACCAACCTCTATATATA+GGG + chr4.4:36104403-36104422 MS.gene057736:intron 25.0%
! AAAACCCCAACAATAAATTA+AGG - chr4.4:36104805-36104824 None:intergenic 25.0%
! AAGTAATCACATATTATCGT+AGG - chr4.4:36101658-36101677 None:intergenic 25.0%
! ACATGAAATTATGAATCAGT+TGG + chr4.4:36106195-36106214 MS.gene057736:intron 25.0%
! AGAAGATTTAATGTATGACA+TGG + chr4.4:36104303-36104322 MS.gene057736:intron 25.0%
! AGATGATGAAATGATAGATT+GGG - chr4.4:36102976-36102995 None:intergenic 25.0%
! AGGTATCAATTAAAGAAAAC+AGG - chr4.4:36102841-36102860 None:intergenic 25.0%
! AGTATAATTTAGATTTGTGC+AGG - chr4.4:36106018-36106037 None:intergenic 25.0%
! ATTAATACTCAATGCAAAAG+GGG - chr4.4:36102946-36102965 None:intergenic 25.0%
! ATTTAATGTATGACATGGTT+TGG + chr4.4:36104308-36104327 MS.gene057736:intron 25.0%
! CATCAACCTTAATTTATTGT+TGG + chr4.4:36104796-36104815 MS.gene057736:intron 25.0%
! GATAAACAGAACAACATAAA+TGG - chr4.4:36101765-36101784 None:intergenic 25.0%
! TACAATTGGAGTTTATATAG+CGG + chr4.4:36101994-36102013 MS.gene057736:CDS 25.0%
! TACATTATGTTGATCTCAAA+TGG + chr4.4:36104223-36104242 MS.gene057736:intron 25.0%
! TAGATGATGAAATGATAGAT+TGG - chr4.4:36102977-36102996 None:intergenic 25.0%
! TAGATGATTTAGGTATATTG+TGG - chr4.4:36104650-36104669 None:intergenic 25.0%
! TCAACCTTAATTTATTGTTG+GGG + chr4.4:36104798-36104817 MS.gene057736:intron 25.0%
! TGAAATTACTTTGCTAACTT+GGG + chr4.4:36105310-36105329 MS.gene057736:intron 25.0%
! TGCACAAATCTAAATTATAC+TGG + chr4.4:36106017-36106036 MS.gene057736:intron 25.0%
! TTGAAATTACTTTGCTAACT+TGG + chr4.4:36105309-36105328 MS.gene057736:intron 25.0%
!! ACCATTTTCAAATACTTTCA+TGG + chr4.4:36105817-36105836 MS.gene057736:intron 25.0%
!! CTCTATTTATTTAGGATTAG+GGG - chr4.4:36104437-36104456 None:intergenic 25.0%
!! GTAAATTGAATATGATAGTG+AGG + chr4.4:36102732-36102751 MS.gene057736:intron 25.0%
!! GTAATACTTTTAATCCTTAG+AGG - chr4.4:36104206-36104225 None:intergenic 25.0%
!! GTATCTTTTACTACCATAAA+AGG - chr4.4:36104042-36104061 None:intergenic 25.0%
!! GTTACTTTCTTATTAAACAG+AGG + chr4.4:36105332-36105351 MS.gene057736:intron 25.0%
!! GTTTAGTCTTTAGATGATTT+AGG - chr4.4:36104660-36104679 None:intergenic 25.0%
!! TCCTTCAACTTTTTATGTAA+CGG + chr4.4:36104707-36104726 MS.gene057736:intron 25.0%
!! TGTTATATATAAATTGGCTC+TGG + chr4.4:36105456-36105475 MS.gene057736:intron 25.0%
!! TTTTATTAGTCGTTCCTTTT+TGG + chr4.4:36105863-36105882 MS.gene057736:intron 25.0%
!!! AATATGTTGGCTGAATATTT+TGG + chr4.4:36101594-36101613 MS.gene057736:CDS 25.0%
!!! ACCATGAAAGTATTTGAAAA+TGG - chr4.4:36105821-36105840 None:intergenic 25.0%
!!! ATGATTTTTTTCTTACTGTC+AGG + chr4.4:36105483-36105502 MS.gene057736:intron 25.0%
!!! ATGTTTTGAAATAGTATGCA+GGG - chr4.4:36105931-36105950 None:intergenic 25.0%
!!! TATGTTTTGAAATAGTATGC+AGG - chr4.4:36105932-36105951 None:intergenic 25.0%
!!! TTTGTCTTCTTTTTTGACAT+AGG + chr4.4:36103571-36103590 MS.gene057736:intron 25.0%
!!! TTTTACTTTTTGTTCCTCTA+AGG + chr4.4:36104189-36104208 MS.gene057736:intron 25.0%
AAATTCCAACATTTCGGATT+TGG - chr4.4:36105207-36105226 None:intergenic 30.0%
AACAGCCTATAAACACTAAT+AGG - chr4.4:36103119-36103138 None:intergenic 30.0%
AAGACTTGCAATATTGCAAT+GGG - chr4.4:36104844-36104863 None:intergenic 30.0%
AATGTGACAAAATCGTACAT+TGG - chr4.4:36102494-36102513 None:intergenic 30.0%
AATTGTAATCTAACAATGCC+AGG - chr4.4:36105767-36105786 None:intergenic 30.0%
ACAAAAACCAAGACAAAGAT+AGG - chr4.4:36104334-36104353 None:intergenic 30.0%
ACAATCTACATTGCATATCT+AGG - chr4.4:36103906-36103925 None:intergenic 30.0%
ACCGTTACATAAAAAGTTGA+AGG - chr4.4:36104711-36104730 None:intergenic 30.0%
ACCTAGAAATTCCAACATTT+CGG - chr4.4:36105213-36105232 None:intergenic 30.0%
ACTTTCTTATTAAACAGAGG+AGG + chr4.4:36105335-36105354 MS.gene057736:intron 30.0%
AGTTATCATTATGGCTATAG+CGG + chr4.4:36105790-36105809 MS.gene057736:intron 30.0%
AGTTCAATTGTTAAAGGTAG+AGG - chr4.4:36104588-36104607 None:intergenic 30.0%
ATCCTTACATGAGCAAATTA+TGG - chr4.4:36106083-36106102 None:intergenic 30.0%
ATTGTAATCTAACAATGCCA+GGG - chr4.4:36105766-36105785 None:intergenic 30.0%
CACTAATAGTATGTACTTGA+AGG - chr4.4:36103704-36103723 None:intergenic 30.0%
CATCTCAATATTGATATGTG+AGG + chr4.4:36104275-36104294 MS.gene057736:intron 30.0%
CGGTATTATAAACAGTAAGT+TGG - chr4.4:36106234-36106253 None:intergenic 30.0%
CTTACTGTTTATAATACCGA+TGG + chr4.4:36106235-36106254 MS.gene057736:intron 30.0%
CTTATACCTGACATTAAACT+TGG + chr4.4:36103470-36103489 MS.gene057736:intron 30.0%
CTTTCTTATTAAACAGAGGA+GGG + chr4.4:36105336-36105355 MS.gene057736:intron 30.0%
GAGGATAGTTCAATTGTTAA+AGG - chr4.4:36104594-36104613 None:intergenic 30.0%
GTTCATCATACAAGATAGAT+AGG - chr4.4:36104980-36104999 None:intergenic 30.0%
TAAGACTTGCAATATTGCAA+TGG - chr4.4:36104845-36104864 None:intergenic 30.0%
TAAGGATATGTAGAGATTCT+AGG + chr4.4:36106096-36106115 MS.gene057736:intron 30.0%
TACAGCCTATTAGTGTTTAT+AGG + chr4.4:36103111-36103130 MS.gene057736:intron 30.0%
TCAATTCCAAGTTTAATGTC+AGG - chr4.4:36103479-36103498 None:intergenic 30.0%
TCAGTTGACCTTATGTAAAT+TGG - chr4.4:36103078-36103097 None:intergenic 30.0%
TCTACCATTTGTTCTATCAT+TGG + chr4.4:36104680-36104699 MS.gene057736:intron 30.0%
TCTTGTATCCCTATATATAG+AGG - chr4.4:36104414-36104433 None:intergenic 30.0%
TGACCTTATGTAAATTGGAA+AGG - chr4.4:36103073-36103092 None:intergenic 30.0%
TGGAAACATGATTTGAAAAC+AGG - chr4.4:36105108-36105127 None:intergenic 30.0%
TTGCAAAAAGAATGCCAAAA+AGG - chr4.4:36105880-36105899 None:intergenic 30.0%
TTGCAAAGTGAGGTTTATTT+GGG + chr4.4:36101698-36101717 MS.gene057736:intron 30.0%
TTGCAATATTGCAAGTCTTA+TGG + chr4.4:36104845-36104864 MS.gene057736:intron 30.0%
! ATCTAAATTATACTGGCTGT+TGG + chr4.4:36106024-36106043 MS.gene057736:intron 30.0%
! CTGAAAAAGTATATGGAAAC+AGG - chr4.4:36105159-36105178 None:intergenic 30.0%
! GAAAATTTGCTCCTTCTAAT+GGG + chr4.4:36101532-36101551 MS.gene057736:CDS 30.0%
! GATTTTCATGGCAATACAAT+TGG + chr4.4:36101980-36101999 MS.gene057736:CDS 30.0%
! TTGATGATCACATATTAGAG+TGG - chr4.4:36106176-36106195 None:intergenic 30.0%
!! AATCAGATAACGGAAAAATG+TGG - chr4.4:36102521-36102540 None:intergenic 30.0%
!! ATCAGATAACGGAAAAATGT+GGG - chr4.4:36102520-36102539 None:intergenic 30.0%
!!! AAAATTCAGTTTTGTTAGCC+GGG + chr4.4:36103873-36103892 MS.gene057736:intron 30.0%
!!! CAAAATTCAGTTTTGTTAGC+CGG + chr4.4:36103872-36103891 MS.gene057736:intron 30.0%
!!! GAAAATATTTTGATGCCAAG+TGG + chr4.4:36104010-36104029 MS.gene057736:intron 30.0%
!!! GAGATTTGTTAATTTTGCGA+AGG + chr4.4:36102893-36102912 MS.gene057736:intron 30.0%
!!! GTGAAACTACATTTTTTCGT+TGG + chr4.4:36103739-36103758 MS.gene057736:intron 30.0%
AAAGAGAAGTTCAGTAGATG+AGG - chr4.4:36103222-36103241 None:intergenic 35.0%
AAAGAGACGAATGAACCAAA+GGG + chr4.4:36101890-36101909 MS.gene057736:CDS 35.0%
AAGTTACAAAGTTCACCTCA+AGG - chr4.4:36103156-36103175 None:intergenic 35.0%
ACAAAATCGTACATTGGACA+AGG - chr4.4:36102488-36102507 None:intergenic 35.0%
ACAAATTACAGCATTCACCT+TGG - chr4.4:36103800-36103819 None:intergenic 35.0%
ACATAGATAGACCCATTAGA+AGG - chr4.4:36101546-36101565 None:intergenic 35.0%
ACATTGCAAAGTGCAAAATC+AGG - chr4.4:36102864-36102883 None:intergenic 35.0%
AGAAGTTCAAAATAGCCACT+TGG - chr4.4:36103945-36103964 None:intergenic 35.0%
AGACTTGCAATATTGCAATG+GGG - chr4.4:36104843-36104862 None:intergenic 35.0%
AGCTCCAATGATAGAACAAA+TGG - chr4.4:36104687-36104706 None:intergenic 35.0%
AGGAATGAAAGACAGGTATA+TGG - chr4.4:36105088-36105107 None:intergenic 35.0%
ATAGGTGTGGCAATATCAAT+TGG + chr4.4:36103589-36103608 MS.gene057736:intron 35.0%
ATATGATGATCATTGTGAGC+AGG - chr4.4:36104103-36104122 None:intergenic 35.0%
ATGAAATGATAGATTGGGTC+GGG - chr4.4:36102971-36102990 None:intergenic 35.0%
ATGAGCAAATTATGGCAACA+TGG - chr4.4:36106075-36106094 None:intergenic 35.0%
ATTTGCAATACAAACAAGCC+TGG + chr4.4:36103633-36103652 MS.gene057736:CDS 35.0%
CAAATAAACCTCACTTTGCA+AGG - chr4.4:36101699-36101718 None:intergenic 35.0%
CAATTGTTAAAGGTAGAGGA+AGG - chr4.4:36104584-36104603 None:intergenic 35.0%
CATACTCTTGTGAATGAACA+TGG + chr4.4:36102794-36102813 MS.gene057736:intron 35.0%
CATATCACAGACCTTGTATT+CGG - chr4.4:36102193-36102212 None:intergenic 35.0%
CCAGTTGTTGTAGCAAATTT+AGG + chr4.4:36103294-36103313 MS.gene057736:intron 35.0%
CCATACCTTTATAACTCCAA+TGG - chr4.4:36101622-36101641 None:intergenic 35.0%
CCATTGGAGTTATAAAGGTA+TGG + chr4.4:36101619-36101638 MS.gene057736:intron 35.0%
CTATCTTGTATGATGAACCT+GGG + chr4.4:36104982-36105001 MS.gene057736:intron 35.0%
CTGCTATTGCAGTATATGTT+TGG - chr4.4:36102039-36102058 None:intergenic 35.0%
CTTGCAAAGTGAGGTTTATT+TGG + chr4.4:36101697-36101716 MS.gene057736:intron 35.0%
GAAACTGAAAGTGATGTCAA+TGG + chr4.4:36102094-36102113 MS.gene057736:CDS 35.0%
GATGAAATGATAGATTGGGT+CGG - chr4.4:36102972-36102991 None:intergenic 35.0%
GCTCTGCTTAACTAAACATT+AGG + chr4.4:36103428-36103447 MS.gene057736:intron 35.0%
GGTTAAATGAAATGGACAGA+TGG - chr4.4:36104933-36104952 None:intergenic 35.0%
GTACAGGGAAACCTAAAATA+TGG + chr4.4:36101855-36101874 MS.gene057736:CDS 35.0%
GTATCCCTATATATAGAGGT+TGG - chr4.4:36104410-36104429 None:intergenic 35.0%
GTGAAAAATGAGTGATAGTC+TGG - chr4.4:36101805-36101824 None:intergenic 35.0%
GTTATCATTATGGCTATAGC+GGG + chr4.4:36105791-36105810 MS.gene057736:intron 35.0%
TAGGTGTGGCAATATCAATT+GGG + chr4.4:36103590-36103609 MS.gene057736:intron 35.0%
TATCTTGTATGATGAACCTG+GGG + chr4.4:36104983-36105002 MS.gene057736:intron 35.0%
TATGCAATGTAGATTGTCAG+CGG + chr4.4:36103909-36103928 MS.gene057736:intron 35.0%
TATTATGTTGGACATAGTGC+TGG + chr4.4:36102691-36102710 MS.gene057736:intron 35.0%
TCAATGATGAGATAGAGACA+TGG - chr4.4:36105128-36105147 None:intergenic 35.0%
TCCGAAATGTTGGAATTTCT+AGG + chr4.4:36105209-36105228 MS.gene057736:intron 35.0%
TCTATCTTGTATGATGAACC+TGG + chr4.4:36104981-36105000 MS.gene057736:intron 35.0%
TGAAAACAGGAATGAAAGAC+AGG - chr4.4:36105095-36105114 None:intergenic 35.0%
TGATGTCATAAAGATGACGA+TGG - chr4.4:36104781-36104800 None:intergenic 35.0%
TGCAGAAAGATAAACGTACA+GGG + chr4.4:36101840-36101859 MS.gene057736:intron 35.0%
TGCAGACAGGTTAAATGAAA+TGG - chr4.4:36104941-36104960 None:intergenic 35.0%
TGGAACCATTGGAGTTATAA+AGG + chr4.4:36101614-36101633 MS.gene057736:CDS 35.0%
TGGCCTTTCCAATTTACATA+AGG + chr4.4:36103067-36103086 MS.gene057736:intron 35.0%
TGTTTATAATACCGATGGCA+GGG + chr4.4:36106240-36106259 MS.gene057736:intron 35.0%
TTACAAAGAGCTTGATGAAG+AGG + chr4.4:36105370-36105389 MS.gene057736:CDS 35.0%
TTCAGCCAACATATTATCGT+CGG - chr4.4:36101589-36101608 None:intergenic 35.0%
TTCTTCCAAATCCGAAATGT+TGG + chr4.4:36105199-36105218 MS.gene057736:intron 35.0%
TTGAAGAAACTAAACGTCGT+AGG + chr4.4:36105396-36105415 MS.gene057736:CDS 35.0%
TTGATTGAGTGCAAATCTAG+TGG + chr4.4:36103047-36103066 MS.gene057736:intron 35.0%
TTGCAGAAAGATAAACGTAC+AGG + chr4.4:36101839-36101858 MS.gene057736:intron 35.0%
TTTAACCTGTCTGCATCTAT+TGG + chr4.4:36104946-36104965 MS.gene057736:intron 35.0%
TTTGCAATACAAACAAGCCT+GGG + chr4.4:36103634-36103653 MS.gene057736:CDS 35.0%
TTTGTTGAAGTCATGTGGTT+TGG + chr4.4:36104349-36104368 MS.gene057736:intron 35.0%
! AGTGATGTCAATGGTGTTAA+TGG + chr4.4:36102103-36102122 MS.gene057736:CDS 35.0%
! AGTTTCAGATTGCTGTGTTT+TGG - chr4.4:36105560-36105579 None:intergenic 35.0%
! GATTTTGCACTTTGCAATGT+TGG + chr4.4:36102864-36102883 MS.gene057736:intron 35.0%
! GGAAAATTTGCTCCTTCTAA+TGG + chr4.4:36101531-36101550 MS.gene057736:CDS 35.0%
! TAAGTACTGTATAACAGCCT+CGG - chr4.4:36103454-36103473 None:intergenic 35.0%
! TATAGCGGAGTCAAAAAACA+AGG + chr4.4:36102009-36102028 MS.gene057736:CDS 35.0%
! TATATTTGCTAGTTGCTTGC+CGG + chr4.4:36105976-36105995 MS.gene057736:intron 35.0%
! TGATAATGATGATGACCTTG+AGG + chr4.4:36103138-36103157 MS.gene057736:intron 35.0%
! TGGTTTTTGTTGAAGTCATG+TGG + chr4.4:36104344-36104363 MS.gene057736:intron 35.0%
! TTAGAAGGAGCAAATTTTCC+AGG - chr4.4:36101531-36101550 None:intergenic 35.0%
! TTTGGCATTCTTTTTGCAAC+TGG + chr4.4:36105881-36105900 MS.gene057736:intron 35.0%
! TTTTCTTACTGTCAGGATGA+TGG + chr4.4:36105490-36105509 MS.gene057736:intron 35.0%
!! AATGTGAACTTTGCTTTTCG+GGG + chr4.4:36102311-36102330 MS.gene057736:CDS 35.0%
!! CCTAAATTTGCTACAACAAC+TGG - chr4.4:36103297-36103316 None:intergenic 35.0%
!! CGAATGTGAACTTTGCTTTT+CGG + chr4.4:36102309-36102328 MS.gene057736:CDS 35.0%
!! GAATGTGAACTTTGCTTTTC+GGG + chr4.4:36102310-36102329 MS.gene057736:CDS 35.0%
!! TCAGATAACGGAAAAATGTG+GGG - chr4.4:36102519-36102538 None:intergenic 35.0%
!! TGCCATAATTTGCTCATGTA+AGG + chr4.4:36106078-36106097 MS.gene057736:intron 35.0%
!!! CTTCTTTTTTGACATAGGTG+TGG + chr4.4:36103576-36103595 MS.gene057736:intron 35.0%
!!! GCTGAATATTTTGGAACCAT+TGG + chr4.4:36101603-36101622 MS.gene057736:CDS 35.0%
AAAGCAGTCGAAATAGAGAG+AGG + chr4.4:36106363-36106382 MS.gene057736:CDS 40.0%
AAGAAACTAAACGTCGTAGG+CGG + chr4.4:36105399-36105418 MS.gene057736:CDS 40.0%
AAGCAGTCGAAATAGAGAGA+GGG + chr4.4:36106364-36106383 MS.gene057736:CDS 40.0%
AAGTTCAGTAGATGAGGACA+AGG - chr4.4:36103216-36103235 None:intergenic 40.0%
ACAAACCAATAGATGCAGAC+AGG - chr4.4:36104954-36104973 None:intergenic 40.0%
ACAGAAAAAAGCAGAGACAG+AGG + chr4.4:36106278-36106297 MS.gene057736:CDS 40.0%
ACATCACTTTCAGTTTCCTC+TGG - chr4.4:36102091-36102110 None:intergenic 40.0%
AGATGCTACTGTGACATATG+AGG + chr4.4:36101913-36101932 MS.gene057736:CDS 40.0%
AGTAACCCGATTGATGAAAC+TGG - chr4.4:36102654-36102673 None:intergenic 40.0%
ATATACTGCAATAGCAGACC+CGG + chr4.4:36102042-36102061 MS.gene057736:CDS 40.0%
ATATTATCGTCGGTCCCATA+AGG - chr4.4:36101579-36101598 None:intergenic 40.0%
ATATTGTGGAGAAGACCTGT+TGG - chr4.4:36104636-36104655 None:intergenic 40.0%
ATGCAAAAGGGGACTCAATT+TGG - chr4.4:36102935-36102954 None:intergenic 40.0%
ATGTCTGCAACTTGCCTTAT+GGG + chr4.4:36101562-36101581 MS.gene057736:CDS 40.0%
ATTGGATGTGTCCGAATACA+AGG + chr4.4:36102179-36102198 MS.gene057736:CDS 40.0%
ATTGTACACCGTTGGAACTT+GGG + chr4.4:36103323-36103342 MS.gene057736:intron 40.0%
CAAAGAGACGAATGAACCAA+AGG + chr4.4:36101889-36101908 MS.gene057736:CDS 40.0%
CAAGGTCTGTGATATGAGAT+TGG + chr4.4:36102197-36102216 MS.gene057736:intron 40.0%
CCTAGCTTAGAGGTGAAAAT+AGG - chr4.4:36105036-36105055 None:intergenic 40.0%
CTCTTTATCAATGCTCCAAC+AGG + chr4.4:36104618-36104637 MS.gene057736:intron 40.0%
CTGTTTATAATACCGATGGC+AGG + chr4.4:36106239-36106258 MS.gene057736:intron 40.0%
CTTAACTAAACATTAGGCCG+AGG + chr4.4:36103434-36103453 MS.gene057736:intron 40.0%
GCAATATCAATTGGGCAAAG+CGG + chr4.4:36103598-36103617 MS.gene057736:CDS 40.0%
GTAACCCGATTGATGAAACT+GGG - chr4.4:36102653-36102672 None:intergenic 40.0%
TATGTCTGCAACTTGCCTTA+TGG + chr4.4:36101561-36101580 MS.gene057736:CDS 40.0%
TCTTGTGAATGAACATGGCT+CGG + chr4.4:36102799-36102818 MS.gene057736:intron 40.0%
TGCCGCAAAATCACATACAT+TGG - chr4.4:36104169-36104188 None:intergenic 40.0%
TGGCACGGAATTTCTTCTTA+AGG - chr4.4:36105540-36105559 None:intergenic 40.0%
TTCTCTGCTCTCCATCATAA+CGG - chr4.4:36106319-36106338 None:intergenic 40.0%
TTGCAAAGTGCAAAATCAGG+AGG - chr4.4:36102861-36102880 None:intergenic 40.0%
! CAAGTTGGCTATACGATATG+GGG + chr4.4:36103355-36103374 MS.gene057736:intron 40.0%
! CCTATTTTCACCTCTAAGCT+AGG + chr4.4:36105033-36105052 MS.gene057736:intron 40.0%
! CGCCAATGTATGTGATTTTG+CGG + chr4.4:36104164-36104183 MS.gene057736:intron 40.0%
! GCAAGTTGGCTATACGATAT+GGG + chr4.4:36103354-36103373 MS.gene057736:intron 40.0%
! GTCAATGGTGTTAATGGAAG+AGG + chr4.4:36102109-36102128 MS.gene057736:CDS 40.0%
! TCTGTCTCTTTTGTCCTTGT+GGG + chr4.4:36103244-36103263 MS.gene057736:intron 40.0%
! TGCAAGTTGGCTATACGATA+TGG + chr4.4:36103353-36103372 MS.gene057736:intron 40.0%
! TTTTCTGTCCTTGCAAAGTG+AGG + chr4.4:36101688-36101707 MS.gene057736:intron 40.0%
! TTTTGATCCTGAACCACACT+TGG + chr4.4:36104906-36104925 MS.gene057736:intron 40.0%
!! AGCATTGATAAAGAGAGTGG+AGG - chr4.4:36104613-36104632 None:intergenic 40.0%
!! GTGGCAGTTGATTTTGCATT+TGG + chr4.4:36103269-36103288 MS.gene057736:intron 40.0%
!! TGGAGCATTGATAAAGAGAG+TGG - chr4.4:36104616-36104635 None:intergenic 40.0%
AACAATGCCAGGGAACATGT+GGG - chr4.4:36105756-36105775 None:intergenic 45.0%
ACAGGGATTATGGACGAGAA+CGG + chr4.4:36106405-36106424 MS.gene057736:CDS 45.0%
ACATCAGTACCAGCAACAAC+CGG - chr4.4:36102064-36102083 None:intergenic 45.0%
AGACAGAGGAAGAGAGTCAA+GGG + chr4.4:36106292-36106311 MS.gene057736:CDS 45.0%
AGAGATCGAGACAGGGATTA+TGG + chr4.4:36106395-36106414 MS.gene057736:CDS 45.0%
AGCAAACCATGGCAACAAGA+GGG + chr4.4:36102154-36102173 MS.gene057736:CDS 45.0%
AGCTAATGCTGCAACTTTGC+AGG + chr4.4:36105684-36105703 MS.gene057736:intron 45.0%
ATTAGTGACACCTCTGATGC+AGG + chr4.4:36103717-36103736 MS.gene057736:intron 45.0%
ATTGCAATGGGGCTGAATAC+AGG - chr4.4:36104832-36104851 None:intergenic 45.0%
ATTGGACAAGGCCAGTCATT+GGG - chr4.4:36102476-36102495 None:intergenic 45.0%
CAATGTAGATTGTCAGCGGT+AGG + chr4.4:36103913-36103932 MS.gene057736:intron 45.0%
CACAAGGACAAAAGAGACAG+AGG - chr4.4:36103245-36103264 None:intergenic 45.0%
CATAAAAGGGACTCTCCACT+TGG - chr4.4:36104028-36104047 None:intergenic 45.0%
CGTTGCCCAGTTTCATCAAT+CGG + chr4.4:36102645-36102664 MS.gene057736:intron 45.0%
GAGAAACAGAGACCATAACG+AGG + chr4.4:36106334-36106353 MS.gene057736:CDS 45.0%
GATTGTACACCGTTGGAACT+TGG + chr4.4:36103322-36103341 MS.gene057736:intron 45.0%
GCTATACGATATGGGGCTTA+TGG + chr4.4:36103362-36103381 MS.gene057736:intron 45.0%
GGAAGCAATCATCATGTGAG+AGG + chr4.4:36103024-36103043 MS.gene057736:intron 45.0%
GGACTAAGATTGTACACCGT+TGG + chr4.4:36103315-36103334 MS.gene057736:intron 45.0%
GGTTTGGCCTATCTTTGTCT+TGG + chr4.4:36104324-36104343 MS.gene057736:intron 45.0%
GTTGCCCAGTTTCATCAATC+GGG + chr4.4:36102646-36102665 MS.gene057736:intron 45.0%
TAACAATGCCAGGGAACATG+TGG - chr4.4:36105757-36105776 None:intergenic 45.0%
TAGATTGTCAGCGGTAGGAT+AGG + chr4.4:36103918-36103937 MS.gene057736:intron 45.0%
TCGAAATAGAGAGAGGGACA+GGG + chr4.4:36106370-36106389 MS.gene057736:CDS 45.0%
TGGAATTGACCTGCATGATG+TGG + chr4.4:36103490-36103509 MS.gene057736:intron 45.0%
TGGGACCGACGATAATATGT+TGG + chr4.4:36101581-36101600 MS.gene057736:CDS 45.0%
TGTAGTTTCACCTGCATCAG+AGG - chr4.4:36103730-36103749 None:intergenic 45.0%
TTGATGCTTCCAGCAAACCA+TGG + chr4.4:36102143-36102162 MS.gene057736:CDS 45.0%
TTGTACAAGCCACATCATGC+AGG - chr4.4:36103502-36103521 None:intergenic 45.0%
! AACATGTGGGGAAAGTGTGA+TGG - chr4.4:36105743-36105762 None:intergenic 45.0%
! CAAGTGGAGAGTCCCTTTTA+TGG + chr4.4:36104026-36104045 MS.gene057736:intron 45.0%
! CTCTGTCTCTTTTGTCCTTG+TGG + chr4.4:36103243-36103262 MS.gene057736:intron 45.0%
! GCATATCTAGGATACTGACC+CGG - chr4.4:36103894-36103913 None:intergenic 45.0%
!! AAGTGTGATGGACAATGGGA+AGG - chr4.4:36105731-36105750 None:intergenic 45.0%
!! AGTGTGATGGACAATGGGAA+GGG - chr4.4:36105730-36105749 None:intergenic 45.0%
!! CTTTGTTGTTAACCTCTCCC+CGG + chr4.4:36103182-36103201 MS.gene057736:intron 45.0%
!! GGGAAAGTGTGATGGACAAT+GGG - chr4.4:36105735-36105754 None:intergenic 45.0%
!! GTTGTTGCTGGTACTGATGT+CGG + chr4.4:36102064-36102083 MS.gene057736:CDS 45.0%
!! TCTTTTGTCCTTGTGGGTTG+TGG + chr4.4:36103250-36103269 MS.gene057736:intron 45.0%
!! TTTGTTGTTAACCTCTCCCC+GGG + chr4.4:36103183-36103202 MS.gene057736:intron 45.0%
!!! CAGATTGCTGTGTTTTGGCA+CGG - chr4.4:36105555-36105574 None:intergenic 45.0%
!! TAAAAAATAAATAAAAACTA+GGG - chr4.4:36103847-36103866 None:intergenic 5.0%
!! TTAAAAAATAAATAAAAACT+AGG - chr4.4:36103848-36103867 None:intergenic 5.0%
!!! GTTTTTATTTATTTTTTAAT+TGG + chr4.4:36103849-36103868 MS.gene057736:intron 5.0%
AAACCACTCAACAGCAGCCA+CGG - chr4.4:36101951-36101970 None:intergenic 50.0%
AACCTGGGGTGCATAAACTC+TGG + chr4.4:36104997-36105016 MS.gene057736:intron 50.0%
ACAATGCCAGGGAACATGTG+GGG - chr4.4:36105755-36105774 None:intergenic 50.0%
ACAGAGACCATAACGAGGAG+AGG + chr4.4:36106339-36106358 MS.gene057736:CDS 50.0%
ACCACACTCCCAAGTTCCAA+CGG - chr4.4:36103334-36103353 None:intergenic 50.0%
AGATGGTCCAAGTGTGGTTC+AGG - chr4.4:36104916-36104935 None:intergenic 50.0%
AGGACCATCAAACTCGAGTC+CGG - chr4.4:36105998-36106017 None:intergenic 50.0%
ATCAACTGCCACAACCCACA+AGG - chr4.4:36103261-36103280 None:intergenic 50.0%
ATGGACAGATGGTCCAAGTG+TGG - chr4.4:36104922-36104941 None:intergenic 50.0%
CAGCAAACCATGGCAACAAG+AGG + chr4.4:36102153-36102172 MS.gene057736:CDS 50.0%
CAGGGATTATGGACGAGAAC+GGG + chr4.4:36106406-36106425 MS.gene057736:CDS 50.0%
CATCAGTACCAGCAACAACC+GGG - chr4.4:36102063-36102082 None:intergenic 50.0%
CATTGGACAAGGCCAGTCAT+TGG - chr4.4:36102477-36102496 None:intergenic 50.0%
CGAAATAGAGAGAGGGACAG+GGG + chr4.4:36106371-36106390 MS.gene057736:CDS 50.0%
GAGACAGAGGAAGAGAGTCA+AGG + chr4.4:36106291-36106310 MS.gene057736:CDS 50.0%
GAGTCAAGGGACCGTTATGA+TGG + chr4.4:36106305-36106324 MS.gene057736:CDS 50.0%
GCGCACAAAACCTAGCTTAG+AGG - chr4.4:36105046-36105065 None:intergenic 50.0%
GGCTATTTGGTCCCAATGAC+TGG + chr4.4:36102462-36102481 MS.gene057736:CDS 50.0%
GGTGTTAATGGAAGAGGCAG+AGG + chr4.4:36102115-36102134 MS.gene057736:CDS 50.0%
GTCACAGTAGCATCTCCCTT+TGG - chr4.4:36101908-36101927 None:intergenic 50.0%
GTCGAAATAGAGAGAGGGAC+AGG + chr4.4:36106369-36106388 MS.gene057736:CDS 50.0%
TACCAGAGTTTATGCACCCC+AGG - chr4.4:36105002-36105021 None:intergenic 50.0%
TCTCTGTCAATCCCTGCCAT+CGG - chr4.4:36106254-36106273 None:intergenic 50.0%
TGCTTTGCCTCTCCTCGTTA+TGG - chr4.4:36106349-36106368 None:intergenic 50.0%
! CTCTTGTTGCCATGGTTTGC+TGG - chr4.4:36102155-36102174 None:intergenic 50.0%
!! GGGGAAAGTGTGATGGACAA+TGG - chr4.4:36105736-36105755 None:intergenic 50.0%
!! GTGTGATGGACAATGGGAAG+GGG - chr4.4:36105729-36105748 None:intergenic 50.0%
!! TGTGATGGACAATGGGAAGG+GGG - chr4.4:36105728-36105747 None:intergenic 50.0%
AAACAAGCCTGGGCACAACG+AGG + chr4.4:36103644-36103663 MS.gene057736:CDS 55.0%
AACAAGCCTGGGCACAACGA+GGG + chr4.4:36103645-36103664 MS.gene057736:CDS 55.0%
ACAGGGGAAGAGATCGAGAC+AGG + chr4.4:36106387-36106406 MS.gene057736:CDS 55.0%
ACCGTTGGAACTTGGGAGTG+TGG + chr4.4:36103330-36103349 MS.gene057736:intron 55.0%
AGCGGTAGGATAGGACCAAG+TGG + chr4.4:36103927-36103946 MS.gene057736:intron 55.0%
ATAGCAGACCCGGTTGTTGC+TGG + chr4.4:36102052-36102071 MS.gene057736:CDS 55.0%
CAATCGCCCTCTTGTTGCCA+TGG - chr4.4:36102163-36102182 None:intergenic 55.0%
CACGAGTGCTTCCTGGTTCA+GGG + chr4.4:36105581-36105600 MS.gene057736:CDS 55.0%
CACTTTCCCCACATGTTCCC+TGG + chr4.4:36105746-36105765 MS.gene057736:intron 55.0%
CAGGGGAAGAGATCGAGACA+GGG + chr4.4:36106388-36106407 MS.gene057736:CDS 55.0%
CATGGCAACAAGAGGGCGAT+TGG + chr4.4:36102161-36102180 MS.gene057736:CDS 55.0%
CTTGCCGGACTCGAGTTTGA+TGG + chr4.4:36105991-36106010 MS.gene057736:intron 55.0%
GAAACTGCACGAGTGCTTCC+TGG + chr4.4:36105574-36105593 MS.gene057736:CDS 55.0%
GGTGCAACTGCAGGGCTATT+TGG + chr4.4:36102449-36102468 MS.gene057736:CDS 55.0%
GGTTGGGAGGTTGAGGATCT+AGG + chr4.4:36105610-36105629 MS.gene057736:CDS 55.0%
TGAGGACAAGGACCAGAACC+CGG - chr4.4:36103204-36103223 None:intergenic 55.0%
TTAAACAGAGGAGGGCGAGC+TGG + chr4.4:36105344-36105363 MS.gene057736:intron 55.0%
! CTTGGGAGTGTGGTGCAAGT+TGG + chr4.4:36103340-36103359 MS.gene057736:intron 55.0%
!! TGGTACTGATGTCGGACCAG+AGG + chr4.4:36102072-36102091 MS.gene057736:CDS 55.0%
AGGACAAGGACCAGAACCCG+GGG - chr4.4:36103202-36103221 None:intergenic 60.0%
CGGGGTGCGTGTAATCGTTG+TGG + chr4.4:36102329-36102348 MS.gene057736:CDS 60.0%
CTGCAGTTGCACCAGCTGGA+CGG - chr4.4:36102442-36102461 None:intergenic 60.0%
GAGGACAAGGACCAGAACCC+GGG - chr4.4:36103203-36103222 None:intergenic 60.0%
GCACGAGTGCTTCCTGGTTC+AGG + chr4.4:36105580-36105599 MS.gene057736:CDS 60.0%
GGCACAACGAGGGTGGTGTA+AGG + chr4.4:36103655-36103674 MS.gene057736:CDS 60.0%
GTCCAGCTGGTGCAACTGCA+GGG + chr4.4:36102441-36102460 MS.gene057736:CDS 60.0%
GTTAACCTCTCCCCGGGTTC+TGG + chr4.4:36103189-36103208 MS.gene057736:intron 60.0%
TGAGGATCCACATGCTGCCG+TGG + chr4.4:36101931-36101950 MS.gene057736:CDS 60.0%
! ACGTTCTGGGCCAGATGCAG+GGG + chr4.4:36102409-36102428 MS.gene057736:CDS 60.0%
! GACGTTCTGGGCCAGATGCA+GGG + chr4.4:36102408-36102427 MS.gene057736:CDS 60.0%
!! CAACGCCAGAAGCACCAGCA+GGG - chr4.4:36102364-36102383 None:intergenic 60.0%
!! TGGTTCAGGGCGTGCTGGTT+GGG + chr4.4:36105594-36105613 MS.gene057736:CDS 60.0%
AACAGAGGAGGGCGAGCTGG+AGG + chr4.4:36105347-36105366 MS.gene057736:intron 65.0%
AAGCCTGGGCACAACGAGGG+TGG + chr4.4:36103648-36103667 MS.gene057736:CDS 65.0%
AAGGACCAGAACCCGGGGAG+AGG - chr4.4:36103197-36103216 None:intergenic 65.0%
ACACCACCCTCGTTGTGCCC+AGG - chr4.4:36103654-36103673 None:intergenic 65.0%
ACAGCAGCCACGGCAGCATG+TGG - chr4.4:36101941-36101960 None:intergenic 65.0%
AGCCCTGCAGTTGCACCAGC+TGG - chr4.4:36102446-36102465 None:intergenic 65.0%
CAACCAGCACGCCCTGAACC+AGG - chr4.4:36105595-36105614 None:intergenic 65.0%
CGGCCAATACCCCCTGCATC+TGG - chr4.4:36102422-36102441 None:intergenic 65.0%
CGTCCAGCTGGTGCAACTGC+AGG + chr4.4:36102440-36102459 MS.gene057736:CDS 65.0%
CTGCCGTGGCTGCTGTTGAG+TGG + chr4.4:36101945-36101964 MS.gene057736:CDS 65.0%
CTGGCGTTGCAGGAGGAGGT+GGG + chr4.4:36102375-36102394 MS.gene057736:CDS 65.0%
CTTCCTGGTTCAGGGCGTGC+TGG + chr4.4:36105589-36105608 MS.gene057736:CDS 65.0%
GCTGGTGCTTCTGGCGTTGC+AGG + chr4.4:36102365-36102384 MS.gene057736:CDS 65.0%
GCTTCTGGCGTTGCAGGAGG+AGG + chr4.4:36102371-36102390 MS.gene057736:CDS 65.0%
GGTGCTTCTGGCGTTGCAGG+AGG + chr4.4:36102368-36102387 MS.gene057736:CDS 65.0%
TCTGGCGTTGCAGGAGGAGG+TGG + chr4.4:36102374-36102393 MS.gene057736:CDS 65.0%
! CGTTCTGGGCCAGATGCAGG+GGG + chr4.4:36102410-36102429 MS.gene057736:CDS 65.0%
! CTGGTTCAGGGCGTGCTGGT+TGG + chr4.4:36105593-36105612 MS.gene057736:CDS 65.0%
! GGACGTTCTGGGCCAGATGC+AGG + chr4.4:36102407-36102426 MS.gene057736:CDS 65.0%
! GGGCCAGATGCAGGGGGTAT+TGG + chr4.4:36102416-36102435 MS.gene057736:CDS 65.0%
! TGTGGAAGTGCACGCCCTGC+TGG + chr4.4:36102347-36102366 MS.gene057736:CDS 65.0%
!! GCAACGCCAGAAGCACCAGC+AGG - chr4.4:36102365-36102384 None:intergenic 65.0%
!! GCGTGCTGGTTGGGAGGTTG+AGG + chr4.4:36105603-36105622 MS.gene057736:CDS 65.0%
!! TTCAGGGCGTGCTGGTTGGG+AGG + chr4.4:36105597-36105616 MS.gene057736:CDS 65.0%
AGGAGGAGGTGGGCGTGGCA+GGG + chr4.4:36102385-36102404 MS.gene057736:CDS 70.0%
GCACGCCCTGCTGGTGCTTC+TGG + chr4.4:36102356-36102375 MS.gene057736:CDS 70.0%
GGCGTGGCAGGGGACGTTCT+GGG + chr4.4:36102396-36102415 MS.gene057736:CDS 70.0%
GTTGCAGGAGGAGGTGGGCG+TGG + chr4.4:36102380-36102399 MS.gene057736:CDS 70.0%
!! GGGGGTATTGGCCGTCCAGC+TGG + chr4.4:36102428-36102447 MS.gene057736:CDS 70.0%
CAGGAGGAGGTGGGCGTGGC+AGG + chr4.4:36102384-36102403 MS.gene057736:CDS 75.0%
GGAGGAGGTGGGCGTGGCAG+GGG + chr4.4:36102386-36102405 MS.gene057736:CDS 75.0%
GGGCGTGGCAGGGGACGTTC+TGG + chr4.4:36102395-36102414 MS.gene057736:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 36101516 36106451 36101516 ID=MS.gene057736
chr4.4 mRNA 36101516 36106451 36101516 ID=MS.gene057736.t1;Parent=MS.gene057736
chr4.4 exon 36101516 36101635 36101516 ID=MS.gene057736.t1.exon1;Parent=MS.gene057736.t1
chr4.4 CDS 36101516 36101635 36101516 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36101845 36102200 36101845 ID=MS.gene057736.t1.exon2;Parent=MS.gene057736.t1
chr4.4 CDS 36101845 36102200 36101845 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36102304 36102495 36102304 ID=MS.gene057736.t1.exon3;Parent=MS.gene057736.t1
chr4.4 CDS 36102304 36102495 36102304 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36103593 36103676 36103593 ID=MS.gene057736.t1.exon4;Parent=MS.gene057736.t1
chr4.4 CDS 36103593 36103676 36103593 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36105352 36105430 36105352 ID=MS.gene057736.t1.exon5;Parent=MS.gene057736.t1
chr4.4 CDS 36105352 36105430 36105352 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36105505 36105631 36105505 ID=MS.gene057736.t1.exon6;Parent=MS.gene057736.t1
chr4.4 CDS 36105505 36105631 36105505 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
chr4.4 exon 36106261 36106451 36106261 ID=MS.gene057736.t1.exon7;Parent=MS.gene057736.t1
chr4.4 CDS 36106261 36106451 36106261 ID=cds.MS.gene057736.t1;Parent=MS.gene057736.t1
Gene Sequence

>MS.gene057736

ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTCTGCAACTTGCCTTATGGGACCGACGATAATATGTTGGCTGAATATTTTGGAACCATTGGAGTTATAAAGGTATGGAGTCTGCAACTATCCTACGATAATATGTGATTACTTGAATGGTTTTTTTTCTGTCCTTGCAAAGTGAGGTTTATTTGGGATTATCAAATGATTGATTTGCTTTTTGTTGCATTTTGTTTCCCATTTATGTTGTTCTGTTTATCTGTGACGCGTTCTATTTCCAGACTATCACTCATTTTTCACTTACAATTCATGTTTTGCAGAAAGATAAACGTACAGGGAAACCTAAAATATGGTTATATCATGACAAAGAGACGAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGACCCGGTTGTTGCTGGTACTGATGTCGGACCAGAGGAAACTGAAAGTGATGTCAATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGGTCTGTGATATGAGATTGGTGAGCAGCTCTTTCTTGCTCTTTTACACATTGTTTCAGTCATAGTTTTTTGCAGACAGAATAACACATTTTTTTGTCATAGCAGTTGCTCGAATGTGAACTTTGCTTTTCGGGGTGCGTGTAATCGTTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGGCGTGGCAGGGGACGTTCTGGGCCAGATGCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGGCTATTTGGTCCCAATGACTGGCCTTGTCCAATGTACGATTTTGTCACATTATCCCCACATTTTTCCGTTATCTGATTTATTTATACTTATTTTTTATTTTAAATTGTATTTCTCAATTCTAATTCACTATTTTAGAGATAACAATTAACACGTATATATTTCTTATTAAGTTTGATAAACACGTTGCCCAGTTTCATCAATCGGGTTACTCATTACTTGTTTTGTTATATTATGTTGGACATAGTGCTGGCGAACAGTTAAGCCACAAGTAAATTGAATATGATAGTGAGGTGAGATATATGTTTGTATATGTATAATACACAAAGACAACATACTCTTGTGAATGAACATGGCTCGGAGAAGAGTTAATTATACCTGTTTTCTTTAATTGATACCTCCTGATTTTGCACTTTGCAATGTTGGCTGCATGAGATTTGTTAATTTTGCGAAGGAAATTTTATAAACTAGCCAAATTGAGTCCCCTTTTGCATTGAGTATTAATTTCCCGACCCAATCTATCATTTCATCATCTACTATTCTAGTTCTCTATGAATTTTAAAGGAAGCAATCATCATGTGAGAGGTTGATTGAGTGCAAATCTAGTGGCCTTTCCAATTTACATAAGGTCAACTGATTCTGTTACAATTTACAGCCTATTAGTGTTTATAGGCTGTTGATAATGATGATGACCTTGAGGTGAACTTTGTAACTTCTTTGACTTTGTTGTTAACCTCTCCCCGGGTTCTGGTCCTTGTCCTCATCTACTGAACTTCTCTTTCCTCTGTCTCTTTTGTCCTTGTGGGTTGTGGCAGTTGATTTTGCATTTGGTTCCAGTTGTTGTAGCAAATTTAGGACTAAGATTGTACACCGTTGGAACTTGGGAGTGTGGTGCAAGTTGGCTATACGATATGGGGCTTATGGTCAGTTATATTATCACTAGTTTTATTCATTTTGAATGAGTCTTGCTCTGCTTAACTAAACATTAGGCCGAGGCTGTTATACAGTACTTATACCTGACATTAAACTTGGAATTGACCTGCATGATGTGGCTTGTACAATTTTTTTTTTTATTTTTCAATGAAAATTTTAACGTAATTATTTATCTTTTTTGTCTTCTTTTTTGACATAGGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAACAAGCCTGGGCACAACGAGGGTGGTGTAAGGTATTGTATTTAATTCTTTGTATTCCTTCAAGTACATACTATTAGTGACACCTCTGATGCAGGTGAAACTACATTTTTTCGTTGGAAAATTTATTAAACATTTTTAAAAATAAATGAAAACCAAGGTGAATGCTGTAATTTGTAAAGCAAATATTAGAAAATGAATTCCCTAGTTTTTATTTATTTTTTAATTGGCAAAATTCAGTTTTGTTAGCCGGGTCAGTATCCTAGATATGCAATGTAGATTGTCAGCGGTAGGATAGGACCAAGTGGCTATTTTGAACTTCTCTGTTCAATTATAATTATAATTAAAATATAACACGTGATTGAAAAGAAAATATTTTGATGCCAAGTGGAGAGTCCCTTTTATGGTAGTAAAAGATACGCTTCTATGTCTTATTGTGTGTTAAATTCATATGCAATCCTGCTCACAATGATCATCATATTCACTTAATATATGAGCTAAACATGATTTTCTTTTTCAATACGCCAATGTATGTGATTTTGCGGCATTTTACTTTTTGTTCCTCTAAGGATTAAAAGTATTACATTATGTTGATCTCAAATGGAGTATCTGTTTATTTTCTTATTTGTTAAACATCTCAATATTGATATGTGAGGATAAAAGAAGATTTAATGTATGACATGGTTTGGCCTATCTTTGTCTTGGTTTTTGTTGAAGTCATGTGGTTTGGATAAAAGAAGATAATAATAAAGACTGAACTAAAAACCAACCTCTATATATAGGGATACAAGACCCCTAATCCTAAATAAATAGAGAAATAAGGAAACAAATCATAGTAATAACTAATAAGTAATATGGAAACTAATGCTATGATGTGCTCTAAGATTAAAAATCAATCCGAATTGAAATACTAAAATATATCTTCTTATATTCTATCAGCCTTCCTCTACCTTTAACAATTGAACTATCCTCCACTCTCTTTATCAATGCTCCAACAGGTCTTCTCCACAATATACCTAAATCATCTAAAGACTAAACTCTACCATTTGTTCTATCATTGGAGCTTCCTTCAACTTTTTATGTAACGGTTTCTTTCATAATTATATCATGTATCGTGTAACTACTAATTGATTCTGCCATCGTCATCTTTATGACATCAACCTTAATTTATTGTTGGGGTTTTACTGCCTGTATTCAGCCCCATTGCAATATTGCAAGTCTTATGGCTGTGTGATAAAAATATCTTTTGAATTAGAGTGGAACTTTTTGATCCTGAACCACACTTGGACCATCTGTCCATTTCATTTAACCTGTCTGCATCTATTGGTTTGTCAACCTATCTATCTTGTATGATGAACCTGGGGTGCATAAACTCTGGTATAGTATATTATCCTATTTTCACCTCTAAGCTAGGTTTTGTGCGCATCATGCTAAACTTTCATTCCATATACCTGTCTTTCATTCCTGTTTTCAAATCATGTTTCCATGTCTCTATCTCATCATTGATTTCAAATCCTGTTTCCATATACTTTTTCAGTTATTGACTTTAATTTTTTTTTCTTCCAAATCCGAAATGTTGGAATTTCTAGGTCGTAATCTCTCCCTTCATTTTACATAAATACATACATACGGGCACTACCATTCACATTTTTTTAATAAATTGTGTTTTGAAATTACTTTGCTAACTTGGGTTACTTTCTTATTAAACAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAAGCTGAAGTAAGATTGATTTTAAGACAATACATGTTATATATAAATTGGCTCTGGTTTTATGATTTTTTTCTTACTGTCAGGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAACTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGATCTAGGTAATGTTGCACTTCTAGCATGATCTGTTGTCTGTAAATTGTTTTCAAAGCAAGCTAATGCTGCAACTTTGCAGGCTTGTCAAGCTCTACAATCCCCCTTCCCATTGTCCATCACACTTTCCCCACATGTTCCCTGGCATTGTTAGATTACAATTTTGAGTTATCATTATGGCTATAGCGGGACTACCATTTTCAAATACTTTCATGGTCTCCTATTATCTTTTTGTTATTTTTTATTAGTCGTTCCTTTTTGGCATTCTTTTTGCAACTGGTTTATTGCAACTTTTTTATTCAAACCCTGCATACTATTTCAAAACATATTCTTAGATGTCTTAATGTATTTATATATTTGCTAGTTGCTTGCCGGACTCGAGTTTGATGGTCCTGCACAAATCTAAATTATACTGGCTGTTGGTTTTTAAGTATTTTAAAAGAATATACCATGTTGCCATAATTTGCTCATGTAAGGATATGTAGAGATTCTAGGTTCAAGTTATGCCTGTAAATATCCAATTTACAAAATGTTACAGAAGTTATTGTGCCACTCTAATATGTGATCATCAACATGAAATTATGAATCAGTTGGACATGCTCTCTAACCAACTTACTGTTTATAATACCGATGGCAGGGATTGACAGAGATGCTACAGAAAAAAGCAGAGACAGAGGAAGAGAGTCAAGGGACCGTTATGATGGAGAGCAGAGAAACAGAGACCATAACGAGGAGAGGCAAAGCAGTCGAAATAGAGAGAGGGACAGGGGAAGAGATCGAGACAGGGATTATGGACGAGAACGGGACCGAAGTAGACACCGATATTAA

Protein sequence

>MS.gene057736.t1

MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGKPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIADPVVAGTDVGPEETESDVNGVNGRGRGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGPDAGGIGRPAGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSETARVLPGSGRAGWEVEDLGIDRDATEKSRDRGRESRDRYDGEQRNRDHNEERQSSRNRERDRGRDRDRDYGRERDRSRHRY