Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63677.t1 | KEH32796.1 | 88 | 133 | 14 | 1 | 9 | 141 | 118 | 248 | 2.50E-60 | 241.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63677.t1 | F4I933 | 65.3 | 124 | 41 | 1 | 20 | 141 | 109 | 232 | 1.1e-40 | 167.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63677.t1 | A0A072UTY1 | 88.0 | 133 | 14 | 1 | 9 | 141 | 118 | 248 | 1.8e-60 | 241.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene63677 | 0.801296 | 9.63E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene63677 | 0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene63677 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene63677 | 0.804902 | 1.73E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene63677 | 0.808776 | 2.62E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene63677 | 0.80977 | 1.61E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene63677 | 0.800762 | 1.24E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene63677 | 0.802126 | 6.50E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene63677 | 0.808423 | 3.12E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene63677 | 0.812431 | 4.25E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene63677 | 0.815033 | 1.14E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene63677 | 0.818894 | 1.54E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene63677 | 0.82675 | 2.29E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene63677 | 0.820583 | 6.35E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene63677 | 0.82042 | 6.93E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene63677 | 0.808609 | 2.85E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene63677 | 0.810576 | 1.08E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene63677 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene63677 | 0.816444 | 5.51E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene63677 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene63677 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene63677 | 0.813851 | 2.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63677.t1 | MTR_3g006290 | 87.970 | 133 | 14 | 1 | 9 | 141 | 118 | 248 | 9.13e-81 | 244 |
| MS.gene63677.t1 | MTR_3g006290 | 87.970 | 133 | 14 | 1 | 9 | 141 | 118 | 248 | 3.09e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63677.t1 | AT1G17850 | 65.323 | 124 | 41 | 1 | 20 | 141 | 109 | 232 | 2.79e-49 | 164 |
| MS.gene63677.t1 | AT1G17850 | 63.710 | 124 | 41 | 2 | 20 | 141 | 109 | 230 | 6.49e-46 | 155 |
Find 33 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAAGGTAGATTCATTT+TGG | 0.192565 | 3.3:-1879010 | None:intergenic |
| TGACAGAGATTACATTATAT+TGG | 0.286731 | 3.3:+1878958 | MS.gene63677:CDS |
| TTATACCGCAACTTCAATAC+TGG | 0.321060 | 3.3:-1878513 | None:intergenic |
| TTCATTTGTCTGCAGTTTGA+AGG | 0.373195 | 3.3:+1878821 | MS.gene63677:intron |
| ATTATATTGGATGTGAGAAA+TGG | 0.413285 | 3.3:+1878971 | MS.gene63677:CDS |
| GATATATTTCTACAGTATAG+TGG | 0.434778 | 3.3:+1878387 | MS.gene63677:intron |
| ACGCTATGGCATATGTCAAC+TGG | 0.445467 | 3.3:+1878421 | MS.gene63677:CDS |
| AGATTCTTCCATTGATGTCT+AGG | 0.448549 | 3.3:-1878233 | None:intergenic |
| TGGCTTACCTGTACTAAAGA+TGG | 0.464207 | 3.3:-1878537 | None:intergenic |
| TGCCTTTAGCTCCTTCAGAA+TGG | 0.469052 | 3.3:+1878888 | MS.gene63677:CDS |
| AGGATCGAGCAATGGAAGAT+TGG | 0.470747 | 3.3:-1878852 | None:intergenic |
| AAAGGCAATGCCCGCATTGA+AGG | 0.472830 | 3.3:-1878872 | None:intergenic |
| TTTCTTTAATCTGCATCCTA+AGG | 0.476445 | 3.3:+1875257 | MS.gene63677:CDS |
| CTCCATTCTGAAGGAGCTAA+AGG | 0.478685 | 3.3:-1878890 | None:intergenic |
| ATTAAAGAAATTAATCAGCT+TGG | 0.485126 | 3.3:-1875244 | None:intergenic |
| AATATAATGTAATCTCTGTC+AGG | 0.499827 | 3.3:-1878956 | None:intergenic |
| CCTTTCCAGTATTGAAGTTG+CGG | 0.501981 | 3.3:+1878508 | MS.gene63677:CDS |
| ACTGGATAAAAGAGGATAGC+AGG | 0.510047 | 3.3:+1878439 | MS.gene63677:CDS |
| TGAACAAGGGATTAATGCAC+AGG | 0.520270 | 3.3:+1878263 | MS.gene63677:CDS |
| ATTGCTCGATCCTTCAATGC+GGG | 0.535673 | 3.3:+1878862 | MS.gene63677:CDS |
| CGCATTGAAGGATCGAGCAA+TGG | 0.552955 | 3.3:-1878860 | None:intergenic |
| ATTTGTCTGCAGTTTGAAGG+TGG | 0.555821 | 3.3:+1878824 | MS.gene63677:intron |
| GTATAAACCATCTTTAGTAC+AGG | 0.566195 | 3.3:+1878530 | MS.gene63677:CDS |
| AGAATCTATTTGAATGAACA+AGG | 0.567800 | 3.3:+1878249 | MS.gene63677:CDS |
| TGGGCCATCGAAAGACGCTA+TGG | 0.580004 | 3.3:+1878407 | MS.gene63677:CDS |
| ATATATTTCTACAGTATAGT+GGG | 0.580248 | 3.3:+1878388 | MS.gene63677:intron |
| TGACAGGGCCTAGACATCAA+TGG | 0.580491 | 3.3:+1878225 | MS.gene63677:intron |
| ATATGTCAACTGGATAAAAG+AGG | 0.594088 | 3.3:+1878431 | MS.gene63677:CDS |
| TATGCCATAGCGTCTTTCGA+TGG | 0.600373 | 3.3:-1878411 | None:intergenic |
| CCGCAACTTCAATACTGGAA+AGG | 0.605516 | 3.3:-1878508 | None:intergenic |
| TTGATGGAGATATTTGAACC+AGG | 0.620449 | 3.3:-1878473 | None:intergenic |
| GAATCTATTTGAATGAACAA+GGG | 0.655210 | 3.3:+1878250 | MS.gene63677:CDS |
| CATTGCTCGATCCTTCAATG+CGG | 0.678485 | 3.3:+1878861 | MS.gene63677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTATTTTATTTT+TGG | + | chr3.3:1877752-1877771 | MS.gene63677:intron | 0.0% |
| !!! | GTAACATTTTTTTTTATTTA+GGG | + | chr3.3:1875279-1875298 | MS.gene63677:intron | 10.0% |
| !! | AATAAAAATCTATAACAAAC+TGG | + | chr3.3:1877971-1877990 | MS.gene63677:intron | 15.0% |
| !! | ACATTCAATTATTTAATTGA+TGG | + | chr3.3:1877875-1877894 | MS.gene63677:intron | 15.0% |
| !! | ATAAAAAAAAATGTTACCTT+AGG | - | chr3.3:1875276-1875295 | None:intergenic | 15.0% |
| !! | ATAAATTGGATATTAAACAT+AGG | - | chr3.3:1876402-1876421 | None:intergenic | 15.0% |
| !! | CTATTTATCATATAATGTAA+CGG | - | chr3.3:1878766-1878785 | None:intergenic | 15.0% |
| !!! | AACGAAGAATTTTAATATTA+GGG | - | chr3.3:1876872-1876891 | None:intergenic | 15.0% |
| !!! | GGTAACATTTTTTTTTATTT+AGG | + | chr3.3:1875278-1875297 | MS.gene63677:intron | 15.0% |
| !!! | TAACGAAGAATTTTAATATT+AGG | - | chr3.3:1876873-1876892 | None:intergenic | 15.0% |
| !! | AATTTGAATTTGAAGAAGAA+AGG | - | chr3.3:1877527-1877546 | None:intergenic | 20.0% |
| !! | ACAATAAGTATGTATATTGA+AGG | - | chr3.3:1876912-1876931 | None:intergenic | 20.0% |
| !! | ATTAAAGAAATTAATCAGCT+TGG | - | chr3.3:1875247-1875266 | None:intergenic | 20.0% |
| !! | ATTTGAATTTGAAGAAGAAA+GGG | - | chr3.3:1877526-1877545 | None:intergenic | 20.0% |
| !! | CATCACTTATTAACAAAATT+GGG | - | chr3.3:1876358-1876377 | None:intergenic | 20.0% |
| !! | CGTTAAATGTGTTAAAATTA+TGG | - | chr3.3:1876585-1876604 | None:intergenic | 20.0% |
| !! | GATAAAGTTAAAAGTAAAAG+TGG | - | chr3.3:1878615-1878634 | None:intergenic | 20.0% |
| !! | GTTATATTATATATCTGACA+AGG | + | chr3.3:1875432-1875451 | MS.gene63677:intron | 20.0% |
| !! | TAGAAATATATCATATCAGA+AGG | - | chr3.3:1878379-1878398 | None:intergenic | 20.0% |
| !! | TCATCACTTATTAACAAAAT+TGG | - | chr3.3:1876359-1876378 | None:intergenic | 20.0% |
| !! | TGATAGAGAAATAAGAATAA+AGG | - | chr3.3:1877201-1877220 | None:intergenic | 20.0% |
| !!! | ATATATTTCTACAGTATAGT+GGG | + | chr3.3:1878388-1878407 | MS.gene63677:intron | 20.0% |
| !!! | CTTTTAAAAGACTTTTTTCT+AGG | + | chr3.3:1875797-1875816 | MS.gene63677:intron | 20.0% |
| !!! | GAAAAAAGTCTTTTAAAAGA+TGG | - | chr3.3:1875796-1875815 | None:intergenic | 20.0% |
| !!! | GCATACAATTTTGTATAAAT+TGG | - | chr3.3:1876416-1876435 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTATCTTAATAG+TGG | + | chr3.3:1875318-1875337 | MS.gene63677:intron | 20.0% |
| !!! | TTAAACTTTTGATACATTGA+GGG | + | chr3.3:1877059-1877078 | MS.gene63677:intron | 20.0% |
| !!! | TTACTTTTAACTTTATCTCA+AGG | + | chr3.3:1878618-1878637 | MS.gene63677:intron | 20.0% |
| !!! | TTGAAATTTTGATTCATTGA+AGG | - | chr3.3:1876809-1876828 | None:intergenic | 20.0% |
| !!! | TTTAAACTTTTGATACATTG+AGG | + | chr3.3:1877058-1877077 | MS.gene63677:intron | 20.0% |
| ! | AACAAACTAAAAGTTACACA+TGG | - | chr3.3:1878206-1878225 | None:intergenic | 25.0% |
| ! | AATATAATGTAATCTCTGTC+AGG | - | chr3.3:1878959-1878978 | None:intergenic | 25.0% |
| ! | AATGATTAGAAGAGAATGAA+TGG | - | chr3.3:1877225-1877244 | None:intergenic | 25.0% |
| ! | AATTCCTAGAAGTTCTATAT+AGG | + | chr3.3:1876265-1876284 | MS.gene63677:intron | 25.0% |
| ! | AGAATCTATTTGAATGAACA+AGG | + | chr3.3:1878249-1878268 | MS.gene63677:CDS | 25.0% |
| ! | ATAGACCAAGTGAAATATTT+GGG | - | chr3.3:1877304-1877323 | None:intergenic | 25.0% |
| ! | ATTATATTGGATGTGAGAAA+TGG | + | chr3.3:1878971-1878990 | MS.gene63677:CDS | 25.0% |
| ! | CATTATATGATAAATAGCTG+TGG | + | chr3.3:1878769-1878788 | MS.gene63677:intron | 25.0% |
| ! | GAATCTATTTGAATGAACAA+GGG | + | chr3.3:1878250-1878269 | MS.gene63677:CDS | 25.0% |
| ! | GGTCATTGATAAAAACAAAA+TGG | - | chr3.3:1877682-1877701 | None:intergenic | 25.0% |
| ! | GTTAATAAGTGATGACAATT+GGG | + | chr3.3:1876364-1876383 | MS.gene63677:intron | 25.0% |
| ! | GTTAATATTTCGTGTATGTT+TGG | - | chr3.3:1876613-1876632 | None:intergenic | 25.0% |
| ! | TAAGCCTATGTTTAATATCA+AGG | + | chr3.3:1876471-1876490 | MS.gene63677:intron | 25.0% |
| ! | TATAGACCAAGTGAAATATT+TGG | - | chr3.3:1877305-1877324 | None:intergenic | 25.0% |
| ! | TATGATATATGTTTATCTGC+TGG | - | chr3.3:1877328-1877347 | None:intergenic | 25.0% |
| ! | TGACAGAGATTACATTATAT+TGG | + | chr3.3:1878958-1878977 | MS.gene63677:CDS | 25.0% |
| ! | TGTTAATAAGTGATGACAAT+TGG | + | chr3.3:1876363-1876382 | MS.gene63677:intron | 25.0% |
| ! | TTGCCTAAAAACTAAAACTT+TGG | - | chr3.3:1876742-1876761 | None:intergenic | 25.0% |
| ! | TTTCACTTTCTTGATTATCT+AGG | - | chr3.3:1875903-1875922 | None:intergenic | 25.0% |
| !! | ACAAAATTCAAGTTCAAAGA+AGG | + | chr3.3:1877616-1877635 | MS.gene63677:intron | 25.0% |
| !! | GATATATTTCTACAGTATAG+TGG | + | chr3.3:1878387-1878406 | MS.gene63677:intron | 25.0% |
| !! | GCAATAACTCTTTTCATAAA+TGG | - | chr3.3:1876976-1876995 | None:intergenic | 25.0% |
| !! | TAAGAATAAAGGTGTACTTA+AGG | - | chr3.3:1877190-1877209 | None:intergenic | 25.0% |
| !!! | AAGCCAAAGTTTTAGTTTTT+AGG | + | chr3.3:1876736-1876755 | MS.gene63677:intron | 25.0% |
| !!! | CTTTTTTATTCATGAGACAA+CGG | - | chr3.3:1878317-1878336 | None:intergenic | 25.0% |
| !!! | TAACTTTTAGTTTGTTGACA+GGG | + | chr3.3:1878210-1878229 | MS.gene63677:intron | 25.0% |
| !!! | TTTTTAGGCAATAGTCATTT+TGG | + | chr3.3:1876751-1876770 | MS.gene63677:intron | 25.0% |
| AACACTAGTGTTTGTATAGT+GGG | + | chr3.3:1876300-1876319 | MS.gene63677:intron | 30.0% | |
| AAGTATGTATATTGAAGGAC+TGG | - | chr3.3:1876907-1876926 | None:intergenic | 30.0% | |
| AGCTTAAATCTGTAGAAAAG+AGG | - | chr3.3:1878571-1878590 | None:intergenic | 30.0% | |
| ATATGTCAACTGGATAAAAG+AGG | + | chr3.3:1878431-1878450 | MS.gene63677:CDS | 30.0% | |
| ATTTCTGTTGACAAATTCAC+AGG | - | chr3.3:1875721-1875740 | None:intergenic | 30.0% | |
| CAAATATCTCCATCAAAAAC+TGG | + | chr3.3:1878480-1878499 | MS.gene63677:CDS | 30.0% | |
| GACTACTCATTACATATTGA+GGG | + | chr3.3:1877090-1877109 | MS.gene63677:intron | 30.0% | |
| GTATAAACCATCTTTAGTAC+AGG | + | chr3.3:1878530-1878549 | MS.gene63677:CDS | 30.0% | |
| TCATACTAACACTGAAGAAT+AGG | + | chr3.3:1877343-1877362 | MS.gene63677:intron | 30.0% | |
| TGACTACTCATTACATATTG+AGG | + | chr3.3:1877089-1877108 | MS.gene63677:intron | 30.0% | |
| TTACTCTATTGTCCAAATCA+GGG | - | chr3.3:1876111-1876130 | None:intergenic | 30.0% | |
| TTCAGAATGAATTGTGACAA+CGG | - | chr3.3:1878173-1878192 | None:intergenic | 30.0% | |
| TTTACTCTATTGTCCAAATC+AGG | - | chr3.3:1876112-1876131 | None:intergenic | 30.0% | |
| TTTCTATCTTAATAGTGGTG+TGG | + | chr3.3:1875323-1875342 | MS.gene63677:intron | 30.0% | |
| TTTCTTTAATCTGCATCCTA+AGG | + | chr3.3:1875257-1875276 | MS.gene63677:CDS | 30.0% | |
| ! | AAATTCAAGTTCAAAGAAGG+AGG | + | chr3.3:1877619-1877638 | MS.gene63677:intron | 30.0% |
| ! | AATTTTTCTCTCCATTCTGA+AGG | - | chr3.3:1878902-1878921 | None:intergenic | 30.0% |
| ! | ATTGTATGCATACCCAATTT+TGG | + | chr3.3:1876427-1876446 | MS.gene63677:intron | 30.0% |
| ! | TCAGGATAATCTTTTGAATG+CGG | - | chr3.3:1878941-1878960 | None:intergenic | 30.0% |
| ! | TGTAACTTGATTTTCGAAGA+CGG | + | chr3.3:1875694-1875713 | MS.gene63677:intron | 30.0% |
| ! | TTCAATCGTTAGCTTAGATT+TGG | + | chr3.3:1875353-1875372 | MS.gene63677:intron | 30.0% |
| !! | GGACAATTTTGATGATTTTG+TGG | + | chr3.3:1877643-1877662 | MS.gene63677:intron | 30.0% |
| !! | TAAAGGTGTACTTAAGGTTT+TGG | - | chr3.3:1877184-1877203 | None:intergenic | 30.0% |
| !!! | GTAACTTTTAGTTTGTTGAC+AGG | + | chr3.3:1878209-1878228 | MS.gene63677:intron | 30.0% |
| !!! | TTTGCTTTTTATTGCAGACA+AGG | + | chr3.3:1875606-1875625 | MS.gene63677:intron | 30.0% |
| AACACTAAACTTGATCAGTC+TGG | - | chr3.3:1875837-1875856 | None:intergenic | 35.0% | |
| AACATCAACTTAACCACTGT+TGG | - | chr3.3:1878113-1878132 | None:intergenic | 35.0% | |
| ACACTAGTGTTTGTATAGTG+GGG | + | chr3.3:1876301-1876320 | MS.gene63677:intron | 35.0% | |
| ACTAATGAAGTGCACAATCA+AGG | - | chr3.3:1876838-1876857 | None:intergenic | 35.0% | |
| ACTTTATCTCAAGGTGTGTT+TGG | + | chr3.3:1878627-1878646 | MS.gene63677:intron | 35.0% | |
| AGAATAGGCTATCTATCTCA+TGG | + | chr3.3:1877358-1877377 | MS.gene63677:intron | 35.0% | |
| AGATTCTTCCATTGATGTCT+AGG | - | chr3.3:1878236-1878255 | None:intergenic | 35.0% | |
| AGATTTAAGCTTATCCGCAT+TGG | + | chr3.3:1878580-1878599 | MS.gene63677:intron | 35.0% | |
| AGTTGTCATGACAACAATGA+AGG | + | chr3.3:1878136-1878155 | MS.gene63677:intron | 35.0% | |
| ATATAACTGAGTCTGACTCA+TGG | - | chr3.3:1875512-1875531 | None:intergenic | 35.0% | |
| CAACACTAGTGTTTGTATAG+TGG | + | chr3.3:1876299-1876318 | MS.gene63677:intron | 35.0% | |
| CTCGCCTTGATATTAAACAT+AGG | - | chr3.3:1876478-1876497 | None:intergenic | 35.0% | |
| CTCTCCTATATAGAACTTCT+AGG | - | chr3.3:1876272-1876291 | None:intergenic | 35.0% | |
| TAAACATGTCTAAACCTAGC+AGG | + | chr3.3:1876128-1876147 | MS.gene63677:intron | 35.0% | |
| TAGCACCCAAATATTTCACT+TGG | + | chr3.3:1877296-1877315 | MS.gene63677:intron | 35.0% | |
| TATAACTGAGTCTGACTCAT+GGG | - | chr3.3:1875511-1875530 | None:intergenic | 35.0% | |
| TGAATTTGAAGAAGAAAGGG+TGG | - | chr3.3:1877523-1877542 | None:intergenic | 35.0% | |
| TGTAACGGTACAAACATGTT+TGG | - | chr3.3:1878751-1878770 | None:intergenic | 35.0% | |
| TTACTCACGCAATCAGAAAA+TGG | - | chr3.3:1876024-1876043 | None:intergenic | 35.0% | |
| TTATACCGCAACTTCAATAC+TGG | - | chr3.3:1878516-1878535 | None:intergenic | 35.0% | |
| TTCATTTGTCTGCAGTTTGA+AGG | + | chr3.3:1878821-1878840 | MS.gene63677:intron | 35.0% | |
| TTGATGGAGATATTTGAACC+AGG | - | chr3.3:1878476-1878495 | None:intergenic | 35.0% | |
| ! | AAGGTATGTCCAGTTTTTGA+TGG | - | chr3.3:1878492-1878511 | None:intergenic | 35.0% |
| ! | ATCAAGAAAGTGAAAGCACA+TGG | + | chr3.3:1875908-1875927 | MS.gene63677:intron | 35.0% |
| ! | GTAACTTGATTTTCGAAGAC+GGG | + | chr3.3:1875695-1875714 | MS.gene63677:intron | 35.0% |
| ! | GTAGAAAAGAGGCGTAAATA+TGG | - | chr3.3:1878560-1878579 | None:intergenic | 35.0% |
| ! | GTGAAATATTTGGGTGCTAT+TGG | - | chr3.3:1877295-1877314 | None:intergenic | 35.0% |
| ! | TAGCAGGTTTTCTAATATCC+TGG | + | chr3.3:1878455-1878474 | MS.gene63677:CDS | 35.0% |
| ! | TTTTGAATGCGGATCATTGA+TGG | - | chr3.3:1878930-1878949 | None:intergenic | 35.0% |
| !! | CTATTGGCATTTGGTGTTAT+TGG | - | chr3.3:1877279-1877298 | None:intergenic | 35.0% |
| !! | GGATTAGTTGGTAATTGAGT+CGG | - | chr3.3:1876674-1876693 | None:intergenic | 35.0% |
| !! | TAGCAAGCTTTCTAGCTAAA+TGG | - | chr3.3:1875667-1875686 | None:intergenic | 35.0% |
| ACAAAATTGGGTATCCCTTG+AGG | - | chr3.3:1876346-1876365 | None:intergenic | 40.0% | |
| ACAGCTAACCAAAATGTGGA+GGG | - | chr3.3:1876080-1876099 | None:intergenic | 40.0% | |
| ACGGTACAAACATGTTTGGA+TGG | - | chr3.3:1878747-1878766 | None:intergenic | 40.0% | |
| ACTGGATAAAAGAGGATAGC+AGG | + | chr3.3:1878439-1878458 | MS.gene63677:CDS | 40.0% | |
| ATCTAGGCAGTCAGATTCAT+GGG | - | chr3.3:1875887-1875906 | None:intergenic | 40.0% | |
| ATTTGTCTGCAGTTTGAAGG+TGG | + | chr3.3:1878824-1878843 | MS.gene63677:intron | 40.0% | |
| CAAGGTTACTGATATTCCAG+AGG | + | chr3.3:1875624-1875643 | MS.gene63677:intron | 40.0% | |
| CAATACCACTCAGTATCCAT+TGG | + | chr3.3:1876700-1876719 | MS.gene63677:intron | 40.0% | |
| CAATGGATACTGAGTGGTAT+TGG | - | chr3.3:1876702-1876721 | None:intergenic | 40.0% | |
| CACTAGTGTTTGTATAGTGG+GGG | + | chr3.3:1876302-1876321 | MS.gene63677:intron | 40.0% | |
| CTTTAAATGAGCCTCACCAA+TGG | - | chr3.3:1876719-1876738 | None:intergenic | 40.0% | |
| GTACAAACATGTTTGGATGG+AGG | - | chr3.3:1878744-1878763 | None:intergenic | 40.0% | |
| GTATGCCATCCTGTTTAAGT+GGG | + | chr3.3:1876203-1876222 | MS.gene63677:intron | 40.0% | |
| GTTTGGCGACTAATTCTTGT+GGG | - | chr3.3:1877703-1877722 | None:intergenic | 40.0% | |
| TATCTAGGCAGTCAGATTCA+TGG | - | chr3.3:1875888-1875907 | None:intergenic | 40.0% | |
| TATGCCATCCTGTTTAAGTG+GGG | + | chr3.3:1876204-1876223 | MS.gene63677:intron | 40.0% | |
| TCAAGGTGTGTTTGGATTGA+GGG | + | chr3.3:1878635-1878654 | MS.gene63677:intron | 40.0% | |
| TCTGGTATCATAAGCACAGT+AGG | + | chr3.3:1878028-1878047 | MS.gene63677:intron | 40.0% | |
| TGAACAAGGGATTAATGCAC+AGG | + | chr3.3:1878263-1878282 | MS.gene63677:CDS | 40.0% | |
| TGGCTTACCTGTACTAAAGA+TGG | - | chr3.3:1878540-1878559 | None:intergenic | 40.0% | |
| TGTTTGGCGACTAATTCTTG+TGG | - | chr3.3:1877704-1877723 | None:intergenic | 40.0% | |
| TTGAACTGCAAAACACTGCA+TGG | - | chr3.3:1878350-1878369 | None:intergenic | 40.0% | |
| ! | CCTTTCCAGTATTGAAGTTG+CGG | + | chr3.3:1878508-1878527 | MS.gene63677:CDS | 40.0% |
| ! | TGCATACCCAATTTTGGACA+AGG | + | chr3.3:1876433-1876452 | MS.gene63677:intron | 40.0% |
| ! | TGTGTTTGGATTGAGGGTTT+TGG | + | chr3.3:1878641-1878660 | MS.gene63677:intron | 40.0% |
| ! | TTCAAGTTCAAAGAAGGAGG+AGG | + | chr3.3:1877622-1877641 | MS.gene63677:intron | 40.0% |
| !! | ATTTGGGTGCTATTGGCATT+TGG | - | chr3.3:1877288-1877307 | None:intergenic | 40.0% |
| !! | GGTGGACTTGGTCTATATTT+TGG | + | chr3.3:1878662-1878681 | MS.gene63677:intron | 40.0% |
| !! | TTTCTAGCTAAATGGCTCTC+TGG | - | chr3.3:1875659-1875678 | None:intergenic | 40.0% |
| !!! | GCACAGAAGTTTTGTTGTTG+CGG | - | chr3.3:1877472-1877491 | None:intergenic | 40.0% |
| AATCCCCCACTTAAACAGGA+TGG | - | chr3.3:1876211-1876230 | None:intergenic | 45.0% | |
| ACACCTCTCTTTCGTGGAAT+TGG | + | chr3.3:1877721-1877740 | MS.gene63677:intron | 45.0% | |
| ACATGTCTAAACCTAGCAGG+AGG | + | chr3.3:1876131-1876150 | MS.gene63677:intron | 45.0% | |
| ACGCTATGGCATATGTCAAC+TGG | + | chr3.3:1878421-1878440 | MS.gene63677:CDS | 45.0% | |
| AGAAAGGGTGGTTGTGGTTA+TGG | - | chr3.3:1877511-1877530 | None:intergenic | 45.0% | |
| AGCTAACCAAAATGTGGAGG+GGG | - | chr3.3:1876078-1876097 | None:intergenic | 45.0% | |
| AGGATCGAGCAATGGAAGAT+TGG | - | chr3.3:1878855-1878874 | None:intergenic | 45.0% | |
| AGGCTATCTATCTCATGGTG+AGG | + | chr3.3:1877363-1877382 | MS.gene63677:intron | 45.0% | |
| AGTAGTCTCAACGCAGAAAG+AGG | + | chr3.3:1875964-1875983 | MS.gene63677:intron | 45.0% | |
| AGTGAGGCTATCTCATTGTC+AGG | + | chr3.3:1877398-1877417 | MS.gene63677:intron | 45.0% | |
| ATCGAAGTCCATGTTGCTAC+TGG | + | chr3.3:1875458-1875477 | MS.gene63677:intron | 45.0% | |
| ATGCCATCCTGTTTAAGTGG+GGG | + | chr3.3:1876205-1876224 | MS.gene63677:intron | 45.0% | |
| ATGCTTAGCCAGTAGCAACA+TGG | - | chr3.3:1875469-1875488 | None:intergenic | 45.0% | |
| ATGGGAAAGCAGACACAAGA+AGG | - | chr3.3:1875493-1875512 | None:intergenic | 45.0% | |
| ATTGCTCGATCCTTCAATGC+GGG | + | chr3.3:1878862-1878881 | MS.gene63677:CDS | 45.0% | |
| CAACAATCCCCCACTTAAAC+AGG | - | chr3.3:1876215-1876234 | None:intergenic | 45.0% | |
| CACAGCTAACCAAAATGTGG+AGG | - | chr3.3:1876081-1876100 | None:intergenic | 45.0% | |
| CACTCGCCTTGTCCAAAATT+GGG | - | chr3.3:1876442-1876461 | None:intergenic | 45.0% | |
| CAGCACAGCTAACCAAAATG+TGG | - | chr3.3:1876084-1876103 | None:intergenic | 45.0% | |
| CAGCTAACCAAAATGTGGAG+GGG | - | chr3.3:1876079-1876098 | None:intergenic | 45.0% | |
| CATGTCTAAACCTAGCAGGA+GGG | + | chr3.3:1876132-1876151 | MS.gene63677:intron | 45.0% | |
| CATGTTTGGATGGAGGACTT+TGG | - | chr3.3:1878737-1878756 | None:intergenic | 45.0% | |
| CATTGCTCGATCCTTCAATG+CGG | + | chr3.3:1878861-1878880 | MS.gene63677:CDS | 45.0% | |
| CCGCAACTTCAATACTGGAA+AGG | - | chr3.3:1878511-1878530 | None:intergenic | 45.0% | |
| CTCAAGGTGTGTTTGGATTG+AGG | + | chr3.3:1878634-1878653 | MS.gene63677:intron | 45.0% | |
| CTGTGCTGAAAACCCTGATT+TGG | + | chr3.3:1876096-1876115 | MS.gene63677:intron | 45.0% | |
| CTGTTTAAGTGGGGGATTGT+TGG | + | chr3.3:1876213-1876232 | MS.gene63677:intron | 45.0% | |
| GGTATGCCATCCTGTTTAAG+TGG | + | chr3.3:1876202-1876221 | MS.gene63677:intron | 45.0% | |
| GTGCGTGATTACGTGAATTC+TGG | + | chr3.3:1878010-1878029 | MS.gene63677:intron | 45.0% | |
| TAAACAGGATGGCATACCTC+TGG | - | chr3.3:1876200-1876219 | None:intergenic | 45.0% | |
| TAATGGCTTGAGACGATGGT+GGG | - | chr3.3:1877582-1877601 | None:intergenic | 45.0% | |
| TACTGATATTCCAGAGGCCA+AGG | + | chr3.3:1875630-1875649 | MS.gene63677:intron | 45.0% | |
| TATGCCATAGCGTCTTTCGA+TGG | - | chr3.3:1878414-1878433 | None:intergenic | 45.0% | |
| TCTATCTCATGGTGAGGATG+AGG | + | chr3.3:1877369-1877388 | MS.gene63677:intron | 45.0% | |
| TGAAGAAGAAAGGGTGGTTG+TGG | - | chr3.3:1877517-1877536 | None:intergenic | 45.0% | |
| TGAATGCTTTCGCCAATGCT+TGG | + | chr3.3:1878082-1878101 | MS.gene63677:intron | 45.0% | |
| TTTGGATGGAGGACTTTGGA+GGG | - | chr3.3:1878733-1878752 | None:intergenic | 45.0% | |
| ! | ATAGTGGGGGTATGACTCTT+GGG | + | chr3.3:1876315-1876334 | MS.gene63677:intron | 45.0% |
| ! | CTCCATTCTGAAGGAGCTAA+AGG | - | chr3.3:1878893-1878912 | None:intergenic | 45.0% |
| ! | TAAGCTTATCCGCATTGGCA+TGG | + | chr3.3:1878585-1878604 | MS.gene63677:intron | 45.0% |
| ! | TATAGTGGGGGTATGACTCT+TGG | + | chr3.3:1876314-1876333 | MS.gene63677:intron | 45.0% |
| ! | TGCCTTTAGCTCCTTCAGAA+TGG | + | chr3.3:1878888-1878907 | MS.gene63677:CDS | 45.0% |
| !! | AGCACAGTAGGAAGTATTGC+TGG | + | chr3.3:1878040-1878059 | MS.gene63677:intron | 45.0% |
| !! | GTATTGGTGCTCGGATTAGT+TGG | - | chr3.3:1876686-1876705 | None:intergenic | 45.0% |
| !! | GTTTGGATTGAGGGTTTTGG+TGG | + | chr3.3:1878644-1878663 | MS.gene63677:intron | 45.0% |
| !! | TACTGAGTGGTATTGGTGCT+CGG | - | chr3.3:1876695-1876714 | None:intergenic | 45.0% |
| !! | TTCCACGAAAGAGAGGTGTT+TGG | - | chr3.3:1877720-1877739 | None:intergenic | 45.0% |
| !!! | ATTGAGGGTTTTGGTGGACT+TGG | + | chr3.3:1878650-1878669 | MS.gene63677:intron | 45.0% |
| !!! | TAATTTTTTTTAATAATACA+AGG | - | chr3.3:1876650-1876669 | None:intergenic | 5.0% |
| AAAGGCAATGCCCGCATTGA+AGG | - | chr3.3:1878875-1878894 | None:intergenic | 50.0% | |
| AAATGGCTCTCTGGTAGCCT+TGG | - | chr3.3:1875650-1875669 | None:intergenic | 50.0% | |
| ACTCTTGGGGCATACCTCAA+GGG | + | chr3.3:1876329-1876348 | MS.gene63677:intron | 50.0% | |
| AGGCAGTCAGATTCATGGGA+TGG | - | chr3.3:1875883-1875902 | None:intergenic | 50.0% | |
| ATCTCATGGTGAGGATGAGG+TGG | + | chr3.3:1877372-1877391 | MS.gene63677:intron | 50.0% | |
| ATGCTTTCGCCAATGCTTGG+AGG | + | chr3.3:1878085-1878104 | MS.gene63677:intron | 50.0% | |
| CACGCACGTCACGATACTTA+GGG | - | chr3.3:1877997-1878016 | None:intergenic | 50.0% | |
| CAGCTAATGGCTTGAGACGA+TGG | - | chr3.3:1877586-1877605 | None:intergenic | 50.0% | |
| CCACTCAGTATCCATTGGTG+AGG | + | chr3.3:1876705-1876724 | MS.gene63677:intron | 50.0% | |
| CCACTCGCCTTGTCCAAAAT+TGG | - | chr3.3:1876443-1876462 | None:intergenic | 50.0% | |
| CCTCAAAATACCCTCCTGCT+AGG | - | chr3.3:1876145-1876164 | None:intergenic | 50.0% | |
| CCTCACCAATGGATACTGAG+TGG | - | chr3.3:1876708-1876727 | None:intergenic | 50.0% | |
| CCTCCAATTCCACGAAAGAG+AGG | - | chr3.3:1877727-1877746 | None:intergenic | 50.0% | |
| CCTCTCTTTCGTGGAATTGG+AGG | + | chr3.3:1877724-1877743 | MS.gene63677:intron | 50.0% | |
| CGCAGAAAGAGGTAAGCAGA+AGG | + | chr3.3:1875975-1875994 | MS.gene63677:intron | 50.0% | |
| CGCATTGAAGGATCGAGCAA+TGG | - | chr3.3:1878863-1878882 | None:intergenic | 50.0% | |
| CTAATGGCTTGAGACGATGG+TGG | - | chr3.3:1877583-1877602 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGACTTTGG+AGG | - | chr3.3:1878734-1878753 | None:intergenic | 50.0% | |
| TCACGCACGTCACGATACTT+AGG | - | chr3.3:1877998-1878017 | None:intergenic | 50.0% | |
| TGACAGGGCCTAGACATCAA+TGG | + | chr3.3:1878225-1878244 | MS.gene63677:intron | 50.0% | |
| TGTACTCGTCGAGCAGCTAA+TGG | - | chr3.3:1877599-1877618 | None:intergenic | 50.0% | |
| TTCTGTTTCCCTACCTCCAG+AGG | + | chr3.3:1876181-1876200 | MS.gene63677:intron | 50.0% | |
| ! | AGATCTCCCCCTCCACATTT+TGG | + | chr3.3:1876069-1876088 | MS.gene63677:intron | 50.0% |
| ! | ATGGCATACCTCTGGAGGTA+GGG | - | chr3.3:1876192-1876211 | None:intergenic | 50.0% |
| ! | CCAATTTTGGACAAGGCGAG+TGG | + | chr3.3:1876440-1876459 | MS.gene63677:intron | 50.0% |
| ! | TAGTGGGGGTATGACTCTTG+GGG | + | chr3.3:1876316-1876335 | MS.gene63677:intron | 50.0% |
| ! | TTGGATGGAGGACTTTGGAG+GGG | - | chr3.3:1878732-1878751 | None:intergenic | 50.0% |
| !!! | CCTAGCAGGAGGGTATTTTG+AGG | + | chr3.3:1876142-1876161 | MS.gene63677:intron | 50.0% |
| ACAGGATGGCATACCTCTGG+AGG | - | chr3.3:1876197-1876216 | None:intergenic | 55.0% | |
| AGTGGACAGCCATGCCAATG+CGG | - | chr3.3:1878597-1878616 | None:intergenic | 55.0% | |
| ATGCTTGGAGGCTCCAACAG+TGG | + | chr3.3:1878097-1878116 | MS.gene63677:intron | 55.0% | |
| CGCCAAACACCTCTCTTTCG+TGG | + | chr3.3:1877715-1877734 | MS.gene63677:intron | 55.0% | |
| CTGTTGGAGCCTCCAAGCAT+TGG | - | chr3.3:1878097-1878116 | None:intergenic | 55.0% | |
| GACTCTTGGGGCATACCTCA+AGG | + | chr3.3:1876328-1876347 | MS.gene63677:intron | 55.0% | |
| TGGGCCATCGAAAGACGCTA+TGG | + | chr3.3:1878407-1878426 | MS.gene63677:CDS | 55.0% | |
| ! | GATGGCATACCTCTGGAGGT+AGG | - | chr3.3:1876193-1876212 | None:intergenic | 55.0% |
| !! | GAGACGATGGTGGGTAAGAG+AGG | - | chr3.3:1877573-1877592 | None:intergenic | 55.0% |
| GAGGATGAGGTGGTGCAGTG+AGG | + | chr3.3:1877382-1877401 | MS.gene63677:intron | 60.0% | |
| ! | ATGGAGGACTTTGGAGGGGC+GGG | - | chr3.3:1878728-1878747 | None:intergenic | 60.0% |
| ! | GATGGAGGACTTTGGAGGGG+CGG | - | chr3.3:1878729-1878748 | None:intergenic | 60.0% |
| ! | TCTCTGGTAGCCTTGGCCTC+TGG | - | chr3.3:1875643-1875662 | None:intergenic | 60.0% |
| ! | TGGAGGACTTTGGAGGGGCG+GGG | - | chr3.3:1878727-1878746 | None:intergenic | 65.0% |
| TTGGAGGGGCGGGGAGAGGA+GGG | - | chr3.3:1878718-1878737 | None:intergenic | 70.0% | |
| TTTGGAGGGGCGGGGAGAGG+AGG | - | chr3.3:1878719-1878738 | None:intergenic | 70.0% | |
| ! | GACTTTGGAGGGGCGGGGAG+AGG | - | chr3.3:1878722-1878741 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 1875219 | 1879018 | 1875219 | ID=MS.gene63677 |
| chr3.3 | mRNA | 1875219 | 1879018 | 1875219 | ID=MS.gene63677.t1;Parent=MS.gene63677 |
| chr3.3 | exon | 1875219 | 1875278 | 1875219 | ID=MS.gene63677.t1.exon1;Parent=MS.gene63677.t1 |
| chr3.3 | CDS | 1875219 | 1875278 | 1875219 | ID=cds.MS.gene63677.t1;Parent=MS.gene63677.t1 |
| chr3.3 | exon | 1878231 | 1878284 | 1878231 | ID=MS.gene63677.t1.exon2;Parent=MS.gene63677.t1 |
| chr3.3 | CDS | 1878231 | 1878284 | 1878231 | ID=cds.MS.gene63677.t1;Parent=MS.gene63677.t1 |
| chr3.3 | exon | 1878402 | 1878551 | 1878402 | ID=MS.gene63677.t1.exon3;Parent=MS.gene63677.t1 |
| chr3.3 | CDS | 1878402 | 1878551 | 1878402 | ID=cds.MS.gene63677.t1;Parent=MS.gene63677.t1 |
| chr3.3 | exon | 1878836 | 1879018 | 1878836 | ID=MS.gene63677.t1.exon4;Parent=MS.gene63677.t1 |
| chr3.3 | CDS | 1878836 | 1879018 | 1878836 | ID=cds.MS.gene63677.t1;Parent=MS.gene63677.t1 |
| Gene Sequence |
| Protein sequence |
