Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64012.t1 | XP_003589478.1 | 97.2 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 6.60E-239 | 836.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64012.t1 | Q6Z398 | 70.2 | 430 | 127 | 1 | 1 | 429 | 72 | 501 | 1.3e-171 | 604.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64012.t1 | G7I766 | 97.2 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 4.8e-239 | 836.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049065 | MS.gene64012 | PPI |
| MS.gene22288 | MS.gene64012 | PPI |
| MS.gene05986 | MS.gene64012 | PPI |
| MS.gene64012 | MS.gene015822 | PPI |
| MS.gene21680 | MS.gene64012 | PPI |
| MS.gene21950 | MS.gene64012 | PPI |
| MS.gene024702 | MS.gene64012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64012.t1 | MTR_1g025140 | 97.203 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 0.0 | 859 |
| MS.gene64012.t1 | MTR_1g025140 | 97.531 | 324 | 8 | 0 | 1 | 324 | 64 | 387 | 0.0 | 655 |
| MS.gene64012.t1 | MTR_8g102460 | 58.005 | 431 | 179 | 2 | 1 | 429 | 62 | 492 | 1.73e-177 | 505 |
| MS.gene64012.t1 | MTR_8g014530 | 57.541 | 431 | 180 | 3 | 1 | 429 | 62 | 491 | 3.02e-174 | 497 |
| MS.gene64012.t1 | MTR_6g088795 | 56.148 | 431 | 187 | 2 | 1 | 429 | 60 | 490 | 1.41e-167 | 480 |
| MS.gene64012.t1 | MTR_8g102460 | 57.423 | 357 | 150 | 2 | 75 | 429 | 1 | 357 | 3.42e-144 | 416 |
| MS.gene64012.t1 | MTR_5g009000 | 50.685 | 438 | 202 | 5 | 1 | 427 | 62 | 496 | 7.18e-140 | 409 |
| MS.gene64012.t1 | MTR_8g102460 | 62.245 | 294 | 110 | 1 | 1 | 293 | 62 | 355 | 6.86e-128 | 374 |
| MS.gene64012.t1 | MTR_4g097900 | 40.741 | 270 | 114 | 5 | 161 | 425 | 1 | 229 | 1.70e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64012.t1 | AT1G47840 | 63.256 | 430 | 156 | 2 | 1 | 429 | 65 | 493 | 0.0 | 543 |
| MS.gene64012.t1 | AT4G29130 | 57.143 | 434 | 184 | 2 | 1 | 432 | 62 | 495 | 1.82e-174 | 498 |
| MS.gene64012.t1 | AT2G19860 | 55.916 | 431 | 188 | 2 | 1 | 429 | 62 | 492 | 4.86e-165 | 474 |
| MS.gene64012.t1 | AT2G19860 | 55.091 | 383 | 170 | 2 | 49 | 429 | 1 | 383 | 1.81e-142 | 412 |
| MS.gene64012.t1 | AT1G50460 | 48.165 | 436 | 213 | 5 | 1 | 425 | 62 | 495 | 8.58e-135 | 397 |
| MS.gene64012.t1 | AT1G47840 | 65.306 | 294 | 100 | 2 | 1 | 293 | 65 | 357 | 1.25e-128 | 377 |
| MS.gene64012.t1 | AT3G20040 | 45.958 | 433 | 226 | 3 | 1 | 426 | 62 | 493 | 2.76e-128 | 380 |
| MS.gene64012.t1 | AT1G50460 | 48.276 | 406 | 197 | 5 | 31 | 425 | 16 | 419 | 3.51e-125 | 369 |
| MS.gene64012.t1 | AT1G50460 | 51.361 | 294 | 140 | 3 | 1 | 293 | 62 | 353 | 1.90e-95 | 291 |
| MS.gene64012.t1 | AT4G37840 | 42.130 | 432 | 230 | 8 | 1 | 424 | 63 | 482 | 3.36e-95 | 295 |
| MS.gene64012.t1 | AT1G47845 | 60.741 | 135 | 52 | 1 | 218 | 351 | 40 | 174 | 2.74e-50 | 169 |
Find 111 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACATGCCCTTGTAATT+TGG | 0.149102 | 1.4:-741130 | None:intergenic |
| TCTCTATCAAATACAGTTAA+AGG | 0.151018 | 1.4:-741308 | None:intergenic |
| GCTGAAGAGGAAGGTTTATT+TGG | 0.151162 | 1.4:+741550 | MS.gene64012:CDS |
| CTGTTTGATTTCATTGCTTT+GGG | 0.156073 | 1.4:+740549 | MS.gene64012:CDS |
| ATCTTCTTTGTCCACAAATT+TGG | 0.156563 | 1.4:-740577 | None:intergenic |
| TGTTTCTTCTTCTGATAAAA+TGG | 0.207744 | 1.4:+741146 | MS.gene64012:CDS |
| CCAATTTCTCTCTTTCTTCC+TGG | 0.240507 | 1.4:-740618 | None:intergenic |
| GCTGTTTGATTTCATTGCTT+TGG | 0.257650 | 1.4:+740548 | MS.gene64012:CDS |
| GACTCAAAAGGTGTTATCTT+TGG | 0.284014 | 1.4:+742300 | MS.gene64012:CDS |
| GAAACATGCCCTTGTAATTT+GGG | 0.288810 | 1.4:-741129 | None:intergenic |
| CCAGGAAGAAAGAGAGAAAT+TGG | 0.301013 | 1.4:+740618 | MS.gene64012:CDS |
| TGCTGCATGGCGCTTAGATC+CGG | 0.320311 | 1.4:-741956 | None:intergenic |
| TCAAAAGATGGTTCTGGTAT+TGG | 0.321089 | 1.4:+742450 | MS.gene64012:CDS |
| GCTGGGCTTTCCTCTGATGA+TGG | 0.324548 | 1.4:+739898 | MS.gene64012:CDS |
| CTTTCCTCTGATGATGGGCC+CGG | 0.337377 | 1.4:+739904 | MS.gene64012:CDS |
| CTGAAGAGGAAGGTTTATTT+GGG | 0.339959 | 1.4:+741551 | MS.gene64012:CDS |
| GATTCAGTAAAGGAGCTATT+AGG | 0.376273 | 1.4:+742393 | MS.gene64012:CDS |
| TCAATAGAAGTTTGTTTGAC+AGG | 0.385569 | 1.4:-740657 | None:intergenic |
| GCTGCATGGCGCTTAGATCC+GGG | 0.391118 | 1.4:-741955 | None:intergenic |
| TGGTATTGGAGGTGCTCTAT+TGG | 0.395444 | 1.4:+742464 | MS.gene64012:CDS |
| GAGTGGGGTGCTTTCTCAAA+TGG | 0.402916 | 1.4:+741281 | MS.gene64012:CDS |
| TGTCTTCTCAAATGCGGGCT+GGG | 0.405946 | 1.4:+739881 | MS.gene64012:CDS |
| CTCTATCAAATACAGTTAAA+GGG | 0.412605 | 1.4:-741307 | None:intergenic |
| GAACATTCAAAAGATGGTTC+TGG | 0.414412 | 1.4:+742444 | MS.gene64012:CDS |
| ATGTCTTCTCAAATGCGGGC+TGG | 0.415217 | 1.4:+739880 | MS.gene64012:CDS |
| AACTGTATTTGATAGAGAAA+TGG | 0.419441 | 1.4:+741313 | MS.gene64012:CDS |
| TTGTCCATGCCTTTCGTACT+CGG | 0.427134 | 1.4:+741592 | MS.gene64012:CDS |
| AGAAGTGTTGTTGCCATTGA+TGG | 0.429881 | 1.4:+742327 | MS.gene64012:CDS |
| GTGATAGAACATTCAAAAGA+TGG | 0.439467 | 1.4:+742438 | MS.gene64012:CDS |
| CGTGTGTTGAGGGTACAATT+AGG | 0.452657 | 1.4:+740142 | MS.gene64012:CDS |
| TTTCCTCTGATGATGGGCCC+GGG | 0.453044 | 1.4:+739905 | MS.gene64012:CDS |
| ATGAAAATTATCCTCAATAC+AGG | 0.454747 | 1.4:+742358 | MS.gene64012:CDS |
| GCCATGCAGCAAGATAATTC+TGG | 0.458132 | 1.4:+741968 | MS.gene64012:CDS |
| GGCGGTAGCTTAGCCGGTGC+AGG | 0.461257 | 1.4:+742246 | MS.gene64012:CDS |
| TTAGCCGGTGCAGGAATTGT+AGG | 0.462749 | 1.4:+742255 | MS.gene64012:CDS |
| TGCTTGTTTGAACGAGGCAT+TGG | 0.466967 | 1.4:+740848 | MS.gene64012:CDS |
| ACAATCTCAGGAATGTATCT+AGG | 0.472627 | 1.4:+741496 | MS.gene64012:CDS |
| CTGGGCTTTCCTCTGATGAT+GGG | 0.475375 | 1.4:+739899 | MS.gene64012:CDS |
| GAGACGAGTGCTAGTCAATA+TGG | 0.475755 | 1.4:+741528 | MS.gene64012:CDS |
| GGAAGAGTGTGGACATAAGT+TGG | 0.478490 | 1.4:-739940 | None:intergenic |
| CTGGCGATTTACAAGCAGTT+GGG | 0.483122 | 1.4:+741987 | MS.gene64012:CDS |
| AGTTGGTATCATGGGAAGCC+CGG | 0.484003 | 1.4:-739923 | None:intergenic |
| TGCAATGTCTTCTCAAATGC+GGG | 0.486500 | 1.4:+739876 | None:intergenic |
| GATAGATTTCATTTCCCTCC+AGG | 0.488417 | 1.4:+740600 | MS.gene64012:CDS |
| TGATGATATAGGAATGAGAA+AGG | 0.502649 | 1.4:+740082 | MS.gene64012:intron |
| TATGTCCACACTCTTCCCTC+CGG | 0.506905 | 1.4:+739946 | MS.gene64012:CDS |
| TGTCCATGCCTTTCGTACTC+GGG | 0.507486 | 1.4:+741593 | MS.gene64012:CDS |
| TTTGGGGCTAGCCAAATTTG+TGG | 0.509779 | 1.4:+740566 | MS.gene64012:CDS |
| TCCCTCCTCTATGATAAAGC+AGG | 0.511452 | 1.4:+742010 | MS.gene64012:CDS |
| AACAAACTTCCGTGTGTTGA+GGG | 0.512683 | 1.4:+740132 | MS.gene64012:CDS |
| GCGAAAACTTACATGGTGAC+CGG | 0.513028 | 1.4:-741354 | None:intergenic |
| GAAGTGTTGTTGCCATTGAT+GGG | 0.523264 | 1.4:+742328 | MS.gene64012:CDS |
| TTTCTCTCTTTCTTCCTGGA+GGG | 0.524090 | 1.4:-740614 | None:intergenic |
| TGGACATAAGTTGGTATCAT+GGG | 0.526568 | 1.4:-739931 | None:intergenic |
| TCTGGCGATTTACAAGCAGT+TGG | 0.527066 | 1.4:+741986 | MS.gene64012:CDS |
| TGCAAGTAAGTCCTGTATTG+AGG | 0.528492 | 1.4:-742369 | None:intergenic |
| TTACCCCTGCTTTATCATAG+AGG | 0.528899 | 1.4:-742015 | None:intergenic |
| GTGGACATAAGTTGGTATCA+TGG | 0.531624 | 1.4:-739932 | None:intergenic |
| AAACGAGGCGGTAGCTTAGC+CGG | 0.535055 | 1.4:+742240 | MS.gene64012:CDS |
| TAGCCGGTGCAGGAATTGTA+GGG | 0.535759 | 1.4:+742256 | MS.gene64012:CDS |
| CGAAAACTTACATGGTGACC+GGG | 0.538853 | 1.4:-741353 | None:intergenic |
| ATGCCCTTGTAATTTGGGAA+TGG | 0.547432 | 1.4:-741124 | None:intergenic |
| TCAGATCATTAGTACTGAGT+GGG | 0.549065 | 1.4:+741265 | MS.gene64012:intron |
| AAAGATGGTTCTGGTATTGG+AGG | 0.549177 | 1.4:+742453 | MS.gene64012:CDS |
| AAACAAACTTCTATTGACTC+TGG | 0.551611 | 1.4:+740663 | MS.gene64012:CDS |
| AGTGCCATTCCCAAATTACA+AGG | 0.554150 | 1.4:+741120 | MS.gene64012:CDS |
| GAACAAACTTCCGTGTGTTG+AGG | 0.554788 | 1.4:+740131 | MS.gene64012:CDS |
| TGTTTGATTTCATTGCTTTG+GGG | 0.556589 | 1.4:+740550 | MS.gene64012:CDS |
| GTTGGTATCATGGGAAGCCC+GGG | 0.557493 | 1.4:-739922 | None:intergenic |
| AAAATTTACCCGAGTACGAA+AGG | 0.558878 | 1.4:-741601 | None:intergenic |
| ATGTCCACACTCTTCCCTCC+GGG | 0.561316 | 1.4:+739947 | MS.gene64012:CDS |
| TCCAGAAACAGCAAAACCCT+TGG | 0.562132 | 1.4:-740703 | None:intergenic |
| GCCAGAATTATCTTGCTGCA+TGG | 0.563415 | 1.4:-741969 | None:intergenic |
| GCTAGTCAATATGGCTGAAG+AGG | 0.563886 | 1.4:+741537 | MS.gene64012:CDS |
| TTACTTGCAAGATTCAGTAA+AGG | 0.568226 | 1.4:+742383 | MS.gene64012:CDS |
| AATCCCTACAATTCCTGCAC+CGG | 0.571549 | 1.4:-742259 | None:intergenic |
| GATACTGTCGGAACACTAGC+CGG | 0.573684 | 1.4:+741018 | MS.gene64012:CDS |
| GTCAATATGGCTGAAGAGGA+AGG | 0.574803 | 1.4:+741541 | MS.gene64012:CDS |
| ATTTCTCTCTTTCTTCCTGG+AGG | 0.576352 | 1.4:-740615 | None:intergenic |
| CCCCTGCTTTATCATAGAGG+AGG | 0.578706 | 1.4:-742012 | None:intergenic |
| CTGCATGGCGCTTAGATCCG+GGG | 0.580837 | 1.4:-741954 | None:intergenic |
| CCCTGCTTTATCATAGAGGA+GGG | 0.582109 | 1.4:-742011 | None:intergenic |
| ATTGTCGTAGTATTCTGCTC+CGG | 0.591120 | 1.4:-741037 | None:intergenic |
| ATACTACGACAATGATGCTA+AGG | 0.592137 | 1.4:+741047 | MS.gene64012:CDS |
| CCCTCCTCTATGATAAAGCA+GGG | 0.592227 | 1.4:+742011 | MS.gene64012:CDS |
| AAGCCCGGGCCCATCATCAG+AGG | 0.592335 | 1.4:-739908 | None:intergenic |
| AAAATGGAAGACGACTCAAA+AGG | 0.601450 | 1.4:+742288 | MS.gene64012:CDS |
| AGTGTTGTTGCCATTGATGG+GGG | 0.606184 | 1.4:+742330 | MS.gene64012:CDS |
| ATGCAATGTCTTCTCAAATG+CGG | 0.607135 | 1.4:+739875 | None:intergenic |
| GATGCTGCTAGTATCAATCC+CGG | 0.613145 | 1.4:+741335 | MS.gene64012:CDS |
| ATACTAATCAAGTGGACCAA+GGG | 0.614805 | 1.4:+740687 | MS.gene64012:CDS |
| ACTCTGGCATACTAATCAAG+TGG | 0.616192 | 1.4:+740679 | MS.gene64012:CDS |
| AAGTGTTGTTGCCATTGATG+GGG | 0.622533 | 1.4:+742329 | MS.gene64012:CDS |
| CTAATTGTACCCTCAACACA+CGG | 0.626345 | 1.4:-740141 | None:intergenic |
| TAATAGGTTAATGATACTGT+CGG | 0.627342 | 1.4:+741006 | MS.gene64012:intron |
| CATACTAATCAAGTGGACCA+AGG | 0.632792 | 1.4:+740686 | MS.gene64012:CDS |
| TCTCATGTTTGCTACGTCCG+AGG | 0.634285 | 1.4:+740222 | MS.gene64012:CDS |
| TTCAGATCATTAGTACTGAG+TGG | 0.635066 | 1.4:+741264 | MS.gene64012:intron |
| TGTAGTTGCTTGTTTGAACG+AGG | 0.642397 | 1.4:+740842 | MS.gene64012:CDS |
| GATGATATAGGAATGAGAAA+GGG | 0.643987 | 1.4:+740083 | MS.gene64012:intron |
| GTAGCAAACATGAGATCATG+AGG | 0.657026 | 1.4:-740214 | None:intergenic |
| GTGTTGAGGGTACAATTAGG+TGG | 0.658218 | 1.4:+740145 | MS.gene64012:CDS |
| GAAATATAGACACACCCGGA+GGG | 0.661129 | 1.4:-739961 | None:intergenic |
| AACGAGGCATTGGAAAGACA+AGG | 0.661190 | 1.4:+740858 | MS.gene64012:CDS |
| TTACCCGAGTACGAAAGGCA+TGG | 0.671025 | 1.4:-741596 | None:intergenic |
| GTGCCATTCCCAAATTACAA+GGG | 0.674611 | 1.4:+741121 | MS.gene64012:CDS |
| CAGATCATTAGTACTGAGTG+GGG | 0.682773 | 1.4:+741266 | MS.gene64012:intron |
| CACACCCGGAGGGAAGAGTG+TGG | 0.700125 | 1.4:-739951 | None:intergenic |
| TGTGACACAATTGTAAAACG+AGG | 0.711571 | 1.4:+742225 | MS.gene64012:CDS |
| CCTCCTCTATGATAAAGCAG+GGG | 0.712381 | 1.4:+742012 | MS.gene64012:CDS |
| GACACAATTGTAAAACGAGG+CGG | 0.723974 | 1.4:+742228 | MS.gene64012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGTAAAAAAATAAT+CGG | - | chr1.4:741791-741810 | None:intergenic | 10.0% |
| !! | AAATATAGAATTCTAATTAA+TGG | - | chr1.4:740770-740789 | None:intergenic | 10.0% |
| !! | ATTAATTAGAATTCTATATT+TGG | + | chr1.4:740769-740788 | MS.gene64012:intron | 10.0% |
| !!! | AATTTACAAATAAATTTTAC+AGG | + | chr1.4:741930-741949 | MS.gene64012:intron | 10.0% |
| !!! | ATACACAATATTTTTATATA+TGG | + | chr1.4:739996-740015 | MS.gene64012:intron | 10.0% |
| !! | AAAATATTGTGTATAAGTTA+AGG | - | chr1.4:739990-740009 | None:intergenic | 15.0% |
| !! | AAAATTCAAACTCTTTATAT+AGG | + | chr1.4:740809-740828 | MS.gene64012:intron | 15.0% |
| !! | AAAGAAGTAAAAAAATAATC+GGG | - | chr1.4:741790-741809 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTTATCCAAAA+AGG | + | chr1.4:740461-740480 | MS.gene64012:intron | 15.0% |
| !! | TCTACAACAAAATAATAAAA+TGG | - | chr1.4:740417-740436 | None:intergenic | 15.0% |
| !! | TTATTTGAACAAAGAAATAA+AGG | - | chr1.4:741193-741212 | None:intergenic | 15.0% |
| !!! | AATTTGGTGAAATTAAAATT+AGG | + | chr1.4:741726-741745 | MS.gene64012:intron | 15.0% |
| !!! | ACAATATTTTTATATATGGT+TGG | + | chr1.4:740000-740019 | MS.gene64012:intron | 15.0% |
| !!! | ATTTGGTGAAATTAAAATTA+GGG | + | chr1.4:741727-741746 | MS.gene64012:intron | 15.0% |
| !!! | TTTTGGATAAACAATTTAAT+TGG | - | chr1.4:740461-740480 | None:intergenic | 15.0% |
| !! | AATAGTAAAAATCACAAACA+AGG | - | chr1.4:740046-740065 | None:intergenic | 20.0% |
| !! | TAAATATACAAATGCAGTAT+TGG | + | chr1.4:740956-740975 | MS.gene64012:intron | 20.0% |
| !! | TTCTGATTGCTAATATAATT+TGG | + | chr1.4:741710-741729 | MS.gene64012:intron | 20.0% |
| !!! | AAAGCTTTGATACTAATTTT+GGG | + | chr1.4:740505-740524 | MS.gene64012:intron | 20.0% |
| !!! | GATTAATATGATGATGATAT+AGG | + | chr1.4:740071-740090 | MS.gene64012:intron | 20.0% |
| !!! | TAAAGCTTTGATACTAATTT+TGG | + | chr1.4:740504-740523 | MS.gene64012:intron | 20.0% |
| !!! | TGTAAATTGTAAGCATATTT+TGG | - | chr1.4:741918-741937 | None:intergenic | 20.0% |
| ! | AACTGTATTTGATAGAGAAA+TGG | + | chr1.4:741313-741332 | MS.gene64012:CDS | 25.0% |
| ! | ATGAAAATTATCCTCAATAC+AGG | + | chr1.4:742358-742377 | MS.gene64012:CDS | 25.0% |
| ! | CTAATAATTTCCTACCTAAT+AGG | + | chr1.4:740990-741009 | MS.gene64012:intron | 25.0% |
| ! | CTCTATCAAATACAGTTAAA+GGG | - | chr1.4:741310-741329 | None:intergenic | 25.0% |
| ! | GATAAAATGGTTAGTAAAAG+TGG | + | chr1.4:741159-741178 | MS.gene64012:intron | 25.0% |
| ! | GTCTTAAATATTTATGAGAC+TGG | + | chr1.4:740283-740302 | MS.gene64012:intron | 25.0% |
| ! | TAATAGGTTAATGATACTGT+CGG | + | chr1.4:741006-741025 | MS.gene64012:intron | 25.0% |
| ! | TCTCTATCAAATACAGTTAA+AGG | - | chr1.4:741311-741330 | None:intergenic | 25.0% |
| ! | TGTTTCTTCTTCTGATAAAA+TGG | + | chr1.4:741146-741165 | MS.gene64012:CDS | 25.0% |
| ! | TTCAAACTCTTTATATAGGT+AGG | + | chr1.4:740813-740832 | MS.gene64012:intron | 25.0% |
| !! | CATTTTAAACTTAGTGATTG+AGG | - | chr1.4:742130-742149 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTTCACTTAGAT+TGG | - | chr1.4:742193-742212 | None:intergenic | 25.0% |
| !!! | AAATGCAGTATTGGTATAAA+TGG | + | chr1.4:740965-740984 | MS.gene64012:intron | 25.0% |
| !!! | ACTCACTTGTTTTCTATATA+AGG | - | chr1.4:741422-741441 | None:intergenic | 25.0% |
| !!! | CTCACTTGTTTTCTATATAA+GGG | - | chr1.4:741421-741440 | None:intergenic | 25.0% |
| ACTTCTGTATATGATTTGAG+CGG | - | chr1.4:741653-741672 | None:intergenic | 30.0% | |
| AGATACACTTTGTGTTTGTA+AGG | + | chr1.4:741849-741868 | MS.gene64012:intron | 30.0% | |
| ATCTTCTTTGTCCACAAATT+TGG | - | chr1.4:740580-740599 | None:intergenic | 30.0% | |
| CAACAAAATTACGACATAGA+TGG | - | chr1.4:741381-741400 | None:intergenic | 30.0% | |
| CAATCAAAACAAACTAACCT+CGG | - | chr1.4:740242-740261 | None:intergenic | 30.0% | |
| CTCAAATCATATACAGAAGT+AGG | + | chr1.4:741653-741672 | MS.gene64012:intron | 30.0% | |
| GACAGTATCATTAACCTATT+AGG | - | chr1.4:741007-741026 | None:intergenic | 30.0% | |
| GATGATATAGGAATGAGAAA+GGG | + | chr1.4:740083-740102 | MS.gene64012:intron | 30.0% | |
| GTATCATTAACCTATTAGGT+AGG | - | chr1.4:741003-741022 | None:intergenic | 30.0% | |
| GTGATAGAACATTCAAAAGA+TGG | + | chr1.4:742438-742457 | MS.gene64012:CDS | 30.0% | |
| TGATGATATAGGAATGAGAA+AGG | + | chr1.4:740082-740101 | MS.gene64012:intron | 30.0% | |
| TTAACATGCAAAGTAAGCTT+TGG | - | chr1.4:740487-740506 | None:intergenic | 30.0% | |
| TTACTTGCAAGATTCAGTAA+AGG | + | chr1.4:742383-742402 | MS.gene64012:CDS | 30.0% | |
| ! | AAATAAATTTTACAGGACCC+CGG | + | chr1.4:741937-741956 | MS.gene64012:intron | 30.0% |
| ! | CTGTTTGATTTCATTGCTTT+GGG | + | chr1.4:740549-740568 | MS.gene64012:CDS | 30.0% |
| ! | TCAATAGAAGTTTGTTTGAC+AGG | - | chr1.4:740660-740679 | None:intergenic | 30.0% |
| ! | TGAAAGAAAAACAGTTCTAG+AGG | + | chr1.4:742200-742219 | MS.gene64012:CDS | 30.0% |
| ! | TGTTTGATTTCATTGCTTTG+GGG | + | chr1.4:740550-740569 | MS.gene64012:CDS | 30.0% |
| !! | AAACAAACTTCTATTGACTC+TGG | + | chr1.4:740663-740682 | MS.gene64012:CDS | 30.0% |
| !! | AGGTTGATATGTACTTTCTT+GGG | - | chr1.4:742110-742129 | None:intergenic | 30.0% |
| !! | ATTTTTGAGAAGACAATCTC+AGG | + | chr1.4:741484-741503 | MS.gene64012:CDS | 30.0% |
| !! | GTTGTTTTCATAAGTTCTCT+CGG | - | chr1.4:740309-740328 | None:intergenic | 30.0% |
| !! | TTGTTTTATGCATTGGATCT+TGG | + | chr1.4:740106-740125 | MS.gene64012:CDS | 30.0% |
| AAAATGGAAGACGACTCAAA+AGG | + | chr1.4:742288-742307 | MS.gene64012:CDS | 35.0% | |
| AAAATTTACCCGAGTACGAA+AGG | - | chr1.4:741604-741623 | None:intergenic | 35.0% | |
| ACAATCTCAGGAATGTATCT+AGG | + | chr1.4:741496-741515 | MS.gene64012:CDS | 35.0% | |
| AGAAACATGCCCTTGTAATT+TGG | - | chr1.4:741133-741152 | None:intergenic | 35.0% | |
| ATACTAATCAAGTGGACCAA+GGG | + | chr1.4:740687-740706 | MS.gene64012:CDS | 35.0% | |
| ATACTACGACAATGATGCTA+AGG | + | chr1.4:741047-741066 | MS.gene64012:CDS | 35.0% | |
| CGAGTTTCTGTAATCTATCT+TGG | - | chr1.4:740378-740397 | None:intergenic | 35.0% | |
| CTGAAGAGGAAGGTTTATTT+GGG | + | chr1.4:741551-741570 | MS.gene64012:CDS | 35.0% | |
| GAAACATGCCCTTGTAATTT+GGG | - | chr1.4:741132-741151 | None:intergenic | 35.0% | |
| GAAAGAAATATAGACACACC+CGG | - | chr1.4:739968-739987 | None:intergenic | 35.0% | |
| GAACATTCAAAAGATGGTTC+TGG | + | chr1.4:742444-742463 | MS.gene64012:CDS | 35.0% | |
| GATTCAGTAAAGGAGCTATT+AGG | + | chr1.4:742393-742412 | MS.gene64012:CDS | 35.0% | |
| GCAGGTAATGTAAAACACTA+AGG | - | chr1.4:742088-742107 | None:intergenic | 35.0% | |
| TAGATTGGATTCAACCTGAA+GGG | - | chr1.4:742178-742197 | None:intergenic | 35.0% | |
| TGGGATGATATAATATACGC+AGG | + | chr1.4:740524-740543 | MS.gene64012:intron | 35.0% | |
| TGTAGGGATTCTGCAAAAAA+TGG | + | chr1.4:742272-742291 | MS.gene64012:CDS | 35.0% | |
| TGTGACACAATTGTAAAACG+AGG | + | chr1.4:742225-742244 | MS.gene64012:CDS | 35.0% | |
| TTAGATTGGATTCAACCTGA+AGG | - | chr1.4:742179-742198 | None:intergenic | 35.0% | |
| ! | AAGGCATGGACAATTTTTGA+GGG | - | chr1.4:741585-741604 | None:intergenic | 35.0% |
| ! | GCTGTTTGATTTCATTGCTT+TGG | + | chr1.4:740548-740567 | MS.gene64012:CDS | 35.0% |
| ! | TCAGATCATTAGTACTGAGT+GGG | + | chr1.4:741265-741284 | MS.gene64012:intron | 35.0% |
| ! | TTCAGATCATTAGTACTGAG+TGG | + | chr1.4:741264-741283 | MS.gene64012:intron | 35.0% |
| ! | TTTTATGCATTGGATCTTGG+AGG | + | chr1.4:740109-740128 | MS.gene64012:CDS | 35.0% |
| !! | AAAGGCATGGACAATTTTTG+AGG | - | chr1.4:741586-741605 | None:intergenic | 35.0% |
| !! | AAAGTAAGCTTTGGCCTTTT+TGG | - | chr1.4:740478-740497 | None:intergenic | 35.0% |
| !! | GAAAGGGTTGTTTTATGCAT+TGG | + | chr1.4:740099-740118 | MS.gene64012:CDS | 35.0% |
| !! | GACTCAAAAGGTGTTATCTT+TGG | + | chr1.4:742300-742319 | MS.gene64012:CDS | 35.0% |
| !! | GAGGTTGATATGTACTTTCT+TGG | - | chr1.4:742111-742130 | None:intergenic | 35.0% |
| !! | TCAAAAGATGGTTCTGGTAT+TGG | + | chr1.4:742450-742469 | MS.gene64012:CDS | 35.0% |
| !! | TGGACATAAGTTGGTATCAT+GGG | - | chr1.4:739934-739953 | None:intergenic | 35.0% |
| !!! | GCTAAGGTTGCTGTTATTTT+AGG | + | chr1.4:741063-741082 | MS.gene64012:CDS | 35.0% |
| !!! | GTTGCTGTTATTTTAGGAAC+TGG | + | chr1.4:741069-741088 | MS.gene64012:CDS | 35.0% |
| AACAAACTTCCGTGTGTTGA+GGG | + | chr1.4:740132-740151 | MS.gene64012:CDS | 40.0% | |
| ACTCTGGCATACTAATCAAG+TGG | + | chr1.4:740679-740698 | MS.gene64012:CDS | 40.0% | |
| AGATGGTGCGAAAACTTACA+TGG | - | chr1.4:741364-741383 | None:intergenic | 40.0% | |
| ATGCCCTTGTAATTTGGGAA+TGG | - | chr1.4:741127-741146 | None:intergenic | 40.0% | |
| ATTGTCGTAGTATTCTGCTC+CGG | - | chr1.4:741040-741059 | None:intergenic | 40.0% | |
| ATTTCTCTCTTTCTTCCTGG+AGG | - | chr1.4:740618-740637 | None:intergenic | 40.0% | |
| CATACTAATCAAGTGGACCA+AGG | + | chr1.4:740686-740705 | MS.gene64012:CDS | 40.0% | |
| CCAATTTCTCTCTTTCTTCC+TGG | - | chr1.4:740621-740640 | None:intergenic | 40.0% | |
| CCAGGAAGAAAGAGAGAAAT+TGG | + | chr1.4:740618-740637 | MS.gene64012:CDS | 40.0% | |
| CTAATTGTACCCTCAACACA+CGG | - | chr1.4:740144-740163 | None:intergenic | 40.0% | |
| GACACAATTGTAAAACGAGG+CGG | + | chr1.4:742228-742247 | MS.gene64012:CDS | 40.0% | |
| GATAGATTTCATTTCCCTCC+AGG | + | chr1.4:740600-740619 | MS.gene64012:CDS | 40.0% | |
| GCTGAAGAGGAAGGTTTATT+TGG | + | chr1.4:741550-741569 | MS.gene64012:CDS | 40.0% | |
| GTAGCAAACATGAGATCATG+AGG | - | chr1.4:740217-740236 | None:intergenic | 40.0% | |
| TGATATGTACTTTCTTGGGC+AGG | - | chr1.4:742106-742125 | None:intergenic | 40.0% | |
| TGCAAGTAAGTCCTGTATTG+AGG | - | chr1.4:742372-742391 | None:intergenic | 40.0% | |
| TGTAGTTGCTTGTTTGAACG+AGG | + | chr1.4:740842-740861 | MS.gene64012:CDS | 40.0% | |
| TTACCCCTGCTTTATCATAG+AGG | - | chr1.4:742018-742037 | None:intergenic | 40.0% | |
| TTCATACAAACCCCCATCAA+TGG | - | chr1.4:742343-742362 | None:intergenic | 40.0% | |
| TTTCTCTCTTTCTTCCTGGA+GGG | - | chr1.4:740617-740636 | None:intergenic | 40.0% | |
| ! | AAGTGTTGTTGCCATTGATG+GGG | + | chr1.4:742329-742348 | MS.gene64012:CDS | 40.0% |
| ! | AGTGCCATTCCCAAATTACA+AGG | + | chr1.4:741120-741139 | MS.gene64012:CDS | 40.0% |
| ! | CAGATCATTAGTACTGAGTG+GGG | + | chr1.4:741266-741285 | MS.gene64012:intron | 40.0% |
| ! | GTGCCATTCCCAAATTACAA+GGG | + | chr1.4:741121-741140 | MS.gene64012:CDS | 40.0% |
| !! | AAAGATGGTTCTGGTATTGG+AGG | + | chr1.4:742453-742472 | MS.gene64012:CDS | 40.0% |
| !! | AGAAGTGTTGTTGCCATTGA+TGG | + | chr1.4:742327-742346 | MS.gene64012:CDS | 40.0% |
| !! | GAAGTGTTGTTGCCATTGAT+GGG | + | chr1.4:742328-742347 | MS.gene64012:CDS | 40.0% |
| !! | GTGGACATAAGTTGGTATCA+TGG | - | chr1.4:739935-739954 | None:intergenic | 40.0% |
| AAGGGAACAAGTGAGTGTCA+AGG | - | chr1.4:742160-742179 | None:intergenic | 45.0% | |
| AATCCCTACAATTCCTGCAC+CGG | - | chr1.4:742262-742281 | None:intergenic | 45.0% | |
| AGAAATATAGACACACCCGG+AGG | - | chr1.4:739965-739984 | None:intergenic | 45.0% | |
| CCCTCCTCTATGATAAAGCA+GGG | + | chr1.4:742011-742030 | MS.gene64012:CDS | 45.0% | |
| CCCTGCTTTATCATAGAGGA+GGG | - | chr1.4:742014-742033 | None:intergenic | 45.0% | |
| CCTCCTCTATGATAAAGCAG+GGG | + | chr1.4:742012-742031 | MS.gene64012:CDS | 45.0% | |
| CGAAAACTTACATGGTGACC+GGG | - | chr1.4:741356-741375 | None:intergenic | 45.0% | |
| CTGGCGATTTACAAGCAGTT+GGG | + | chr1.4:741987-742006 | MS.gene64012:CDS | 45.0% | |
| GAAATATAGACACACCCGGA+GGG | - | chr1.4:739964-739983 | None:intergenic | 45.0% | |
| GAACAAACTTCCGTGTGTTG+AGG | + | chr1.4:740131-740150 | MS.gene64012:CDS | 45.0% | |
| GAGACGAGTGCTAGTCAATA+TGG | + | chr1.4:741528-741547 | MS.gene64012:CDS | 45.0% | |
| GATGCTGCTAGTATCAATCC+CGG | + | chr1.4:741335-741354 | MS.gene64012:CDS | 45.0% | |
| GCCAGAATTATCTTGCTGCA+TGG | - | chr1.4:741972-741991 | None:intergenic | 45.0% | |
| GCCATGCAGCAAGATAATTC+TGG | + | chr1.4:741968-741987 | MS.gene64012:CDS | 45.0% | |
| GCGAAAACTTACATGGTGAC+CGG | - | chr1.4:741357-741376 | None:intergenic | 45.0% | |
| GCTAGTCAATATGGCTGAAG+AGG | + | chr1.4:741537-741556 | MS.gene64012:CDS | 45.0% | |
| GTCAATATGGCTGAAGAGGA+AGG | + | chr1.4:741541-741560 | MS.gene64012:CDS | 45.0% | |
| TCCAGAAACAGCAAAACCCT+TGG | - | chr1.4:740706-740725 | None:intergenic | 45.0% | |
| TCCCTCCTCTATGATAAAGC+AGG | + | chr1.4:742010-742029 | MS.gene64012:CDS | 45.0% | |
| TCTGGCGATTTACAAGCAGT+TGG | + | chr1.4:741986-742005 | MS.gene64012:CDS | 45.0% | |
| TGCTTGTTTGAACGAGGCAT+TGG | + | chr1.4:740848-740867 | MS.gene64012:CDS | 45.0% | |
| TTGTCCATGCCTTTCGTACT+CGG | + | chr1.4:741592-741611 | MS.gene64012:CDS | 45.0% | |
| ! | AGTGTTGTTGCCATTGATGG+GGG | + | chr1.4:742330-742349 | MS.gene64012:CDS | 45.0% |
| ! | CGTGTGTTGAGGGTACAATT+AGG | + | chr1.4:740142-740161 | MS.gene64012:CDS | 45.0% |
| ! | GGAAGAGTGTGGACATAAGT+TGG | - | chr1.4:739943-739962 | None:intergenic | 45.0% |
| ! | GTGTTGAGGGTACAATTAGG+TGG | + | chr1.4:740145-740164 | MS.gene64012:CDS | 45.0% |
| !! | AACGAGGCATTGGAAAGACA+AGG | + | chr1.4:740858-740877 | MS.gene64012:CDS | 45.0% |
| !! | TGGTATTGGAGGTGCTCTAT+TGG | + | chr1.4:742464-742483 | MS.gene64012:CDS | 45.0% |
| !! | TTTGGGGCTAGCCAAATTTG+TGG | + | chr1.4:740566-740585 | MS.gene64012:CDS | 45.0% |
| !!! | ACCAAGGGTTTTGCTGTTTC+TGG | + | chr1.4:740702-740721 | MS.gene64012:CDS | 45.0% |
| ATGTCTTCTCAAATGCGGGC+TGG | + | chr1.4:739880-739899 | MS.gene64012:CDS | 50.0% | |
| CCCCTGCTTTATCATAGAGG+AGG | - | chr1.4:742015-742034 | None:intergenic | 50.0% | |
| CTGGGCTTTCCTCTGATGAT+GGG | + | chr1.4:739899-739918 | MS.gene64012:CDS | 50.0% | |
| GACACTCACTTGTTCCCTTC+AGG | + | chr1.4:742161-742180 | MS.gene64012:intron | 50.0% | |
| GATACTGTCGGAACACTAGC+CGG | + | chr1.4:741018-741037 | MS.gene64012:CDS | 50.0% | |
| TAGCCGGTGCAGGAATTGTA+GGG | + | chr1.4:742256-742275 | MS.gene64012:CDS | 50.0% | |
| TATGTCCACACTCTTCCCTC+CGG | + | chr1.4:739946-739965 | MS.gene64012:CDS | 50.0% | |
| TGTCCATGCCTTTCGTACTC+GGG | + | chr1.4:741593-741612 | MS.gene64012:CDS | 50.0% | |
| TGTCTTCTCAAATGCGGGCT+GGG | + | chr1.4:739881-739900 | MS.gene64012:CDS | 50.0% | |
| TTACCCGAGTACGAAAGGCA+TGG | - | chr1.4:741599-741618 | None:intergenic | 50.0% | |
| TTAGCCGGTGCAGGAATTGT+AGG | + | chr1.4:742255-742274 | MS.gene64012:CDS | 50.0% | |
| ! | AGTTGGTATCATGGGAAGCC+CGG | - | chr1.4:739926-739945 | None:intergenic | 50.0% |
| ! | GAGTGGGGTGCTTTCTCAAA+TGG | + | chr1.4:741281-741300 | MS.gene64012:CDS | 50.0% |
| ! | TCTCATGTTTGCTACGTCCG+AGG | + | chr1.4:740222-740241 | MS.gene64012:CDS | 50.0% |
| AAACGAGGCGGTAGCTTAGC+CGG | + | chr1.4:742240-742259 | MS.gene64012:CDS | 55.0% | |
| ATGTCCACACTCTTCCCTCC+GGG | + | chr1.4:739947-739966 | MS.gene64012:CDS | 55.0% | |
| GCTGGGCTTTCCTCTGATGA+TGG | + | chr1.4:739898-739917 | MS.gene64012:CDS | 55.0% | |
| GTTGGTATCATGGGAAGCCC+GGG | - | chr1.4:739925-739944 | None:intergenic | 55.0% | |
| TGCTGCATGGCGCTTAGATC+CGG | - | chr1.4:741959-741978 | None:intergenic | 55.0% | |
| !! | CTTTCCTCTGATGATGGGCC+CGG | + | chr1.4:739904-739923 | MS.gene64012:CDS | 55.0% |
| !! | TTTCCTCTGATGATGGGCCC+GGG | + | chr1.4:739905-739924 | MS.gene64012:CDS | 55.0% |
| CTGCATGGCGCTTAGATCCG+GGG | - | chr1.4:741957-741976 | None:intergenic | 60.0% | |
| GCTGCATGGCGCTTAGATCC+GGG | - | chr1.4:741958-741977 | None:intergenic | 60.0% | |
| AAGCCCGGGCCCATCATCAG+AGG | - | chr1.4:739911-739930 | None:intergenic | 65.0% | |
| CACACCCGGAGGGAAGAGTG+TGG | - | chr1.4:739954-739973 | None:intergenic | 65.0% | |
| GGCGGTAGCTTAGCCGGTGC+AGG | + | chr1.4:742246-742265 | MS.gene64012:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 739880 | 742518 | 739880 | ID=MS.gene64012 |
| chr1.4 | mRNA | 739880 | 742518 | 739880 | ID=MS.gene64012.t1;Parent=MS.gene64012 |
| chr1.4 | exon | 739880 | 739968 | 739880 | ID=MS.gene64012.t1.exon1;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 739880 | 739968 | 739880 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 740093 | 740243 | 740093 | ID=MS.gene64012.t1.exon2;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 740093 | 740243 | 740093 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 740546 | 740728 | 740546 | ID=MS.gene64012.t1.exon3;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 740546 | 740728 | 740546 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 740831 | 740905 | 740831 | ID=MS.gene64012.t1.exon4;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 740831 | 740905 | 740831 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 741012 | 741167 | 741012 | ID=MS.gene64012.t1.exon5;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 741012 | 741167 | 741012 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 741269 | 741364 | 741269 | ID=MS.gene64012.t1.exon6;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 741269 | 741364 | 741269 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 741484 | 741614 | 741484 | ID=MS.gene64012.t1.exon7;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 741484 | 741614 | 741484 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 741952 | 742033 | 741952 | ID=MS.gene64012.t1.exon8;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 741952 | 742033 | 741952 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| chr1.4 | exon | 742183 | 742518 | 742183 | ID=MS.gene64012.t1.exon9;Parent=MS.gene64012.t1 |
| chr1.4 | CDS | 742183 | 742518 | 742183 | ID=cds.MS.gene64012.t1;Parent=MS.gene64012.t1 |
| Gene Sequence |
| Protein sequence |
