Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64085.t1 | GAV59023.1 | 89.7 | 319 | 33 | 0 | 15 | 333 | 651 | 969 | 6.90E-128 | 467.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64085.t1 | O48844 | 82.2 | 321 | 54 | 2 | 15 | 332 | 646 | 966 | 8.3e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64085.t1 | A0A2K3LA10 | 91.8 | 319 | 24 | 1 | 15 | 333 | 120 | 436 | 5.0e-128 | 467.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene64085 | -0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene049861 | MS.gene64085 | -0.825021 | 5.88E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene64085 | -0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene051987 | MS.gene64085 | -0.812587 | 3.93E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene64085 | 0.843077 | 1.75E-58 | -1.69E-46 |
| MS.gene057999 | MS.gene64085 | -0.817234 | 3.66E-52 | -1.69E-46 |
| MS.gene058074 | MS.gene64085 | -0.821157 | 4.69E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene64085 | 0.876804 | 1.04E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64085.t1 | MTR_8g106120 | 95.775 | 355 | 15 | 0 | 15 | 369 | 647 | 1001 | 0.0 | 631 |
| MS.gene64085.t1 | MTR_8g106120 | 95.775 | 355 | 15 | 0 | 15 | 369 | 425 | 779 | 0.0 | 630 |
| MS.gene64085.t1 | MTR_2g067250 | 95.211 | 355 | 17 | 0 | 15 | 369 | 645 | 999 | 0.0 | 627 |
| MS.gene64085.t1 | MTR_3g009940 | 74.820 | 139 | 13 | 2 | 62 | 200 | 224 | 340 | 3.30e-61 | 201 |
| MS.gene64085.t1 | MTR_8g106120 | 93.333 | 75 | 5 | 0 | 15 | 89 | 647 | 721 | 1.30e-37 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64085.t1 | AT2G32730 | 79.722 | 360 | 67 | 5 | 15 | 369 | 646 | 1004 | 0.0 | 535 |
| MS.gene64085.t1 | AT1G04810 | 74.380 | 363 | 77 | 4 | 15 | 369 | 646 | 1000 | 1.06e-171 | 504 |
Find 104 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCAAGATGGGTGCAATTT+TGG | 0.199961 | 5.1:-50839588 | MS.gene64085:CDS |
| GAGGGTACCAATTCCAAAAT+TGG | 0.205557 | 5.1:+50839462 | None:intergenic |
| CCAGTTAAGTTGGCACCTTC+AGG | 0.213525 | 5.1:-50838840 | MS.gene64085:CDS |
| CCTGAAGGTGCCAACTTAAC+TGG | 0.312725 | 5.1:+50838840 | None:intergenic |
| CTCGGGCTCTGATTTCTTCT+CGG | 0.318313 | 5.1:+50838950 | None:intergenic |
| GGCTCTGATTTCTTCTCGGT+TGG | 0.319932 | 5.1:+50838954 | None:intergenic |
| GTGGGAACTGTTGTAGGCTT+GGG | 0.346706 | 5.1:+50839323 | None:intergenic |
| TGAGCAGGAACCACTCTTGC+TGG | 0.358571 | 5.1:+50838903 | None:intergenic |
| ATTCGCATGTTGGAACCTTC+AGG | 0.366519 | 5.1:-50839725 | MS.gene64085:intron |
| AGTCTTAGAAAGTAGTCTTA+TGG | 0.371639 | 5.1:+50839529 | None:intergenic |
| TTTCTTACTAGCCCTAGCTT+TGG | 0.389094 | 5.1:+50839247 | None:intergenic |
| TTTGTTGGAGCCTCTGACTT+CGG | 0.391547 | 5.1:-50839823 | MS.gene64085:CDS |
| TAGTGACGCCATATCTTTGT+TGG | 0.394847 | 5.1:-50839838 | MS.gene64085:CDS |
| GGTGGGAACTGTTGTAGGCT+TGG | 0.409702 | 5.1:+50839322 | None:intergenic |
| AGCAAGAGTGGTTCCTGCTC+AGG | 0.424076 | 5.1:-50838901 | MS.gene64085:CDS |
| TCAAATCTATTTCATAAGCT+TGG | 0.424410 | 5.1:-50839441 | MS.gene64085:CDS |
| CAGTTAAGTTGGCACCTTCA+GGG | 0.424877 | 5.1:-50838839 | MS.gene64085:CDS |
| TCAGTAATAGCAAGAACTTC+AGG | 0.425883 | 5.1:+50838783 | None:intergenic |
| CGTGTATTCCAGGCGACAAT+TGG | 0.427256 | 5.1:-50839645 | MS.gene64085:intron |
| CTGATAGGAGTATCAGAATC+AGG | 0.428436 | 5.1:+50839931 | None:intergenic |
| ACATCAACTGCTGGCGGGTC+AGG | 0.431417 | 5.1:-50838744 | MS.gene64085:CDS |
| GGCATTTCCTGTGCGGGTAC+AGG | 0.433272 | 5.1:-50839864 | MS.gene64085:CDS |
| CAGATATGTTCCAGTTAAGT+TGG | 0.438153 | 5.1:-50838850 | MS.gene64085:CDS |
| GCTCTGATTTCTTCTCGGTT+GGG | 0.438466 | 5.1:+50838955 | None:intergenic |
| CAGAGGCTCCAACAAAGATA+TGG | 0.441117 | 5.1:+50839830 | None:intergenic |
| ATCAGCAATGGCTGTGGATG+AGG | 0.444703 | 5.1:-50838700 | MS.gene64085:CDS |
| TGAGACAAGAACTCAAACTT+TGG | 0.451437 | 5.1:+50839371 | None:intergenic |
| ATCAGAATCAGGAAACAATC+CGG | 0.452493 | 5.1:+50839942 | None:intergenic |
| GCCTCTGAAATCCTTGATGC+TGG | 0.454372 | 5.1:-50839566 | MS.gene64085:CDS |
| TTTGTTAGAATCTCAAAAGT+AGG | 0.456278 | 5.1:+50838927 | None:intergenic |
| GATGAAGAACTCTGCAATCC+TGG | 0.462319 | 5.1:+50838720 | None:intergenic |
| GCCATGGGCATTTCCTGTGC+GGG | 0.471638 | 5.1:-50839870 | MS.gene64085:CDS |
| TTAATGAACTTCTCCTGAGC+AGG | 0.471986 | 5.1:+50838888 | None:intergenic |
| GGCTTCTCCATCCTTCTCAC+TGG | 0.480813 | 5.1:+50839142 | None:intergenic |
| CATTTCTTCCGCCAGCATCA+AGG | 0.480834 | 5.1:+50839555 | None:intergenic |
| AGCTTATGAAATAGATTTGA+GGG | 0.481394 | 5.1:+50839444 | None:intergenic |
| TGACCATAGCCATTGCTATG+AGG | 0.488921 | 5.1:+50839772 | None:intergenic |
| TCTACATCAGCTCCAAATGC+TGG | 0.489660 | 5.1:-50839179 | MS.gene64085:CDS |
| TCAGCTCCAAATGCTGGAAA+AGG | 0.489955 | 5.1:-50839173 | MS.gene64085:CDS |
| CATCAGCTAAGGCCAAAGCT+AGG | 0.496303 | 5.1:-50839259 | MS.gene64085:CDS |
| CACAGGAAATGCCCATGGCA+AGG | 0.503828 | 5.1:+50839874 | None:intergenic |
| TAAGAAAGCTGAGGAACAGA+AGG | 0.510396 | 5.1:-50839231 | MS.gene64085:CDS |
| GTGATGGTGGGAACTGTTGT+AGG | 0.512657 | 5.1:+50839317 | None:intergenic |
| GACCATAGCCATTGCTATGA+GGG | 0.517067 | 5.1:+50839773 | None:intergenic |
| TACAATCCACATGTTCGTTA+CGG | 0.520609 | 5.1:-50839903 | MS.gene64085:CDS |
| GTGGATTGTATGATTCTGAT+AGG | 0.523060 | 5.1:+50839916 | None:intergenic |
| TTCTTCATCAGCAATGGCTG+TGG | 0.523176 | 5.1:-50838706 | MS.gene64085:CDS |
| TTACGGAGCAGCCCTTGCCA+TGG | 0.523398 | 5.1:-50839886 | MS.gene64085:CDS |
| TAGAATCTCAAAAGTAGGCT+CGG | 0.523778 | 5.1:+50838932 | None:intergenic |
| ACTGCTGGCGGGTCAGGACC+AGG | 0.525643 | 5.1:-50838738 | MS.gene64085:CDS |
| GAGGATACCATGAGCAAGAT+GGG | 0.527104 | 5.1:-50839599 | MS.gene64085:CDS |
| AAGCTTATGAAATAGATTTG+AGG | 0.528799 | 5.1:+50839443 | None:intergenic |
| TACGGAGCAGCCCTTGCCAT+GGG | 0.530484 | 5.1:-50839885 | MS.gene64085:CDS |
| AGAATCTCAAAAGTAGGCTC+GGG | 0.532463 | 5.1:+50838933 | None:intergenic |
| ACAGGAAATGCCCATGGCAA+GGG | 0.533095 | 5.1:+50839875 | None:intergenic |
| GAAGCTAGTGATTCGCATGT+TGG | 0.533835 | 5.1:-50839735 | MS.gene64085:CDS |
| CATAGCAATGGCTATGGTCA+TGG | 0.535078 | 5.1:-50839769 | MS.gene64085:CDS |
| GATGTTGACAAAACAGCAGT+TGG | 0.538017 | 5.1:+50839278 | None:intergenic |
| TCGAATGGTTGAGGAGGTTG+AGG | 0.541370 | 5.1:+50838675 | None:intergenic |
| TCAGAATCAGGAAACAATCC+GGG | 0.542904 | 5.1:+50839943 | None:intergenic |
| TGCCATGGGCATTTCCTGTG+CGG | 0.542907 | 5.1:-50839871 | MS.gene64085:CDS |
| TTCCTACACTGCAGACTCCC+CGG | 0.542959 | 5.1:-50839961 | MS.gene64085:CDS |
| GATAAAATTACTGCAGTGGT+TGG | 0.543682 | 5.1:-50839500 | MS.gene64085:CDS |
| TGAGGATACCATGAGCAAGA+TGG | 0.547720 | 5.1:-50839600 | MS.gene64085:CDS |
| GCATCTACCACATCAACTGC+TGG | 0.547960 | 5.1:-50838753 | MS.gene64085:CDS |
| TTTGGAGCTGATGTAGAGTC+GGG | 0.551268 | 5.1:+50839185 | None:intergenic |
| ACTAAGACCTGTACCCGCAC+AGG | 0.555863 | 5.1:+50839857 | None:intergenic |
| TGGGAACTGTTGTAGGCTTG+GGG | 0.558136 | 5.1:+50839324 | None:intergenic |
| AGGAAAGTCTTCCAGTGAGA+AGG | 0.561790 | 5.1:-50839153 | MS.gene64085:CDS |
| AAGTCTTCCAGTGAGAAGGA+TGG | 0.561796 | 5.1:-50839149 | MS.gene64085:CDS |
| GCAGAGTTCTTCATCAGCAA+TGG | 0.561955 | 5.1:-50838712 | MS.gene64085:CDS |
| TGCCCTCATAGCAATGGCTA+TGG | 0.563797 | 5.1:-50839775 | MS.gene64085:CDS |
| ATCAGCTAAGGCCAAAGCTA+GGG | 0.564764 | 5.1:-50839258 | MS.gene64085:CDS |
| AAGTTTCACTGTTGAAGTGA+TGG | 0.565575 | 5.1:+50839301 | None:intergenic |
| TAATGTATGCATTACATGCA+TGG | 0.566086 | 5.1:+50839121 | None:intergenic |
| CTACCACATCAACTGCTGGC+GGG | 0.566474 | 5.1:-50838749 | MS.gene64085:CDS |
| ATTTGGAGCTGATGTAGAGT+CGG | 0.567708 | 5.1:+50839184 | None:intergenic |
| ACTTAAGATGTGTACTCGAA+TGG | 0.573319 | 5.1:+50838660 | None:intergenic |
| GCAGTTGATGTGGTAGATGC+AGG | 0.574329 | 5.1:+50838756 | None:intergenic |
| TTCAGACCGATTAAAGCCGT+TGG | 0.577561 | 5.1:+50839410 | None:intergenic |
| TCTAACAAATCCAGCAAGAG+TGG | 0.582580 | 5.1:-50838913 | MS.gene64085:CDS |
| AATTGCACCCATCTTGCTCA+TGG | 0.584856 | 5.1:+50839592 | None:intergenic |
| GCAAGAACTTCAGGCTCGGT+AGG | 0.586206 | 5.1:+50838792 | None:intergenic |
| GATGTGTACTCGAATGGTTG+AGG | 0.593404 | 5.1:+50838666 | None:intergenic |
| GCATGATAAAATTACTGCAG+TGG | 0.601584 | 5.1:-50839504 | MS.gene64085:CDS |
| TAGGGCTAGTAAGAAAGCTG+AGG | 0.611747 | 5.1:-50839240 | MS.gene64085:CDS |
| ATCCGGGGAGTCTGCAGTGT+AGG | 0.612096 | 5.1:+50839959 | None:intergenic |
| GGGGAGTCTGCAGTGTAGGA+AGG | 0.614369 | 5.1:+50839963 | None:intergenic |
| TCAAGGTGCCCTCATAGCAA+TGG | 0.614983 | 5.1:-50839781 | MS.gene64085:CDS |
| TTTCACTGTTGAAGTGATGG+TGG | 0.615784 | 5.1:+50839304 | None:intergenic |
| TGACCCGCCAGCAGTTGATG+TGG | 0.617089 | 5.1:+50838746 | None:intergenic |
| TTAAGAAGCACAAACCCTGA+AGG | 0.618792 | 5.1:+50838825 | None:intergenic |
| TCTACCACATCAACTGCTGG+CGG | 0.628294 | 5.1:-50838750 | MS.gene64085:CDS |
| GCCAGCATCAAGGATTTCAG+AGG | 0.634124 | 5.1:+50839565 | None:intergenic |
| TTCACTGTTGAAGTGATGGT+GGG | 0.635183 | 5.1:+50839305 | None:intergenic |
| TGGTATCCTCATGCTTGTCG+AGG | 0.635300 | 5.1:+50839612 | None:intergenic |
| TCTGAAATCCTTGATGCTGG+CGG | 0.637161 | 5.1:-50839563 | MS.gene64085:CDS |
| TCAACAACATCCGAAGTCAG+AGG | 0.639949 | 5.1:+50839813 | None:intergenic |
| AATAGCAAGAACTTCAGGCT+CGG | 0.640998 | 5.1:+50838788 | None:intergenic |
| AATTATCCTCGACAAGCATG+AGG | 0.649542 | 5.1:-50839618 | MS.gene64085:CDS |
| GCTGCTCCGTAACGAACATG+TGG | 0.652236 | 5.1:+50839897 | None:intergenic |
| ACCCGCACAGGAAATGCCCA+TGG | 0.658233 | 5.1:+50839869 | None:intergenic |
| CAGAATCAGGAAACAATCCG+GGG | 0.709015 | 5.1:+50839944 | None:intergenic |
| GTGTACTCGAATGGTTGAGG+AGG | 0.711248 | 5.1:+50838669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCGAAACTTAATTGTTTTAA+AGG | - | chr5.1:50839646-50839665 | MS.gene64085:intron | 20.0% |
| ! | AAGCTTATGAAATAGATTTG+AGG | + | chr5.1:50839191-50839210 | None:intergenic | 25.0% |
| ! | AGCTTATGAAATAGATTTGA+GGG | + | chr5.1:50839190-50839209 | None:intergenic | 25.0% |
| ! | TCAAATCTATTTCATAAGCT+TGG | - | chr5.1:50839190-50839209 | MS.gene64085:CDS | 25.0% |
| ! | TTTGTTAGAATCTCAAAAGT+AGG | + | chr5.1:50839707-50839726 | None:intergenic | 25.0% |
| !! | GAAGTTCATTAAATTTTTGC+AGG | - | chr5.1:50839754-50839773 | MS.gene64085:CDS | 25.0% |
| !! | GGTAAGGAAAGTATATTATT+TGG | - | chr5.1:50838927-50838946 | MS.gene64085:CDS | 25.0% |
| AATATACTTTCCTTACCTGA+AGG | + | chr5.1:50838924-50838943 | None:intergenic | 30.0% | |
| TAATGTATGCATTACATGCA+TGG | + | chr5.1:50839513-50839532 | None:intergenic | 30.0% | |
| ! | AGTCTTAGAAAGTAGTCTTA+TGG | + | chr5.1:50839105-50839124 | None:intergenic | 30.0% |
| !!! | TTTTCAGCCAATTTTGGAAT+TGG | - | chr5.1:50839162-50839181 | MS.gene64085:CDS | 30.0% |
| AAGTTTCACTGTTGAAGTGA+TGG | + | chr5.1:50839333-50839352 | None:intergenic | 35.0% | |
| ATCAGAATCAGGAAACAATC+CGG | + | chr5.1:50838692-50838711 | None:intergenic | 35.0% | |
| CAGATATGTTCCAGTTAAGT+TGG | - | chr5.1:50839781-50839800 | MS.gene64085:CDS | 35.0% | |
| GATAAAATTACTGCAGTGGT+TGG | - | chr5.1:50839131-50839150 | MS.gene64085:intron | 35.0% | |
| GCATGATAAAATTACTGCAG+TGG | - | chr5.1:50839127-50839146 | MS.gene64085:intron | 35.0% | |
| TACAATCCACATGTTCGTTA+CGG | - | chr5.1:50838728-50838747 | MS.gene64085:CDS | 35.0% | |
| TAGAATCTCAAAAGTAGGCT+CGG | + | chr5.1:50839702-50839721 | None:intergenic | 35.0% | |
| TCAGTAATAGCAAGAACTTC+AGG | + | chr5.1:50839851-50839870 | None:intergenic | 35.0% | |
| TGAGACAAGAACTCAAACTT+TGG | + | chr5.1:50839263-50839282 | None:intergenic | 35.0% | |
| ! | GTGGATTGTATGATTCTGAT+AGG | + | chr5.1:50838718-50838737 | None:intergenic | 35.0% |
| ! | TGTTTTGTCAACATCAGCTA+AGG | - | chr5.1:50839361-50839380 | MS.gene64085:CDS | 35.0% |
| ! | TTGCAGTTTTCAGCCAATTT+TGG | - | chr5.1:50839156-50839175 | MS.gene64085:CDS | 35.0% |
| ! | TTGGGGTATTCAAAAAGTGA+AGG | + | chr5.1:50839293-50839312 | None:intergenic | 35.0% |
| !! | TTTTCACCAACGGCTTTAAT+CGG | - | chr5.1:50839215-50839234 | MS.gene64085:CDS | 35.0% |
| !!! | GTTGTTGATTTTGTTCGTCA+AGG | - | chr5.1:50838833-50838852 | MS.gene64085:CDS | 35.0% |
| AATAGCAAGAACTTCAGGCT+CGG | + | chr5.1:50839846-50839865 | None:intergenic | 40.0% | |
| AATTATCCTCGACAAGCATG+AGG | - | chr5.1:50839013-50839032 | MS.gene64085:intron | 40.0% | |
| AGAATCTCAAAAGTAGGCTC+GGG | + | chr5.1:50839701-50839720 | None:intergenic | 40.0% | |
| GATGTTGACAAAACAGCAGT+TGG | + | chr5.1:50839356-50839375 | None:intergenic | 40.0% | |
| TAAGAAAGCTGAGGAACAGA+AGG | - | chr5.1:50839400-50839419 | MS.gene64085:CDS | 40.0% | |
| TAGTGACGCCATATCTTTGT+TGG | - | chr5.1:50838793-50838812 | MS.gene64085:CDS | 40.0% | |
| TCAGAATCAGGAAACAATCC+GGG | + | chr5.1:50838691-50838710 | None:intergenic | 40.0% | |
| TCTAACAAATCCAGCAAGAG+TGG | - | chr5.1:50839718-50839737 | MS.gene64085:intron | 40.0% | |
| TTAATGAACTTCTCCTGAGC+AGG | + | chr5.1:50839746-50839765 | None:intergenic | 40.0% | |
| TTCACTGTTGAAGTGATGGT+GGG | + | chr5.1:50839329-50839348 | None:intergenic | 40.0% | |
| TTTCACTGTTGAAGTGATGG+TGG | + | chr5.1:50839330-50839349 | None:intergenic | 40.0% | |
| TTTCTTACTAGCCCTAGCTT+TGG | + | chr5.1:50839387-50839406 | None:intergenic | 40.0% | |
| ! | AATTTTCTCCAATTGTCGCC+TGG | + | chr5.1:50838997-50839016 | None:intergenic | 40.0% |
| ! | ATTTGGAGCTGATGTAGAGT+CGG | + | chr5.1:50839450-50839469 | None:intergenic | 40.0% |
| ! | GACTTTCCTTTTCCAGCATT+TGG | + | chr5.1:50839467-50839486 | None:intergenic | 40.0% |
| ! | TTAAGAAGCACAAACCCTGA+AGG | + | chr5.1:50839809-50839828 | None:intergenic | 40.0% |
| !! | CTGATAGGAGTATCAGAATC+AGG | + | chr5.1:50838703-50838722 | None:intergenic | 40.0% |
| !! | GAGGGTACCAATTCCAAAAT+TGG | + | chr5.1:50839172-50839191 | None:intergenic | 40.0% |
| !!! | AAGCTTGGCTTTTTCACCAA+CGG | - | chr5.1:50839205-50839224 | MS.gene64085:CDS | 40.0% |
| AAGTCTTCCAGTGAGAAGGA+TGG | - | chr5.1:50839482-50839501 | MS.gene64085:CDS | 45.0% | |
| AATTGCACCCATCTTGCTCA+TGG | + | chr5.1:50839042-50839061 | None:intergenic | 45.0% | |
| AGGAAAGTCTTCCAGTGAGA+AGG | - | chr5.1:50839478-50839497 | MS.gene64085:CDS | 45.0% | |
| ATCAGCTAAGGCCAAAGCTA+GGG | - | chr5.1:50839373-50839392 | MS.gene64085:CDS | 45.0% | |
| ATTCGCATGTTGGAACCTTC+AGG | - | chr5.1:50838906-50838925 | MS.gene64085:CDS | 45.0% | |
| CAATTGTCGCCTGGAATACA+CGG | + | chr5.1:50838988-50839007 | None:intergenic | 45.0% | |
| CAGAATCAGGAAACAATCCG+GGG | + | chr5.1:50838690-50838709 | None:intergenic | 45.0% | |
| CAGAGGCTCCAACAAAGATA+TGG | + | chr5.1:50838804-50838823 | None:intergenic | 45.0% | |
| CATAGCAATGGCTATGGTCA+TGG | - | chr5.1:50838862-50838881 | MS.gene64085:CDS | 45.0% | |
| CATGTTGGAACCTTCAGGTA+AGG | - | chr5.1:50838911-50838930 | MS.gene64085:CDS | 45.0% | |
| GAAGCTAGTGATTCGCATGT+TGG | - | chr5.1:50838896-50838915 | MS.gene64085:CDS | 45.0% | |
| GACCATAGCCATTGCTATGA+GGG | + | chr5.1:50838861-50838880 | None:intergenic | 45.0% | |
| GAGGATACCATGAGCAAGAT+GGG | - | chr5.1:50839032-50839051 | MS.gene64085:intron | 45.0% | |
| GATGAAGAACTCTGCAATCC+TGG | + | chr5.1:50839914-50839933 | None:intergenic | 45.0% | |
| GATGTGTACTCGAATGGTTG+AGG | + | chr5.1:50839968-50839987 | None:intergenic | 45.0% | |
| GCAGAGTTCTTCATCAGCAA+TGG | - | chr5.1:50839919-50839938 | MS.gene64085:CDS | 45.0% | |
| GCTCTGATTTCTTCTCGGTT+GGG | + | chr5.1:50839679-50839698 | None:intergenic | 45.0% | |
| TCAACAACATCCGAAGTCAG+AGG | + | chr5.1:50838821-50838840 | None:intergenic | 45.0% | |
| TCAGCTCCAAATGCTGGAAA+AGG | - | chr5.1:50839458-50839477 | MS.gene64085:CDS | 45.0% | |
| TCTACATCAGCTCCAAATGC+TGG | - | chr5.1:50839452-50839471 | MS.gene64085:CDS | 45.0% | |
| TGACCATAGCCATTGCTATG+AGG | + | chr5.1:50838862-50838881 | None:intergenic | 45.0% | |
| TGAGGATACCATGAGCAAGA+TGG | - | chr5.1:50839031-50839050 | MS.gene64085:intron | 45.0% | |
| TTCAGACCGATTAAAGCCGT+TGG | + | chr5.1:50839224-50839243 | None:intergenic | 45.0% | |
| TTCTTCATCAGCAATGGCTG+TGG | - | chr5.1:50839925-50839944 | MS.gene64085:CDS | 45.0% | |
| TTTGTTGGAGCCTCTGACTT+CGG | - | chr5.1:50838808-50838827 | MS.gene64085:CDS | 45.0% | |
| ! | GAGCAAGATGGGTGCAATTT+TGG | - | chr5.1:50839043-50839062 | MS.gene64085:intron | 45.0% |
| ! | TAGGGCTAGTAAGAAAGCTG+AGG | - | chr5.1:50839391-50839410 | MS.gene64085:CDS | 45.0% |
| ! | TCTGAAATCCTTGATGCTGG+CGG | - | chr5.1:50839068-50839087 | MS.gene64085:intron | 45.0% |
| ! | TTTGGAGCTGATGTAGAGTC+GGG | + | chr5.1:50839449-50839468 | None:intergenic | 45.0% |
| !! | CAGTTAAGTTGGCACCTTCA+GGG | - | chr5.1:50839792-50839811 | MS.gene64085:CDS | 45.0% |
| ACAGGAAATGCCCATGGCAA+GGG | + | chr5.1:50838759-50838778 | None:intergenic | 50.0% | |
| ATCAGCAATGGCTGTGGATG+AGG | - | chr5.1:50839931-50839950 | MS.gene64085:CDS | 50.0% | |
| CATCAGCTAAGGCCAAAGCT+AGG | - | chr5.1:50839372-50839391 | MS.gene64085:CDS | 50.0% | |
| CATTTCTTCCGCCAGCATCA+AGG | + | chr5.1:50839079-50839098 | None:intergenic | 50.0% | |
| CGTGTATTCCAGGCGACAAT+TGG | - | chr5.1:50838986-50839005 | MS.gene64085:intron | 50.0% | |
| GCATCTACCACATCAACTGC+TGG | - | chr5.1:50839878-50839897 | MS.gene64085:CDS | 50.0% | |
| GCCAGCATCAAGGATTTCAG+AGG | + | chr5.1:50839069-50839088 | None:intergenic | 50.0% | |
| GTGGGAACTGTTGTAGGCTT+GGG | + | chr5.1:50839311-50839330 | None:intergenic | 50.0% | |
| GTGTACTCGAATGGTTGAGG+AGG | + | chr5.1:50839965-50839984 | None:intergenic | 50.0% | |
| TCGAATGGTTGAGGAGGTTG+AGG | + | chr5.1:50839959-50839978 | None:intergenic | 50.0% | |
| TCTACCACATCAACTGCTGG+CGG | - | chr5.1:50839881-50839900 | MS.gene64085:CDS | 50.0% | |
| TCTGACATGCCGTGTATTCC+AGG | - | chr5.1:50838976-50838995 | MS.gene64085:intron | 50.0% | |
| TGCCCTCATAGCAATGGCTA+TGG | - | chr5.1:50838856-50838875 | MS.gene64085:CDS | 50.0% | |
| TGGGAACTGTTGTAGGCTTG+GGG | + | chr5.1:50839310-50839329 | None:intergenic | 50.0% | |
| TGGTATCCTCATGCTTGTCG+AGG | + | chr5.1:50839022-50839041 | None:intergenic | 50.0% | |
| ! | CTCGGGCTCTGATTTCTTCT+CGG | + | chr5.1:50839684-50839703 | None:intergenic | 50.0% |
| ! | GCAGTTGATGTGGTAGATGC+AGG | + | chr5.1:50839878-50839897 | None:intergenic | 50.0% |
| ! | GGCTCTGATTTCTTCTCGGT+TGG | + | chr5.1:50839680-50839699 | None:intergenic | 50.0% |
| ! | TCAAGGTGCCCTCATAGCAA+TGG | - | chr5.1:50838850-50838869 | MS.gene64085:CDS | 50.0% |
| !! | CCAGTTAAGTTGGCACCTTC+AGG | - | chr5.1:50839791-50839810 | MS.gene64085:CDS | 50.0% |
| !! | CCTGAAGGTGCCAACTTAAC+TGG | + | chr5.1:50839794-50839813 | None:intergenic | 50.0% |
| !! | GCCTCTGAAATCCTTGATGC+TGG | - | chr5.1:50839065-50839084 | MS.gene64085:intron | 50.0% |
| !! | GTGATGGTGGGAACTGTTGT+AGG | + | chr5.1:50839317-50839336 | None:intergenic | 50.0% |
| ACTAAGACCTGTACCCGCAC+AGG | + | chr5.1:50838777-50838796 | None:intergenic | 55.0% | |
| AGCAAGAGTGGTTCCTGCTC+AGG | - | chr5.1:50839730-50839749 | MS.gene64085:CDS | 55.0% | |
| CACAGGAAATGCCCATGGCA+AGG | + | chr5.1:50838760-50838779 | None:intergenic | 55.0% | |
| CTACCACATCAACTGCTGGC+GGG | - | chr5.1:50839882-50839901 | MS.gene64085:CDS | 55.0% | |
| GCTGCTCCGTAACGAACATG+TGG | + | chr5.1:50838737-50838756 | None:intergenic | 55.0% | |
| GGCTTCTCCATCCTTCTCAC+TGG | + | chr5.1:50839492-50839511 | None:intergenic | 55.0% | |
| GGTGGGAACTGTTGTAGGCT+TGG | + | chr5.1:50839312-50839331 | None:intergenic | 55.0% | |
| TGAGCAGGAACCACTCTTGC+TGG | + | chr5.1:50839731-50839750 | None:intergenic | 55.0% | |
| TGCCATGGGCATTTCCTGTG+CGG | - | chr5.1:50838760-50838779 | MS.gene64085:CDS | 55.0% | |
| TTCCTACACTGCAGACTCCC+CGG | - | chr5.1:50838670-50838689 | MS.gene64085:CDS | 55.0% | |
| ! | GCAAGAACTTCAGGCTCGGT+AGG | + | chr5.1:50839842-50839861 | None:intergenic | 55.0% |
| ACCCGCACAGGAAATGCCCA+TGG | + | chr5.1:50838765-50838784 | None:intergenic | 60.0% | |
| ATCCGGGGAGTCTGCAGTGT+AGG | + | chr5.1:50838675-50838694 | None:intergenic | 60.0% | |
| GCCATGGGCATTTCCTGTGC+GGG | - | chr5.1:50838761-50838780 | MS.gene64085:CDS | 60.0% | |
| GGCATTTCCTGTGCGGGTAC+AGG | - | chr5.1:50838767-50838786 | MS.gene64085:CDS | 60.0% | |
| GGGGAGTCTGCAGTGTAGGA+AGG | + | chr5.1:50838671-50838690 | None:intergenic | 60.0% | |
| TACGGAGCAGCCCTTGCCAT+GGG | - | chr5.1:50838746-50838765 | MS.gene64085:CDS | 60.0% | |
| TTACGGAGCAGCCCTTGCCA+TGG | - | chr5.1:50838745-50838764 | MS.gene64085:CDS | 60.0% | |
| ! | ACATCAACTGCTGGCGGGTC+AGG | - | chr5.1:50839887-50839906 | MS.gene64085:CDS | 60.0% |
| ! | TGACCCGCCAGCAGTTGATG+TGG | + | chr5.1:50839888-50839907 | None:intergenic | 60.0% |
| ! | ACTGCTGGCGGGTCAGGACC+AGG | - | chr5.1:50839893-50839912 | MS.gene64085:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 50838662 | 50839991 | 50838662 | ID=MS.gene64085 |
| chr5.1 | mRNA | 50838662 | 50839991 | 50838662 | ID=MS.gene64085.t1;Parent=MS.gene64085 |
| chr5.1 | exon | 50839726 | 50839991 | 50839726 | ID=MS.gene64085.t1.exon1;Parent=MS.gene64085.t1 |
| chr5.1 | CDS | 50839726 | 50839991 | 50839726 | ID=cds.MS.gene64085.t1;Parent=MS.gene64085.t1 |
| chr5.1 | exon | 50839136 | 50839655 | 50839136 | ID=MS.gene64085.t1.exon2;Parent=MS.gene64085.t1 |
| chr5.1 | CDS | 50839136 | 50839655 | 50839136 | ID=cds.MS.gene64085.t1;Parent=MS.gene64085.t1 |
| chr5.1 | exon | 50838662 | 50838985 | 50838662 | ID=MS.gene64085.t1.exon3;Parent=MS.gene64085.t1 |
| chr5.1 | CDS | 50838662 | 50838985 | 50838662 | ID=cds.MS.gene64085.t1;Parent=MS.gene64085.t1 |
| Gene Sequence |
| Protein sequence |
