Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64215.t1 | XP_003589478.1 | 97.2 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 6.60E-239 | 836.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64215.t1 | Q6Z398 | 70.2 | 430 | 127 | 1 | 1 | 429 | 72 | 501 | 1.3e-171 | 604.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64215.t1 | G7I766 | 97.2 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 4.8e-239 | 836.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22288 | MS.gene64215 | PPI |
| MS.gene64215 | MS.gene049065 | PPI |
| MS.gene64215 | MS.gene024702 | PPI |
| MS.gene64215 | MS.gene21950 | PPI |
| MS.gene64215 | MS.gene21680 | PPI |
| MS.gene64215 | MS.gene015822 | PPI |
| MS.gene64215 | MS.gene05986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64215.t1 | MTR_1g025140 | 97.203 | 429 | 12 | 0 | 1 | 429 | 64 | 492 | 0.0 | 859 |
| MS.gene64215.t1 | MTR_1g025140 | 97.531 | 324 | 8 | 0 | 1 | 324 | 64 | 387 | 0.0 | 655 |
| MS.gene64215.t1 | MTR_8g102460 | 58.005 | 431 | 179 | 2 | 1 | 429 | 62 | 492 | 1.73e-177 | 505 |
| MS.gene64215.t1 | MTR_8g014530 | 57.541 | 431 | 180 | 3 | 1 | 429 | 62 | 491 | 3.02e-174 | 497 |
| MS.gene64215.t1 | MTR_6g088795 | 56.148 | 431 | 187 | 2 | 1 | 429 | 60 | 490 | 1.41e-167 | 480 |
| MS.gene64215.t1 | MTR_8g102460 | 57.423 | 357 | 150 | 2 | 75 | 429 | 1 | 357 | 3.42e-144 | 416 |
| MS.gene64215.t1 | MTR_5g009000 | 50.685 | 438 | 202 | 5 | 1 | 427 | 62 | 496 | 7.18e-140 | 409 |
| MS.gene64215.t1 | MTR_8g102460 | 62.245 | 294 | 110 | 1 | 1 | 293 | 62 | 355 | 6.86e-128 | 374 |
| MS.gene64215.t1 | MTR_4g097900 | 40.741 | 270 | 114 | 5 | 161 | 425 | 1 | 229 | 1.70e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64215.t1 | AT1G47840 | 63.256 | 430 | 156 | 2 | 1 | 429 | 65 | 493 | 0.0 | 543 |
| MS.gene64215.t1 | AT4G29130 | 57.143 | 434 | 184 | 2 | 1 | 432 | 62 | 495 | 1.82e-174 | 498 |
| MS.gene64215.t1 | AT2G19860 | 55.916 | 431 | 188 | 2 | 1 | 429 | 62 | 492 | 4.86e-165 | 474 |
| MS.gene64215.t1 | AT2G19860 | 55.091 | 383 | 170 | 2 | 49 | 429 | 1 | 383 | 1.81e-142 | 412 |
| MS.gene64215.t1 | AT1G50460 | 48.165 | 436 | 213 | 5 | 1 | 425 | 62 | 495 | 8.58e-135 | 397 |
| MS.gene64215.t1 | AT1G47840 | 65.306 | 294 | 100 | 2 | 1 | 293 | 65 | 357 | 1.25e-128 | 377 |
| MS.gene64215.t1 | AT3G20040 | 45.958 | 433 | 226 | 3 | 1 | 426 | 62 | 493 | 2.76e-128 | 380 |
| MS.gene64215.t1 | AT1G50460 | 48.276 | 406 | 197 | 5 | 31 | 425 | 16 | 419 | 3.51e-125 | 369 |
| MS.gene64215.t1 | AT1G50460 | 51.361 | 294 | 140 | 3 | 1 | 293 | 62 | 353 | 1.90e-95 | 291 |
| MS.gene64215.t1 | AT4G37840 | 42.130 | 432 | 230 | 8 | 1 | 424 | 63 | 482 | 3.36e-95 | 295 |
| MS.gene64215.t1 | AT1G47845 | 60.741 | 135 | 52 | 1 | 218 | 351 | 40 | 174 | 2.74e-50 | 169 |
Find 111 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACATGCCCTTGTAATT+TGG | 0.149102 | 1.3:-1161414 | None:intergenic |
| TCTCTATCAAATACAGTTAA+AGG | 0.151018 | 1.3:-1161592 | None:intergenic |
| GCTGAAGAGGAAGGTTTATT+TGG | 0.151162 | 1.3:+1161834 | MS.gene64215:CDS |
| CTGTTTGATTTCATTGCTTT+GGG | 0.156073 | 1.3:+1160833 | MS.gene64215:CDS |
| ATCTTCTTTGTCCACAAATT+TGG | 0.156563 | 1.3:-1160861 | None:intergenic |
| TGTTTCTTCTTCTGATAAAA+TGG | 0.207744 | 1.3:+1161430 | MS.gene64215:CDS |
| GCTGTTTGATTTCATTGCTT+TGG | 0.257650 | 1.3:+1160832 | MS.gene64215:CDS |
| GACTCAAAAGGTGTTATCTT+TGG | 0.284014 | 1.3:+1162584 | MS.gene64215:CDS |
| GAAACATGCCCTTGTAATTT+GGG | 0.288810 | 1.3:-1161413 | None:intergenic |
| CCAATCTCTCTCTTTCTTCC+TGG | 0.295285 | 1.3:-1160902 | None:intergenic |
| TGCTGCATGGCGCTTAGATC+CGG | 0.320311 | 1.3:-1162240 | None:intergenic |
| TCAAAAGATGGTTCTGGTAT+TGG | 0.321089 | 1.3:+1162734 | MS.gene64215:CDS |
| GCTGGGCTTTCCTCTGATGA+TGG | 0.324548 | 1.3:+1160123 | MS.gene64215:CDS |
| CTTTCCTCTGATGATGGGCC+CGG | 0.337377 | 1.3:+1160129 | MS.gene64215:CDS |
| CTGAAGAGGAAGGTTTATTT+GGG | 0.339959 | 1.3:+1161835 | MS.gene64215:CDS |
| GATTCAGTAAAGGAGCTATT+AGG | 0.376273 | 1.3:+1162677 | MS.gene64215:CDS |
| TCAATAGAAGTTTGTTTGAC+AGG | 0.385569 | 1.3:-1160941 | None:intergenic |
| GCTGCATGGCGCTTAGATCC+GGG | 0.391118 | 1.3:-1162239 | None:intergenic |
| CCAGGAAGAAAGAGAGAGAT+TGG | 0.391951 | 1.3:+1160902 | MS.gene64215:CDS |
| TGGTATTGGAGGTGCTCTAT+TGG | 0.395444 | 1.3:+1162748 | MS.gene64215:CDS |
| GAGTGGGGTGCTTTCTCAAA+TGG | 0.402916 | 1.3:+1161565 | MS.gene64215:CDS |
| TGTCTTCTCAAATGCGGGCT+GGG | 0.405946 | 1.3:+1160106 | MS.gene64215:CDS |
| CTCTATCAAATACAGTTAAA+GGG | 0.412605 | 1.3:-1161591 | None:intergenic |
| GAACATTCAAAAGATGGTTC+TGG | 0.414412 | 1.3:+1162728 | MS.gene64215:CDS |
| ATGTCTTCTCAAATGCGGGC+TGG | 0.415217 | 1.3:+1160105 | MS.gene64215:CDS |
| AACTGTATTTGATAGAGAAA+TGG | 0.419441 | 1.3:+1161597 | MS.gene64215:CDS |
| TTGTCCATGCCTTTCGTACT+CGG | 0.427134 | 1.3:+1161876 | MS.gene64215:CDS |
| AGAAGTGTTGTTGCCATTGA+TGG | 0.429881 | 1.3:+1162611 | MS.gene64215:CDS |
| GTGATAGAACATTCAAAAGA+TGG | 0.439467 | 1.3:+1162722 | MS.gene64215:CDS |
| CGTGTGTTGAGGGTACAATT+AGG | 0.452657 | 1.3:+1160426 | MS.gene64215:CDS |
| TTTCCTCTGATGATGGGCCC+GGG | 0.453044 | 1.3:+1160130 | MS.gene64215:CDS |
| ATGAAAATTATCCTCAATAC+AGG | 0.454747 | 1.3:+1162642 | MS.gene64215:CDS |
| GCCATGCAGCAAGATAATTC+TGG | 0.458132 | 1.3:+1162252 | MS.gene64215:CDS |
| GGCGGTAGCTTAGCCGGTGC+AGG | 0.461257 | 1.3:+1162530 | MS.gene64215:CDS |
| TTAGCCGGTGCAGGAATTGT+AGG | 0.462749 | 1.3:+1162539 | MS.gene64215:CDS |
| TGCTTGTTTGAACGAGGCAT+TGG | 0.466967 | 1.3:+1161132 | MS.gene64215:CDS |
| ACAATCTCAGGAATGTATCT+AGG | 0.472627 | 1.3:+1161780 | MS.gene64215:CDS |
| CTGGGCTTTCCTCTGATGAT+GGG | 0.475375 | 1.3:+1160124 | MS.gene64215:CDS |
| GAGACGAGTGCTAGTCAATA+TGG | 0.475755 | 1.3:+1161812 | MS.gene64215:CDS |
| GGAAGAGTGTGGACATAAGT+TGG | 0.478490 | 1.3:-1160165 | None:intergenic |
| CTGGCGATTTACAAGCAGTT+GGG | 0.483122 | 1.3:+1162271 | MS.gene64215:CDS |
| AGTTGGTATCATGGGAAGCC+CGG | 0.484003 | 1.3:-1160148 | None:intergenic |
| TGCAATGTCTTCTCAAATGC+GGG | 0.486500 | 1.3:+1160101 | None:intergenic |
| GATAGATTTCATTTCCCTCC+AGG | 0.488417 | 1.3:+1160884 | MS.gene64215:CDS |
| TGATGATATAGGAATGAGAA+AGG | 0.502649 | 1.3:+1160366 | MS.gene64215:intron |
| TATGTCCACACTCTTCCCTC+CGG | 0.506905 | 1.3:+1160171 | MS.gene64215:CDS |
| TGTCCATGCCTTTCGTACTC+GGG | 0.507486 | 1.3:+1161877 | MS.gene64215:CDS |
| TTTGGGGCTAGCCAAATTTG+TGG | 0.509779 | 1.3:+1160850 | MS.gene64215:CDS |
| TCCCTCCTCTATGATAAAGC+AGG | 0.511452 | 1.3:+1162294 | MS.gene64215:CDS |
| AACAAACTTCCGTGTGTTGA+GGG | 0.512683 | 1.3:+1160416 | MS.gene64215:CDS |
| GCGAAAACTTACATGGTGAC+CGG | 0.513028 | 1.3:-1161638 | None:intergenic |
| GAAGTGTTGTTGCCATTGAT+GGG | 0.523264 | 1.3:+1162612 | MS.gene64215:CDS |
| TGGACATAAGTTGGTATCAT+GGG | 0.526568 | 1.3:-1160156 | None:intergenic |
| TCTGGCGATTTACAAGCAGT+TGG | 0.527066 | 1.3:+1162270 | MS.gene64215:CDS |
| TGCAAGTAAGTCCTGTATTG+AGG | 0.528492 | 1.3:-1162653 | None:intergenic |
| TTACCCCTGCTTTATCATAG+AGG | 0.528899 | 1.3:-1162299 | None:intergenic |
| GTGGACATAAGTTGGTATCA+TGG | 0.531624 | 1.3:-1160157 | None:intergenic |
| ATCTCTCTCTTTCTTCCTGG+AGG | 0.534946 | 1.3:-1160899 | None:intergenic |
| AAACGAGGCGGTAGCTTAGC+CGG | 0.535055 | 1.3:+1162524 | MS.gene64215:CDS |
| TAGCCGGTGCAGGAATTGTA+GGG | 0.535759 | 1.3:+1162540 | MS.gene64215:CDS |
| CGAAAACTTACATGGTGACC+GGG | 0.538853 | 1.3:-1161637 | None:intergenic |
| ATGCCCTTGTAATTTGGGAA+TGG | 0.547432 | 1.3:-1161408 | None:intergenic |
| TCAGATCATTAGTACTGAGT+GGG | 0.549065 | 1.3:+1161549 | MS.gene64215:intron |
| AAAGATGGTTCTGGTATTGG+AGG | 0.549177 | 1.3:+1162737 | MS.gene64215:CDS |
| AAACAAACTTCTATTGACTC+TGG | 0.551611 | 1.3:+1160947 | MS.gene64215:CDS |
| AGTGCCATTCCCAAATTACA+AGG | 0.554150 | 1.3:+1161404 | MS.gene64215:CDS |
| GAACAAACTTCCGTGTGTTG+AGG | 0.554788 | 1.3:+1160415 | MS.gene64215:CDS |
| TGTTTGATTTCATTGCTTTG+GGG | 0.556589 | 1.3:+1160834 | MS.gene64215:CDS |
| GTTGGTATCATGGGAAGCCC+GGG | 0.557493 | 1.3:-1160147 | None:intergenic |
| AAAATTTACCCGAGTACGAA+AGG | 0.558878 | 1.3:-1161885 | None:intergenic |
| ATGTCCACACTCTTCCCTCC+GGG | 0.561316 | 1.3:+1160172 | MS.gene64215:CDS |
| TCCAGAAACAGCAAAACCCT+TGG | 0.562132 | 1.3:-1160987 | None:intergenic |
| GCCAGAATTATCTTGCTGCA+TGG | 0.563415 | 1.3:-1162253 | None:intergenic |
| GCTAGTCAATATGGCTGAAG+AGG | 0.563886 | 1.3:+1161821 | MS.gene64215:CDS |
| TCTCTCTCTTTCTTCCTGGA+GGG | 0.566588 | 1.3:-1160898 | None:intergenic |
| TTACTTGCAAGATTCAGTAA+AGG | 0.568226 | 1.3:+1162667 | MS.gene64215:CDS |
| AATCCCTACAATTCCTGCAC+CGG | 0.571549 | 1.3:-1162543 | None:intergenic |
| GATACTGTCGGAACACTAGC+CGG | 0.573684 | 1.3:+1161302 | MS.gene64215:CDS |
| GTCAATATGGCTGAAGAGGA+AGG | 0.574803 | 1.3:+1161825 | MS.gene64215:CDS |
| CCCCTGCTTTATCATAGAGG+AGG | 0.578706 | 1.3:-1162296 | None:intergenic |
| CTGCATGGCGCTTAGATCCG+GGG | 0.580837 | 1.3:-1162238 | None:intergenic |
| CCCTGCTTTATCATAGAGGA+GGG | 0.582109 | 1.3:-1162295 | None:intergenic |
| ATTGTCGTAGTATTCTGCTC+CGG | 0.591120 | 1.3:-1161321 | None:intergenic |
| ATACTACGACAATGATGCTA+AGG | 0.592137 | 1.3:+1161331 | MS.gene64215:CDS |
| CCCTCCTCTATGATAAAGCA+GGG | 0.592227 | 1.3:+1162295 | MS.gene64215:CDS |
| AAGCCCGGGCCCATCATCAG+AGG | 0.592335 | 1.3:-1160133 | None:intergenic |
| AAAATGGAAGACGACTCAAA+AGG | 0.601450 | 1.3:+1162572 | MS.gene64215:CDS |
| AGTGTTGTTGCCATTGATGG+GGG | 0.606184 | 1.3:+1162614 | MS.gene64215:CDS |
| ATGCAATGTCTTCTCAAATG+CGG | 0.607135 | 1.3:+1160100 | None:intergenic |
| GATGCTGCTAGTATCAATCC+CGG | 0.613145 | 1.3:+1161619 | MS.gene64215:CDS |
| ATACTAATCAAGTGGACCAA+GGG | 0.614805 | 1.3:+1160971 | MS.gene64215:CDS |
| ACTCTGGCATACTAATCAAG+TGG | 0.616192 | 1.3:+1160963 | MS.gene64215:CDS |
| AAGTGTTGTTGCCATTGATG+GGG | 0.622533 | 1.3:+1162613 | MS.gene64215:CDS |
| CTAATTGTACCCTCAACACA+CGG | 0.626345 | 1.3:-1160425 | None:intergenic |
| TAATAGGTTAATGATACTGT+CGG | 0.627342 | 1.3:+1161290 | MS.gene64215:intron |
| CATACTAATCAAGTGGACCA+AGG | 0.632792 | 1.3:+1160970 | MS.gene64215:CDS |
| TCTCATGTTTGCTACGTCCG+AGG | 0.634285 | 1.3:+1160506 | MS.gene64215:CDS |
| TTCAGATCATTAGTACTGAG+TGG | 0.635066 | 1.3:+1161548 | MS.gene64215:intron |
| TGTAGTTGCTTGTTTGAACG+AGG | 0.642397 | 1.3:+1161126 | MS.gene64215:CDS |
| GATGATATAGGAATGAGAAA+GGG | 0.643987 | 1.3:+1160367 | MS.gene64215:intron |
| GTAGCAAACATGAGATCATG+AGG | 0.657026 | 1.3:-1160498 | None:intergenic |
| GTGTTGAGGGTACAATTAGG+TGG | 0.658218 | 1.3:+1160429 | MS.gene64215:CDS |
| GAAATATAGACACACCCGGA+GGG | 0.661129 | 1.3:-1160186 | None:intergenic |
| AACGAGGCATTGGAAAGACA+AGG | 0.661190 | 1.3:+1161142 | MS.gene64215:CDS |
| TTACCCGAGTACGAAAGGCA+TGG | 0.671025 | 1.3:-1161880 | None:intergenic |
| GTGCCATTCCCAAATTACAA+GGG | 0.674611 | 1.3:+1161405 | MS.gene64215:CDS |
| CAGATCATTAGTACTGAGTG+GGG | 0.682773 | 1.3:+1161550 | MS.gene64215:intron |
| CACACCCGGAGGGAAGAGTG+TGG | 0.700125 | 1.3:-1160176 | None:intergenic |
| TGTGACACAATTGTAAAACG+AGG | 0.711571 | 1.3:+1162509 | MS.gene64215:CDS |
| CCTCCTCTATGATAAAGCAG+GGG | 0.712381 | 1.3:+1162296 | MS.gene64215:CDS |
| GACACAATTGTAAAACGAGG+CGG | 0.723974 | 1.3:+1162512 | MS.gene64215:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGTAAAAAAATAAT+CGG | - | chr1.3:1162075-1162094 | None:intergenic | 10.0% |
| !! | AAATATAGAATTCTAATTAA+TGG | - | chr1.3:1161054-1161073 | None:intergenic | 10.0% |
| !! | ATTAATTAGAATTCTATATT+TGG | + | chr1.3:1161053-1161072 | MS.gene64215:intron | 10.0% |
| !!! | AATTTACAAATAAATTTTAC+AGG | + | chr1.3:1162214-1162233 | MS.gene64215:intron | 10.0% |
| !! | AAAATTCAAACTCTTTATAT+AGG | + | chr1.3:1161093-1161112 | MS.gene64215:intron | 15.0% |
| !! | AAAGAAGTAAAAAAATAATC+GGG | - | chr1.3:1162074-1162093 | None:intergenic | 15.0% |
| !! | AACCATATATAAAAATATTG+TGG | - | chr1.3:1160285-1160304 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTTATCCAAAA+AGG | + | chr1.3:1160745-1160764 | MS.gene64215:intron | 15.0% |
| !! | TCTACAACAAAATAATAAAA+TGG | - | chr1.3:1160701-1160720 | None:intergenic | 15.0% |
| !! | TTATTTGAACAAAGAAATAA+AGG | - | chr1.3:1161477-1161496 | None:intergenic | 15.0% |
| !!! | AATTTGGTGAAATTAAAATT+AGG | + | chr1.3:1162010-1162029 | MS.gene64215:intron | 15.0% |
| !!! | ACAATATTTTTATATATGGT+TGG | + | chr1.3:1160284-1160303 | MS.gene64215:intron | 15.0% |
| !!! | ATCCACAATATTTTTATATA+TGG | + | chr1.3:1160280-1160299 | MS.gene64215:intron | 15.0% |
| !!! | ATTTGGTGAAATTAAAATTA+GGG | + | chr1.3:1162011-1162030 | MS.gene64215:intron | 15.0% |
| !!! | TTTTGGATAAACAATTTAAT+TGG | - | chr1.3:1160745-1160764 | None:intergenic | 15.0% |
| !! | AATAGTAAAAATCACAAACA+AGG | - | chr1.3:1160330-1160349 | None:intergenic | 20.0% |
| !! | ATTTCTTTCCTTAACTTATA+CGG | + | chr1.3:1160204-1160223 | MS.gene64215:intron | 20.0% |
| !! | CATCAGAAATAACATATTTA+GGG | - | chr1.3:1160260-1160279 | None:intergenic | 20.0% |
| !! | TAAATATACAAATGCAGTAT+TGG | + | chr1.3:1161240-1161259 | MS.gene64215:intron | 20.0% |
| !! | TCATCAGAAATAACATATTT+AGG | - | chr1.3:1160261-1160280 | None:intergenic | 20.0% |
| !! | TTCTGATTGCTAATATAATT+TGG | + | chr1.3:1161994-1162013 | MS.gene64215:intron | 20.0% |
| !!! | AAAGCTTTGATACTAATTTT+GGG | + | chr1.3:1160789-1160808 | MS.gene64215:intron | 20.0% |
| !!! | GATTAATATGATGATGATAT+AGG | + | chr1.3:1160355-1160374 | MS.gene64215:intron | 20.0% |
| !!! | TAAAGCTTTGATACTAATTT+TGG | + | chr1.3:1160788-1160807 | MS.gene64215:intron | 20.0% |
| !!! | TGTAAATTGTAAGCATATTT+TGG | - | chr1.3:1162202-1162221 | None:intergenic | 20.0% |
| ! | AACTGTATTTGATAGAGAAA+TGG | + | chr1.3:1161597-1161616 | MS.gene64215:CDS | 25.0% |
| ! | ATGAAAATTATCCTCAATAC+AGG | + | chr1.3:1162642-1162661 | MS.gene64215:CDS | 25.0% |
| ! | CTAATAATTTCCTACCTAAT+AGG | + | chr1.3:1161274-1161293 | MS.gene64215:intron | 25.0% |
| ! | CTCTATCAAATACAGTTAAA+GGG | - | chr1.3:1161594-1161613 | None:intergenic | 25.0% |
| ! | GATAAAATGGTTAGTAAAAG+TGG | + | chr1.3:1161443-1161462 | MS.gene64215:intron | 25.0% |
| ! | GTCTTAAATATTTATGAGAC+TGG | + | chr1.3:1160567-1160586 | MS.gene64215:intron | 25.0% |
| ! | TAATAGGTTAATGATACTGT+CGG | + | chr1.3:1161290-1161309 | MS.gene64215:intron | 25.0% |
| ! | TCTCTATCAAATACAGTTAA+AGG | - | chr1.3:1161595-1161614 | None:intergenic | 25.0% |
| ! | TGTTTCTTCTTCTGATAAAA+TGG | + | chr1.3:1161430-1161449 | MS.gene64215:CDS | 25.0% |
| ! | TTCAAACTCTTTATATAGGT+AGG | + | chr1.3:1161097-1161116 | MS.gene64215:intron | 25.0% |
| !! | CATTTTAAACTTAGTGATTG+AGG | - | chr1.3:1162414-1162433 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTTCACTTAGAT+TGG | - | chr1.3:1162477-1162496 | None:intergenic | 25.0% |
| !!! | AAATGCAGTATTGGTATAAA+TGG | + | chr1.3:1161249-1161268 | MS.gene64215:intron | 25.0% |
| !!! | ACTCACTTGTTTTCTATATA+AGG | - | chr1.3:1161706-1161725 | None:intergenic | 25.0% |
| !!! | CTCACTTGTTTTCTATATAA+GGG | - | chr1.3:1161705-1161724 | None:intergenic | 25.0% |
| ACTTCTGTATATGATTTGAG+CGG | - | chr1.3:1161937-1161956 | None:intergenic | 30.0% | |
| AGATACACTTTGTGTTTGTA+AGG | + | chr1.3:1162133-1162152 | MS.gene64215:intron | 30.0% | |
| ATCTTCTTTGTCCACAAATT+TGG | - | chr1.3:1160864-1160883 | None:intergenic | 30.0% | |
| CAACAAAATTACGACATAGA+TGG | - | chr1.3:1161665-1161684 | None:intergenic | 30.0% | |
| CAATCAAAACAAACTAACCT+CGG | - | chr1.3:1160526-1160545 | None:intergenic | 30.0% | |
| CTCAAATCATATACAGAAGT+AGG | + | chr1.3:1161937-1161956 | MS.gene64215:intron | 30.0% | |
| GACAGTATCATTAACCTATT+AGG | - | chr1.3:1161291-1161310 | None:intergenic | 30.0% | |
| GATGATATAGGAATGAGAAA+GGG | + | chr1.3:1160367-1160386 | MS.gene64215:intron | 30.0% | |
| GTATCATTAACCTATTAGGT+AGG | - | chr1.3:1161287-1161306 | None:intergenic | 30.0% | |
| GTGATAGAACATTCAAAAGA+TGG | + | chr1.3:1162722-1162741 | MS.gene64215:CDS | 30.0% | |
| TGATGATATAGGAATGAGAA+AGG | + | chr1.3:1160366-1160385 | MS.gene64215:intron | 30.0% | |
| TTAACATGCAAAGTAAGCTT+TGG | - | chr1.3:1160771-1160790 | None:intergenic | 30.0% | |
| TTACTTGCAAGATTCAGTAA+AGG | + | chr1.3:1162667-1162686 | MS.gene64215:CDS | 30.0% | |
| ! | AAATAAATTTTACAGGACCC+CGG | + | chr1.3:1162221-1162240 | MS.gene64215:intron | 30.0% |
| ! | CTGTTTGATTTCATTGCTTT+GGG | + | chr1.3:1160833-1160852 | MS.gene64215:CDS | 30.0% |
| ! | TCAATAGAAGTTTGTTTGAC+AGG | - | chr1.3:1160944-1160963 | None:intergenic | 30.0% |
| ! | TGAAAGAAAAACAGTTCTAG+AGG | + | chr1.3:1162484-1162503 | MS.gene64215:CDS | 30.0% |
| ! | TGTTTGATTTCATTGCTTTG+GGG | + | chr1.3:1160834-1160853 | MS.gene64215:CDS | 30.0% |
| !! | AAACAAACTTCTATTGACTC+TGG | + | chr1.3:1160947-1160966 | MS.gene64215:CDS | 30.0% |
| !! | AGGTTGATATGTACTTTCTT+GGG | - | chr1.3:1162394-1162413 | None:intergenic | 30.0% |
| !! | ATTTTTGAGAAGACAATCTC+AGG | + | chr1.3:1161768-1161787 | MS.gene64215:CDS | 30.0% |
| !! | GTTGTTTTCATAAGTTCTCT+CGG | - | chr1.3:1160593-1160612 | None:intergenic | 30.0% |
| !! | TTGTTTTATGCATTGGATCT+TGG | + | chr1.3:1160390-1160409 | MS.gene64215:CDS | 30.0% |
| AAAATGGAAGACGACTCAAA+AGG | + | chr1.3:1162572-1162591 | MS.gene64215:CDS | 35.0% | |
| AAAATTTACCCGAGTACGAA+AGG | - | chr1.3:1161888-1161907 | None:intergenic | 35.0% | |
| ACAATCTCAGGAATGTATCT+AGG | + | chr1.3:1161780-1161799 | MS.gene64215:CDS | 35.0% | |
| AGAAACATGCCCTTGTAATT+TGG | - | chr1.3:1161417-1161436 | None:intergenic | 35.0% | |
| ATACTAATCAAGTGGACCAA+GGG | + | chr1.3:1160971-1160990 | MS.gene64215:CDS | 35.0% | |
| ATACTACGACAATGATGCTA+AGG | + | chr1.3:1161331-1161350 | MS.gene64215:CDS | 35.0% | |
| CGAGTTTCTGTAATCTATCT+TGG | - | chr1.3:1160662-1160681 | None:intergenic | 35.0% | |
| CTGAAGAGGAAGGTTTATTT+GGG | + | chr1.3:1161835-1161854 | MS.gene64215:CDS | 35.0% | |
| GAAACATGCCCTTGTAATTT+GGG | - | chr1.3:1161416-1161435 | None:intergenic | 35.0% | |
| GAAAGAAATATAGACACACC+CGG | - | chr1.3:1160193-1160212 | None:intergenic | 35.0% | |
| GAACATTCAAAAGATGGTTC+TGG | + | chr1.3:1162728-1162747 | MS.gene64215:CDS | 35.0% | |
| GATTCAGTAAAGGAGCTATT+AGG | + | chr1.3:1162677-1162696 | MS.gene64215:CDS | 35.0% | |
| GCAGGTAATGTAAAACACTA+AGG | - | chr1.3:1162372-1162391 | None:intergenic | 35.0% | |
| TAACTCGTCCGTATAAGTTA+AGG | - | chr1.3:1160215-1160234 | None:intergenic | 35.0% | |
| TAGATTGGATTCAACCTGAA+GGG | - | chr1.3:1162462-1162481 | None:intergenic | 35.0% | |
| TGGGATGATATAATATACGC+AGG | + | chr1.3:1160808-1160827 | MS.gene64215:intron | 35.0% | |
| TGTAGGGATTCTGCAAAAAA+TGG | + | chr1.3:1162556-1162575 | MS.gene64215:CDS | 35.0% | |
| TGTGACACAATTGTAAAACG+AGG | + | chr1.3:1162509-1162528 | MS.gene64215:CDS | 35.0% | |
| TTAGATTGGATTCAACCTGA+AGG | - | chr1.3:1162463-1162482 | None:intergenic | 35.0% | |
| ! | AAGGCATGGACAATTTTTGA+GGG | - | chr1.3:1161869-1161888 | None:intergenic | 35.0% |
| ! | GCTGTTTGATTTCATTGCTT+TGG | + | chr1.3:1160832-1160851 | MS.gene64215:CDS | 35.0% |
| ! | TCAGATCATTAGTACTGAGT+GGG | + | chr1.3:1161549-1161568 | MS.gene64215:intron | 35.0% |
| ! | TTCAGATCATTAGTACTGAG+TGG | + | chr1.3:1161548-1161567 | MS.gene64215:intron | 35.0% |
| ! | TTTTATGCATTGGATCTTGG+AGG | + | chr1.3:1160393-1160412 | MS.gene64215:CDS | 35.0% |
| !! | AAAGGCATGGACAATTTTTG+AGG | - | chr1.3:1161870-1161889 | None:intergenic | 35.0% |
| !! | AAAGTAAGCTTTGGCCTTTT+TGG | - | chr1.3:1160762-1160781 | None:intergenic | 35.0% |
| !! | GAAAGGGTTGTTTTATGCAT+TGG | + | chr1.3:1160383-1160402 | MS.gene64215:CDS | 35.0% |
| !! | GACTCAAAAGGTGTTATCTT+TGG | + | chr1.3:1162584-1162603 | MS.gene64215:CDS | 35.0% |
| !! | GAGGTTGATATGTACTTTCT+TGG | - | chr1.3:1162395-1162414 | None:intergenic | 35.0% |
| !! | TCAAAAGATGGTTCTGGTAT+TGG | + | chr1.3:1162734-1162753 | MS.gene64215:CDS | 35.0% |
| !! | TGGACATAAGTTGGTATCAT+GGG | - | chr1.3:1160159-1160178 | None:intergenic | 35.0% |
| !!! | GCTAAGGTTGCTGTTATTTT+AGG | + | chr1.3:1161347-1161366 | MS.gene64215:CDS | 35.0% |
| !!! | GTTGCTGTTATTTTAGGAAC+TGG | + | chr1.3:1161353-1161372 | MS.gene64215:CDS | 35.0% |
| AACAAACTTCCGTGTGTTGA+GGG | + | chr1.3:1160416-1160435 | MS.gene64215:CDS | 40.0% | |
| ACTCTGGCATACTAATCAAG+TGG | + | chr1.3:1160963-1160982 | MS.gene64215:CDS | 40.0% | |
| AGATGGTGCGAAAACTTACA+TGG | - | chr1.3:1161648-1161667 | None:intergenic | 40.0% | |
| ATGCCCTTGTAATTTGGGAA+TGG | - | chr1.3:1161411-1161430 | None:intergenic | 40.0% | |
| ATTGTCGTAGTATTCTGCTC+CGG | - | chr1.3:1161324-1161343 | None:intergenic | 40.0% | |
| CATACTAATCAAGTGGACCA+AGG | + | chr1.3:1160970-1160989 | MS.gene64215:CDS | 40.0% | |
| CTAATTGTACCCTCAACACA+CGG | - | chr1.3:1160428-1160447 | None:intergenic | 40.0% | |
| GACACAATTGTAAAACGAGG+CGG | + | chr1.3:1162512-1162531 | MS.gene64215:CDS | 40.0% | |
| GATAGATTTCATTTCCCTCC+AGG | + | chr1.3:1160884-1160903 | MS.gene64215:CDS | 40.0% | |
| GCTGAAGAGGAAGGTTTATT+TGG | + | chr1.3:1161834-1161853 | MS.gene64215:CDS | 40.0% | |
| GTAGCAAACATGAGATCATG+AGG | - | chr1.3:1160501-1160520 | None:intergenic | 40.0% | |
| TGATATGTACTTTCTTGGGC+AGG | - | chr1.3:1162390-1162409 | None:intergenic | 40.0% | |
| TGCAAGTAAGTCCTGTATTG+AGG | - | chr1.3:1162656-1162675 | None:intergenic | 40.0% | |
| TGTAGTTGCTTGTTTGAACG+AGG | + | chr1.3:1161126-1161145 | MS.gene64215:CDS | 40.0% | |
| TTACCCCTGCTTTATCATAG+AGG | - | chr1.3:1162302-1162321 | None:intergenic | 40.0% | |
| TTCATACAAACCCCCATCAA+TGG | - | chr1.3:1162627-1162646 | None:intergenic | 40.0% | |
| ! | AAGTGTTGTTGCCATTGATG+GGG | + | chr1.3:1162613-1162632 | MS.gene64215:CDS | 40.0% |
| ! | AGTGCCATTCCCAAATTACA+AGG | + | chr1.3:1161404-1161423 | MS.gene64215:CDS | 40.0% |
| ! | CAGATCATTAGTACTGAGTG+GGG | + | chr1.3:1161550-1161569 | MS.gene64215:intron | 40.0% |
| ! | GTGCCATTCCCAAATTACAA+GGG | + | chr1.3:1161405-1161424 | MS.gene64215:CDS | 40.0% |
| !! | AAAGATGGTTCTGGTATTGG+AGG | + | chr1.3:1162737-1162756 | MS.gene64215:CDS | 40.0% |
| !! | AGAAGTGTTGTTGCCATTGA+TGG | + | chr1.3:1162611-1162630 | MS.gene64215:CDS | 40.0% |
| !! | GAAGTGTTGTTGCCATTGAT+GGG | + | chr1.3:1162612-1162631 | MS.gene64215:CDS | 40.0% |
| !! | GTGGACATAAGTTGGTATCA+TGG | - | chr1.3:1160160-1160179 | None:intergenic | 40.0% |
| AAGGGAACAAGTGAGTGTCA+AGG | - | chr1.3:1162444-1162463 | None:intergenic | 45.0% | |
| AATCCCTACAATTCCTGCAC+CGG | - | chr1.3:1162546-1162565 | None:intergenic | 45.0% | |
| AGAAATATAGACACACCCGG+AGG | - | chr1.3:1160190-1160209 | None:intergenic | 45.0% | |
| ATCTCTCTCTTTCTTCCTGG+AGG | - | chr1.3:1160902-1160921 | None:intergenic | 45.0% | |
| CCAATCTCTCTCTTTCTTCC+TGG | - | chr1.3:1160905-1160924 | None:intergenic | 45.0% | |
| CCAGGAAGAAAGAGAGAGAT+TGG | + | chr1.3:1160902-1160921 | MS.gene64215:CDS | 45.0% | |
| CCCTCCTCTATGATAAAGCA+GGG | + | chr1.3:1162295-1162314 | MS.gene64215:CDS | 45.0% | |
| CCCTGCTTTATCATAGAGGA+GGG | - | chr1.3:1162298-1162317 | None:intergenic | 45.0% | |
| CCTCCTCTATGATAAAGCAG+GGG | + | chr1.3:1162296-1162315 | MS.gene64215:CDS | 45.0% | |
| CGAAAACTTACATGGTGACC+GGG | - | chr1.3:1161640-1161659 | None:intergenic | 45.0% | |
| CTGGCGATTTACAAGCAGTT+GGG | + | chr1.3:1162271-1162290 | MS.gene64215:CDS | 45.0% | |
| GAAATATAGACACACCCGGA+GGG | - | chr1.3:1160189-1160208 | None:intergenic | 45.0% | |
| GAACAAACTTCCGTGTGTTG+AGG | + | chr1.3:1160415-1160434 | MS.gene64215:CDS | 45.0% | |
| GAGACGAGTGCTAGTCAATA+TGG | + | chr1.3:1161812-1161831 | MS.gene64215:CDS | 45.0% | |
| GATGCTGCTAGTATCAATCC+CGG | + | chr1.3:1161619-1161638 | MS.gene64215:CDS | 45.0% | |
| GCCAGAATTATCTTGCTGCA+TGG | - | chr1.3:1162256-1162275 | None:intergenic | 45.0% | |
| GCCATGCAGCAAGATAATTC+TGG | + | chr1.3:1162252-1162271 | MS.gene64215:CDS | 45.0% | |
| GCGAAAACTTACATGGTGAC+CGG | - | chr1.3:1161641-1161660 | None:intergenic | 45.0% | |
| GCTAGTCAATATGGCTGAAG+AGG | + | chr1.3:1161821-1161840 | MS.gene64215:CDS | 45.0% | |
| GGACGAGTTAAGCTTATTCG+AGG | + | chr1.3:1160225-1160244 | MS.gene64215:intron | 45.0% | |
| GTCAATATGGCTGAAGAGGA+AGG | + | chr1.3:1161825-1161844 | MS.gene64215:CDS | 45.0% | |
| TCCAGAAACAGCAAAACCCT+TGG | - | chr1.3:1160990-1161009 | None:intergenic | 45.0% | |
| TCCCTCCTCTATGATAAAGC+AGG | + | chr1.3:1162294-1162313 | MS.gene64215:CDS | 45.0% | |
| TCTCTCTCTTTCTTCCTGGA+GGG | - | chr1.3:1160901-1160920 | None:intergenic | 45.0% | |
| TCTGGCGATTTACAAGCAGT+TGG | + | chr1.3:1162270-1162289 | MS.gene64215:CDS | 45.0% | |
| TGCTTGTTTGAACGAGGCAT+TGG | + | chr1.3:1161132-1161151 | MS.gene64215:CDS | 45.0% | |
| TTGTCCATGCCTTTCGTACT+CGG | + | chr1.3:1161876-1161895 | MS.gene64215:CDS | 45.0% | |
| ! | AGTGTTGTTGCCATTGATGG+GGG | + | chr1.3:1162614-1162633 | MS.gene64215:CDS | 45.0% |
| ! | CGTGTGTTGAGGGTACAATT+AGG | + | chr1.3:1160426-1160445 | MS.gene64215:CDS | 45.0% |
| ! | GGAAGAGTGTGGACATAAGT+TGG | - | chr1.3:1160168-1160187 | None:intergenic | 45.0% |
| ! | GTGTTGAGGGTACAATTAGG+TGG | + | chr1.3:1160429-1160448 | MS.gene64215:CDS | 45.0% |
| !! | AACGAGGCATTGGAAAGACA+AGG | + | chr1.3:1161142-1161161 | MS.gene64215:CDS | 45.0% |
| !! | TGGTATTGGAGGTGCTCTAT+TGG | + | chr1.3:1162748-1162767 | MS.gene64215:CDS | 45.0% |
| !! | TTTGGGGCTAGCCAAATTTG+TGG | + | chr1.3:1160850-1160869 | MS.gene64215:CDS | 45.0% |
| !!! | ACCAAGGGTTTTGCTGTTTC+TGG | + | chr1.3:1160986-1161005 | MS.gene64215:CDS | 45.0% |
| ATGTCTTCTCAAATGCGGGC+TGG | + | chr1.3:1160105-1160124 | MS.gene64215:CDS | 50.0% | |
| CCCCTGCTTTATCATAGAGG+AGG | - | chr1.3:1162299-1162318 | None:intergenic | 50.0% | |
| CTGGGCTTTCCTCTGATGAT+GGG | + | chr1.3:1160124-1160143 | MS.gene64215:CDS | 50.0% | |
| GACACTCACTTGTTCCCTTC+AGG | + | chr1.3:1162445-1162464 | MS.gene64215:intron | 50.0% | |
| GATACTGTCGGAACACTAGC+CGG | + | chr1.3:1161302-1161321 | MS.gene64215:CDS | 50.0% | |
| TAGCCGGTGCAGGAATTGTA+GGG | + | chr1.3:1162540-1162559 | MS.gene64215:CDS | 50.0% | |
| TATGTCCACACTCTTCCCTC+CGG | + | chr1.3:1160171-1160190 | MS.gene64215:CDS | 50.0% | |
| TGTCCATGCCTTTCGTACTC+GGG | + | chr1.3:1161877-1161896 | MS.gene64215:CDS | 50.0% | |
| TGTCTTCTCAAATGCGGGCT+GGG | + | chr1.3:1160106-1160125 | MS.gene64215:CDS | 50.0% | |
| TTACCCGAGTACGAAAGGCA+TGG | - | chr1.3:1161883-1161902 | None:intergenic | 50.0% | |
| TTAGCCGGTGCAGGAATTGT+AGG | + | chr1.3:1162539-1162558 | MS.gene64215:CDS | 50.0% | |
| ! | AGTTGGTATCATGGGAAGCC+CGG | - | chr1.3:1160151-1160170 | None:intergenic | 50.0% |
| ! | GAGTGGGGTGCTTTCTCAAA+TGG | + | chr1.3:1161565-1161584 | MS.gene64215:CDS | 50.0% |
| ! | TCTCATGTTTGCTACGTCCG+AGG | + | chr1.3:1160506-1160525 | MS.gene64215:CDS | 50.0% |
| AAACGAGGCGGTAGCTTAGC+CGG | + | chr1.3:1162524-1162543 | MS.gene64215:CDS | 55.0% | |
| ATGTCCACACTCTTCCCTCC+GGG | + | chr1.3:1160172-1160191 | MS.gene64215:CDS | 55.0% | |
| GCTGGGCTTTCCTCTGATGA+TGG | + | chr1.3:1160123-1160142 | MS.gene64215:CDS | 55.0% | |
| GTTGGTATCATGGGAAGCCC+GGG | - | chr1.3:1160150-1160169 | None:intergenic | 55.0% | |
| TGCTGCATGGCGCTTAGATC+CGG | - | chr1.3:1162243-1162262 | None:intergenic | 55.0% | |
| !! | CTTTCCTCTGATGATGGGCC+CGG | + | chr1.3:1160129-1160148 | MS.gene64215:CDS | 55.0% |
| !! | TTTCCTCTGATGATGGGCCC+GGG | + | chr1.3:1160130-1160149 | MS.gene64215:CDS | 55.0% |
| CTGCATGGCGCTTAGATCCG+GGG | - | chr1.3:1162241-1162260 | None:intergenic | 60.0% | |
| GCTGCATGGCGCTTAGATCC+GGG | - | chr1.3:1162242-1162261 | None:intergenic | 60.0% | |
| AAGCCCGGGCCCATCATCAG+AGG | - | chr1.3:1160136-1160155 | None:intergenic | 65.0% | |
| CACACCCGGAGGGAAGAGTG+TGG | - | chr1.3:1160179-1160198 | None:intergenic | 65.0% | |
| GGCGGTAGCTTAGCCGGTGC+AGG | + | chr1.3:1162530-1162549 | MS.gene64215:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1160105 | 1162802 | 1160105 | ID=MS.gene64215 |
| chr1.3 | mRNA | 1160105 | 1162802 | 1160105 | ID=MS.gene64215.t1;Parent=MS.gene64215 |
| chr1.3 | exon | 1160105 | 1160193 | 1160105 | ID=MS.gene64215.t1.exon1;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1160105 | 1160193 | 1160105 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1160377 | 1160527 | 1160377 | ID=MS.gene64215.t1.exon2;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1160377 | 1160527 | 1160377 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1160830 | 1161012 | 1160830 | ID=MS.gene64215.t1.exon3;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1160830 | 1161012 | 1160830 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1161115 | 1161189 | 1161115 | ID=MS.gene64215.t1.exon4;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1161115 | 1161189 | 1161115 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1161296 | 1161451 | 1161296 | ID=MS.gene64215.t1.exon5;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1161296 | 1161451 | 1161296 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1161553 | 1161648 | 1161553 | ID=MS.gene64215.t1.exon6;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1161553 | 1161648 | 1161553 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1161768 | 1161898 | 1161768 | ID=MS.gene64215.t1.exon7;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1161768 | 1161898 | 1161768 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1162236 | 1162317 | 1162236 | ID=MS.gene64215.t1.exon8;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1162236 | 1162317 | 1162236 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| chr1.3 | exon | 1162467 | 1162802 | 1162467 | ID=MS.gene64215.t1.exon9;Parent=MS.gene64215.t1 |
| chr1.3 | CDS | 1162467 | 1162802 | 1162467 | ID=cds.MS.gene64215.t1;Parent=MS.gene64215.t1 |
| Gene Sequence |
| Protein sequence |
