AlfalfaGEDB | MS.gene64767

M. sativa cultivar XinJiangDaYe / MS.gene64767

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13637.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64767.t1	XP_003612170.2	87	431	50	3	1	427	11	439	1.20E-136	496.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64767.t1	Q05753	44.1	279	143	4	13	280	7	283	1.4e-56	221.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64767.t1	G7JW80	87.0	431	50	3	1	427	1	429	8.9e-137	496.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene64767	0.804671	1.93E-49	-1.69E-46
MS.gene051471	MS.gene64767	0.811239	7.73E-51	-1.69E-46
MS.gene052078	MS.gene64767	0.843531	1.32E-58	-1.69E-46
MS.gene052322	MS.gene64767	0.804785	1.83E-49	-1.69E-46
MS.gene053928	MS.gene64767	0.815496	8.97E-52	-1.69E-46
MS.gene055277	MS.gene64767	0.812189	4.80E-51	-1.69E-46
MS.gene055422	MS.gene64767	0.82407	9.85E-54	-1.69E-46
MS.gene057439	MS.gene64767	0.809534	1.80E-50	-1.69E-46
MS.gene058993	MS.gene64767	0.825556	4.40E-54	-1.69E-46
MS.gene059518	MS.gene64767	0.803049	4.20E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64767.t1	MTR_5g022050	93.271	431	23	3	1	427	1	429	0.0	774
MS.gene64767.t1	MTR_5g023090	76.096	456	66	7	1	416	1	453	0.0	639
MS.gene64767.t1	MTR_5g022050	93.296	358	18	3	1	354	11	366	0.0	632
MS.gene64767.t1	MTR_2g048680	46.154	182	97	1	233	413	123	304	3.01e-52	177
MS.gene64767.t1	MTR_2g048680	47.853	163	85	0	251	413	62	224	8.75e-50	169
MS.gene64767.t1	MTR_5g043640	32.353	136	92	0	258	393	91	226	2.10e-16	79.0
MS.gene64767.t1	MTR_5g043640	31.618	136	90	1	261	393	58	193	8.31e-15	74.3
MS.gene64767.t1	MTR_5g026800	30.657	137	94	1	261	396	15	151	5.20e-14	72.4
MS.gene64767.t1	MTR_4g092760	29.240	171	113	3	233	402	40	203	3.09e-12	68.6
MS.gene64767.t1	MTR_5g077770	35.714	154	93	2	260	413	591	738	6.84e-12	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64767.t1	AT5G66055	52.969	421	184	5	13	421	7	425	2.63e-150	434
MS.gene64767.t1	AT5G66055	49.859	355	165	4	13	356	7	359	9.93e-114	338
MS.gene64767.t1	AT5G40160	47.253	182	95	1	233	413	127	308	1.61e-52	179
MS.gene64767.t1	AT5G40160	46.795	156	82	1	233	387	127	282	2.02e-43	154
MS.gene64767.t1	AT2G25600	32.192	146	96	2	261	405	581	724	1.37e-12	70.5
MS.gene64767.t1	AT4G27780	39.241	79	48	0	318	396	261	339	2.06e-12	68.6
MS.gene64767.t1	AT2G03430	29.710	138	97	0	256	393	82	219	4.71e-12	66.2
MS.gene64767.t1	AT2G14255	31.333	150	100	2	249	395	83	232	1.00e-11	67.0
MS.gene64767.t1	AT5G53470	31.683	101	67	1	298	396	224	324	2.36e-11	65.1
MS.gene64767.t1	AT4G19150	25.466	161	115	2	261	420	20	176	2.72e-11	63.9

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Find 85 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTACCAAGAACCAA+AGG	0.660134	5.2:-13219716	None:intergenic
AAAGAGGGTTGATTCCTTTG+AGG	0.450936	5.2:+13219636	MS.gene64767:CDS
AAAGTTATGAAGAAGAAAAG+AGG	0.482187	5.2:+13219620	MS.gene64767:CDS
AACTACGAAGAACACATCAT+CGG	0.651971	5.2:+13219371	MS.gene64767:CDS
AAGAAGAGTGTGTGGGGTTG+AGG	0.315484	5.2:-13219239	None:intergenic
AAGAGGGTTGATTCCTTTGA+GGG	0.442733	5.2:+13219637	MS.gene64767:CDS
AAGGTGGGTTGAGTGATGAG+AGG	0.562680	5.2:+13219768	MS.gene64767:CDS
AAGTTATGAAGAAGAAAAGA+GGG	0.517219	5.2:+13219621	MS.gene64767:CDS
AATCCTAGATGGGCTGTTTA+TGG	0.219355	5.2:+13219803	MS.gene64767:CDS
AATTACCGCTTTGTAAAGAG+CGG	0.611856	5.2:-13221504	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTCGCGGATAAAAA+AGG	-	chr5.2:13222542-13222561	None:intergenic	30.0%
AAAAACTCGCGGATAAAAAA+GGG	-	chr5.2:13222541-13222560	None:intergenic	30.0%
AAAGAAGAAAAAGAAGACAG+TGG	+	chr5.2:13219490-13219509	MS.gene64767:CDS	30.0%
AAATTCATTTGCTCTGTCTT+AGG	+	chr5.2:13222261-13222280	MS.gene64767:intron	30.0%
AAGCAAATGCATAGAATATC+AGG	-	chr5.2:13222050-13222069	None:intergenic	30.0%
AGAATCTTGTTCCTGATAAA+TGG	+	chr5.2:13219522-13219541	MS.gene64767:CDS	30.0%
ATCCAAAATGGCTCTTAAAT+TGG	+	chr5.2:13220719-13220738	MS.gene64767:intron	30.0%
CAATGTGGATATAAATCTTC+AGG	+	chr5.2:13222164-13222183	MS.gene64767:CDS	30.0%
CTTAAGAACCAGTTAATGAA+AGG	+	chr5.2:13222944-13222963	MS.gene64767:intron	30.0%
GAAATTCGATTGTGATGAAA+TGG	+	chr5.2:13220789-13220808	MS.gene64767:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	13219209	13223631	13219209	ID=MS.gene64767
chr5.2	mRNA	13219209	13223631	13219209	ID=MS.gene64767.t1;Parent=MS.gene64767
chr5.2	exon	13219209	13219896	13219209	ID=MS.gene64767.t1.exon1;Parent=MS.gene64767.t1
chr5.2	CDS	13219209	13219896	13219209	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13220942	13221018	13220942	ID=MS.gene64767.t1.exon2;Parent=MS.gene64767.t1
chr5.2	CDS	13220942	13221018	13220942	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13221309	13221407	13221309	ID=MS.gene64767.t1.exon3;Parent=MS.gene64767.t1
chr5.2	CDS	13221309	13221407	13221309	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13221494	13221592	13221494	ID=MS.gene64767.t1.exon4;Parent=MS.gene64767.t1
chr5.2	CDS	13221494	13221592	13221494	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13222093	13222191	13222093	ID=MS.gene64767.t1.exon5;Parent=MS.gene64767.t1
chr5.2	CDS	13222093	13222191	13222093	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13222283	13222381	13222283	ID=MS.gene64767.t1.exon6;Parent=MS.gene64767.t1
chr5.2	CDS	13222283	13222381	13222283	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1
chr5.2	exon	13223509	13223631	13223509	ID=MS.gene64767.t1.exon7;Parent=MS.gene64767.t1
chr5.2	CDS	13223509	13223631	13223509	ID=cds.MS.gene64767.t1;Parent=MS.gene64767.t1

Gene Sequence

>MS.gene64767

ATGTTCAATTTTTCCACACTTGTTCATAATCCTCAACCCCACACACTCTTCTTCTCTCCATTCCCTTCTTCTTCTTCCACACCTCGCAAGTTTCAATCTTTTCAATCTCTCACAAACCGCAACCTCCACAAAATTCTCTCTTCATCACACCAACATGACAACAACTACGAAGAACACATCATCGGAGACTGTCTTGTCTTCGAGGAAGGCATTTTCGAAGACCCCATTTTTCCAACTTCCGACAACAACCTCGTAAACAACAAAAAACCAAAACCAATTTCAAAGAAGAAAAAGAAGACAGTGGTAAAGTCCGAGAATCTTGTTCCTGATAAATGGAAAGAAGTTCAAGCAGAGATAAACATAACGAAGAAAGAACGGCGTAAGATAGCTCAAGAGATTGAGTTTAATAGTAAAGTTATGAAGAAGAAAAGAGGGTTGATTCCTTTGAGGGATATGGATTTGAATGAGTATAAGGCTTATAAAGAAGCTAAATTGGCTCAGTTGAAGCCTTTGGTTCTTGGTAAGGTTTTTGCTGAGAAAGAGGATGATGAAGAAGAAGAAGGTGGGTTGAGTGATGAGAGGGTAGTGCCTAGGAATCCTAGATGGGCTGTTTATGGGAGAGGTTTCGAGGATGTTAATGAGTTTTTGAATAGTGAGAGTTATGACTCTGCTGCTATGAAAACTGGAGGTAATTGGTATTTACAATCTGTTTTGATTTTATTTTTGTTAATTCTGTTGAGGATTATTATGACCTATGTAACAACTTTTAGTTTTAGATTGAACGTGTCAGGTGCGCTTGACACGTAATGGTGTTAGACACAAACACATGTAGTTACGTTTGGTATCTACGTGTCAGTGTCGTATATGGTACATGTGTCTGTGTTGTAATTGCCGCTTCATAGATTATTGTGTCAGGTGTATGAAATGTATTGGTGTCAGGGTGTATGAAATGTATTGGTGTCAGACACATACATGTAGTTACCTTTGGTATCTACGTGTCATTGTCACATCTGGCATATGTATTTGTAATGCTCTTCATAGATTATTGTTTAGGGTGCCGTTCTGGTGGCTGACACGTATTTGTGTCAGACACAAGCACATGTAGTTGTGTTTGGTTTCTATGTGTCAGTGTCATATCCGGTATGTGTCTGTGTTGCTGCTTCGTAGATTATAATTTATGCTTGTTAGATAACTTTTGGTTCTTTGCAACATGCTCTGATGTAGTGAAAATCAACTTCCTTGGTGATGATGTATGGACATTTTGAAAAATAAGTGTGGTTTGGATTTGCTTTTGATTTATGGGAGCTTGTTGGTTAAAACAAATTTATGGTGAAAAATGCTTATAAGTTTACAAGTGTTTATTGAAAAGTTAAATGACAGAGCTTATGAAAAAGTTGAGATATAAAGGCTAGTTTTAATTTATATGAGAAGCTATTGTATTGAAAACTCATAGTTATTGTGAGATTTAGTTTTAGTATTTCTCTTCAGATAAGTGTTTTTGGAGAAGTTTATCCAAAATGGCTCTTAAATTGGTGCTACTTCACAACCTTTGGTACCTAATGGATGGCAATATAAACAAAGAAATTCGATTGTGATGAAATGGATCATTTTATTCATTGATGGTTAAATCCGGGAAGATATTCATTTTATGCACTGCTGCTTCTCATTGTTTGCAATATATGGTTTTTAACTTTTGCGATTTTCATTTCATTCTTTCATGCTTTTGTGTATAGGTCGTCCTAGGTTGTTTACCAGGGAGGAGAGGGATTTGTTGAGTAAGAAAAAGCCAGACTTGTCAGTTGCTACTTCAGTAAGTATTCCATGTCTGGTGAACAATCACTGATATTTCATCATCATCATCCTCATTATATTTTGTACTGTTACTGGAAAATAATAACTCTCTAGTTTTCCTTTGTTTTGATGTTGAAGTAATTTTTTGTTCCATCGTTGATGTTGCGGAGTAATCTTAGTAGTTGTTGCATTTTTTTCAATGTTGGAATCATAATAGAAGTGTAGGGGAAAAGGTATTCACTTGTTTGTTACCTTCGATAAGTAATCTCTATATTTATGTTTTCAACGGCTAATACTCATTAATTGTAGGATAAATGGCTTCCTTTGCACACTTTTGCTGCAAGCGGAGAATCTTTACTTTTAGAATCTTTGTTGCGGCATGATGTTGATATTAATGTTATGGATAAGGTACATGAATACTAATTTATACACGGAAGATTATAATGTGTGGAATCCTCTATTTAAACTATTGTGTTTTGTTTTACTTTTTCAAGGATGGTTTGACCGCTCTTTACAAAGCGGTAATTGGAAGAAAGCATGCCATAACCAACTGTCTCTTGAGAAACTCGGCAAATCCGTTTGTGCAAGATAATGTGAGTGAAAAATTAATTGTGTGTTGTGCTGTCATCGTAGCATACGTAAACCTTTATCTGTTGATTTTCTTACTACGATTTATATTTCGTGCTCTTCCTGCCCTCACCGGGAATTCATCATTGTTATCATTACATCTTAGACGCTTATAGCATAGACTCTTGTCATAGAAGTGTTTATGCATAAGATTGTTTTAGAACAAAAGATAAAATAAAATCAAATTGTTGCATATAAGCTATAAGCTGTTTTCATAAGCTATCCTGGGAGCTTATGGAAATATGCTGAAAACAACTTATGGAGATGTTTATAAGCTGTTTCCATAAGCTCTTCTGAACAGTCTCATGAGTGTTTATGCTAATAGATAAGCTCTTCTGAACAACTTATGGAGATGTCAATCCAAACATGCCCTTAATCTATTAACATATAGTTATTATATCCTTAGTTACCTGTTGGTATCCTGATATTCTATGCATTTGCTTTGTTGTTTATGTGCTGGAAACAGGATGGGGCCACCTTGATGCACTATGCTGTACAAACAGCGTCTGTCCGAACAATTAAAGTACTCTTGTTGTACAATGTGGATATAAATCTTCAGGACAATGTATGATCAATTGTTCCGATAATTAGCTTGTCTACCTCTTACTTTTTTGTAGACCACTGTTTGAGAACAAAATTCATTTGCTCTGTCTTAGGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGAACTGACATAGTGAAGCTTCTGCTGATTAAAGGTTCTGATCAGAAATTAAAAAACAAGGTAATTGTCTATTGATTTCCTATATTAATCTATCAATGTAATAGAACCTTGTGTGTTAGATAATGTGGGTTGAATATAGATGCTTTTAACGGGTCATTTGGGTTTTTTGTGGGTTTGTGGTGTTCCGTATAATTGCGGCATCCCATTGTATTTTTTCCCTTTTTTATCCGCGAGTTTTTTGTGCTTCTTGCACTTACTCGACGAGAATAATATTAGCCTTTCAAAAAAAAAAAGGGTCATTGGTAAATATCAGCTGTCACTGCTATTCAGCTATGAAGCAACACAAACATTCATCATGACACTGGCACTTTGACATCGATAATAATTTATAAAATAGAAGCGGGCTGAATATAGGTGCTTTTAATGGGTCGTTGGTAAAATATCAGTTGTCACTGGTATTTACCTACGAAGCAACACAGGCATTCAACATTACACTGACACGCAGACATTGATAATTCTTTAGAAAATAGAAGTGGTTAAATGTAACCTCATGTGTTGGTGTTATGTTGGACATCAGACATGTATTCTTTAGAAAACAGGTATTTAGAAGATTTGTCTCTTCCTTAAGAACCAGTTAATGAAAGGCTAAGAAATTGAGATACTTACAAGAGATTCGCCCATTAACCAGGGAAGTCTTTCCTAAGTCATTAAAAACCTATCGGTTGTTGAAGAAAAACTTTCAACTGTTATTTAGGAATCATTAGACTTTGCCAAGCACTTGCTTCTTTAGCGAACTATTACATATCTAGTCCCATGCTTGGATAAAAAAAAAATTAATAGTTTCATTAAAATATTGATTTTTGATAGACCGTGACGCGTTGATTAGTCAATCTCAGTCCTCGCCTTGCAGGAGAAGTGATAAGGCTTTGATTGAATTTGTTTTGGAGCCGTGATTGATGAATATTTAGTTTTTTGTTTAACAGCTCTCTGAAGTCTAGAGTTTTGTGCAACTCGATGTCGAATTTTAATGTGCATATCATAATATTTTGTCTGTGGTTTATAAAATTAGAGAAACTCTTGAGCAATGATTGATTGTTCAAGATATGTTGTCTAGCAGTAAGCAGATTAATACTGGCCATTTCTTTTACAGTGATATTTGAATTCAATTTGTCTTTTGTTTGTCTCAGGATGGTTTAACTCCACTCGACCTTTGTCTTTACTCTGGTCAAAATATCAGAACATATGAGTTAATCAAGTTGTTGAAACAGCCTTATAGACGCTCCCGACAGACGGGGATAAGAAGAAAATAA

Protein sequence

>MS.gene64767.t1

MFNFSTLVHNPQPHTLFFSPFPSSSSTPRKFQSFQSLTNRNLHKILSSSHQHDNNYEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISKKKKKTVVKSENLVPDKWKEVQAEINITKKERRKIAQEIEFNSKVMKKKRGLIPLRDMDLNEYKAYKEAKLAQLKPLVLGKVFAEKEDDEEEEGGLSDERVVPRNPRWAVYGRGFEDVNEFLNSESYDSAAMKTGGRPRLFTREERDLLSKKKPDLSVATSDKWLPLHTFAASGESLLLESLLRHDVDINVMDKDGLTALYKAVIGRKHAITNCLLRNSANPFVQDNDGATLMHYAVQTASVRTIKVLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLIKGSDQKLKNKDGLTPLDLCLYSGQNIRTYELIKLLKQPYRRSRQTGIRRK