AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053928


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053928.t1 MTR_0194s0050 98.450 387 6 0 15 401 1 387 0.0 789
MS.gene053928.t1 MTR_3g099620 45.175 228 102 5 179 395 97 312 4.77e-54 182
MS.gene053928.t1 MTR_1g082480 47.368 209 99 4 191 395 129 330 1.63e-53 181
MS.gene053928.t1 MTR_8g066770 40.714 280 115 8 153 401 50 309 4.84e-52 176
MS.gene053928.t1 MTR_7g113830 45.133 226 109 6 180 401 98 312 1.26e-51 176
MS.gene053928.t1 MTR_8g024210 53.555 211 79 4 187 396 170 362 2.35e-51 176
MS.gene053928.t1 MTR_1g082480 48.663 187 86 3 191 374 129 308 2.73e-49 170
MS.gene053928.t1 MTR_3g090850 38.434 281 128 7 155 390 46 326 8.45e-49 168
MS.gene053928.t1 MTR_2g022280 45.408 196 97 2 198 393 1 186 1.13e-47 161
MS.gene053928.t1 MTR_1g028470 38.496 226 128 1 176 390 65 290 9.13e-47 162
MS.gene053928.t1 MTR_5g064950 43.981 216 112 6 179 391 79 288 1.54e-46 162
MS.gene053928.t1 MTR_5g064950 45.685 197 99 5 179 373 79 269 5.53e-44 155
MS.gene053928.t1 MTR_8g067280 27.511 229 135 9 173 397 439 640 3.11e-16 80.9
MS.gene053928.t1 MTR_5g030430 26.267 217 131 6 173 383 470 663 6.32e-14 73.9
MS.gene053928.t1 MTR_4g094762 25.500 200 132 4 200 397 293 477 5.67e-13 70.5
MS.gene053928.t1 MTR_3g498695 28.063 253 136 11 121 370 239 448 3.09e-12 68.6
MS.gene053928.t1 MTR_3g498695 28.063 253 136 11 121 370 239 448 3.21e-12 68.2
MS.gene053928.t1 MTR_1g072320 29.032 155 95 5 200 354 471 610 4.05e-12 68.2
MS.gene053928.t1 MTR_5g014560 23.762 202 130 5 189 389 121 299 7.09e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053928.t1 AT3G24140 59.901 404 103 12 45 401 11 402 4.85e-139 403
MS.gene053928.t1 AT3G24140 59.653 404 104 12 45 401 11 402 2.44e-138 401
MS.gene053928.t1 AT3G06120 43.564 202 101 3 198 395 1 193 6.22e-48 162
MS.gene053928.t1 AT1G72210 42.922 219 106 4 188 401 115 319 8.22e-48 166
MS.gene053928.t1 AT1G22490 43.662 213 106 4 188 399 105 304 1.23e-47 165
MS.gene053928.t1 AT1G22490 45.989 187 88 3 187 373 104 277 2.10e-44 157
MS.gene053928.t1 AT1G72210 43.684 190 89 3 188 373 115 290 3.88e-43 153
MS.gene053928.t1 AT2G46810 41.176 204 98 3 191 392 114 297 1.23e-40 146
MS.gene053928.t1 AT2G46810 42.157 204 96 4 191 392 174 357 7.82e-40 145
MS.gene053928.t1 AT2G46810 41.176 204 98 3 191 392 186 369 8.96e-40 145
MS.gene053928.t1 AT4G01460 38.863 211 118 3 188 397 105 305 1.31e-39 144
MS.gene053928.t1 AT4G01460 38.863 211 118 3 188 397 105 305 1.31e-39 144
MS.gene053928.t1 AT5G46690 42.601 223 112 4 188 395 78 299 4.92e-39 142
MS.gene053928.t1 AT2G46810 44.022 184 82 2 191 373 114 277 1.59e-38 141
MS.gene053928.t1 AT3G61950 40.580 207 100 4 188 392 117 302 7.31e-38 139
MS.gene053928.t1 AT3G61950 42.487 193 89 3 188 379 117 288 1.27e-37 138
MS.gene053928.t1 AT3G61950 39.614 207 102 4 188 392 168 353 2.86e-37 139
MS.gene053928.t1 AT3G61950 41.451 193 91 3 188 379 168 339 5.05e-37 138
MS.gene053928.t1 AT5G46690 44.000 200 97 3 188 373 78 276 8.78e-36 133
MS.gene053928.t1 AT5G65320 36.321 212 122 4 188 396 92 293 1.13e-30 119
MS.gene053928.t1 AT5G65320 38.624 189 101 3 188 373 92 268 2.64e-27 110
MS.gene053928.t1 AT5G53210 65.714 70 24 0 196 265 100 169 3.38e-25 105
MS.gene053928.t1 AT5G53210 50.000 74 37 0 303 376 274 347 3.75e-15 76.6
MS.gene053928.t1 AT5G53210 65.714 70 24 0 196 265 100 169 5.24e-25 105
MS.gene053928.t1 AT5G53210 46.591 88 47 0 303 390 274 361 2.42e-18 86.3
MS.gene053928.t1 AT4G17880 27.354 223 126 7 156 375 380 569 4.85e-15 77.4
MS.gene053928.t1 AT1G32640 25.714 245 128 7 140 374 405 605 8.00e-15 76.6
MS.gene053928.t1 AT4G37850 25.573 262 161 6 140 393 90 325 7.96e-13 69.3
MS.gene053928.t1 AT4G37850 25.573 262 161 6 140 393 90 325 7.96e-13 69.3
MS.gene053928.t1 AT3G61950 66.667 42 14 0 188 229 168 209 1.31e-12 67.0
MS.gene053928.t1 AT3G61950 66.667 42 14 0 188 229 168 209 1.31e-12 67.0
MS.gene053928.t1 AT5G46760 24.898 245 150 7 135 375 358 572 2.44e-12 68.9

Find 78 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGATTCTTCGCGGTTTA+AGG 0.118591 5.3:+42691259 None:intergenic
GTGATGCAGTTTGCAGATTT+TGG 0.187925 5.3:-42691293 MS.gene053928:CDS
GGTGATCAAGCTTCTATAAT+TGG 0.199677 5.3:-42690391 MS.gene053928:CDS
TCACTTGTCTTAACAGTTCT+TGG 0.201116 5.3:+42690993 None:intergenic
CACCACTCAACATCAAATTT+TGG 0.284583 5.3:+42691180 None:intergenic
CCTCCTGAAGTTTGTGTTTG+AGG 0.301078 5.3:+42691359 None:intergenic
TCGCGGTTTAAGGCTAATTT+AGG 0.318430 5.3:+42691269 None:intergenic
ACTAGCTTCATCTGGTCATT+TGG 0.371823 5.3:+42690211 None:intergenic
AAGCTAGTTGAGATGGAAAC+TGG 0.382861 5.3:-42690196 MS.gene053928:CDS
GTGATCAAGCTTCTATAATT+GGG 0.386419 5.3:-42690390 MS.gene053928:CDS
AACCAGGCATGAGGGATCTA+AGG 0.393915 5.3:+42690892 None:intergenic
TCTTTACTCATTCAATGTTA+AGG 0.395515 5.3:-42689984 MS.gene053928:intron
TATAGAATTTGTGAGGGAAT+TGG 0.396789 5.3:-42690362 MS.gene053928:CDS
GATGTAGAAGTGAAACTTCT+AGG 0.406812 5.3:-42690133 MS.gene053928:CDS
GCCTTAAACCGCGAAGAATC+AGG 0.418841 5.3:-42691260 MS.gene053928:CDS
CCATCTCAACTAGCTTCATC+TGG 0.419409 5.3:+42690203 None:intergenic
AAGCACAATCAAAACAAGTT+GGG 0.436877 5.3:-42690288 MS.gene053928:CDS
TGCAGAGAGTAAGTCATGTT+TGG 0.450615 5.3:-42690158 MS.gene053928:CDS
TATCGAGTTGGCGAAACATC+GGG 0.454521 5.3:-42691416 MS.gene053928:CDS
TCTATCTTATTGGTTAAGAC+AGG 0.457469 5.3:+42691206 None:intergenic
TTGAGTGGTGGTGATGGGTT+AGG 0.458608 5.3:-42691167 MS.gene053928:CDS
GTTCGTATTGTTGTTGCTGT+TGG 0.465123 5.3:+42691450 None:intergenic
ATCCTCTCAAGGAGAAGGCC+TGG 0.465771 5.3:-42690091 MS.gene053928:CDS
GTCCTTAGATCCCTCATGCC+TGG 0.466194 5.3:-42690894 MS.gene053928:CDS
GGAAACTTGAGAAAATAAAC+CGG 0.469347 5.3:+42691227 None:intergenic
CAAAAGAGAAGGAGACTACT+AGG 0.474641 5.3:-42690313 MS.gene053928:CDS
GAAGCACAATCAAAACAAGT+TGG 0.486078 5.3:-42690289 MS.gene053928:CDS
TTGATGTTGAGTGGTGGTGA+TGG 0.503048 5.3:-42691173 MS.gene053928:CDS
TGTGTTGAAGCTACAAGGTA+TGG 0.505565 5.3:+42691502 None:intergenic
TTCATCTGGTCATTTGGTAA+AGG 0.508125 5.3:+42690217 None:intergenic
CCAGATGAAGCTAGTTGAGA+TGG 0.511789 5.3:-42690203 MS.gene053928:CDS
GCCTGGTTCATACGTGCAAA+GGG 0.513019 5.3:-42690877 MS.gene053928:intron
TGGTCATTTGGTAAAGGAGA+TGG 0.513191 5.3:+42690223 None:intergenic
AAGAACTGTCTGTTCAATAG+TGG 0.519118 5.3:+42690003 None:intergenic
ATATCGAGTTGGCGAAACAT+CGG 0.525109 5.3:-42691417 MS.gene053928:CDS
TGATGTTGAGTGGTGGTGAT+GGG 0.525956 5.3:-42691172 MS.gene053928:CDS
TGCAAGAGAACAACAAGAAG+AGG 0.529798 5.3:-42691022 MS.gene053928:CDS
ATGGTCTTGATCAACTGTCC+AGG 0.530534 5.3:+42690073 None:intergenic
TGCCTGGTTCATACGTGCAA+AGG 0.533937 5.3:-42690878 MS.gene053928:CDS
AGCTAGTGATACAAGGTTCA+CGG 0.534009 5.3:-42689686 MS.gene053928:CDS
CTTCAATACCTGATTCTTCG+CGG 0.534087 5.3:+42691252 None:intergenic
CATATCTTCAAGAGCAGCAA+TGG 0.547350 5.3:+42690054 None:intergenic
GTCCAGGCCTTCTCCTTGAG+AGG 0.550662 5.3:+42690089 None:intergenic
ACCCTTTGCACGTATGAACC+AGG 0.550812 5.3:+42690876 None:intergenic
TCAAGTGTGTTGAAGCTACA+AGG 0.560312 5.3:+42691497 None:intergenic
TTAAAATCCTCTCAAGGAGA+AGG 0.575154 5.3:-42690096 MS.gene053928:CDS
GTCTAGAATCACAAAAGAGA+AGG 0.576264 5.3:-42690324 MS.gene053928:CDS
AGTTTCTGACGAGAACAACT+CGG 0.576812 5.3:-42691069 MS.gene053928:CDS
ATGCCTCAAACACAAACTTC+AGG 0.576898 5.3:-42691362 MS.gene053928:CDS
AGAATCAGGTATTGAAGACC+CGG 0.581186 5.3:-42691246 MS.gene053928:CDS
TGACTCACATAGCTGTTGAA+AGG 0.591781 5.3:-42690950 MS.gene053928:CDS
GTTGGTGATGATGATGATCA+AGG 0.593143 5.3:+42691468 None:intergenic
AGCACAATCAAAACAAGTTG+GGG 0.596948 5.3:-42690287 MS.gene053928:CDS
TGAAAACAACAACGGAATGG+TGG 0.599929 5.3:-42691393 MS.gene053928:CDS
TCCAGGTAGCTAGTGATACA+AGG 0.601551 5.3:-42689693 MS.gene053928:intron
GCACGTATGAACCAGGCATG+AGG 0.603673 5.3:+42690883 None:intergenic
CAATGATTAAAATCCTCTCA+AGG 0.606240 5.3:-42690102 MS.gene053928:CDS
ATCAAGCTTCTATAATTGGG+GGG 0.607172 5.3:-42690387 MS.gene053928:CDS
GAGGTTCAAATTAACAAGCG+TGG 0.607996 5.3:-42691132 MS.gene053928:CDS
CACGTATGAACCAGGCATGA+GGG 0.608646 5.3:+42690884 None:intergenic
GACCAAAATTTGATGTTGAG+TGG 0.615025 5.3:-42691182 MS.gene053928:CDS
TGATCAAGCTTCTATAATTG+GGG 0.615729 5.3:-42690389 MS.gene053928:CDS
TAGCTGTTGAAAGGAATCGA+AGG 0.623409 5.3:-42690941 MS.gene053928:CDS
GGGTGAAAACAACAACGGAA+TGG 0.626152 5.3:-42691396 MS.gene053928:CDS
AAAACTTAGTATCTGCTGAA+CGG 0.628856 5.3:+42689645 None:intergenic
GATCAAGCTTCTATAATTGG+GGG 0.640085 5.3:-42690388 MS.gene053928:CDS
TCAAGCTTCTATAATTGGGG+GGG 0.643949 5.3:-42690386 MS.gene053928:CDS
TAGTGGTGATGTTTGTGTGA+AGG 0.650341 5.3:+42690020 None:intergenic
TTGGTGATGATGATGATCAA+GGG 0.654699 5.3:+42691469 None:intergenic
GTGTTGAAGCTACAAGGTAT+GGG 0.656678 5.3:+42691503 None:intergenic
AAAATTTGAGCAGAACAACA+TGG 0.657106 5.3:+42691544 None:intergenic
GAAACTTGAGAAAATAAACC+GGG 0.657788 5.3:+42691228 None:intergenic
CAAAATTTGATGTTGAGTGG+TGG 0.660663 5.3:-42691179 MS.gene053928:CDS
CCTCAAACACAAACTTCAGG+AGG 0.664814 5.3:-42691359 MS.gene053928:CDS
GTTCAAATTAACAAGCGTGG+AGG 0.690801 5.3:-42691129 MS.gene053928:CDS
TTGAAGCTACAAGGTATGGG+TGG 0.705250 5.3:+42691506 None:intergenic
GGTTAGGAGAAAATGACGAG+AGG 0.716694 5.3:-42691151 MS.gene053928:CDS
ACATCGGGTGAAAACAACAA+CGG 0.729217 5.3:-42691401 MS.gene053928:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAACAATAATTTAAAACTT+TGG + chr5.3:42690611-42690630 None:intergenic 15.0%
!!! GTTTTTGATTTTACAATATA+GGG - chr5.3:42690751-42690770 MS.gene053928:intron 15.0%
!!! TGTTTTTGATTTTACAATAT+AGG - chr5.3:42690750-42690769 MS.gene053928:intron 15.0%
!! CAAACATAAACTAAAATTTG+AGG - chr5.3:42691397-42691416 MS.gene053928:CDS 20.0%
! ATTATCTCATAAGATGTGAA+TGG + chr5.3:42691274-42691293 None:intergenic 25.0%
! ATTGCACCAAAATTAAACAA+TGG - chr5.3:42690672-42690691 MS.gene053928:intron 25.0%
! GAAAAAATGTATGTTATAGC+TGG - chr5.3:42690335-42690354 MS.gene053928:CDS 25.0%
! TCTTTACTCATTCAATGTTA+AGG - chr5.3:42691179-42691198 MS.gene053928:CDS 25.0%
!!! ATTTTGGTCTTCTATCTTAT+TGG + chr5.3:42689970-42689989 None:intergenic 25.0%
!!! CTCTAACCATTGTTTAATTT+TGG + chr5.3:42690681-42690700 None:intergenic 25.0%
AAAACTTAGTATCTGCTGAA+CGG + chr5.3:42691521-42691540 None:intergenic 30.0%
AAGCACAATCAAAACAAGTT+GGG - chr5.3:42690875-42690894 MS.gene053928:intron 30.0%
ATGTTATAGCTGGTGAAATT+TGG - chr5.3:42690345-42690364 MS.gene053928:CDS 30.0%
CAATGATTAAAATCCTCTCA+AGG - chr5.3:42691061-42691080 MS.gene053928:CDS 30.0%
CTGATACCATGTTGTAATTT+GGG + chr5.3:42690414-42690433 None:intergenic 30.0%
GAAACTTGAGAAAATAAACC+GGG + chr5.3:42689938-42689957 None:intergenic 30.0%
GGAAACTTGAGAAAATAAAC+CGG + chr5.3:42689939-42689958 None:intergenic 30.0%
GTGATCAAGCTTCTATAATT+GGG - chr5.3:42690773-42690792 MS.gene053928:intron 30.0%
TATAGAATTTGTGAGGGAAT+TGG - chr5.3:42690801-42690820 MS.gene053928:intron 30.0%
TCTGATACCATGTTGTAATT+TGG + chr5.3:42690415-42690434 None:intergenic 30.0%
TGATACCATGTTGTAATTTG+GGG + chr5.3:42690413-42690432 None:intergenic 30.0%
TGATCAAGCTTCTATAATTG+GGG - chr5.3:42690774-42690793 MS.gene053928:intron 30.0%
TGTTATAGCTGGTGAAATTT+GGG - chr5.3:42690346-42690365 MS.gene053928:CDS 30.0%
! AACTGTGTCCATGATTTTTA+AGG + chr5.3:42690569-42690588 None:intergenic 30.0%
! CTCAAATTTTGAATCTTTGC+AGG - chr5.3:42689632-42689651 MS.gene053928:CDS 30.0%
! TCTATCTTATTGGTTAAGAC+AGG + chr5.3:42689960-42689979 None:intergenic 30.0%
!!! TAAGTTTTAGACTTAGTACG+TGG + chr5.3:42691370-42691389 None:intergenic 30.0%
AAAGGAGATGGAAAAAATGG+AGG + chr5.3:42690931-42690950 None:intergenic 35.0%
AAGAACTGTCTGTTCAATAG+TGG + chr5.3:42691163-42691182 None:intergenic 35.0%
AGCACAATCAAAACAAGTTG+GGG - chr5.3:42690876-42690895 MS.gene053928:intron 35.0%
ATCAAGCTTCTATAATTGGG+GGG - chr5.3:42690776-42690795 MS.gene053928:intron 35.0%
CAAAATTTGATGTTGAGTGG+TGG - chr5.3:42689984-42690003 MS.gene053928:intron 35.0%
GAAGCACAATCAAAACAAGT+TGG - chr5.3:42690874-42690893 MS.gene053928:intron 35.0%
GACCAAAATTTGATGTTGAG+TGG - chr5.3:42689981-42690000 MS.gene053928:intron 35.0%
GATCAAGCTTCTATAATTGG+GGG - chr5.3:42690775-42690794 MS.gene053928:intron 35.0%
GATGTAGAAGTGAAACTTCT+AGG - chr5.3:42691030-42691049 MS.gene053928:CDS 35.0%
GGTAAAGGAGATGGAAAAAA+TGG + chr5.3:42690934-42690953 None:intergenic 35.0%
GGTGATCAAGCTTCTATAAT+TGG - chr5.3:42690772-42690791 MS.gene053928:intron 35.0%
GTTATAGCTGGTGAAATTTG+GGG - chr5.3:42690347-42690366 MS.gene053928:CDS 35.0%
TCACTTGTCTTAACAGTTCT+TGG + chr5.3:42690173-42690192 None:intergenic 35.0%
TCCTGTCTCCTTAAAAATCA+TGG - chr5.3:42690558-42690577 MS.gene053928:intron 35.0%
TTAAAATCCTCTCAAGGAGA+AGG - chr5.3:42691067-42691086 MS.gene053928:CDS 35.0%
TTCATCTGGTCATTTGGTAA+AGG + chr5.3:42690949-42690968 None:intergenic 35.0%
! CAAACTTCAGGAGGATTTTA+TGG - chr5.3:42689813-42689832 MS.gene053928:intron 35.0%
! CACCACTCAACATCAAATTT+TGG + chr5.3:42689986-42690005 None:intergenic 35.0%
! GTCTAGAATCACAAAAGAGA+AGG - chr5.3:42690839-42690858 MS.gene053928:intron 35.0%
!! TCCATGATTTTTAAGGAGAC+AGG + chr5.3:42690562-42690581 None:intergenic 35.0%
!! TTGGTGATGATGATGATCAA+GGG + chr5.3:42689697-42689716 None:intergenic 35.0%
!!! CAGCTTTTGAAATATCGAGT+TGG - chr5.3:42689735-42689754 MS.gene053928:intron 35.0%
AAGCTAGTTGAGATGGAAAC+TGG - chr5.3:42690967-42690986 MS.gene053928:CDS 40.0%
ACATCGGGTGAAAACAACAA+CGG - chr5.3:42689762-42689781 MS.gene053928:intron 40.0%
AGCTAGTGATACAAGGTTCA+CGG - chr5.3:42691477-42691496 MS.gene053928:CDS 40.0%
AGTTTCTGACGAGAACAACT+CGG - chr5.3:42690094-42690113 MS.gene053928:CDS 40.0%
ATGCCTCAAACACAAACTTC+AGG - chr5.3:42689801-42689820 MS.gene053928:intron 40.0%
CAAAAGAGAAGGAGACTACT+AGG - chr5.3:42690850-42690869 MS.gene053928:intron 40.0%
CATATCTTCAAGAGCAGCAA+TGG + chr5.3:42691112-42691131 None:intergenic 40.0%
CTAACTCATCCTCACAAAAC+CGG - chr5.3:42690371-42690390 MS.gene053928:CDS 40.0%
CTTCAATACCTGATTCTTCG+CGG + chr5.3:42689914-42689933 None:intergenic 40.0%
GAGGTTCAAATTAACAAGCG+TGG - chr5.3:42690031-42690050 MS.gene053928:CDS 40.0%
GTATTGTTTGTGATGTGTCC+AGG - chr5.3:42691453-42691472 MS.gene053928:CDS 40.0%
GTGTTGAAGCTACAAGGTAT+GGG + chr5.3:42689663-42689682 None:intergenic 40.0%
GTTCAAATTAACAAGCGTGG+AGG - chr5.3:42690034-42690053 MS.gene053928:CDS 40.0%
TAGCTGTTGAAAGGAATCGA+AGG - chr5.3:42690222-42690241 MS.gene053928:CDS 40.0%
TCAAGCTTCTATAATTGGGG+GGG - chr5.3:42690777-42690796 MS.gene053928:intron 40.0%
TCAAGTGTGTTGAAGCTACA+AGG + chr5.3:42689669-42689688 None:intergenic 40.0%
TGAAAACAACAACGGAATGG+TGG - chr5.3:42689770-42689789 MS.gene053928:intron 40.0%
TGACTCACATAGCTGTTGAA+AGG - chr5.3:42690213-42690232 MS.gene053928:CDS 40.0%
TGCAAGAGAACAACAAGAAG+AGG - chr5.3:42690141-42690160 MS.gene053928:CDS 40.0%
TGCAGAGAGTAAGTCATGTT+TGG - chr5.3:42691005-42691024 MS.gene053928:CDS 40.0%
TGGTCATTTGGTAAAGGAGA+TGG + chr5.3:42690943-42690962 None:intergenic 40.0%
TGTGTTGAAGCTACAAGGTA+TGG + chr5.3:42689664-42689683 None:intergenic 40.0%
TTAGGCCCCAAATTACAACA+TGG - chr5.3:42690405-42690424 MS.gene053928:intron 40.0%
! AAACCGGCTTTGTATGAGTT+AGG - chr5.3:42690387-42690406 MS.gene053928:CDS 40.0%
! ACTAGCTTCATCTGGTCATT+TGG + chr5.3:42690955-42690974 None:intergenic 40.0%
! GTGATGCAGTTTGCAGATTT+TGG - chr5.3:42689870-42689889 MS.gene053928:intron 40.0%
! GTTCGTATTGTTGTTGCTGT+TGG + chr5.3:42689716-42689735 None:intergenic 40.0%
! TAGTGGTGATGTTTGTGTGA+AGG + chr5.3:42691146-42691165 None:intergenic 40.0%
! TCGCGGTTTAAGGCTAATTT+AGG + chr5.3:42689897-42689916 None:intergenic 40.0%
!! AGAATCAGGTATTGAAGACC+CGG - chr5.3:42689917-42689936 MS.gene053928:intron 40.0%
!! ATATCGAGTTGGCGAAACAT+CGG - chr5.3:42689746-42689765 MS.gene053928:intron 40.0%
!! GTTGGTGATGATGATGATCA+AGG + chr5.3:42689698-42689717 None:intergenic 40.0%
ACCTGATTCTTCGCGGTTTA+AGG + chr5.3:42689907-42689926 None:intergenic 45.0%
ACCTTGTATCACTAGCTACC+TGG + chr5.3:42691474-42691493 None:intergenic 45.0%
CCAGATGAAGCTAGTTGAGA+TGG - chr5.3:42690960-42690979 MS.gene053928:CDS 45.0%
CCTCAAACACAAACTTCAGG+AGG - chr5.3:42689804-42689823 MS.gene053928:intron 45.0%
CCTCCTGAAGTTTGTGTTTG+AGG + chr5.3:42689807-42689826 None:intergenic 45.0%
GGGGGCTATAGAATTTGTGA+GGG - chr5.3:42690795-42690814 MS.gene053928:intron 45.0%
GGGTGAAAACAACAACGGAA+TGG - chr5.3:42689767-42689786 MS.gene053928:intron 45.0%
GGTTAGGAGAAAATGACGAG+AGG - chr5.3:42690012-42690031 MS.gene053928:CDS 45.0%
TACAACATGGTATCAGAGCG+TGG - chr5.3:42690418-42690437 MS.gene053928:intron 45.0%
TCCAGGTAGCTAGTGATACA+AGG - chr5.3:42691470-42691489 MS.gene053928:CDS 45.0%
TGGTATCAGAGCGTGGTTAA+CGG - chr5.3:42690425-42690444 MS.gene053928:intron 45.0%
TTGAAGCTACAAGGTATGGG+TGG + chr5.3:42689660-42689679 None:intergenic 45.0%
! ATGGTCTTGATCAACTGTCC+AGG + chr5.3:42691093-42691112 None:intergenic 45.0%
! CCATCTCAACTAGCTTCATC+TGG + chr5.3:42690963-42690982 None:intergenic 45.0%
! TCCTCAGACACATGCTGTTT+GGG - chr5.3:42690496-42690515 MS.gene053928:intron 45.0%
! TGATGTTGAGTGGTGGTGAT+GGG - chr5.3:42689991-42690010 MS.gene053928:CDS 45.0%
! TTGATGTTGAGTGGTGGTGA+TGG - chr5.3:42689990-42690009 MS.gene053928:CDS 45.0%
!! CATACAAAGCCGGTTTTGTG+AGG + chr5.3:42690383-42690402 None:intergenic 45.0%
!! CGGTTTTGTGAGGATGAGTT+AGG + chr5.3:42690373-42690392 None:intergenic 45.0%
!! TATCGAGTTGGCGAAACATC+GGG - chr5.3:42689747-42689766 MS.gene053928:intron 45.0%
AACCAGGCATGAGGGATCTA+AGG + chr5.3:42690274-42690293 None:intergenic 50.0%
ACCCTTTGCACGTATGAACC+AGG + chr5.3:42690290-42690309 None:intergenic 50.0%
AGGAGACAGGAACATACGTC+TGG + chr5.3:42690549-42690568 None:intergenic 50.0%
CACGTATGAACCAGGCATGA+GGG + chr5.3:42690282-42690301 None:intergenic 50.0%
GCCTGGTTCATACGTGCAAA+GGG - chr5.3:42690286-42690305 MS.gene053928:CDS 50.0%
GCCTTAAACCGCGAAGAATC+AGG - chr5.3:42689903-42689922 MS.gene053928:intron 50.0%
GGGCCTAACTCATACAAAGC+CGG + chr5.3:42690393-42690412 None:intergenic 50.0%
GGGGGGCTATAGAATTTGTG+AGG - chr5.3:42690794-42690813 MS.gene053928:intron 50.0%
GTCCTCAGACACATGCTGTT+TGG - chr5.3:42690495-42690514 MS.gene053928:intron 50.0%
TGCCTGGTTCATACGTGCAA+AGG - chr5.3:42690285-42690304 MS.gene053928:CDS 50.0%
! CCTCAGACACATGCTGTTTG+GGG - chr5.3:42690497-42690516 MS.gene053928:intron 50.0%
! CTCAGACACATGCTGTTTGG+GGG - chr5.3:42690498-42690517 MS.gene053928:intron 50.0%
!! TTGAGTGGTGGTGATGGGTT+AGG - chr5.3:42689996-42690015 MS.gene053928:CDS 50.0%
ATCCTCTCAAGGAGAAGGCC+TGG - chr5.3:42691072-42691091 MS.gene053928:CDS 55.0%
CCCCAAACAGCATGTGTCTG+AGG + chr5.3:42690500-42690519 None:intergenic 55.0%
GCACGTATGAACCAGGCATG+AGG + chr5.3:42690283-42690302 None:intergenic 55.0%
GTCCTTAGATCCCTCATGCC+TGG - chr5.3:42690269-42690288 MS.gene053928:CDS 55.0%
! AGACACATGCTGTTTGGGGG+TGG - chr5.3:42690501-42690520 MS.gene053928:intron 55.0%
GTCCAGGCCTTCTCCTTGAG+AGG + chr5.3:42691077-42691096 None:intergenic 60.0%
GCTGTTTGGGGGTGGTCGCA+CGG - chr5.3:42690509-42690528 MS.gene053928:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 42689621 42691564 42689621 ID=MS.gene053928
chr5.3 mRNA 42689621 42691564 42689621 ID=MS.gene053928.t1;Parent=MS.gene053928
chr5.3 exon 42690878 42691564 42690878 ID=MS.gene053928.t1.exon1;Parent=MS.gene053928.t1
chr5.3 CDS 42690878 42691564 42690878 ID=cds.MS.gene053928.t1;Parent=MS.gene053928.t1
chr5.3 exon 42689985 42690413 42689985 ID=MS.gene053928.t1.exon2;Parent=MS.gene053928.t1
chr5.3 CDS 42689985 42690413 42689985 ID=cds.MS.gene053928.t1;Parent=MS.gene053928.t1
chr5.3 exon 42689621 42689710 42689621 ID=MS.gene053928.t1.exon3;Parent=MS.gene053928.t1
chr5.3 CDS 42689621 42689710 42689621 ID=cds.MS.gene053928.t1;Parent=MS.gene053928.t1
Gene Sequence

>MS.gene053928

ATGTTGTTCTGCTCAAATTTTGAATCTTTGCAGGCACCACCCATACCTTGTAGCTTCAACACACTTGACTACTCCCTTGATCATCATCATCACCAACAGCAACAACAATACGAACAGCTTTTGAAATATCGAGTTGGCGAAACATCGGGTGAAAACAACAACGGAATGGTGGATAATTACATGCCTCAAACACAAACTTCAGGAGGATTTTATGGTGCAAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAACCGCGAAGAATCAGGTATTGAAGACCCGGTTTATTTTCTCAAGTTTCCTGTCTTAACCAATAAGATAGAAGACCAAAATTTGATGTTGAGTGGTGGTGATGGGTTAGGAGAAAATGACGAGAGGTTCAAATTAACAAGCGTGGAGGATAAATCAAGAGATCAACAAGATCACGAAGAAGCTCGAGTTTCTGACGAGAACAACTCGGTGCAAGAGAAGAATTGTGCAGTAGTGCAAGAGAACAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAACGTATGACTCACATAGCTGTTGAAAGGAATCGAAGGAAACAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGTATTTTTATTTATTTATTTTCTTCAAGAAAAAATGTATGTTATAGCTGGTGAAATTTGGGGCCTAACTCATCCTCACAAAACCGGCTTTGTATGAGTTAGGCCCCAAATTACAACATGGTATCAGAGCGTGGTTAACGGATGAGATGATTCTCATGTTGAGACATCATCTTGTGTTGTAGATGATCGTCCTCAGACACATGCTGTTTGGGGGTGGTCGCACGGTCTTCGTTCATCATCCAGACGTATGTTCCTGTCTCCTTAAAAATCATGGACACAGTTGTACGACTATAATATTGCACCAAAGTTTTAAATTATTGTTACTGTAATTGTTCTCTAAAATTTAACTATGTAAATGTCTATAAATTGCACCAAAATTAAACAATGGTTAGAGTTAGACACAAACTTTAAACTTTTTTCTTGATTGATTTATTATATAAGTTTGTTTTTGATTTTACAATATAGGGTGATCAAGCTTCTATAATTGGGGGGGCTATAGAATTTGTGAGGGAATTGGAACAACTTCTTCAATGTCTAGAATCACAAAAGAGAAGGAGACTACTAGGAGAAGCACAATCAAAACAAGTTGGGGATTCATCTCTTGCATCAACACAACAACAGCCTCCATTTTTTCCATCTCCTTTACCAAATGACCAGATGAAGCTAGTTGAGATGGAAACTGGACTTCAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAACTTCTAGGATTTGATGCAATGATTAAAATCCTCTCAAGGAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCTCTTGAAGATATGCAGCTCATTATCCTTCACACAAACATCACCACTATTGAACAGACAGTTCTTTACTCATTCAATGTTAAGGTATATTCATTAAGTGATTGCTTAAATGTTATGCGTTCATATAATATTACTTTTTTATACATATATGTATCCATTCACATCTTATGAGATAATAAACTTGCATCACAATGTGATATACTTGATTTTATTAGATGCATGTTTAAAAACATAAATTAAATTACTTCAGCCACGTACTAAGTCTAAAACTTAAGCAAATCAAACATAAACTAAAATTTGAGGATATATATGCTTTATGATATTGTAATATATATTGTATTGTTTGTGATGTGTCCAGGTAGCTAGTGATACAAGGTTCACGGCTGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA

Protein sequence

>MS.gene053928.t1

MLFCSNFESLQAPPIPCSFNTLDYSLDHHHHQQQQQYEQLLKYRVGETSGENNNGMVDNYMPQTQTSGGFYGANSFDKMSFADVMQFADFGPKLALNREESGIEDPVYFLKFPVLTNKIEDQNLMLSGGDGLGENDERFKLTSVEDKSRDQQDHEEARVSDENNSVQEKNCAVVQENNKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQVGDSSLASTQQQPPFFPSPLPNDQMKLVEMETGLQEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM