Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65114.t1 | XP_003622943.1 | 93.8 | 194 | 12 | 0 | 1 | 194 | 1 | 194 | 2.40E-96 | 361.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65114.t1 | Q9ZTW3 | 72.2 | 194 | 54 | 0 | 1 | 194 | 1 | 194 | 1.8e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65114.t1 | G7L1A5 | 93.8 | 194 | 12 | 0 | 1 | 194 | 1 | 194 | 1.7e-96 | 361.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene65114 | 0.811146 | 8.10E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene65114 | 0.824019 | 1.01E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene65114 | 0.816671 | 4.90E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene65114 | 0.809366 | 1.96E-50 | -1.69E-46 |
| MS.gene055942 | MS.gene65114 | 0.81338 | 2.64E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene65114 | 0.826579 | 2.51E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene65114 | 0.819549 | 1.10E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene65114 | 0.810237 | 1.27E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene65114 | 0.820786 | 5.71E-53 | -1.69E-46 |
| MS.gene058494 | MS.gene65114 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene059690 | MS.gene65114 | 0.852345 | 4.91E-61 | -1.69E-46 |
| MS.gene059694 | MS.gene65114 | 0.833157 | 6.27E-56 | -1.69E-46 |
| MS.gene059697 | MS.gene65114 | 0.82157 | 3.76E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65114.t1 | MTR_7g058640 | 93.846 | 195 | 12 | 0 | 1 | 195 | 1 | 195 | 3.26e-138 | 385 |
| MS.gene65114.t1 | MTR_7g058640 | 95.930 | 172 | 7 | 0 | 1 | 172 | 1 | 172 | 1.19e-123 | 348 |
| MS.gene65114.t1 | MTR_4g022570 | 74.872 | 195 | 49 | 0 | 1 | 195 | 1 | 195 | 2.67e-111 | 318 |
| MS.gene65114.t1 | MTR_1g047720 | 66.197 | 213 | 72 | 0 | 1 | 213 | 1 | 213 | 4.68e-111 | 317 |
| MS.gene65114.t1 | MTR_7g058900 | 70.769 | 195 | 57 | 0 | 1 | 195 | 1 | 195 | 2.72e-104 | 300 |
| MS.gene65114.t1 | MTR_4g083490 | 67.358 | 193 | 63 | 0 | 3 | 195 | 5 | 197 | 5.98e-101 | 291 |
| MS.gene65114.t1 | MTR_2g436870 | 61.033 | 213 | 83 | 0 | 1 | 213 | 1 | 213 | 1.52e-100 | 290 |
| MS.gene65114.t1 | MTR_2g028790 | 65.803 | 193 | 66 | 0 | 3 | 195 | 7 | 199 | 2.25e-97 | 282 |
| MS.gene65114.t1 | MTR_1g111890 | 47.619 | 231 | 102 | 2 | 1 | 212 | 1 | 231 | 3.58e-80 | 239 |
| MS.gene65114.t1 | MTR_7g058640 | 94.017 | 117 | 7 | 0 | 79 | 195 | 1 | 117 | 6.84e-77 | 227 |
| MS.gene65114.t1 | MTR_1g047710 | 60.902 | 133 | 51 | 1 | 56 | 187 | 3 | 135 | 3.37e-57 | 177 |
| MS.gene65114.t1 | MTR_4g022470 | 71.028 | 107 | 31 | 0 | 64 | 170 | 10 | 116 | 1.50e-52 | 165 |
| MS.gene65114.t1 | MTR_5g089370 | 36.649 | 191 | 118 | 3 | 5 | 194 | 2 | 190 | 2.82e-38 | 132 |
| MS.gene65114.t1 | MTR_4g052550 | 32.461 | 191 | 126 | 3 | 5 | 194 | 2 | 190 | 1.45e-36 | 127 |
| MS.gene65114.t1 | MTR_4g115390 | 29.524 | 210 | 141 | 4 | 6 | 210 | 3 | 210 | 3.16e-29 | 108 |
| MS.gene65114.t1 | MTR_4g022550 | 71.053 | 38 | 11 | 0 | 158 | 195 | 10 | 47 | 1.82e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65114.t1 | AT2G33120 | 72.821 | 195 | 53 | 0 | 1 | 195 | 1 | 195 | 7.80e-108 | 309 |
| MS.gene65114.t1 | AT1G04760 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 9.28e-108 | 309 |
| MS.gene65114.t1 | AT1G04760 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 9.28e-108 | 309 |
| MS.gene65114.t1 | AT1G04750 | 72.308 | 195 | 54 | 0 | 1 | 195 | 1 | 195 | 2.18e-107 | 308 |
| MS.gene65114.t1 | AT2G33120 | 69.458 | 203 | 54 | 1 | 1 | 195 | 1 | 203 | 1.24e-104 | 301 |
| MS.gene65114.t1 | AT2G32670 | 69.744 | 195 | 59 | 0 | 1 | 195 | 66 | 260 | 2.28e-104 | 303 |
| MS.gene65114.t1 | AT4G15780 | 61.202 | 183 | 70 | 1 | 1 | 182 | 1 | 183 | 2.99e-83 | 245 |
| MS.gene65114.t1 | AT2G33110 | 60.513 | 195 | 73 | 1 | 1 | 195 | 1 | 191 | 5.21e-83 | 246 |
| MS.gene65114.t1 | AT3G54300 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 2.73e-79 | 237 |
| MS.gene65114.t1 | AT3G54300 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 2.73e-79 | 237 |
| MS.gene65114.t1 | AT3G54300 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 2.73e-79 | 237 |
| MS.gene65114.t1 | AT2G33110 | 63.095 | 168 | 62 | 0 | 1 | 168 | 1 | 168 | 2.28e-76 | 228 |
| MS.gene65114.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.39e-58 | 181 |
| MS.gene65114.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.39e-58 | 181 |
| MS.gene65114.t1 | AT1G04750 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.39e-58 | 181 |
| MS.gene65114.t1 | AT5G11150 | 33.649 | 211 | 133 | 4 | 5 | 213 | 2 | 207 | 3.66e-39 | 134 |
| MS.gene65114.t1 | AT5G22360 | 32.536 | 209 | 136 | 4 | 5 | 211 | 2 | 207 | 4.25e-39 | 134 |
| MS.gene65114.t1 | AT5G11150 | 33.649 | 211 | 133 | 4 | 5 | 213 | 2 | 207 | 6.16e-39 | 134 |
| MS.gene65114.t1 | AT4G32150 | 34.211 | 190 | 122 | 3 | 5 | 193 | 2 | 189 | 8.70e-35 | 123 |
| MS.gene65114.t1 | AT2G25340 | 32.105 | 190 | 126 | 3 | 5 | 193 | 2 | 189 | 3.52e-32 | 116 |
| MS.gene65114.t1 | AT2G33120 | 67.742 | 62 | 20 | 0 | 134 | 195 | 52 | 113 | 4.65e-22 | 88.2 |
| MS.gene65114.t1 | AT3G24890 | 45.745 | 94 | 45 | 2 | 113 | 200 | 14 | 107 | 2.77e-18 | 77.8 |
Find 41 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAATAAAGAATT+TGG | 0.138378 | 7.1:-42775882 | MS.gene65114:CDS |
| CTTTGCAGGCACAAGATTTA+AGG | 0.164312 | 7.1:-42775188 | MS.gene65114:intron |
| GCAAGTTTGCTAACCTCTTC+TGG | 0.229459 | 7.1:+42775715 | None:intergenic |
| CAATCTTCACTTGACGATTA+AGG | 0.242055 | 7.1:+42775540 | None:intergenic |
| AGCTATTTCAGCAAAGTTTC+CGG | 0.255031 | 7.1:+42776387 | None:intergenic |
| TGCATATGCTCCTTCAATTT+CGG | 0.281591 | 7.1:+42775754 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7.1:-42776428 | MS.gene65114:CDS |
| TGGTTGCTGGGAGTCTTTGC+AGG | 0.323885 | 7.1:+42776356 | None:intergenic |
| AAAGCTTGAATAAAGAATTT+GGG | 0.394970 | 7.1:-42775881 | MS.gene65114:intron |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7.1:+42776405 | None:intergenic |
| AACTGTCAACCTTCGTGATC+AGG | 0.421098 | 7.1:-42775501 | MS.gene65114:intron |
| TTTGCAGGCACAAGATTTAA+GGG | 0.423640 | 7.1:-42775187 | MS.gene65114:intron |
| CAAGAAAGGCCATAGCAATA+TGG | 0.430285 | 7.1:+42775967 | None:intergenic |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 7.1:-42776449 | MS.gene65114:CDS |
| TATGTTGGAAAATATTGATC+AGG | 0.458760 | 7.1:-42775656 | MS.gene65114:intron |
| CTCCTTGATGTGATCAAGAA+AGG | 0.487927 | 7.1:+42775953 | None:intergenic |
| AGCTTACTGCCTTGTTGCTG+TGG | 0.489435 | 7.1:-42776003 | MS.gene65114:CDS |
| TCAAGTTCAAGATGTTATGT+TGG | 0.490196 | 7.1:-42775671 | MS.gene65114:CDS |
| AGCAAAGTTTCCGGTGAAGT+TGG | 0.500993 | 7.1:+42776396 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7.1:-42776437 | MS.gene65114:CDS |
| GTAATTTAGACCGAAATTGA+AGG | 0.508592 | 7.1:-42775764 | MS.gene65114:intron |
| GGCAAGTACTGAATCCATCA+TGG | 0.518155 | 7.1:+42776284 | None:intergenic |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7.1:-42776406 | MS.gene65114:CDS |
| GGCCTTTCTTGATCACATCA+AGG | 0.528346 | 7.1:-42775955 | MS.gene65114:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7.1:-42776298 | MS.gene65114:CDS |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7.1:+42776300 | None:intergenic |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.550493 | 7.1:-42775698 | MS.gene65114:CDS |
| TACTGAATCCATCATGGGCG+AGG | 0.571090 | 7.1:+42776290 | None:intergenic |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 7.1:-42776442 | MS.gene65114:CDS |
| TTTACCAAAAGATATGGTGG+AGG | 0.594903 | 7.1:-42775927 | MS.gene65114:CDS |
| TGCAGGCACAAGATTTAAGG+GGG | 0.606935 | 7.1:-42775185 | MS.gene65114:intron |
| TTGCAGGCACAAGATTTAAG+GGG | 0.610788 | 7.1:-42775186 | MS.gene65114:intron |
| GGCAATTAAGGAGAAAGATG+TGG | 0.621585 | 7.1:-42775155 | MS.gene65114:CDS |
| CAAAAGACTCCACAGCAACA+AGG | 0.623781 | 7.1:+42775994 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7.1:+42776312 | None:intergenic |
| GCAAGTACTGAATCCATCAT+GGG | 0.632742 | 7.1:+42776285 | None:intergenic |
| TTGTGTGGAACATCCAGAAG+AGG | 0.637264 | 7.1:-42775728 | MS.gene65114:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7.1:-42776328 | MS.gene65114:CDS |
| CTTTCTTGATCACATCAAGG+AGG | 0.668827 | 7.1:-42775952 | MS.gene65114:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7.1:-42775743 | MS.gene65114:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7.1:+42775492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGTAATTTAGTTATTTA+TGG | + | chr7.1:42776242-42776261 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTGTATATGCA+TGG | - | chr7.1:42775748-42775767 | MS.gene65114:CDS | 15.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | - | chr7.1:42775652-42775671 | MS.gene65114:intron | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | - | chr7.1:42775653-42775672 | MS.gene65114:intron | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | - | chr7.1:42775898-42775917 | MS.gene65114:CDS | 20.0% |
| !! | TAAAAGAAAAAGATAAAACG+AGG | + | chr7.1:42775274-42775293 | None:intergenic | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr7.1:42776312-42776331 | MS.gene65114:CDS | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | + | chr7.1:42776060-42776079 | None:intergenic | 20.0% |
| !!! | TCTTTTACATAATCTAATTG+TGG | - | chr7.1:42775287-42775306 | MS.gene65114:intron | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr7.1:42775440-42775459 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | - | chr7.1:42775878-42775897 | MS.gene65114:intron | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | - | chr7.1:42776196-42776215 | MS.gene65114:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | - | chr7.1:42776197-42776216 | MS.gene65114:intron | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | - | chr7.1:42775970-42775989 | MS.gene65114:CDS | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr7.1:42775085-42775104 | MS.gene65114:CDS | 30.0% | |
| GTAATTTAGACCGAAATTGA+AGG | - | chr7.1:42775770-42775789 | MS.gene65114:intron | 30.0% | |
| TAACTGATATGGTTTGAATG+TGG | - | chr7.1:42776323-42776342 | MS.gene65114:CDS | 30.0% | |
| TCAAATGCATTTACATGTAC+TGG | - | chr7.1:42775393-42775412 | MS.gene65114:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | - | chr7.1:42775863-42775882 | MS.gene65114:intron | 30.0% | |
| ! | GAGGATTTTACCAAAAGATA+TGG | - | chr7.1:42775601-42775620 | MS.gene65114:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGG+TGG | - | chr7.1:42775604-42775623 | MS.gene65114:intron | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr7.1:42775201-42775220 | None:intergenic | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | - | chr7.1:42776198-42776217 | MS.gene65114:intron | 30.0% |
| !! | AGTGAAGATTGATGTTTTGA+TGG | - | chr7.1:42776006-42776025 | MS.gene65114:intron | 30.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr7.1:42775206-42775225 | MS.gene65114:intron | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | + | chr7.1:42775997-42776016 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | + | chr7.1:42776076-42776095 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | - | chr7.1:42775907-42775926 | MS.gene65114:CDS | 35.0% | |
| TGCATATGCTCCTTCAATTT+CGG | + | chr7.1:42775783-42775802 | None:intergenic | 35.0% | |
| TTTACCAAAAGATATGGTGG+AGG | - | chr7.1:42775607-42775626 | MS.gene65114:intron | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | - | chr7.1:42776347-42776366 | MS.gene65114:CDS | 35.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+CGG | + | chr7.1:42775150-42775169 | None:intergenic | 35.0% |
| ! | TTTTCCTCCACCATATCTTT+TGG | + | chr7.1:42775614-42775633 | None:intergenic | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | - | chr7.1:42775558-42775577 | MS.gene65114:intron | 35.0% |
| !! | TACATGTACTGGTTTCATGT+CGG | - | chr7.1:42775404-42775423 | MS.gene65114:intron | 35.0% |
| !!! | TGAATTTTGTGTTGGTTGCT+GGG | + | chr7.1:42775193-42775212 | None:intergenic | 35.0% |
| AACGATCTGTGCTTCAAAGT+CGG | + | chr7.1:42775935-42775954 | None:intergenic | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | - | chr7.1:42776358-42776377 | MS.gene65114:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr7.1:42775836-42775855 | MS.gene65114:intron | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | + | chr7.1:42776045-42776064 | None:intergenic | 40.0% | |
| CAAGAAAGGCCATAGCAATA+TGG | + | chr7.1:42775570-42775589 | None:intergenic | 40.0% | |
| CTCCTTGATGTGATCAAGAA+AGG | + | chr7.1:42775584-42775603 | None:intergenic | 40.0% | |
| CTTTCTTGATCACATCAAGG+AGG | - | chr7.1:42775582-42775601 | MS.gene65114:intron | 40.0% | |
| CTTTGCAGGCACAAGATTTA+AGG | - | chr7.1:42776346-42776365 | MS.gene65114:CDS | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | - | chr7.1:42775791-42775810 | MS.gene65114:intron | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | - | chr7.1:42776379-42776398 | MS.gene65114:CDS | 40.0% | |
| TCATCACTAGCTATGACACA+TGG | + | chr7.1:42776083-42776102 | None:intergenic | 40.0% | |
| TCGCAGAAAACATAGTACTG+TGG | - | chr7.1:42776127-42776146 | MS.gene65114:intron | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | - | chr7.1:42776348-42776367 | MS.gene65114:CDS | 40.0% | |
| ! | CAGTACTATGTTTTCTGCGA+TGG | + | chr7.1:42776127-42776146 | None:intergenic | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr7.1:42775225-42775244 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | + | chr7.1:42775252-42775271 | None:intergenic | 40.0% |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | + | chr7.1:42775194-42775213 | None:intergenic | 40.0% |
| AACTGTCAACCTTCGTGATC+AGG | - | chr7.1:42776033-42776052 | MS.gene65114:intron | 45.0% | |
| AGCAAAGTTTCCGGTGAAGT+TGG | + | chr7.1:42775141-42775160 | None:intergenic | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | + | chr7.1:42775543-42775562 | None:intergenic | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | - | chr7.1:42776357-42776376 | MS.gene65114:CDS | 45.0% | |
| GGCCTTTCTTGATCACATCA+AGG | - | chr7.1:42775579-42775598 | MS.gene65114:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr7.1:42775423-42775442 | MS.gene65114:intron | 45.0% | |
| TGCAGGCACAAGATTTAAGG+GGG | - | chr7.1:42776349-42776368 | MS.gene65114:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr7.1:42775806-42775825 | MS.gene65114:intron | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | - | chr7.1:42776332-42776351 | MS.gene65114:CDS | 45.0% |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr7.1:42775822-42775841 | None:intergenic | 45.0% |
| !! | GGCAAGTACTGAATCCATCA+TGG | + | chr7.1:42775253-42775272 | None:intergenic | 45.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr7.1:42775237-42775256 | None:intergenic | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr7.1:42775247-42775266 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr7.1:42775236-42775255 | MS.gene65114:intron | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | - | chr7.1:42775531-42775550 | MS.gene65114:CDS | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr7.1:42775092-42775111 | MS.gene65114:CDS | 50.0% |
| GGGGGAATGCAGGGCAATTA+AGG | - | chr7.1:42776367-42776386 | MS.gene65114:CDS | 55.0% | |
| TGGTTGCTGGGAGTCTTTGC+AGG | + | chr7.1:42775181-42775200 | None:intergenic | 55.0% | |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | + | chr7.1:42775926-42775945 | None:intergenic | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr7.1:42775132-42775151 | None:intergenic | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr7.1:42775128-42775147 | MS.gene65114:CDS | 60.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr7.1:42775097-42775116 | MS.gene65114:CDS | 65.0% |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr7.1:42775106-42775125 | MS.gene65114:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 42775074 | 42776482 | 42775074 | ID=MS.gene65114 |
| chr7.1 | mRNA | 42775074 | 42776482 | 42775074 | ID=MS.gene65114.t1;Parent=MS.gene65114 |
| chr7.1 | exon | 42776293 | 42776482 | 42776293 | ID=MS.gene65114.t1.exon1;Parent=MS.gene65114.t1 |
| chr7.1 | CDS | 42776293 | 42776482 | 42776293 | ID=cds.MS.gene65114.t1;Parent=MS.gene65114.t1 |
| chr7.1 | exon | 42775882 | 42776023 | 42775882 | ID=MS.gene65114.t1.exon2;Parent=MS.gene65114.t1 |
| chr7.1 | CDS | 42775882 | 42776023 | 42775882 | ID=cds.MS.gene65114.t1;Parent=MS.gene65114.t1 |
| chr7.1 | exon | 42775657 | 42775777 | 42775657 | ID=MS.gene65114.t1.exon3;Parent=MS.gene65114.t1 |
| chr7.1 | CDS | 42775657 | 42775777 | 42775657 | ID=cds.MS.gene65114.t1;Parent=MS.gene65114.t1 |
| chr7.1 | exon | 42775502 | 42775564 | 42775502 | ID=MS.gene65114.t1.exon4;Parent=MS.gene65114.t1 |
| chr7.1 | CDS | 42775502 | 42775564 | 42775502 | ID=cds.MS.gene65114.t1;Parent=MS.gene65114.t1 |
| chr7.1 | exon | 42775074 | 42775202 | 42775074 | ID=MS.gene65114.t1.exon5;Parent=MS.gene65114.t1 |
| chr7.1 | CDS | 42775074 | 42775202 | 42775074 | ID=cds.MS.gene65114.t1;Parent=MS.gene65114.t1 |
| Gene Sequence |
| Protein sequence |
