Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65444.t1 | XP_024641268.1 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 3.70E-147 | 530.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65444.t1 | Q9LW60 | 43.5 | 278 | 129 | 7 | 1 | 269 | 1 | 259 | 3.9e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65444.t1 | A0A072VHH4 | 95.3 | 274 | 9 | 1 | 1 | 270 | 1 | 274 | 1.5e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene65444 | -0.816443 | 5.52E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene65444 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene053094 | MS.gene65444 | 0.828238 | 1.00E-54 | -1.69E-46 |
| MS.gene053298 | MS.gene65444 | 0.823846 | 1.11E-53 | -1.69E-46 |
| MS.gene053340 | MS.gene65444 | 0.885633 | 6.87E-72 | -1.69E-46 |
| MS.gene053963 | MS.gene65444 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene65444 | 0.819508 | 1.12E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene65444 | 0.831581 | 1.54E-55 | -1.69E-46 |
| MS.gene055147 | MS.gene65444 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene65444 | 0.805702 | 1.18E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene65444 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene65444 | 0.830678 | 2.57E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65444.t1 | MTR_1g041475 | 95.255 | 274 | 9 | 1 | 1 | 270 | 1 | 274 | 0.0 | 536 |
| MS.gene65444.t1 | MTR_1g075730 | 60.219 | 274 | 105 | 1 | 1 | 270 | 1 | 274 | 2.11e-117 | 337 |
| MS.gene65444.t1 | MTR_1g075730 | 58.993 | 278 | 106 | 1 | 1 | 270 | 1 | 278 | 7.02e-116 | 334 |
| MS.gene65444.t1 | MTR_8g463130 | 35.938 | 256 | 130 | 5 | 41 | 269 | 5 | 253 | 8.67e-38 | 134 |
| MS.gene65444.t1 | MTR_8g463130 | 36.719 | 256 | 128 | 5 | 41 | 269 | 33 | 281 | 1.28e-37 | 134 |
| MS.gene65444.t1 | MTR_2g008850 | 34.082 | 267 | 142 | 5 | 30 | 269 | 21 | 280 | 4.51e-33 | 122 |
| MS.gene65444.t1 | MTR_4g094208 | 31.429 | 280 | 158 | 5 | 17 | 269 | 4 | 276 | 3.18e-32 | 120 |
| MS.gene65444.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 5 | 253 | 6.77e-32 | 118 |
| MS.gene65444.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 11 | 234 | 1.10e-31 | 117 |
| MS.gene65444.t1 | MTR_2g008850 | 35.398 | 226 | 117 | 4 | 71 | 269 | 11 | 234 | 1.47e-31 | 117 |
| MS.gene65444.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 84 | 332 | 2.28e-31 | 119 |
| MS.gene65444.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 58 | 281 | 6.24e-31 | 116 |
| MS.gene65444.t1 | MTR_7g083300 | 71.084 | 83 | 18 | 3 | 79 | 159 | 14 | 92 | 1.06e-29 | 108 |
| MS.gene65444.t1 | MTR_3g074610 | 32.599 | 227 | 122 | 5 | 71 | 269 | 58 | 281 | 7.43e-27 | 105 |
| MS.gene65444.t1 | MTR_4g094542 | 31.641 | 256 | 140 | 5 | 41 | 269 | 117 | 364 | 3.04e-25 | 103 |
| MS.gene65444.t1 | MTR_1g014640 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 4.36e-24 | 99.4 |
| MS.gene65444.t1 | MTR_1g013400 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 4.36e-24 | 99.4 |
| MS.gene65444.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 66 | 280 | 5.06e-23 | 95.9 |
| MS.gene65444.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 44 | 258 | 5.93e-23 | 95.5 |
| MS.gene65444.t1 | MTR_2g078760 | 34.272 | 213 | 106 | 5 | 41 | 226 | 84 | 289 | 1.66e-19 | 86.3 |
| MS.gene65444.t1 | MTR_1g115570 | 28.111 | 217 | 127 | 8 | 79 | 270 | 126 | 338 | 1.12e-16 | 79.0 |
| MS.gene65444.t1 | MTR_2g078760 | 38.621 | 145 | 80 | 3 | 41 | 183 | 84 | 221 | 1.28e-16 | 77.8 |
| MS.gene65444.t1 | MTR_3g091060 | 26.407 | 231 | 141 | 5 | 67 | 270 | 113 | 341 | 6.74e-14 | 71.2 |
| MS.gene65444.t1 | MTR_5g024340 | 24.498 | 249 | 148 | 7 | 59 | 269 | 99 | 345 | 2.61e-13 | 69.3 |
| MS.gene65444.t1 | MTR_5g071550 | 27.155 | 232 | 129 | 9 | 73 | 269 | 148 | 374 | 2.88e-12 | 66.2 |
| MS.gene65444.t1 | MTR_4g094208 | 29.412 | 170 | 111 | 3 | 17 | 184 | 4 | 166 | 1.10e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65444.t1 | AT3G23360 | 43.011 | 279 | 129 | 7 | 1 | 269 | 1 | 259 | 1.82e-69 | 215 |
| MS.gene65444.t1 | AT4G28400 | 35.448 | 268 | 136 | 7 | 30 | 269 | 2 | 260 | 8.99e-37 | 131 |
| MS.gene65444.t1 | AT4G28400 | 35.798 | 257 | 129 | 6 | 41 | 269 | 34 | 282 | 1.51e-36 | 131 |
| MS.gene65444.t1 | AT2G20630 | 34.630 | 257 | 132 | 6 | 41 | 269 | 30 | 278 | 2.65e-36 | 130 |
| MS.gene65444.t1 | AT2G20630 | 34.241 | 257 | 133 | 6 | 41 | 269 | 30 | 278 | 7.45e-34 | 124 |
| MS.gene65444.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 2.14e-33 | 123 |
| MS.gene65444.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 2.14e-33 | 123 |
| MS.gene65444.t1 | AT1G22280 | 33.778 | 225 | 120 | 4 | 72 | 269 | 58 | 280 | 7.36e-30 | 114 |
| MS.gene65444.t1 | AT1G22280 | 33.333 | 231 | 119 | 5 | 72 | 269 | 58 | 286 | 4.34e-29 | 112 |
| MS.gene65444.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 4.48e-29 | 110 |
| MS.gene65444.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 4.48e-29 | 110 |
| MS.gene65444.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene65444.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene65444.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene65444.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene65444.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene65444.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene65444.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 7.27e-25 | 101 |
| MS.gene65444.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 7.27e-25 | 101 |
| MS.gene65444.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 8.70e-25 | 100 |
| MS.gene65444.t1 | AT5G24940 | 29.224 | 219 | 128 | 6 | 77 | 269 | 62 | 279 | 2.54e-23 | 98.6 |
| MS.gene65444.t1 | AT2G34740 | 29.020 | 255 | 145 | 5 | 43 | 269 | 88 | 334 | 8.22e-23 | 96.3 |
| MS.gene65444.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 7.79e-21 | 90.9 |
| MS.gene65444.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 7.79e-21 | 90.9 |
| MS.gene65444.t1 | AT4G28400 | 33.645 | 214 | 106 | 6 | 41 | 226 | 34 | 239 | 6.11e-20 | 86.7 |
| MS.gene65444.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 7.16e-17 | 80.1 |
| MS.gene65444.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 7.16e-17 | 80.1 |
| MS.gene65444.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 84 | 287 | 2.18e-12 | 66.2 |
| MS.gene65444.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 102 | 305 | 2.65e-12 | 66.2 |
| MS.gene65444.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 42 | 283 | 2.89e-11 | 63.2 |
| MS.gene65444.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 86 | 327 | 4.03e-11 | 63.2 |
Find 48 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTGGCTTGCAAATATT+TGG | 0.170520 | 1.1:+25597569 | None:intergenic |
| GAGATTCTTGTCAAAATAAT+TGG | 0.178491 | 1.1:+25597554 | None:intergenic |
| TGCTCTCTTGAGTGTTTCTT+TGG | 0.223443 | 1.1:+25596964 | None:intergenic |
| ACATCTGTGATGATAATAAA+TGG | 0.273873 | 1.1:-25596875 | MS.gene65444:CDS |
| TGATAAGATTCACTGCTTCT+TGG | 0.281632 | 1.1:+25595864 | None:intergenic |
| AACTTGTGGTTGGAAGTTAT+TGG | 0.296396 | 1.1:-25596125 | MS.gene65444:CDS |
| GTGGAGCATGATTGGATTAA+TGG | 0.328700 | 1.1:-25597702 | MS.gene65444:CDS |
| GAATGATTAAACATGAAATA+TGG | 0.342084 | 1.1:+25595771 | None:intergenic |
| TAGTACTGAATTTGTGATCT+TGG | 0.359368 | 1.1:-25596094 | MS.gene65444:CDS |
| CTTAGGAATCTTTGATACTT+TGG | 0.361268 | 1.1:-25597607 | MS.gene65444:CDS |
| TTGACTTGCACAGGCACTTC+GGG | 0.367269 | 1.1:-25597823 | MS.gene65444:intron |
| TCTGTGATACCAATGTTTCT+TGG | 0.370921 | 1.1:+25596757 | None:intergenic |
| ACATGATGACCATGTGATAT+TGG | 0.372321 | 1.1:+25597726 | None:intergenic |
| CGGGTGAAACTCTCATGTTT+AGG | 0.373283 | 1.1:-25597804 | MS.gene65444:CDS |
| AAGAAGCAGTGAATCTTATC+AGG | 0.393702 | 1.1:-25595862 | MS.gene65444:CDS |
| TCAGATGAAACATGCATCAT+AGG | 0.400144 | 1.1:-25596902 | MS.gene65444:CDS |
| GGAATCTTTGATACTTTGGT+TGG | 0.403046 | 1.1:-25597603 | MS.gene65444:CDS |
| ACAAGAAGCAGCAGAGTGTT+TGG | 0.405610 | 1.1:-25595825 | MS.gene65444:CDS |
| GGCGTAGCTTATCAGACAAT+TGG | 0.418185 | 1.1:-25596797 | MS.gene65444:CDS |
| GTGATACAAAGAGAGCAAAT+TGG | 0.443813 | 1.1:-25597648 | MS.gene65444:CDS |
| GTAAGAAGAAATCATGGAGT+TGG | 0.448595 | 1.1:-25597771 | MS.gene65444:CDS |
| ATCATGTGGTGGAGCATGAT+TGG | 0.450402 | 1.1:-25597710 | MS.gene65444:CDS |
| AATTATGTTAGTCTCATTTG+AGG | 0.462042 | 1.1:-25596994 | MS.gene65444:intron |
| AGAAAGGTAAGAAGAAATCA+TGG | 0.465978 | 1.1:-25597777 | MS.gene65444:CDS |
| TGGCTAAGGAAGCATTGGTT+AGG | 0.478204 | 1.1:-25595805 | MS.gene65444:CDS |
| TCTTGGCAAGCAATGGCATA+TGG | 0.488135 | 1.1:-25596077 | MS.gene65444:CDS |
| AGCAGCAGAGTGTTTGGCTA+AGG | 0.497684 | 1.1:-25595819 | MS.gene65444:CDS |
| GAGACAGAATTGTGGTACTT+AGG | 0.501693 | 1.1:-25597624 | MS.gene65444:CDS |
| TTCTAAAGCTTCAGAACTTG+TGG | 0.505454 | 1.1:-25596139 | MS.gene65444:CDS |
| AAAGCTTCAGAACTTGTGGT+TGG | 0.510242 | 1.1:-25596135 | MS.gene65444:CDS |
| ATTGACTTGCACAGGCACTT+CGG | 0.511916 | 1.1:-25597824 | MS.gene65444:intron |
| AAACACTCTGCTGCTTCTTG+TGG | 0.521856 | 1.1:+25595827 | None:intergenic |
| CTCATGTTTAGGAAATAGAA+AGG | 0.530586 | 1.1:-25597793 | MS.gene65444:CDS |
| GTGTTTGGCTAAGGAAGCAT+TGG | 0.535898 | 1.1:-25595810 | MS.gene65444:CDS |
| ATCAATCATCCAAGAAACAT+TGG | 0.538131 | 1.1:-25596766 | MS.gene65444:CDS |
| GAGTTGGAAGCAAGCCATCA+TGG | 0.546613 | 1.1:-25597755 | MS.gene65444:CDS |
| GGCAAGCAATGGCATATGGC+AGG | 0.549047 | 1.1:-25596073 | MS.gene65444:intron |
| GAATCTTATCAGGCACATAG+AGG | 0.593854 | 1.1:-25595852 | MS.gene65444:CDS |
| AGTTCTGTAATCTCCGATGT+TGG | 0.599281 | 1.1:+25596835 | None:intergenic |
| AGGTAATGCAACAGGTACAA+AGG | 0.604493 | 1.1:-25596163 | MS.gene65444:intron |
| TTTGTGATCTTGGCAAGCAA+TGG | 0.607158 | 1.1:-25596084 | MS.gene65444:CDS |
| ATCACATGGTCATCATGTGG+TGG | 0.639046 | 1.1:-25597721 | MS.gene65444:CDS |
| GATATTGGCATCATCCATGA+TGG | 0.650715 | 1.1:+25597741 | None:intergenic |
| AAACTCGTGCTAGCCAACAT+CGG | 0.656947 | 1.1:-25596848 | MS.gene65444:CDS |
| ACACTCAAGAGAGCATACCT+AGG | 0.689445 | 1.1:-25596956 | MS.gene65444:CDS |
| TGGATGATGCCAATATCACA+TGG | 0.692201 | 1.1:-25597735 | MS.gene65444:CDS |
| AAATTGGTGAGACAGAATTG+TGG | 0.696148 | 1.1:-25597632 | MS.gene65444:CDS |
| AATATCACATGGTCATCATG+TGG | 0.739236 | 1.1:-25597724 | MS.gene65444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAAAACAAATATTTAA+GGG | - | chr1.1:25595853-25595872 | MS.gene65444:CDS | 10.0% |
| !! | CATAAGAAAACAAATATTTA+AGG | - | chr1.1:25595852-25595871 | MS.gene65444:CDS | 15.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1.1:25595868-25595887 | MS.gene65444:CDS | 15.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1.1:25595901-25595920 | None:intergenic | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1.1:25598007-25598026 | None:intergenic | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1.1:25596718-25596737 | None:intergenic | 20.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1.1:25595900-25595919 | None:intergenic | 20.0% |
| !! | TAATATTGTTATATTGAGAG+AGG | + | chr1.1:25597478-25597497 | None:intergenic | 20.0% |
| !! | TACTTTAATGAAGAGTAAAA+GGG | - | chr1.1:25596653-25596672 | MS.gene65444:intron | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1.1:25596719-25596738 | None:intergenic | 20.0% |
| !!! | CTATAAATGAGTATATGTTT+TGG | - | chr1.1:25597528-25597547 | MS.gene65444:intron | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1.1:25597072-25597091 | MS.gene65444:intron | 20.0% |
| !!! | TTGTAATGGATAAATATCTT+GGG | + | chr1.1:25597733-25597752 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCT+TGG | + | chr1.1:25597734-25597753 | None:intergenic | 20.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1.1:25596900-25596919 | MS.gene65444:CDS | 25.0% |
| ! | GAAAGTTTATGGATATAAGA+TGG | - | chr1.1:25596488-25596507 | MS.gene65444:intron | 25.0% |
| ! | GAGATTCTTGTCAAAATAAT+TGG | + | chr1.1:25596224-25596243 | None:intergenic | 25.0% |
| ! | GTACTTTAATGAAGAGTAAA+AGG | - | chr1.1:25596652-25596671 | MS.gene65444:intron | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1.1:25597257-25597276 | MS.gene65444:intron | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1.1:25596781-25596800 | MS.gene65444:CDS | 25.0% |
| !! | TCTATTTTCATAAGCTATCT+TGG | - | chr1.1:25596466-25596485 | MS.gene65444:intron | 25.0% |
| !!! | ATAATTGGCTTGCAAATATT+TGG | + | chr1.1:25596209-25596228 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1.1:25597425-25597444 | MS.gene65444:intron | 25.0% |
| !!! | TGTAATGGATAAATATCTTG+GGG | + | chr1.1:25597732-25597751 | None:intergenic | 25.0% |
| !!! | TTACTCGGAATTTTTTGTAA+TGG | + | chr1.1:25597747-25597766 | None:intergenic | 25.0% |
| AAAGTAATAGCATGTGAATC+AGG | - | chr1.1:25597592-25597611 | MS.gene65444:CDS | 30.0% | |
| AAGCTATCTTGGAAAGTTTA+TGG | - | chr1.1:25596477-25596496 | MS.gene65444:intron | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1.1:25595998-25596017 | MS.gene65444:intron | 30.0% | |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1.1:25597009-25597028 | MS.gene65444:intron | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1.1:25595982-25596001 | MS.gene65444:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1.1:25596168-25596187 | MS.gene65444:intron | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1.1:25595817-25595836 | MS.gene65444:CDS | 30.0% | |
| CTTCATGTAACAATGGAATA+AGG | + | chr1.1:25595819-25595838 | None:intergenic | 30.0% | |
| CTTGTCATAAGCATTTAAGA+TGG | + | chr1.1:25597318-25597337 | None:intergenic | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1.1:25596680-25596699 | None:intergenic | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1.1:25596628-25596647 | MS.gene65444:intron | 30.0% | |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1.1:25597429-25597448 | None:intergenic | 30.0% | |
| TTCATCACCTACAAATACAT+AGG | + | chr1.1:25597888-25597907 | None:intergenic | 30.0% | |
| TTGGCAGTCACATTTAATAA+TGG | - | chr1.1:25597547-25597566 | MS.gene65444:intron | 30.0% | |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1.1:25595771-25595790 | MS.gene65444:CDS | 30.0% |
| ! | ATCCTCGAAAATGTTTTACT+CGG | + | chr1.1:25597762-25597781 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1.1:25596730-25596749 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1.1:25596727-25596746 | MS.gene65444:intron | 30.0% |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1.1:25597681-25597700 | MS.gene65444:CDS | 30.0% |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1.1:25596228-25596247 | MS.gene65444:intron | 30.0% |
| !! | AACTGATTTGTTTCCTACTT+AGG | + | chr1.1:25597375-25597394 | None:intergenic | 30.0% |
| !! | ACTGATTTGTTTCCTACTTA+GGG | + | chr1.1:25597374-25597393 | None:intergenic | 30.0% |
| !! | CTCCATCTTTTTCATTCAAT+TGG | - | chr1.1:25597424-25597443 | MS.gene65444:intron | 30.0% |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1.1:25595826-25595845 | None:intergenic | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1.1:25596143-25596162 | MS.gene65444:CDS | 35.0% | |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1.1:25597650-25597669 | MS.gene65444:CDS | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1.1:25597913-25597932 | MS.gene65444:intron | 35.0% | |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1.1:25597121-25597140 | MS.gene65444:intron | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1.1:25596051-25596070 | MS.gene65444:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1.1:25596052-25596071 | None:intergenic | 35.0% | |
| AGATGGTTTAGAAGAGCTTA+TGG | + | chr1.1:25597301-25597320 | None:intergenic | 35.0% | |
| AGTCTGACAAGTACTTATGT+CGG | - | chr1.1:25596558-25596577 | MS.gene65444:intron | 35.0% | |
| CTCGAATGGAAGAACAAAAT+AGG | - | chr1.1:25596339-25596358 | MS.gene65444:intron | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1.1:25596172-25596191 | MS.gene65444:intron | 35.0% | |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1.1:25596004-25596023 | MS.gene65444:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1.1:25596127-25596146 | MS.gene65444:CDS | 35.0% | |
| TCAGATGAAACATGCATCAT+AGG | - | chr1.1:25596873-25596892 | MS.gene65444:CDS | 35.0% | |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1.1:25597021-25597040 | None:intergenic | 35.0% | |
| TGAGTCTCCTATGTATTTGT+AGG | - | chr1.1:25597878-25597897 | MS.gene65444:intron | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1.1:25597914-25597933 | None:intergenic | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1.1:25596957-25596976 | MS.gene65444:CDS | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1.1:25596310-25596329 | MS.gene65444:intron | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1.1:25596311-25596330 | MS.gene65444:intron | 35.0% |
| ! | TTCCGAGTAAAACATTTTCG+AGG | - | chr1.1:25597757-25597776 | MS.gene65444:CDS | 35.0% |
| ! | TTTCCTACTTAGGGTTTGTT+TGG | + | chr1.1:25597365-25597384 | None:intergenic | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1.1:25597090-25597109 | MS.gene65444:intron | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1.1:25597091-25597110 | MS.gene65444:intron | 35.0% |
| !! | GAATTTCTATTGACTTGCAC+AGG | - | chr1.1:25595943-25595962 | MS.gene65444:intron | 35.0% |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1.1:25596309-25596328 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1.1:25597636-25597655 | MS.gene65444:CDS | 35.0% |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1.1:25596839-25596858 | None:intergenic | 35.0% |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1.1:25597029-25597048 | MS.gene65444:intron | 35.0% |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1.1:25597640-25597659 | MS.gene65444:CDS | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1.1:25597612-25597631 | MS.gene65444:CDS | 40.0% | |
| AGTCCAAACAAACCCTAAGT+AGG | - | chr1.1:25597359-25597378 | MS.gene65444:intron | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1.1:25596943-25596962 | None:intergenic | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1.1:25597923-25597942 | MS.gene65444:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1.1:25596151-25596170 | MS.gene65444:CDS | 40.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1.1:25596037-25596056 | None:intergenic | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1.1:25596073-25596092 | MS.gene65444:intron | 40.0% | |
| TGCTCTCTTGAGTGTTTCTT+TGG | + | chr1.1:25596814-25596833 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1.1:25596040-25596059 | MS.gene65444:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1.1:25597604-25597623 | MS.gene65444:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1.1:25597691-25597710 | MS.gene65444:CDS | 40.0% | |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1.1:25597097-25597116 | MS.gene65444:intron | 40.0% |
| AAACTCGTGCTAGCCAACAT+CGG | - | chr1.1:25596927-25596946 | MS.gene65444:CDS | 45.0% | |
| ATCACATGGTCATCATGTGG+TGG | - | chr1.1:25596054-25596073 | MS.gene65444:intron | 45.0% | |
| CGGGTGAAACTCTCATGTTT+AGG | - | chr1.1:25595971-25595990 | MS.gene65444:intron | 45.0% | |
| GCTAATTCAGTGCTGCATTC+TGG | + | chr1.1:25597405-25597424 | None:intergenic | 45.0% | |
| GGCGTAGCTTATCAGACAAT+TGG | - | chr1.1:25596978-25596997 | MS.gene65444:CDS | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1.1:25597111-25597130 | MS.gene65444:intron | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1.1:25597698-25597717 | MS.gene65444:CDS | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1.1:25597951-25597970 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1.1:25597950-25597969 | MS.gene65444:intron | 45.0% |
| ! | ACACTCAAGAGAGCATACCT+AGG | - | chr1.1:25596819-25596838 | MS.gene65444:CDS | 45.0% |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1.1:25596065-25596084 | MS.gene65444:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1.1:25597965-25597984 | MS.gene65444:intron | 45.0% |
| !! | ATTGACTTGCACAGGCACTT+CGG | - | chr1.1:25595951-25595970 | MS.gene65444:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1.1:25597970-25597989 | MS.gene65444:intron | 45.0% |
| !!! | GTTTTTTTTAAAAAATTAAT+AGG | - | chr1.1:25597834-25597853 | MS.gene65444:intron | 5.0% |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1.1:25596020-25596039 | MS.gene65444:intron | 50.0% | |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1.1:25597956-25597975 | MS.gene65444:intron | 50.0% |
| !! | TTGACTTGCACAGGCACTTC+GGG | - | chr1.1:25595952-25595971 | MS.gene65444:intron | 50.0% |
| GAGCTTGGGAGACTCTCGAA+TGG | - | chr1.1:25596325-25596344 | MS.gene65444:intron | 55.0% | |
| GGCAAGCAATGGCATATGGC+AGG | - | chr1.1:25597702-25597721 | MS.gene65444:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 25595760 | 25598037 | 25595760 | ID=MS.gene65444 |
| chr1.1 | mRNA | 25595760 | 25598037 | 25595760 | ID=MS.gene65444.t1;Parent=MS.gene65444 |
| chr1.1 | exon | 25598005 | 25598037 | 25598005 | ID=MS.gene65444.t1.exon1;Parent=MS.gene65444.t1 |
| chr1.1 | CDS | 25598005 | 25598037 | 25598005 | ID=cds.MS.gene65444.t1;Parent=MS.gene65444.t1 |
| chr1.1 | exon | 25597548 | 25597832 | 25597548 | ID=MS.gene65444.t1.exon2;Parent=MS.gene65444.t1 |
| chr1.1 | CDS | 25597548 | 25597832 | 25597548 | ID=cds.MS.gene65444.t1;Parent=MS.gene65444.t1 |
| chr1.1 | exon | 25596747 | 25597005 | 25596747 | ID=MS.gene65444.t1.exon3;Parent=MS.gene65444.t1 |
| chr1.1 | CDS | 25596747 | 25597005 | 25596747 | ID=cds.MS.gene65444.t1;Parent=MS.gene65444.t1 |
| chr1.1 | exon | 25596074 | 25596171 | 25596074 | ID=MS.gene65444.t1.exon4;Parent=MS.gene65444.t1 |
| chr1.1 | CDS | 25596074 | 25596171 | 25596074 | ID=cds.MS.gene65444.t1;Parent=MS.gene65444.t1 |
| chr1.1 | exon | 25595760 | 25595897 | 25595760 | ID=MS.gene65444.t1.exon5;Parent=MS.gene65444.t1 |
| chr1.1 | CDS | 25595760 | 25595897 | 25595760 | ID=cds.MS.gene65444.t1;Parent=MS.gene65444.t1 |
| Gene Sequence |
| Protein sequence |
